Query 021054
Match_columns 318
No_of_seqs 151 out of 394
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 07:15:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021054.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021054hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03407 Nucleotid_trans: Nucl 100.0 1.5E-30 3.3E-35 234.1 17.2 153 121-288 3-157 (212)
2 cd02537 GT8_Glycogenin Glycoge 98.4 6.9E-06 1.5E-10 75.8 14.4 159 100-286 8-170 (240)
3 PLN00176 galactinol synthase 98.4 9.2E-06 2E-10 78.9 14.9 187 92-290 21-230 (333)
4 cd04194 GT8_A4GalT_like A4GalT 98.0 3.5E-05 7.5E-10 70.9 10.1 189 96-291 3-204 (248)
5 PF01501 Glyco_transf_8: Glyco 97.7 0.00012 2.5E-09 65.9 8.3 193 96-292 2-211 (250)
6 cd00505 Glyco_transf_8 Members 97.7 0.002 4.2E-08 59.5 15.5 183 95-286 3-200 (246)
7 cd06914 GT8_GNT1 GNT1 is a fun 97.5 0.0029 6.3E-08 60.2 13.8 155 100-286 8-173 (278)
8 PF05637 Glyco_transf_34: gala 97.0 0.00072 1.6E-08 62.8 4.0 115 168-286 59-193 (239)
9 cd06431 GT8_LARGE_C LARGE cata 96.7 0.016 3.4E-07 55.2 10.9 185 95-286 4-208 (280)
10 COG1442 RfaJ Lipopolysaccharid 96.6 0.009 1.9E-07 58.1 8.6 190 96-291 5-207 (325)
11 PLN03182 xyloglucan 6-xylosylt 96.5 0.016 3.4E-07 57.7 9.2 115 169-295 181-318 (429)
12 cd06430 GT8_like_2 GT8_like_2 96.1 0.14 3E-06 49.5 13.6 105 176-286 90-215 (304)
13 PF03314 DUF273: Protein of un 95.6 0.064 1.4E-06 49.1 8.4 101 167-288 26-130 (222)
14 PRK15171 lipopolysaccharide 1, 95.2 0.092 2E-06 51.1 8.8 191 94-291 26-233 (334)
15 PLN03181 glycosyltransferase; 94.8 0.13 2.7E-06 51.5 8.3 107 168-286 181-308 (453)
16 cd06432 GT8_HUGT1_C_like The C 94.6 0.76 1.6E-05 42.8 12.9 107 177-286 89-208 (248)
17 cd06429 GT8_like_1 GT8_like_1 89.5 0.59 1.3E-05 43.9 5.0 83 185-291 116-206 (257)
18 PF11051 Mannosyl_trans3: Mann 84.1 4.3 9.3E-05 38.3 7.7 98 96-204 4-112 (271)
19 cd08579 GDPD_memb_like Glycero 74.3 53 0.0011 29.4 11.3 69 77-145 80-151 (220)
20 PF13704 Glyco_tranf_2_4: Glyc 70.3 45 0.00098 25.5 8.6 82 105-199 4-88 (97)
21 PLN02910 polygalacturonate 4-a 65.2 15 0.00032 39.0 6.1 116 158-281 450-580 (657)
22 cd08580 GDPD_Rv2277c_like Glyc 64.8 1.2E+02 0.0027 28.4 11.9 64 78-142 93-156 (263)
23 PLN02829 Probable galacturonos 64.4 15 0.00032 38.9 6.0 118 157-283 431-564 (639)
24 PLN02742 Probable galacturonos 64.2 89 0.0019 32.6 11.4 104 171-282 342-459 (534)
25 cd02515 Glyco_transf_6 Glycosy 62.2 40 0.00087 32.1 8.0 104 84-198 23-139 (271)
26 cd08563 GDPD_TtGDE_like Glycer 60.7 1.1E+02 0.0024 27.5 10.5 68 78-145 87-157 (230)
27 cd08575 GDPD_GDE4_like Glycero 56.7 1.7E+02 0.0036 27.2 12.0 65 78-143 96-160 (264)
28 KOG4748 Subunit of Golgi manno 54.4 24 0.00052 35.0 5.2 114 168-285 158-293 (364)
29 PLN02523 galacturonosyltransfe 53.0 2.2E+02 0.0048 30.0 12.1 95 176-280 370-481 (559)
30 PLN02867 Probable galacturonos 52.2 39 0.00083 35.3 6.5 114 161-281 323-457 (535)
31 cd08567 GDPD_SpGDE_like Glycer 46.8 2.3E+02 0.0049 25.8 10.6 109 77-188 107-236 (263)
32 PLN02870 Probable galacturonos 45.6 42 0.00091 35.0 5.6 123 161-290 321-467 (533)
33 cd08612 GDPD_GDE4 Glycerophosp 43.8 2.9E+02 0.0063 26.2 12.8 66 78-145 121-186 (300)
34 PLN02659 Probable galacturonos 43.5 39 0.00085 35.2 5.0 124 160-290 321-468 (534)
35 PLN02718 Probable galacturonos 43.1 28 0.00062 36.7 4.0 108 170-285 406-533 (603)
36 PF03414 Glyco_transf_6: Glyco 42.4 1.1E+02 0.0023 30.2 7.6 97 92-200 98-205 (337)
37 COG0263 ProB Glutamate 5-kinas 41.7 2.8E+02 0.0061 27.7 10.3 88 107-203 85-185 (369)
38 PF08235 LNS2: LNS2 (Lipin/Ned 41.0 56 0.0012 28.6 4.9 45 75-119 25-71 (157)
39 COG1438 ArgR Arginine represso 39.4 79 0.0017 27.6 5.6 61 80-140 79-145 (150)
40 cd08565 GDPD_pAtGDE_like Glyce 39.3 1.8E+02 0.004 26.4 8.4 67 78-145 80-151 (235)
41 cd08573 GDPD_GDE1 Glycerophosp 38.9 1.5E+02 0.0033 27.4 7.9 67 78-145 87-155 (258)
42 PF00535 Glycos_transf_2: Glyc 37.3 1.5E+02 0.0033 23.4 6.9 102 94-212 1-113 (169)
43 cd08556 GDPD Glycerophosphodie 34.8 2.1E+02 0.0046 24.1 7.7 67 79-145 48-115 (189)
44 PF02863 Arg_repressor_C: Argi 34.2 75 0.0016 23.7 4.1 57 83-139 3-65 (70)
45 cd08574 GDPD_GDE_2_3_6 Glycero 32.5 4E+02 0.0086 24.5 10.9 67 78-145 112-184 (252)
46 cd08583 PI-PLCc_GDPD_SF_unchar 31.6 3.9E+02 0.0084 24.1 10.3 66 78-143 84-156 (237)
47 PF04765 DUF616: Protein of un 31.0 85 0.0019 30.5 4.9 110 173-288 142-284 (305)
48 PRK14762 membrane protein; Pro 30.8 68 0.0015 19.6 2.6 11 46-56 13-23 (27)
49 cd08582 GDPD_like_2 Glyceropho 28.3 2.6E+02 0.0057 25.0 7.5 130 78-213 85-229 (233)
50 TIGR03472 HpnI hopanoid biosyn 27.9 4.9E+02 0.011 25.2 9.8 92 94-201 44-145 (373)
51 cd02526 GT2_RfbF_like RfbF is 26.4 3.7E+02 0.008 23.3 8.0 92 96-203 2-96 (237)
52 cd08564 GDPD_GsGDE_like Glycer 24.4 3.5E+02 0.0075 25.0 7.7 66 77-143 105-171 (265)
53 TIGR00725 conserved hypothetic 23.9 2.5E+02 0.0054 24.3 6.2 54 78-134 101-154 (159)
54 cd08566 GDPD_AtGDE_like Glycer 23.8 4.8E+02 0.011 23.7 8.5 65 77-145 85-149 (240)
55 cd08601 GDPD_SaGlpQ_like Glyce 23.3 2.6E+02 0.0056 25.5 6.6 70 76-145 95-171 (256)
56 cd08568 GDPD_TmGDE_like Glycer 23.1 4.2E+02 0.0092 23.6 7.8 65 78-145 78-142 (226)
57 PF02484 Rhabdo_NV: Rhabdoviru 22.1 1.1E+02 0.0023 24.6 3.1 22 178-199 20-41 (111)
58 PF03686 UPF0146: Uncharacteri 22.0 58 0.0013 27.6 1.7 71 171-263 24-95 (127)
59 PRK11204 N-glycosyltransferase 21.2 7.1E+02 0.015 24.2 9.6 90 94-202 57-154 (420)
60 PLN02769 Probable galacturonos 21.0 9.9E+02 0.021 25.7 10.8 117 171-291 441-566 (629)
61 TIGR01529 argR_whole arginine 21.0 2.5E+02 0.0054 24.0 5.5 59 81-139 72-140 (146)
62 smart00481 POLIIIAc DNA polyme 20.6 2.8E+02 0.0061 19.6 5.0 42 79-120 14-55 (67)
63 PRK03341 arginine repressor; P 20.2 2.3E+02 0.0049 25.1 5.2 58 83-140 97-160 (168)
No 1
>PF03407 Nucleotid_trans: Nucleotide-diphospho-sugar transferase; InterPro: IPR005069 Proteins in this family have been been predicted to be nucleotide-diphospho-sugar transferases [].
