BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021054
(318 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q54RP0|AGTA_DICDI UDP-galactose:fucoside alpha-3-galactosyltransferase
OS=Dictyostelium discoideum GN=agtA PE=1 SV=1
Length = 648
Score = 52.4 bits (124), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 73/176 (41%), Gaps = 19/176 (10%)
Query: 77 WRDYTLSQAASF----VAKNGTIIVCAVSQPYLPFLNNWLISISRQKHQDQVLVIAEDYA 132
+RD TL+ F + K+ I+ C + Y F I R +D ++ +
Sbjct: 22 FRDMTLNLLKCFEKLSIDKSRYILYCMDDKAYQFFAEFKGIECQRFS-RDDIINSSTSST 80
Query: 133 TLYKVNGRWPGHAVLVPPAPDSQTAHKFGSQGFFNFTSRRPCHLLHILELGYNVMYNDVD 192
L+ N + S+ A +G GF + +P +L +L+ GYNV++ D D
Sbjct: 81 QLFHDNNTNDNKGIY------SENAESYGDIGFRAICNEKPLVVLDVLKKGYNVLWTDTD 134
Query: 193 MVWLKDPFPYLQGDHDVYFTDDMAAVKPLDHSHDLPPPGKKGRTYICSCMIYLRPT 248
+VW +DPF ++F D+ + D+ ++ IC+ ++R
Sbjct: 135 IVWKRDPF--------IHFYQDINQENQFTNDDDIDLYVQQDDDDICAGFYFIRSN 182
>sp|Q3E6Y3|Y1869_ARATH Uncharacterized protein At1g28695 OS=Arabidopsis thaliana
GN=At1g28695 PE=2 SV=1
Length = 329
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 62/150 (41%), Gaps = 15/150 (10%)
Query: 84 QAASFVA---KNGTIIVCAVSQPYLP-----------FLNNWLISISRQKHQDQVLVIAE 129
+AA + A N T+I+ V++ Y+ FL ++ D ++V+A
Sbjct: 46 EAALYTAAAGNNKTVIITMVNKAYVKEVGRGSTMLDLFLESFWEGEGTLPLLDHLMVVAV 105
Query: 130 DYATLYKVN-GRWPGHAVLVPPAPDSQTAHKFGSQGFFNFTSRRPCHLLHILELGYNVMY 188
D + R + + D + F S+ F RR +L +L GYNV++
Sbjct: 106 DQTAYDRCRFKRLHCYKMETEDGVDLEGEKVFMSKDFIEMMWRRTRLILDVLRRGYNVIF 165
Query: 189 NDVDMVWLKDPFPYLQGDHDVYFTDDMAAV 218
D D++WL+ P L D+ + D V
Sbjct: 166 TDTDVMWLRSPLSRLNMSLDMQISVDRINV 195
>sp|Q8R6G8|TRMB_FUSNN Bifunctional glycosyltransferase/methyltransferase OS=Fusobacterium
nucleatum subsp. nucleatum (strain ATCC 25586 / CIP
101130 / JCM 8532 / LMG 13131) GN=trmB PE=3 SV=1
Length = 640
Score = 36.6 bits (83), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
Query: 187 MYNDVDMVWLKDPFPYLQGDHDVYFTDDMAAVKPLD------HSHDLPPPGK 232
++ +D + KD Y + DHDVY+ D + VK LD H+ DL K
Sbjct: 559 LFKTLDKIMKKDGMLYFKTDHDVYYNDVLELVKTLDNYEVIYHTSDLHNSEK 610
>sp|P79777|BRAC_CHICK Brachyury protein OS=Gallus gallus GN=T PE=2 SV=1
Length = 433
Score = 36.2 bits (82), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 54/134 (40%), Gaps = 20/134 (14%)
Query: 97 VCAVSQPYLPFLNNWLISISRQKHQDQVLVIAEDYATLYKVNGRW--PGHAVLVPPA-PD 153
+ A+ Y PF +L + R H+D + ++ + Y G W PG L PPA P
Sbjct: 201 ITALKIKYNPFAKAFLDAKERNDHKDMMEEAGDNQQSGYSQLGSWLIPGAGALCPPANPH 260
Query: 154 SQTAHKFGSQGFFNFTSRRPCHLLHILELGYNVMYNDVDMVWLKDPFPYLQGDHD-VYFT 212
SQ FG+ + + C L + Y P PY ++ +T
Sbjct: 261 SQ----FGAP--LSLSPAHSCERYSPLRNHRSAPY----------PNPYTHRNNSPTAYT 304
Query: 213 DDMAAVKPLDHSHD 226
D+ +A P+ SHD
Sbjct: 305 DNSSACLPMLQSHD 318
>sp|P71379|Y1343_HAEIN Putative csd-like protein HI_1343 OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=HI_1343 PE=5 SV=1
Length = 238
Score = 33.9 bits (76), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Query: 53 LGVILPWTGTPGFMFPNATSSLAKWRDYTLSQAASFVAKNGTIIVCAVSQPYLPFLNNWL 112
+ +LPW + F + S+A + + Q A+FV + T C LP L+NWL