Probab=99.97 E-value=1.5e-30 Score=234.06 Aligned_cols=153 Identities=33% Similarity=0.571 Sum_probs=131.2
Q ss_pred CccEEEEEeCHHHHHHHhccCCCceEEcCC-CCCCccccccCchhHHHHHhhhHHHHHHHHHcCCeEEEeecceeeecCC
Q 021054 121 QDQVLVIAEDYATLYKVNGRWPGHAVLVPP-APDSQTAHKFGSQGFFNFTSRRPCHLLHILELGYNVMYNDVDMVWLKDP 199 (318)
Q Consensus 121 ~~~vlVvAlD~~a~~~c~~~~pg~~v~~~~-~~d~~~~~~~gs~~f~~m~~~K~~~l~~lL~lGy~VL~sDvDVVWLrdP 199 (318)
.+|++|+|+|+++++.|++++++|..+... .........+++++|.+++|.|+.+++++|++||+|+++|+|+||+|||
T Consensus 3 ~~~~lv~a~D~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~~~~~~~L~~G~~vl~~D~Dvv~~~dp 82 (212)
T PF03407_consen 3 IDNFLVVALDEETYDALEELGPPCFYFPSDASESEDSAFRFGSKAFQKLTWLKPKVLLDLLELGYDVLFSDADVVWLRDP 82 (212)
T ss_pred cccEEEEEECHHHHHHHHhcCCCeEEEecccccccchhhhcCCHHHHHHHHHHHHHHHHHHHcCCceEEecCCEEEecCc
Confidence 489999999999999999998887776543 2233466789999999999999999999999999999999999999999
Q ss_pred cCCc-CCCCceeeecccccccCCCCCCCCCCCCCCCCcccceeEEEEecChHHHHHHHHHHHHHHcCCcccCCCCCChHH
Q 021054 200 FPYL-QGDHDVYFTDDMAAVKPLDHSHDLPPPGKKGRTYICSCMIYLRPTDGAKLVMKKWIEELQAEPWSKAKKANDQPA 278 (318)
Q Consensus 200 ~~~~-~~~aDv~~s~D~~~~~~~d~~~~~p~~g~~g~~~~NtGf~y~R~T~~t~~f~~~W~~~l~~~p~~~~~~~~DQ~a 278 (318)
++++ ..++|+.+++|+..+.+.+ ..+..+|+||||+|+|++|++|+++|.+.+.+.+ +.+||.+
T Consensus 83 ~~~~~~~~~Di~~~~d~~~~~~~~----------~~~~~~n~G~~~~r~t~~~~~~~~~w~~~~~~~~-----~~~DQ~~ 147 (212)
T PF03407_consen 83 LPYFENPDADILFSSDGWDGTNSD----------RNGNLVNTGFYYFRPTPRTIAFLEDWLERMAESP-----GCWDQQA 147 (212)
T ss_pred HHhhccCCCceEEecCCCcccchh----------hcCCccccceEEEecCHHHHHHHHHHHHHHHhCC-----CcchHHH
Confidence 9999 7899999999976532211 1124579999999999999999999999998853 6789999
Q ss_pred HHHHHhhcCC
Q 021054 279 FNWALNKTAG 288 (318)
Q Consensus 279 fN~ll~~~~~ 288 (318)
||+++++...
T Consensus 148 ~n~~l~~~~~ 157 (212)
T PF03407_consen 148 FNELLREQAA 157 (212)
T ss_pred HHHHHHhccc
Confidence 9999999773
No 2
>cd02537 GT8_Glycogenin Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen. Glycogenin initiates the biosynthesis of glycogen by incorporating glucose residues through a self-glucosylation reaction at a Tyr residue, and then acts as substrate for chain elongation by glycogen synthase and branching enzyme. It contains a conserved DxD motif and an N-terminal beta-alpha-beta Rossmann-like fold that are common to the nucleotide-binding domains of most glycosyltransferases. The DxD motif is essential for coordination of the catalytic divalent cation, most commonly Mn2+. Glycogenin can be classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. It is placed in glycosyltransferase family 8 which includes lipopolysaccharide glucose and galactose transferases and galactinol synthases.
Probab=98.42 E-value=6.9e-06 Score=75.84 Aligned_cols=159 Identities=16% Similarity=0.157 Sum_probs=95.8
Q ss_pred eCcchHHHHHHHHHHhhhcCCCccEEEEEe---CHHHHHHHhccCCCceEEcCCCCCCccccccCchhHHHHHhhhHHHH
Q 021054 100 VSQPYLPFLNNWLISISRQKHQDQVLVIAE---DYATLYKVNGRWPGHAVLVPPAPDSQTAHKFGSQGFFNFTSRRPCHL 176 (318)
Q Consensus 100 ~N~~y~~~l~Nwl~sl~~~gi~~~vlVvAl---D~~a~~~c~~~~pg~~v~~~~~~d~~~~~~~gs~~f~~m~~~K~~~l 176 (318)
+|.+|+.-+..-+.|+++.+-..+++|+.. .++..+.+++. +..+...+..+...........+...+|.|..+.
T Consensus 8 ~~~~Y~~~a~vl~~SL~~~~~~~~~~vl~~~~is~~~~~~L~~~--~~~~~~v~~i~~~~~~~~~~~~~~~~~~~kl~~~ 85 (240)
T cd02537 8 TNDDYLPGALVLGYSLRKVGSSYDLVVLVTPGVSEESREALEEV--GWIVREVEPIDPPDSANLLKRPRFKDTYTKLRLW 85 (240)
T ss_pred cChhHHHHHHHHHHHHHhcCCCCCEEEEECCCCCHHHHHHHHHc--CCEEEecCccCCcchhhhccchHHHHHhHHHHhc
Confidence 566999988888999988654334544443 45555666665 3333221111111111111234556677786555
Q ss_pred HHHHHcCC-eEEEeecceeeecCCcCCcCCCCceeeecccccccCCCCCCCCCCCCCCCCcccceeEEEEecChHHHHHH
Q 021054 177 LHILELGY-NVMYNDVDMVWLKDPFPYLQGDHDVYFTDDMAAVKPLDHSHDLPPPGKKGRTYICSCMIYLRPTDGAKLVM 255 (318)
Q Consensus 177 ~~lL~lGy-~VL~sDvDVVWLrdP~~~~~~~aDv~~s~D~~~~~~~d~~~~~p~~g~~g~~~~NtGf~y~R~T~~t~~f~ 255 (318)
. + .+| .|++.|+|++.++|+-+.|..+..+....|.. . ..++|+|+|.++++.. ..
T Consensus 86 ~-l--~~~drvlylD~D~~v~~~i~~Lf~~~~~~~a~~d~~---------------~--~~~fNsGv~l~~~~~~---~~ 142 (240)
T cd02537 86 N-L--TEYDKVVFLDADTLVLRNIDELFDLPGEFAAAPDCG---------------W--PDLFNSGVFVLKPSEE---TF 142 (240)
T ss_pred c-c--cccceEEEEeCCeeEccCHHHHhCCCCceeeecccC---------------c--cccccceEEEEcCCHH---HH
Confidence 4 2 256 59999999999999877666422222222210 0 2479999999999764 34
Q ss_pred HHHHHHHHcCCcccCCCCCChHHHHHHHhhc
Q 021054 256 KKWIEELQAEPWSKAKKANDQPAFNWALNKT 286 (318)
Q Consensus 256 ~~W~~~l~~~p~~~~~~~~DQ~afN~ll~~~ 286 (318)
+...+.+.+.. .....||.++|.++++.
T Consensus 143 ~~~~~~~~~~~---~~~~~DQdiLN~~~~~~ 170 (240)
T cd02537 143 NDLLDALQDTP---SFDGGDQGLLNSYFSDR 170 (240)
T ss_pred HHHHHHHhccC---CCCCCCHHHHHHHHcCC
Confidence 44445554431 13578999999999765
No 3
>PLN00176 galactinol synthase
Probab=98.38 E-value=9.2e-06 Score=78.89 Aligned_cols=187 Identities=14% Similarity=0.143 Sum_probs=107.3
Q ss_pred CCeEEEE--EeCcchHHHHHHHHHHhhhcCCCccEEEEEeCH---HHHHHHhccCCCceEEcCCCCC-CccccccCchhH
Q 021054 92 NGTIIVC--AVSQPYLPFLNNWLISISRQKHQDQVLVIAEDY---ATLYKVNGRWPGHAVLVPPAPD-SQTAHKFGSQGF 165 (318)
Q Consensus 92 ~~tVIVt--~~N~~y~~~l~Nwl~sl~~~gi~~~vlVvAlD~---~a~~~c~~~~pg~~v~~~~~~d-~~~~~~~gs~~f 165 (318)
.+...|| .+|..|..=+.....|+++.|-...++|+..++ +..+.+++. ||.+...+... ......+. ..+
T Consensus 21 ~~~AyVT~L~~n~~Y~~Ga~vL~~SLr~~~s~~~lVvlVt~dVp~e~r~~L~~~--g~~V~~V~~i~~~~~~~~~~-~~~ 97 (333)
T PLN00176 21 AKRAYVTFLAGNGDYVKGVVGLAKGLRKVKSAYPLVVAVLPDVPEEHRRILVSQ--GCIVREIEPVYPPENQTQFA-MAY 97 (333)
T ss_pred CceEEEEEEecCcchHHHHHHHHHHHHHhCCCCCEEEEECCCCCHHHHHHHHHc--CCEEEEecccCCcccccccc-cch
Confidence 4566666 468899998899999999988655666655554 444556655 66665322111 11111232 234
Q ss_pred HHHHhhhHHHHHHHHHcCC-eEEEeecceeeecCCcCCcCCCCc-eeeecccccccCCCC--------------CCCCC-
Q 021054 166 FNFTSRRPCHLLHILELGY-NVMYNDVDMVWLKDPFPYLQGDHD-VYFTDDMAAVKPLDH--------------SHDLP- 228 (318)
Q Consensus 166 ~~m~~~K~~~l~~lL~lGy-~VL~sDvDVVWLrdP~~~~~~~aD-v~~s~D~~~~~~~d~--------------~~~~p- 228 (318)
..+++.|.++-. +. .| .|+|.|+|++-++|--+.|.-..+ +....|++......+ ...+|
T Consensus 98 ~~i~~tKl~iw~-l~--~ydkvlyLDaD~lv~~nid~Lf~~~~~~~aAV~dc~~~~~~~~~p~~~~~~c~~~~~~~~wp~ 174 (333)
T PLN00176 98 YVINYSKLRIWE-FV--EYSKMIYLDGDIQVFENIDHLFDLPDGYFYAVMDCFCEKTWSHTPQYKIGYCQQCPDKVTWPA 174 (333)
T ss_pred hhhhhhhhhhcc-cc--ccceEEEecCCEEeecChHHHhcCCCcceEEEecccccccccccccccccccccchhhccchh
Confidence 455666776433 33 46 599999999999998666653222 333334321100000 00111
Q ss_pred CCCCCCCcccceeEEEEecChHHHHHHHHHHHHHHcCCcccCCCCCChHHHHHHHhhcCCCc
Q 021054 229 PPGKKGRTYICSCMIYLRPTDGAKLVMKKWIEELQAEPWSKAKKANDQPAFNWALNKTAGQV 290 (318)
Q Consensus 229 ~~g~~g~~~~NtGf~y~R~T~~t~~f~~~W~~~l~~~p~~~~~~~~DQ~afN~ll~~~~~~~ 290 (318)
..|.....++|+|++.+.|+..+. +...+.+...+ .....||.+||.++++....+
T Consensus 175 ~~g~~~~~yFNSGVlvinps~~~~---~~ll~~l~~~~---~~~f~DQD~LN~~F~~~~~~L 230 (333)
T PLN00176 175 ELGPPPPLYFNAGMFVFEPSLSTY---EDLLETLKITP---PTPFAEQDFLNMFFRDIYKPI 230 (333)
T ss_pred hccCCCCCeEEeEEEEEEcCHHHH---HHHHHHHHhcC---CCCCCCHHHHHHHHcCcEEEC
Confidence 111111248999999999987663 33333443322 125689999999998644333
No 4
>cd04194 GT8_A4GalT_like A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The members of this family of glycosyltransferases catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The enzymes exhibit broad substrate specificities. The known functions found in this family include: Alpha-1,4-galactosyltransferase, LOS-alpha-1,3-D-galactosyltransferase, UDP-glucose:(galactosyl) LPS alpha1,2-glucosyltransferase, UDP-galactose: (glucosyl) LPS alpha1,2-galactosyltransferase, and UDP-glucose:(glucosyl) LPS alpha1,2-glucosyltransferase. Alpha-1,4-galactosyltransferase from N. meningitidis adds an alpha-galactose from UDP-Gal (the donor) to a terminal lactose (the acceptor) of the LOS structure of outer membrane. LOSs are virulence factors that enable the organism to evade the immune sys
Probab=98.02 E-value=3.5e-05 Score=70.87 Aligned_cols=189 Identities=17% Similarity=0.133 Sum_probs=105.7
Q ss_pred EEEEeCcchHHHHHHHHHHhhhcCC--CccEEEEEeC--HHHHHHHhccCC--Cce--EEcCCCCCCccccccCchhHHH
Q 021054 96 IVCAVSQPYLPFLNNWLISISRQKH--QDQVLVIAED--YATLYKVNGRWP--GHA--VLVPPAPDSQTAHKFGSQGFFN 167 (318)
Q Consensus 96 IVt~~N~~y~~~l~Nwl~sl~~~gi--~~~vlVvAlD--~~a~~~c~~~~p--g~~--v~~~~~~d~~~~~~~gs~~f~~ 167 (318)
|+.++|..|..-+..-+.|+.+..- .-++.|++.| ++..+.+++... ++. ...-...+.... ......|..
T Consensus 3 I~~~~d~~y~~~~~~~l~Sl~~~~~~~~~~~~il~~~is~~~~~~L~~~~~~~~~~i~~~~i~~~~~~~~-~~~~~~~~~ 81 (248)
T cd04194 3 IVFAIDDNYAPYLAVTIKSILANNSKRDYDFYILNDDISEENKKKLKELLKKYNSSIEFIKIDNDDFKFF-PATTDHISY 81 (248)
T ss_pred EEEEecHhhHHHHHHHHHHHHhcCCCCceEEEEEeCCCCHHHHHHHHHHHHhcCCeEEEEEcCHHHHhcC-CcccccccH
Confidence 7889999999988888888876332 2356666654 556666665421 322 221110000000 001223334
Q ss_pred HHhhhHHHHHHHHHcCC-eEEEeecceeeecCCcCCcCC---CCceeeecccccccCCCCCCCCCCCCCCCCcccceeEE
Q 021054 168 FTSRRPCHLLHILELGY-NVMYNDVDMVWLKDPFPYLQG---DHDVYFTDDMAAVKPLDHSHDLPPPGKKGRTYICSCMI 243 (318)
Q Consensus 168 m~~~K~~~l~~lL~lGy-~VL~sDvDVVWLrdP~~~~~~---~aDv~~s~D~~~~~~~d~~~~~p~~g~~g~~~~NtGf~ 243 (318)
++..|..+ -+++. +| .|+|.|+|++.++|.-+.+.. +.-+....|......... .....+..+..++|+|+|
T Consensus 82 ~~y~rl~l-~~ll~-~~~rvlylD~D~lv~~di~~L~~~~~~~~~~aa~~d~~~~~~~~~--~~~~~~~~~~~yfNsGv~ 157 (248)
T cd04194 82 ATYYRLLI-PDLLP-DYDKVLYLDADIIVLGDLSELFDIDLGDNLLAAVRDPFIEQEKKR--KRRLGGYDDGSYFNSGVL 157 (248)
T ss_pred HHHHHHHH-HHHhc-ccCEEEEEeCCEEecCCHHHHhcCCcCCCEEEEEecccHHHHHHH--HhhcCCCcccceeeecch
Confidence 44455543 44555 67 499999999999988766653 233444455432100000 000001123458999999
Q ss_pred EEecChH-HHHHHHHHHHHHHcCCcccCCCCCChHHHHHHHhhcCCCcc
Q 021054 244 YLRPTDG-AKLVMKKWIEELQAEPWSKAKKANDQPAFNWALNKTAGQVC 291 (318)
Q Consensus 244 y~R~T~~-t~~f~~~W~~~l~~~p~~~~~~~~DQ~afN~ll~~~~~~~~ 291 (318)
.+..+.- ...+.+++.+.+...+ ......||.++|.++.+....++
T Consensus 158 l~nl~~~r~~~~~~~~~~~~~~~~--~~~~~~DQd~LN~~~~~~~~~L~ 204 (248)
T cd04194 158 LINLKKWREENITEKLLELIKEYG--GRLIYPDQDILNAVLKDKILYLP 204 (248)
T ss_pred heeHHHHHHhhhHHHHHHHHHhCC--CceeeCChHHHHHHHhCCeEEcC
Confidence 9987642 2345666666665432 12367999999999987644444
No 5
>PF01501 Glyco_transf_8: Glycosyl transferase family 8; InterPro: IPR002495 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 8 GT8 from CAZY comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase (2.4.1.44 from EC), lipopolysaccharide glucosyltransferase 1 (2.4.1.58 from EC), glycogenin glucosyltransferase (2.4.1.186 from EC), inositol 1-alpha-galactosyltransferase (2.4.1.123 from EC). These enzymes have a distant similarity to family GT_24. ; GO: 0016757 transferase activity, transferring glycosyl groups; PDB: 1LL0_D 1ZCV_A 3USR_A 3V90_A 1ZCU_A 1ZCT_A 3V91_A 1ZCY_A 1ZDG_A 1ZDF_A ....
Probab=97.74 E-value=0.00012 Score=65.95 Aligned_cols=193 Identities=17% Similarity=0.125 Sum_probs=101.4
Q ss_pred EEEEeCcchHHHHHHHHHHhhhcCC---CccEEEEEe--CHHHHHHHhccCCC---c-eEEcCCCCCCc--cccccCchh
Q 021054 96 IVCAVSQPYLPFLNNWLISISRQKH---QDQVLVIAE--DYATLYKVNGRWPG---H-AVLVPPAPDSQ--TAHKFGSQG 164 (318)
Q Consensus 96 IVt~~N~~y~~~l~Nwl~sl~~~gi---~~~vlVvAl--D~~a~~~c~~~~pg---~-~v~~~~~~d~~--~~~~~gs~~ 164 (318)
|+..+|..|..-+..-+.|+++..- ..++.++.. .++..+.+++.... . .+......... .........
T Consensus 2 i~~~~d~~y~~~~~v~i~Sl~~~~~~~~~~~i~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (250)
T PF01501_consen 2 IVLACDDNYLEGAAVLIKSLLKNNPDPSNLHIYIITDDISEEDFEKLRALAAEVIEIEPIEFPDISMLEEFQFNSPSKRH 81 (250)
T ss_dssp EEEECSGGGHHHHHHHHHHHHHTTTT-SSEEEEEEESSS-HHHHHHHHHHSCCCCTTECEEETSGGHHH--TTS-HCCTC
T ss_pred EEEEeCHHHHHHHHHHHHHHHHhccccccceEEEecCCCCHHHHHHHhhhcccccceeeeccchHHhhhhhhhccccccc
Confidence 7889999999999999999888653 223433332 33444455443221 1 11111110000 011122234
Q ss_pred HHHHHhhhHHHHHHHHHcCC-eEEEeecceeeecCCcCCcCC---CCceeeecccc-cccCCCCCCCCCCCCCCCCcccc
Q 021054 165 FFNFTSRRPCHLLHILELGY-NVMYNDVDMVWLKDPFPYLQG---DHDVYFTDDMA-AVKPLDHSHDLPPPGKKGRTYIC 239 (318)
Q Consensus 165 f~~m~~~K~~~l~~lL~lGy-~VL~sDvDVVWLrdP~~~~~~---~aDv~~s~D~~-~~~~~d~~~~~p~~g~~g~~~~N 239 (318)
+..++..|..+-. ++ .+| .|+|.|+|++.++|.-+.+.- +.-+....|.. ...+..........+..+..++|
T Consensus 82 ~~~~~~~rl~i~~-ll-~~~drilyLD~D~lv~~dl~~lf~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~fN 159 (250)
T PF01501_consen 82 FSPATFARLFIPD-LL-PDYDRILYLDADTLVLGDLDELFDLDLQGKYLAAVEDESFDNFPNKRFPFSERKQPGNKPYFN 159 (250)
T ss_dssp GGGGGGGGGGHHH-HS-TTSSEEEEE-TTEEESS-SHHHHC---TTSSEEEEE----HHHHTSTTSSEEECESTTTTSEE
T ss_pred ccHHHHHHhhhHH-HH-hhcCeEEEEcCCeeeecChhhhhcccchhhhccccccchhhhhhhcccchhhcccCccccccc
Confidence 4556667774444 44 667 599999999999998776652 22233333300 00000000000001112246899
Q ss_pred eeEEEEecChHHHH-HHHHHHHHHHcCCcccCCCCCChHHHHHHHhhcCCCcce
Q 021054 240 SCMIYLRPTDGAKL-VMKKWIEELQAEPWSKAKKANDQPAFNWALNKTAGQVCS 292 (318)
Q Consensus 240 tGf~y~R~T~~t~~-f~~~W~~~l~~~p~~~~~~~~DQ~afN~ll~~~~~~~~v 292 (318)
+|++.+.++.-... +.+.+...+.... ......||.++|.++......++.