Sbjct: 15 INTMLPWKSSKKF----SNHSIASTSKWLVHQVANFVTWHETAKKCGAKIRVLPILDNWL 70
Query: 113 I 113
I
Sbjct: 71 I 71
>sp|Q1RBL7|YNFA_ECOUT UPF0060 membrane protein YnfA OS=Escherichia coli (strain UTI89 /
UPEC) GN=ynfA PE=3 SV=2
Length = 108
Score = 33.5 bits (75), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 234 GRTYICSCMIYLRPTDGAKLVMKKWIEELQA 264
G Y+C+ +I+LR DG KL + W L A
Sbjct: 64 GGVYVCTALIWLRVVDGVKLTLYDWTGALIA 94
>sp|Q8FHC6|YNFA_ECOL6 UPF0060 membrane protein YnfA OS=Escherichia coli O6:H1 (strain
CFT073 / ATCC 700928 / UPEC) GN=ynfA PE=3 SV=2
Length = 108
Score = 33.5 bits (75), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 234 GRTYICSCMIYLRPTDGAKLVMKKWIEELQA 264
G Y+C+ +I+LR DG KL + W L A
Sbjct: 64 GGVYVCTALIWLRVVDGVKLTLYDWTGALIA 94
>sp|A1ABC7|YNFA_ECOK1 UPF0060 membrane protein YnfA OS=Escherichia coli O1:K1 / APEC
GN=ynfA PE=3 SV=2
Length = 108
Score = 33.5 bits (75), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 234 GRTYICSCMIYLRPTDGAKLVMKKWIEELQA 264
G Y+C+ +I+LR DG KL + W L A
Sbjct: 64 GGVYVCTALIWLRVVDGVKLTLYDWTGALIA 94
>sp|B7M9T5|YNFA_ECO45 UPF0060 membrane protein YnfA OS=Escherichia coli O45:K1 (strain
S88 / ExPEC) GN=ynfA PE=3 SV=1
Length = 108
Score = 33.5 bits (75), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 234 GRTYICSCMIYLRPTDGAKLVMKKWIEELQA 264
G Y+C+ +I+LR DG KL + W L A
Sbjct: 64 GGVYVCTALIWLRVVDGVKLTLYDWTGALIA 94
>sp|B7URS1|YNFA_ECO27 UPF0060 membrane protein YnfA OS=Escherichia coli O127:H6 (strain
E2348/69 / EPEC) GN=ynfA PE=3 SV=1
Length = 108
Score = 33.5 bits (75), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 234 GRTYICSCMIYLRPTDGAKLVMKKWIEELQA 264
G Y+C+ +I+LR DG KL + W L A
Sbjct: 64 GGVYVCTALIWLRVVDGVKLTLYDWTGALIA 94
>sp|A8P5H7|AMPP1_COPC7 Probable Xaa-Pro aminopeptidase P OS=Coprinopsis cinerea (strain
Okayama-7 / 130 / ATCC MYA-4618 / FGSC 9003) GN=AMPP
PE=3 SV=1
Length = 622
Score = 33.1 bits (74), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 51/124 (41%), Gaps = 13/124 (10%)
Query: 175 HLLHILE----LGYNVMYNDV----DMVWLKDPFPYLQGDHDVYFTDDMAAVKPLDHSHD 226
H L++ E +G + YN+ M +P Y G + + +++ VK + ++
Sbjct: 497 HFLNVHEGPQGIGVRIAYNNTALKAGMTVSNEPGYYEDGQYGIRI-ENIVIVKEVKLPNN 555
Query: 227 LPPPGKKGRTYICSCMIYLRPTDGAKLVM--KKWIEELQAEPWSKAKK--ANDQPAFNWA 282
G G ++ C I + D + L KKW+ + E W K ND+ A W
Sbjct: 556 FGDKGYLGFEHVTMCPIQTKLIDASLLTEPEKKWVNDYHQEVWQKVSPLLQNDKRALEWL 615
Query: 283 LNKT 286
+T
Sbjct: 616 KRET 619
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.139 0.458
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 128,187,577
Number of Sequences: 539616
Number of extensions: 5385904
Number of successful extensions: 13753
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 13738
Number of HSP's gapped (non-prelim): 21
length of query: 318
length of database: 191,569,459
effective HSP length: 117
effective length of query: 201
effective length of database: 128,434,387
effective search space: 25815311787
effective search space used: 25815311787
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 61 (28.1 bits)