T Consensus 160 sGv~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~DQ~~ln~~~~~~~~~L~~ 211 (250)
T PF01501_consen 160 SGVMLFNPSKWRKENILQKLIEWLEQNG--MKLGFPDQDILNIVFYGNIKPLPC 211 (250)
T ss_dssp EEEEEEEHHHHHHHHHHHHHHHHHHHTT--TT-SSCHHHHHHHHHTTGEEEEEG
T ss_pred CcEEEEeechhhhhhhhhhhhhhhhhcc--cccCcCchHHHhhhccceeEEECc
Confidence 99999998877654 5555555544431 123579999999999865554444
No 6
>cd00505 Glyco_transf_8 Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis. Members of this family are involved in lipopolysaccharide biosynthesis and glycogen synthesis. GT-8 comprises enzymes with a number of known activities: lipopolysaccharide galactosyltransferase, lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase, and N-acetylglucosaminyltransferase. GT-8 enzymes contains a conserved DXD motif which is essential in the coordination of a catalytic divalent cation, most commonly Mn2+.
Probab=97.67 E-value=0.002 Score=59.45 Aligned_cols=183 Identities=16% Similarity=0.162 Sum_probs=98.5
Q ss_pred EEEEEeCcchHHHHHHHHHHhhhcCC-CccEEEEEeC--HHHHHHHhccC--CCce-EEcC-CCCCCccccccCchhHHH
Q 021054 95 IIVCAVSQPYLPFLNNWLISISRQKH-QDQVLVIAED--YATLYKVNGRW--PGHA-VLVP-PAPDSQTAHKFGSQGFFN 167 (318)
Q Consensus 95 VIVt~~N~~y~~~l~Nwl~sl~~~gi-~~~vlVvAlD--~~a~~~c~~~~--pg~~-v~~~-~~~d~~~~~~~gs~~f~~ 167 (318)
++++.++..|+.-+.--+.|+.+..- .-++.|++.| ++..+.+.+.. .++. .+.+ +...... .....+.+..
T Consensus 3 i~~~a~d~~y~~~~~v~i~Sl~~~~~~~~~~~il~~~is~~~~~~L~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~ 81 (246)
T cd00505 3 IVIVATGDEYLRGAIVLMKSVLRHRTKPLRFHVLTNPLSDTFKAALDNLRKLYNFNYELIPVDILDSVD-SEHLKRPIKI 81 (246)
T ss_pred EEEEecCcchhHHHHHHHHHHHHhCCCCeEEEEEEccccHHHHHHHHHHHhccCceEEEEeccccCcch-hhhhcCcccc
Confidence 45556666999988888888766432 2456666543 33444444431 1232 1221 1111100 0000112223
Q ss_pred HHhhhHHHHHHHHHcCC-eEEEeecceeeecCCcCCcCC---CCceeeecccccc---cCCCCCCCCCCCCCCCCcccce
Q 021054 168 FTSRRPCHLLHILELGY-NVMYNDVDMVWLKDPFPYLQG---DHDVYFTDDMAAV---KPLDHSHDLPPPGKKGRTYICS 240 (318)
Q Consensus 168 m~~~K~~~l~~lL~lGy-~VL~sDvDVVWLrdP~~~~~~---~aDv~~s~D~~~~---~~~d~~~~~p~~g~~g~~~~Nt 240 (318)
.+..|.. +-+++. ++ .|+|.|+|++-++|.-+.+.- +.-+.+..|.... ......... ..+..++|+
T Consensus 82 ~~y~RL~-i~~llp-~~~kvlYLD~D~iv~~di~~L~~~~l~~~~~aav~d~~~~~~~~~~~~~~~~----~~~~~yfNs 155 (246)
T cd00505 82 VTLTKLH-LPNLVP-DYDKILYVDADILVLTDIDELWDTPLGGQELAAAPDPGDRREGKYYRQKRSH----LAGPDYFNS 155 (246)
T ss_pred ceeHHHH-HHHHhh-ccCeEEEEcCCeeeccCHHHHhhccCCCCeEEEccCchhhhccchhhcccCC----CCCCCceee
Confidence 3444553 445677 78 599999999999988766653 2334444443210 000000001 122458999
Q ss_pred eEEEEecChHH-HHHHHHHHHHHHcCCcccCCCCCChHHHHHHHhhc
Q 021054 241 CMIYLRPTDGA-KLVMKKWIEELQAEPWSKAKKANDQPAFNWALNKT 286 (318)
Q Consensus 241 Gf~y~R~T~~t-~~f~~~W~~~l~~~p~~~~~~~~DQ~afN~ll~~~ 286 (318)
|+|.+..+.-. ..+.+...+...... ......||+++|.++.+.
T Consensus 156 GVmlinl~~~r~~~~~~~~~~~~~~~~--~~~~~~DQd~LN~~~~~~ 200 (246)
T cd00505 156 GVFVVNLSKERRNQLLKVALEKWLQSL--SSLSGGDQDLLNTFFKQV 200 (246)
T ss_pred eeEEEechHHHHHHHHHHHHHHHHhhc--ccCccCCcHHHHHHHhcC
Confidence 99999998874 455555544333210 123679999999999876
No 7
>cd06914 GT8_GNT1 GNT1 is a fungal enzyme that belongs to the GT 8 family. N-acetylglucosaminyltransferase is a fungal enzyme that catalyzes the addition of N-acetyl-D-glucosamine to mannotetraose side chains by an alpha 1-2 linkage during the synthesis of mannan. The N-acetyl-D-glucosamine moiety in mannan plays a role in the attachment of mannan to asparagine residues in proteins. The mannotetraose and its N-acetyl-D-glucosamine derivative side chains of mannan are the principle immunochemical determinants on the cell surface. N-acetylglucosaminyltransferase is a member of glycosyltransferase family 8, which are, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed, retaining glycosyltransferases.
Probab=97.47 E-value=0.0029 Score=60.21 Aligned_cols=155 Identities=12% Similarity=0.078 Sum_probs=88.3
Q ss_pred eCcchHHHHHHHHHHhhhcCCCccEEEEEeCH---HHHHHHhc-----cCCCceEEcCCCCCCccccccCchhHHHHHhh
Q 021054 100 VSQPYLPFLNNWLISISRQKHQDQVLVIAEDY---ATLYKVNG-----RWPGHAVLVPPAPDSQTAHKFGSQGFFNFTSR 171 (318)
Q Consensus 100 ~N~~y~~~l~Nwl~sl~~~gi~~~vlVvAlD~---~a~~~c~~-----~~pg~~v~~~~~~d~~~~~~~gs~~f~~m~~~ 171 (318)
+|.+|+.-+.....++++.|-....+++.-+. .+.+...+ ..-++.+...+...... +++.|.. ++.
T Consensus 8 Tn~~YL~gAlvL~~sLr~~gs~~dlVvLvt~~~~~~~~~~~~~~~~~l~~~~~~v~~v~~~~~~~----~~~~~~~-~~t 82 (278)
T cd06914 8 TNADYLCNALILFEQLRRLGSKAKLVLLVPETLLDRNLDDFVRRDLLLARDKVIVKLIPVIIASG----GDAYWAK-SLT 82 (278)
T ss_pred cChhHHHHHHHHHHHHHHhCCCCCEEEEECCCCChhhhhhHHHHHHHhhccCcEEEEcCcccCCC----CCccHHH-HHH
Confidence 48999998888899999988744444443222 22111110 11133332211111111 2223322 355
Q ss_pred hHHHHHHHHHcCC-eEEEeecceeeecCCcCCcCCC-CceeeecccccccCCCCCCCCCCCCCCCCcccceeEEEEecCh
Q 021054 172 RPCHLLHILELGY-NVMYNDVDMVWLKDPFPYLQGD-HDVYFTDDMAAVKPLDHSHDLPPPGKKGRTYICSCMIYLRPTD 249 (318)
Q Consensus 172 K~~~l~~lL~lGy-~VL~sDvDVVWLrdP~~~~~~~-aDv~~s~D~~~~~~~d~~~~~p~~g~~g~~~~NtGf~y~R~T~ 249 (318)
|..+-.. ..| .|+|.|+|++-++|.-+.|.-+ ..-+.+.+. +.++|+|+|.+.|+.
T Consensus 83 Kl~~~~l---~~y~kvlyLDaD~l~~~~ideLf~~~~~~~~Aap~~-------------------~~~FNSGvmvi~ps~ 140 (278)
T cd06914 83 KLRAFNQ---TEYDRIIYFDSDSIIRHPMDELFFLPNYIKFAAPRA-------------------YWKFASHLMVIKPSK 140 (278)
T ss_pred HHHhccc---cceeeEEEecCChhhhcChHHHhcCCcccceeeecC-------------------cceecceeEEEeCCH
Confidence 6555442 457 5999999999999876555432 111111110 127999999999999
Q ss_pred HHH-HHHHHHHHHHHcCCcccCCCCCChHHHHHHHhhc
Q 021054 250 GAK-LVMKKWIEELQAEPWSKAKKANDQPAFNWALNKT 286 (318)
Q Consensus 250 ~t~-~f~~~W~~~l~~~p~~~~~~~~DQ~afN~ll~~~ 286 (318)
.+- ++++...+.... ..+..||.++|.++.+.
T Consensus 141 ~~~~~l~~~~~~~~~~-----~~~~~DQdiLN~~~~~~ 173 (278)
T cd06914 141 EAFKELMTEILPAYLN-----KKNEYDMDLINEEFYNS 173 (278)
T ss_pred HHHHHHHHHHHHhccc-----CCCCCChHHHHHHHhCC
Confidence 774 444444444322 13678999999999876
No 8
>PF05637 Glyco_transf_34: galactosyl transferase GMA12/MNN10 family; InterPro: IPR008630 This family contains a number of glycosyltransferase enzymes that contain a DXD motif. This family includes a number of Caenorhabditis elegans homologues where the DXD is replaced by DXH. Some members of this family are included in glycosyltransferase family 34.; GO: 0016758 transferase activity, transferring hexosyl groups, 0016021 integral to membrane; PDB: 2P72_B 2P73_A 2P6W_A.
Probab=96.97 E-value=0.00072 Score=62.79 Aligned_cols=115 Identities=14% Similarity=0.092 Sum_probs=22.0
Q ss_pred HHhhhHHHHHHHHHcC---CeEEEeecceeeecCC-cC---CcCC--CC------ceee-eccccccc----CCCCCCCC
Q 021054 168 FTSRRPCHLLHILELG---YNVMYNDVDMVWLKDP-FP---YLQG--DH------DVYF-TDDMAAVK----PLDHSHDL 227 (318)
Q Consensus 168 m~~~K~~~l~~lL~lG---y~VL~sDvDVVWLrdP-~~---~~~~--~a------Dv~~-s~D~~~~~----~~d~~~~~ 227 (318)
..|.|+.++++.+..= ==|++.|.|++.. || ++ ++.. .- |+-+ .-+..... ..+..+-.
T Consensus 59 ~~W~K~~~lr~~m~~~P~~~wv~~lD~Dali~-n~~~~L~~~il~p~~L~~~~~r~~~~~p~~~~~~~~~~~~~~~~~li 137 (239)
T PF05637_consen 59 GSWAKIPALRAAMKKYPEAEWVWWLDSDALIM-NPDFSLEEHILSPSRLDSLLLRDVPIVPPDSIIKTYSVIDGNDIHLI 137 (239)
T ss_dssp HHHTHHHHHHHHHHH-TT-SEEEEE-TTEEE-------------------------------------------------
T ss_pred hhhHHHHHHHHHHHhCCCCCEEEEEcCCeEEE-ecccccccccccccccccccccccccccccccccccccccccccccc
Confidence 4699999999999652 3489999999985 44 22 2211 00 1110 00100000 00000001
Q ss_pred CCCCCCCCcccceeEEEEecChHHHHHHHHHHHHHHcCCcccCCCCCChHHHHHHHhhc
Q 021054 228 PPPGKKGRTYICSCMIYLRPTDGAKLVMKKWIEELQAEPWSKAKKANDQPAFNWALNKT 286 (318)
Q Consensus 228 p~~g~~g~~~~NtGf~y~R~T~~t~~f~~~W~~~l~~~p~~~~~~~~DQ~afN~ll~~~ 286 (318)
.. .....+|+|+|++|.++-|+.|++.|.+.+............||.||-.+++..
T Consensus 138 ~t---~d~~gLNtGsFliRns~ws~~fLd~w~~~~~~~~~~~~~~~~EQsAl~~ll~~~ 193 (239)
T PF05637_consen 138 IT---QDWNGLNTGSFLIRNSPWSRDFLDAWADPLYRNYDWDQLEFDEQSALEHLLQWH 193 (239)
T ss_dssp -----------------------------------------------------------
T ss_pred cc---cccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 11 123469999999999999999999999876543211112367999999888754
No 9
>cd06431 GT8_LARGE_C LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis. The catalytic domain of LARGE is a putative glycosyltransferase. Mutations of LARGE in mouse and human cause dystroglycanopathies, a disease associated with hypoglycosylation of the membrane protein alpha-dystroglycan (alpha-DG) and consequent loss of extracellular ligand binding. LARGE needs to both physically interact with alpha-dystroglycan and function as a glycosyltransferase in order to stimulate alpha-dystroglycan hyperglycosylation. LARGE localizes to the Golgi apparatus and contains three conserved DxD motifs. While two of the motifs are indispensible for glycosylation function, one is important for localization of th eenzyme. LARGE was originally named because it covers approximately large trunck of genomic DNA, more than 600bp long. The predicted protein structure contains an N-terminal cytoplasmic domain, a transmembrane region, a coiled-coil
Probab=96.72 E-value=0.016 Score=55.15 Aligned_cols=185 Identities=14% Similarity=0.081 Sum_probs=86.6
Q ss_pred EEEEEeCcchHHHHHHHHHHhhhc-CCCccEEEEEeC--HHHHHHHhcc--CCCceEE-cCCCCCCccccc-cCchhHHH
Q 021054 95 IIVCAVSQPYLPFLNNWLISISRQ-KHQDQVLVIAED--YATLYKVNGR--WPGHAVL-VPPAPDSQTAHK-FGSQGFFN 167 (318)
Q Consensus 95 VIVt~~N~~y~~~l~Nwl~sl~~~-gi~~~vlVvAlD--~~a~~~c~~~--~pg~~v~-~~~~~d~~~~~~-~gs~~f~~ 167 (318)
+||++. .+|.+.+.+-+.|+-.- ...-++-|++.+ ++..+.+.+. ..+|.+. ..-. +...... ..+..|-.
T Consensus 4 ~iv~~~-~~y~~~~~~~i~Sil~n~~~~~~fhii~d~~s~~~~~~l~~~~~~~~~~i~f~~i~-~~~~~~~~~~~~~~s~ 81 (280)
T cd06431 4 AIVCAG-YNASRDVVTLVKSVLFYRRNPLHFHLITDEIARRILATLFQTWMVPAVEVSFYNAE-ELKSRVSWIPNKHYSG 81 (280)
T ss_pred EEEEcc-CCcHHHHHHHHHHHHHcCCCCEEEEEEECCcCHHHHHHHHHhccccCcEEEEEEhH-HhhhhhccCcccchhh
Confidence 566666 89988888888886442 211244444433 3444445433 1234332 2110 0000000 01111111
Q ss_pred H-HhhhHHHHHHHHHcCC-eEEEeecceeeecCCcCCcCC-----CCceeee-cccc---cccCCCCCCCCCCCCCCCCc
Q 021054 168 F-TSRRPCHLLHILELGY-NVMYNDVDMVWLKDPFPYLQG-----DHDVYFT-DDMA---AVKPLDHSHDLPPPGKKGRT 236 (318)
Q Consensus 168 m-~~~K~~~l~~lL~lGy-~VL~sDvDVVWLrdP~~~~~~-----~aDv~~s-~D~~---~~~~~d~~~~~p~~g~~g~~ 236 (318)
. +..|. ++-++|..-+ .||+.|+|+|...|..+.+.- +.-+... .|.. ...........+. .+.
T Consensus 82 ~y~y~RL-~ip~llp~~~dkvLYLD~Diiv~~di~eL~~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~----~~~ 156 (280)
T cd06431 82 IYGLMKL-VLTEALPSDLEKVIVLDTDITFATDIAELWKIFHKFTGQQVLGLVENQSDWYLGNLWKNHRPWPA----LGR 156 (280)
T ss_pred HHHHHHH-HHHHhchhhcCEEEEEcCCEEEcCCHHHHHHHhhhcCCCcEEEEeccchhhhhhhhhhccCCCcc----ccc
Confidence 1 11233 3455665445 699999999999998765532 1112222 2221 0000000011111 124
Q ss_pred ccceeEEEEecCh-HHHHHHHHHHHHHHcCCc-ccCCCCCChHHHHHHHhhc
Q 021054 237 YICSCMIYLRPTD-GAKLVMKKWIEELQAEPW-SKAKKANDQPAFNWALNKT 286 (318)
Q Consensus 237 ~~NtGf~y~R~T~-~t~~f~~~W~~~l~~~p~-~~~~~~~DQ~afN~ll~~~ 286 (318)
++|+|+|.+--.. +-..+.++|.....+... ..+.+..||+++|.++.+.
T Consensus 157 yFNsGVmlinL~~wR~~~~~~~~~~~~~~~~~~~~~~~~~DQDiLN~v~~~~ 208 (280)
T cd06431 157 GFNTGVILLDLDKLRKMKWESMWRLTAERELMSMLSTSLADQDIFNAVIKQN 208 (280)
T ss_pred ceeeeeeeeeHHHHHhhCHHHHHHHHHHHHHhhcCCCCcCcHHHHHHHHcCC
Confidence 8999999984322 111233334322211100 0123679999999999775
No 10
>COG1442 RfaJ Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases [Cell envelope biogenesis, outer membrane]
Probab=96.61 E-value=0.009 Score=58.07 Aligned_cols=190 Identities=16% Similarity=0.084 Sum_probs=100.2
Q ss_pred EEEEeCcchHHHHHHH----HHHhhhcCCCccEEEEEeCHHHHHHHhccC-C-Cce-EEcCCCCCCcccccc--CchhHH
Q 021054 96 IVCAVSQPYLPFLNNW----LISISRQKHQDQVLVIAEDYATLYKVNGRW-P-GHA-VLVPPAPDSQTAHKF--GSQGFF 166 (318)
Q Consensus 96 IVt~~N~~y~~~l~Nw----l~sl~~~gi~~~vlVvAlD~~a~~~c~~~~-p-g~~-v~~~~~~d~~~~~~~--gs~~f~ 166 (318)
|+-.+|.+|+.=+..- +++.++..+.=|+++...+++-.+.+++.- | ++. .+.. .|.+.-..+ .++.|.
T Consensus 5 Iv~a~D~nY~~~~gvsI~SiL~~n~~~~~~fhil~~~i~~e~~~~l~~~~~~f~~~i~~~~--id~~~~~~~~~~~~~~s 82 (325)
T COG1442 5 IAFAFDKNYLIPAGVSIYSLLEHNRKIFYKFHILVDGLNEEDKKKLNETAEPFKSFIVLEV--IDIEPFLDYPPFTKRFS 82 (325)
T ss_pred EEEEcccccchhHHHHHHHHHHhCccccEEEEEEecCCCHHHHHHHHHHHHhhccceeeEE--EechhhhcccccccchH
Confidence 6778899998744444 444453344447888888898888887652 1 111 1110 011111111 356677
Q ss_pred HHHhhhHHHHHHHHHcCCeEEEeecceeeecCCcCCcCC---CCceeeecccccccCCCCCCCCCCCCCCCCcccceeEE
Q 021054 167 NFTSRRPCHLLHILELGYNVMYNDVDMVWLKDPFPYLQG---DHDVYFTDDMAAVKPLDHSHDLPPPGKKGRTYICSCMI 243 (318)
Q Consensus 167 ~m~~~K~~~l~~lL~lGy~VL~sDvDVVWLrdP~~~~~~---~aDv~~s~D~~~~~~~d~~~~~p~~g~~g~~~~NtGf~ 243 (318)
.|+..|.- +-++....=.+++.|+|+|..+|=-+.|.- ++=+.+..|......... ......+...+.++|+|++
T Consensus 83 ~~v~~R~f-iadlf~~~dK~lylD~Dvi~~g~l~~lf~~~~~~~~~aaV~D~~~~~~~~~-~~~~~~~~~~~~yFNaG~l 160 (325)
T COG1442 83 KMVLVRYF-LADLFPQYDKMLYLDVDVIFCGDLSELFFIDLEEYYLAAVRDVFSHYMKEG-ALRLEKGDLEGSYFNAGVL 160 (325)
T ss_pred HHHHHHHH-HHHhccccCeEEEEecCEEEcCcHHHHHhcCCCcceEEEEeehhhhhhhhh-hhHhhhcccccccCcccee
Confidence 77777763 445666666799999999999976544432 222222333321000000 0000111223568999999
Q ss_pred EEecC-hHHHHHHHHHHHHHHcCCcccCCCCCChHHHHHHHhhcCCCcc
Q 021054 244 YLRPT-DGAKLVMKKWIEELQAEPWSKAKKANDQPAFNWALNKTAGQVC 291 (318)
Q Consensus 244 y~R~T-~~t~~f~~~W~~~l~~~p~~~~~~~~DQ~afN~ll~~~~~~~~ 291 (318)
++--- =+-..+.+.-++.+.+. .++-...||.++|.+++...-.++
T Consensus 161 linl~~W~~~~i~~k~i~~~~~~--~~~~~~~DQdiLN~i~~~~~~~L~ 207 (325)
T COG1442 161 LINLKLWREENIFEKLIELLKDK--ENDLLYPDQDILNMIFEDRVLELP 207 (325)
T ss_pred eehHHHHHHhhhHHHHHHHHhcc--ccccCCccccHHHHHHHhhhhccC
Confidence 97211 11112222222222221 123467899999999987654443
No 11
>PLN03182 xyloglucan 6-xylosyltransferase; Provisional
Probab=96.46 E-value=0.016 Score=57.68 Aligned_cols=115 Identities=12% Similarity=0.020 Sum_probs=73.6
Q ss_pred HhhhHHHHHHHHHcCC---eEEEeecceeeecCCcCCc-C--CCCceee-ecccccccCCCCCCCCCCCCCCCCccccee
Q 021054 169 TSRRPCHLLHILELGY---NVMYNDVDMVWLKDPFPYL-Q--GDHDVYF-TDDMAAVKPLDHSHDLPPPGKKGRTYICSC 241 (318)
Q Consensus 169 ~~~K~~~l~~lL~lGy---~VL~sDvDVVWLrdP~~~~-~--~~aDv~~-s~D~~~~~~~d~~~~~p~~g~~g~~~~NtG 241 (318)
.|.|+-++++++..-- -+++.|.|.+.+--++..- . .++++++ .-+... +....+ ..+|+|
T Consensus 181 ~WaKlpaLR~aM~~~PeaEWiWWLDsDALImNmsfelPlery~~~NlVihg~~~~l---------~~~kdW---~GLNtG 248 (429)
T PLN03182 181 FWAKLPLLRKLMLAHPEVEWIWWMDSDALFTDMTFEIPLEKYEGYNLVIHGWDELV---------YDQKSW---IGLNTG 248 (429)
T ss_pred chhHHHHHHHHHHHCCCceEEEEecCCceeecCCCCCCHhHcCCcCeeeccchhhh---------eecccc---Ccccee
Confidence 5899999999987642 3799999999975333321 1 1333322 111100 000011 358999
Q ss_pred EEEEecChHHHHHHHHHHHHHHcCCccc--------------CCCCCChHHHHHHHhhc--CCCcceeee
Q 021054 242 MIYLRPTDGAKLVMKKWIEELQAEPWSK--------------AKKANDQPAFNWALNKT--AGQVCSVCL 295 (318)
Q Consensus 242 f~y~R~T~~t~~f~~~W~~~l~~~p~~~--------------~~~~~DQ~afN~ll~~~--~~~~~v~~~ 295 (318)
.|++|.++-+..|++.|..+-.+.|.+. ....+||.|+-.++... .++-.+|.-
T Consensus 249 sFLIRNcqWSldlLDaWa~mgp~~~~~~~~g~~l~~~l~~rp~~eaDDQSAlvyLl~~~~~~w~~kv~le 318 (429)
T PLN03182 249 SFLIRNCQWSLDLLDAWAPMGPKGPIRDEAGKILTAELKGRPAFEADDQSALVYLLLTQRERWGDKVYLE 318 (429)
T ss_pred eEEEEcCHHHHHHHHHHHhcCCCCchhhhHHHHHHHhhcCCCCCCcccHHHHHHHHHhcchhhccceEEe
Confidence 9999999999999999987654332211 34689999999998654 455555543
No 12
>cd06430 GT8_like_2 GT8_like_2 represents a subfamily of GT8 with unknown function. A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed.
Probab=96.13 E-value=0.14 Score=49.46 Aligned_cols=105 Identities=13% Similarity=0.087 Sum_probs=57.1
Q ss_pred HHHHHHcCC-eEEEeecceeeecCCcCCcCC-----CCceeee-ccccc--ccCCCCCCCCCCCCCCCCcccceeEEEEe
Q 021054 176 LLHILELGY-NVMYNDVDMVWLKDPFPYLQG-----DHDVYFT-DDMAA--VKPLDHSHDLPPPGKKGRTYICSCMIYLR 246 (318)
Q Consensus 176 l~~lL~lGy-~VL~sDvDVVWLrdP~~~~~~-----~aDv~~s-~D~~~--~~~~d~~~~~p~~g~~g~~~~NtGf~y~R 246 (318)
+-++|. -+ .||+.|+|++.++|.-+.+.- +.-+... .|... .+.+......+.. |...+|+|+|++-
T Consensus 90 ip~lLp-~~dkvLYLD~Dii~~~dI~eL~~~~~df~~~~~aA~v~e~~~~~~~~~~~~~~~~~~---~~~gFNSGVmLmN 165 (304)
T cd06430 90 LPSLLP-DVDSLLYVDTDILFLRPVEEIWSFLKKFNSTQLAAMAPEHEEPNIGWYNRFARHPYY---GKTGVNSGVMLMN 165 (304)
T ss_pred HHHHhh-hhceEEEeccceeecCCHHHHHHHHhhcCCCeEEEEEecccccchhhhhhhcccCcc---cccccccceeeee
Confidence 344555 44 699999999999887554432 1112222 22210 0000000011111 2235999999985
Q ss_pred cChH------------HHHHHHHHHHHHHcCCcccCCCCCChHHHHHHHhhc
Q 021054 247 PTDG------------AKLVMKKWIEELQAEPWSKAKKANDQPAFNWALNKT 286 (318)
Q Consensus 247 ~T~~------------t~~f~~~W~~~l~~~p~~~~~~~~DQ~afN~ll~~~ 286 (318)
=+.= ...+-+.|.+.+.+.. ..-...||++||.++.+.
T Consensus 166 L~~wR~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~DQDiLN~v~~~~ 215 (304)
T cd06430 166 LTRMRRKYFKNDMTPVGLRWEEILMPLYKKYK--LKITWGDQDLINIIFHHN 215 (304)
T ss_pred HHHHHhhhcccccchhhhhHHHHHHHHHHhcc--cCCCCCCHHHHHHHHcCC
Confidence 4331 1334556666665542 123579999999999874
No 13
>PF03314 DUF273: Protein of unknown function, DUF273; InterPro: IPR004988 This is a family of proteins of unknown function.
Probab=95.63 E-value=0.064 Score=49.05 Aligned_cols=101 Identities=20% Similarity=0.223 Sum_probs=77.6
Q ss_pred HHHhhhHHHHHHHHHcCCeEEEeecceeeecCCc----CCcCCCCceeeecccccccCCCCCCCCCCCCCCCCcccceeE
Q 021054 167 NFTSRRPCHLLHILELGYNVMYNDVDMVWLKDPF----PYLQGDHDVYFTDDMAAVKPLDHSHDLPPPGKKGRTYICSCM 242 (318)
Q Consensus 167 ~m~~~K~~~l~~lL~lGy~VL~sDvDVVWLrdP~----~~~~~~aDv~~s~D~~~~~~~d~~~~~p~~g~~g~~~~NtGf 242 (318)
..+.+|--++.++|..==-||+.|+||.= -||- +++..++|+.+-+..++ ..+.+|-
T Consensus 26 d~fFrRHCvva~~L~~~~~vlflDaDigV-vNp~~~iEefid~~~Di~fydR~~n------------------~Ei~ags 86 (222)
T PF03314_consen 26 DKFFRRHCVVAKILPEYDWVLFLDADIGV-VNPNRRIEEFIDEGYDIIFYDRFFN------------------WEIAAGS 86 (222)
T ss_pred hHHHHHHHHHHHHhccCCEEEEEcCCcee-ecCcccHHHhcCCCCcEEEEecccc------------------hhhhhcc
Confidence 34667888889999865569999999986 6885 35566899998855432 2578899
Q ss_pred EEEecChHHHHHHHHHHHHHHcCCcccCCCCCChHHHHHHHhhcCC
Q 021054 243 IYLRPTDGAKLVMKKWIEELQAEPWSKAKKANDQPAFNWALNKTAG 288 (318)
Q Consensus 243 ~y~R~T~~t~~f~~~W~~~l~~~p~~~~~~~~DQ~afN~ll~~~~~ 288 (318)
|++|.|+.++.|++.|.+.-.+.|- .-...|-.|+...+.+..-
T Consensus 87 YlvkNT~~~~~fl~~~a~~E~~lP~--sfhGtDNGAlH~~L~e~l~ 130 (222)
T PF03314_consen 87 YLVKNTEYSRDFLKEWADYEFKLPN--SFHGTDNGALHIFLAEKLF 130 (222)
T ss_pred ceeeCCHHHHHHHHHHhhhCccCCC--ccccCccHHHHHHHHHHhC
Confidence 9999999999999999988666552 2357888899888876443
No 14
>PRK15171 lipopolysaccharide 1,3-galactosyltransferase; Provisional
Probab=95.24 E-value=0.092 Score=51.11 Aligned_cols=191 Identities=14% Similarity=0.054 Sum_probs=91.3
Q ss_pred eEEEEEeCcchHHHHHHHHHHhhhc--CCCccEEEEE--eCHHHHHHHhcc---CCC-ceEEc-CC-C-CCCccccccCc
Q 021054 94 TIIVCAVSQPYLPFLNNWLISISRQ--KHQDQVLVIA--EDYATLYKVNGR---WPG-HAVLV-PP-A-PDSQTAHKFGS 162 (318)
Q Consensus 94 tVIVt~~N~~y~~~l~Nwl~sl~~~--gi~~~vlVvA--lD~~a~~~c~~~---~pg-~~v~~-~~-~-~d~~~~~~~gs 162 (318)
.=|+..+|.+|+.-+..-+.|+-.. +..-++-|++ .+++..+.+++. ++. +.... +. . .+......|.
T Consensus 26 i~Iv~~~D~ny~~~~~vsi~Sil~nn~~~~~~f~Il~~~is~e~~~~l~~l~~~~~~~i~~~~id~~~~~~~~~~~~~s- 104 (334)
T PRK15171 26 LDIAYGIDKNFLFGCGVSIASVLLNNPDKSLVFHVFTDYISDADKQRFSALAKQYNTRINIYLINCERLKSLPSTKNWT- 104 (334)
T ss_pred eeEEEECcHhhHHHHHHHHHHHHHhCCCCCEEEEEEeCCCCHHHHHHHHHHHHhcCCeEEEEEeCHHHHhCCcccCcCC-
Confidence 4489999999999877777776432 2111344443 344444444332 221 22111 11 0 0111111222
Q ss_pred hhHHHHHhhhHHHHHHHHHcCC-eEEEeecceeeecCCcCCcCCCC--c-eeee-cccccccCCCCCCCCCCCCCCCCcc
Q 021054 163 QGFFNFTSRRPCHLLHILELGY-NVMYNDVDMVWLKDPFPYLQGDH--D-VYFT-DDMAAVKPLDHSHDLPPPGKKGRTY 237 (318)
Q Consensus 163 ~~f~~m~~~K~~~l~~lL~lGy-~VL~sDvDVVWLrdP~~~~~~~a--D-v~~s-~D~~~~~~~d~~~~~p~~g~~g~~~ 237 (318)
..+..|. ++-++|...+ .||+.|+|++-.+|--+.+.-+- + +... .|............+...+ .+..+
T Consensus 105 ----~atY~Rl-~ip~llp~~~dkvLYLD~Diiv~~dl~~L~~~dl~~~~~aav~~d~~~~~~~~~~~~l~~~~-~~~~Y 178 (334)
T PRK15171 105 ----YATYFRF-IIADYFIDKTDKVLYLDADIACKGSIKELIDLDFAENEIAAVVAEGDAEWWSKRAQSLQTPG-LASGY 178 (334)
T ss_pred ----HHHHHHH-HHHHhhhhhcCEEEEeeCCEEecCCHHHHHhccCCCCeEEEEEeccchhHHHHHHHhcCCcc-ccccc
Confidence 2233343 2335554456 59999999999988766554321 1 2222 2321000000000000001 11348
Q ss_pred cceeEEEEecCh-HHHHHHHHHHHHHHcCCcccCCCCCChHHHHHHHhhcCCCcc
Q 021054 238 ICSCMIYLRPTD-GAKLVMKKWIEELQAEPWSKAKKANDQPAFNWALNKTAGQVC 291 (318)
Q Consensus 238 ~NtGf~y~R~T~-~t~~f~~~W~~~l~~~p~~~~~~~~DQ~afN~ll~~~~~~~~ 291 (318)
+|+|++++--.. +-..+-+++.+.+........-...||++||.++++....++
T Consensus 179 FNsGVlliNl~~wRe~~i~~k~~~~l~~~~~~~~~~~~DQDiLN~~~~~~~~~L~ 233 (334)
T PRK15171 179 FNSGFLLINIPAWAQENISAKAIEMLADPEIVSRITHLDQDVLNILLAGKVKFID 233 (334)
T ss_pred eecceEEEcHHHHHHhhHHHHHHHHHhccccccceeecChhHHHHHHcCCeEECC
Confidence 999999984322 112233333443332100011246899999999987544443
No 15
>PLN03181 glycosyltransferase; Provisional
Probab=94.78 E-value=0.13 Score=51.53 Aligned_cols=107 Identities=17% Similarity=0.060 Sum_probs=67.5
Q ss_pred HHhhhHHHHHHHHHcC--C-eEEEeecceeeecCCcCCcC----CCCceeeecccccccCCCCCCCCCCCCCCCCcccce
Q 021054 168 FTSRRPCHLLHILELG--Y-NVMYNDVDMVWLKDPFPYLQ----GDHDVYFTDDMAAVKPLDHSHDLPPPGKKGRTYICS 240 (318)
Q Consensus 168 m~~~K~~~l~~lL~lG--y-~VL~sDvDVVWLrdP~~~~~----~~aDv~~s~D~~~~~~~d~~~~~p~~g~~g~~~~Nt 240 (318)
..|.|+-+++..+..= . -+++.|.|++.+ ||-..+. .+..+++- ++.. . .+....+ ..+|+
T Consensus 181 ~~WaKipalRaAM~a~PeAEWfWWLDsDALIM-Np~~sLPl~ry~~~NLvvh--g~p~----~--vy~~qdw---~GlN~ 248 (453)
T PLN03181 181 SYWAKLPVVRAAMLAHPEAEWIWWVDSDAVFT-DMDFKLPLHRYRDHNLVVH--GWPK----L--IYEKRSW---TALNA 248 (453)
T ss_pred hhhhHHHHHHHHHHHCCCceEEEEecCCceee-cCCCCCCHhhcCCcccccc--CCcc----c--ccccccc---cccce
Confidence 3688999999877652 2 489999999986 6632221 12222211 1100 0 0001111 35999
Q ss_pred eEEEEecChHHHHHHHHHHHHHHcCCccc--------------CCCCCChHHHHHHHhhc
Q 021054 241 CMIYLRPTDGAKLVMKKWIEELQAEPWSK--------------AKKANDQPAFNWALNKT 286 (318)
Q Consensus 241 Gf~y~R~T~~t~~f~~~W~~~l~~~p~~~--------------~~~~~DQ~afN~ll~~~ 286 (318)
|.|++|.++-+..|++.|..+-.+.|... ....+||-++--++-.+
T Consensus 249 GsFLIRNcqWSl~LLDaWa~Mgp~~p~~~~~G~~l~~~l~~r~~~eaDDQsaLvyll~~~ 308 (453)
T PLN03181 249 GVFLIRNCQWSLDFMDAWASMGPASPEYAKWGKILRSTFKDKLFPESDDQSALVYLLYKH 308 (453)
T ss_pred eeeEEecCHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhCCCCCCCccchHHHHHHHHhc
Confidence 99999999999999999997543333211 34689999998887543
No 16
>cd06432 GT8_HUGT1_C_like The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family. C-terminal domain of glycoprotein glucosyltransferase (UGT). UGT is a large glycoprotein whose C-terminus contains the catalytic activity. This catalytic C-terminal domain is highly homologous to Glycosyltransferase Family 8 (GT 8) and contains the DXD motif that coordinates donor sugar binding, characteristic for Family 8 glycosyltransferases. GT 8 proteins are retaining enzymes based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. The non-catalytic N-terminal portion of the human UTG1 (HUGT1) has been shown to monitor the protein folding status and activate its glucosyltransferase activity.
Probab=94.65 E-value=0.76 Score=42.84 Aligned_cols=107 Identities=17% Similarity=0.170 Sum_probs=52.3
Q ss_pred HHHHHcCC-eEEEeecceeeecCCcCCcCC---CCceeeecccccccCCCC-C---CCCCCCCCCCCcccceeEEEE---
Q 021054 177 LHILELGY-NVMYNDVDMVWLKDPFPYLQG---DHDVYFTDDMAAVKPLDH-S---HDLPPPGKKGRTYICSCMIYL--- 245 (318)
Q Consensus 177 ~~lL~lGy-~VL~sDvDVVWLrdP~~~~~~---~aDv~~s~D~~~~~~~d~-~---~~~p~~g~~g~~~~NtGf~y~--- 245 (318)
..+|...+ .|+|.|+|++...|=-+.+.- ++=+.+..|+........ . .+.-..+-.++.++|+|+|++
T Consensus 89 ~~lLP~~vdkvLYLD~Dilv~~dL~eL~~~dl~~~~~Aav~d~~~~~~~~~~~~~~~~~~~~~l~~~~YfNSGVmliNL~ 168 (248)
T cd06432 89 DVLFPLNVDKVIFVDADQIVRTDLKELMDMDLKGAPYGYTPFCDSRKEMDGFRFWKQGYWKSHLRGRPYHISALYVVDLK 168 (248)
T ss_pred HHhhhhccCEEEEEcCCceecccHHHHHhcCcCCCeEEEeeccccchhcccchhhhhhhhhhhcCCCCccceeeEEEeHH
Confidence 34787767 699999999997654333322 221222223211000000 0 000000102345899999998
Q ss_pred --ecChHHHHHHHHHHHHHHcCCcccCCCCCChHHHHHHHhhc
Q 021054 246 --RPTDGAKLVMKKWIEELQAEPWSKAKKANDQPAFNWALNKT 286 (318)
Q Consensus 246 --R~T~~t~~f~~~W~~~l~~~p~~~~~~~~DQ~afN~ll~~~ 286 (318)
|...-+.++.+. .+.+...+ ..-...||+++|.++.+.
T Consensus 169 ~wR~~~i~~~~~~~-~~~l~~~~--~~l~~~DQDiLN~v~~~~ 208 (248)
T cd06432 169 RFRRIAAGDRLRGQ-YQQLSQDP--NSLANLDQDLPNNMQHQV 208 (248)
T ss_pred HHHHHhHHHHHHHH-HHHHhcCC--CccccCCchhhHHHhccC
Confidence 333322222221 11222221 112568999999999663
No 17
>cd06429 GT8_like_1 GT8_like_1 represents a subfamily of GT8 with unknown function. A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed.
Probab=89.49 E-value=0.59 Score=43.95 Aligned_cols=83 Identities=18% Similarity=0.069 Sum_probs=48.7
Q ss_pred eEEEeecceeeecCCcCCcCCC---CceeeecccccccCCCCCCCCCCCCCCCCcccceeEEEEe-----cChHHHHHHH
Q 021054 185 NVMYNDVDMVWLKDPFPYLQGD---HDVYFTDDMAAVKPLDHSHDLPPPGKKGRTYICSCMIYLR-----PTDGAKLVMK 256 (318)
Q Consensus 185 ~VL~sDvDVVWLrdP~~~~~~~---aDv~~s~D~~~~~~~d~~~~~p~~g~~g~~~~NtGf~y~R-----~T~~t~~f~~ 256 (318)
.|+|.|+|++-.+|=-+.+..+ .-+.+..| ++|+|++++- ...-+.+++
T Consensus 116 kvlYLD~Dviv~~dl~eL~~~dl~~~~~aav~d----------------------yfNsGV~linl~~wr~~~i~~~~~- 172 (257)
T cd06429 116 KVIYLDDDVVVQKDLTELWNTDLGGGVAGAVET----------------------SWNPGVNVVNLTEWRRQNVTETYE- 172 (257)
T ss_pred eEEEEeCCEEEeCCHHHHhhCCCCCCEEEEEhh----------------------hcccceEEEeHHHHHhccHHHHHH-
Confidence 6999999999998865555432 11111111 5799999984 344444444
Q ss_pred HHHHHHHcCCcccCCCCCChHHHHHHHhhcCCCcc
Q 021054 257 KWIEELQAEPWSKAKKANDQPAFNWALNKTAGQVC 291 (318)
Q Consensus 257 ~W~~~l~~~p~~~~~~~~DQ~afN~ll~~~~~~~~ 291 (318)
.|.+.....- ..-....||+++|.++.+....++
T Consensus 173 ~~~~~~~~~~-~~~~~~~dqd~ln~~~~~~~~~L~ 206 (257)
T cd06429 173 KWMELNQEEE-VTLWKLITLPPGLIVFYGLTSPLD 206 (257)
T ss_pred HHHHHhhhcc-cchhhcCCccHHHHHccCeeEECC
Confidence 3444332210 000245789999999987654443
No 18
>PF11051 Mannosyl_trans3: Mannosyltransferase putative; InterPro: IPR022751 Alpha-mannosyltransferase is responsible for the addition of residues to the outer chain of core N-linked polysaccharides and to O-linked mannotriose. It is implicated in late Golgi modifications [][][]. The proteins matching this entry are conserved in fungi and also found in some phototrophic organisms.; GO: 0006486 protein glycosylation
Probab=84.11 E-value=4.3 Score=38.25 Aligned_cols=98 Identities=20% Similarity=0.219 Sum_probs=51.6
Q ss_pred EEEEeCcchHHHHHHHHHHhhhcCCCccEEE-EE----eCHHHHHHHhcc----CCCc-eEEcCCCCCCccccccCchhH
Q 021054 96 IVCAVSQPYLPFLNNWLISISRQKHQDQVLV-IA----EDYATLYKVNGR----WPGH-AVLVPPAPDSQTAHKFGSQGF 165 (318)
Q Consensus 96 IVt~~N~~y~~~l~Nwl~sl~~~gi~~~vlV-vA----lD~~a~~~c~~~----~pg~-~v~~~~~~d~~~~~~~gs~~f 165 (318)
||+++...+..++...+..+|+.|-.=-+=| .. ++++..+.+... .-++ ++..++..+. .+...+|
T Consensus 4 IVi~~g~~~~~~a~~lI~~LR~~g~~LPIEI~~~~~~dl~~~~~~~l~~~q~v~~vd~~~~~~~~~~~~----~~~~~~~ 79 (271)
T PF11051_consen 4 IVITAGDKYLWLALRLIRVLRRLGNTLPIEIIYPGDDDLSKEFCEKLLPDQDVWFVDASCVIDPDYLGK----SFSKKGF 79 (271)
T ss_pred EEEEecCccHHHHHHHHHHHHHhCCCCCEEEEeCCccccCHHHHHHHhhhhhhheecceEEeecccccc----ccccCCc
Confidence 4555555888888899999999875322322 23 344444444330 0011 1111111111 0110122
Q ss_pred HHHHhhhHHHHHHHHHcCC-eEEEeecceeeecCCcCCcC
Q 021054 166 FNFTSRRPCHLLHILELGY-NVMYNDVDMVWLKDPFPYLQ 204 (318)
Q Consensus 166 ~~m~~~K~~~l~~lL~lGy-~VL~sDvDVVWLrdP~~~~~ 204 (318)
. .|+ ..++-.=+ +||+.|+|++-++||-.+|.
T Consensus 80 ~----~K~---lA~l~ssFeevllLDaD~vpl~~p~~lF~ 112 (271)
T PF11051_consen 80 Q----NKW---LALLFSSFEEVLLLDADNVPLVDPEKLFE 112 (271)
T ss_pred h----hhh---hhhhhCCcceEEEEcCCcccccCHHHHhc
Confidence 1 243 22333334 69999999999999987776
No 19
>cd08579 GDPD_memb_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial glycerophosphodiester phosphodiesterases. In addition to a C-terminal GDPD domain, most members in this family have an N-terminus that functions as a membrane anchor.
Probab=74.34 E-value=53 Score=29.37 Aligned_cols=69 Identities=12% Similarity=0.067 Sum_probs=49.3
Q ss_pred CCcchHHHHHHhhccCC-eEEEEEeCcc--hHHHHHHHHHHhhhcCCCccEEEEEeCHHHHHHHhccCCCce
Q 021054 77 WRDYTLSQAASFVAKNG-TIIVCAVSQP--YLPFLNNWLISISRQKHQDQVLVIAEDYATLYKVNGRWPGHA 145 (318)
Q Consensus 77 ~~~~~L~ell~~~A~~~-tVIVt~~N~~--y~~~l~Nwl~sl~~~gi~~~vlVvAlD~~a~~~c~~~~pg~~ 145 (318)
.+.++|+|++......+ .+.+=.-... ...++...+.-+++.+..+++++...|.+..+.+++..|...
T Consensus 80 ~~iptL~evl~~~~~~~~~l~iEiK~~~~~~~~~~~~v~~~l~~~~~~~~v~v~Sf~~~~l~~~~~~~p~~~ 151 (220)
T cd08579 80 AKIPSLDEYLALAKGLKQKLLIELKPHGHDSPDLVEKFVKLYKQNLIENQHQVHSLDYRVIEKVKKLDPKIK 151 (220)
T ss_pred CcCCCHHHHHHHhhccCCeEEEEECCCCCCCHHHHHHHHHHHHHcCCCcCeEEEeCCHHHHHHHHHHCCCCe
Confidence 35679999998776533 3444333322 345667777777888887899999999999999988777653
No 20
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=70.25 E-value=45 Score=25.48 Aligned_cols=82 Identities=15% Similarity=0.165 Sum_probs=46.6
Q ss_pred HHHHHHHHHHhhhcCCCccEEEEEe--CHHHHHHHhccCCCceEEcCCCCCCccccccCchhHHHHHhhhHHHHHHHHHc
Q 021054 105 LPFLNNWLISISRQKHQDQVLVIAE--DYATLYKVNGRWPGHAVLVPPAPDSQTAHKFGSQGFFNFTSRRPCHLLHILEL 182 (318)
Q Consensus 105 ~~~l~Nwl~sl~~~gi~~~vlVvAl--D~~a~~~c~~~~pg~~v~~~~~~d~~~~~~~gs~~f~~m~~~K~~~l~~lL~l 182 (318)
.+++.-|+.+.+..|+ ++++|+-- ++.+.+.|++. +++.+..... +. . ....++.+.+. +... ..
T Consensus 4 ~~~L~~wl~~~~~lG~-d~i~i~d~~s~D~t~~~l~~~-~~v~i~~~~~-~~------~-~~~~~~~~~~~-~~~~--~~ 70 (97)
T PF13704_consen 4 ADYLPEWLAHHLALGV-DHIYIYDDGSTDGTREILRAL-PGVGIIRWVD-PY------R-DERRQRAWRNA-LIER--AF 70 (97)
T ss_pred HHHHHHHHHHHHHcCC-CEEEEEECCCCccHHHHHHhC-CCcEEEEeCC-Cc------c-chHHHHHHHHH-HHHh--CC
Confidence 4578999999999998 78877633 35677788764 5555543221 11 0 01111111111 1111 12
Q ss_pred CC-eEEEeecceeeecCC
Q 021054 183 GY-NVMYNDVDMVWLKDP 199 (318)
Q Consensus 183 Gy-~VL~sDvDVVWLrdP 199 (318)
+. -+++.|+|=.+.-++
T Consensus 71 ~~dWvl~~D~DEfl~~~~ 88 (97)
T PF13704_consen 71 DADWVLFLDADEFLVPPP 88 (97)
T ss_pred CCCEEEEEeeeEEEecCC
Confidence 44 489999998887665
No 21
>PLN02910 polygalacturonate 4-alpha-galacturonosyltransferase
Probab=65.20 E-value=15 Score=38.99 Aligned_cols=116 Identities=13% Similarity=0.039 Sum_probs=61.9
Q ss_pred cccCchhHHHHHh-hhHHHHHHHHHcCCeEEEeecceeeecCCcCCcCC---CCceeeecccccc-----cCCCCCCCCC
Q 021054 158 HKFGSQGFFNFTS-RRPCHLLHILELGYNVMYNDVDMVWLKDPFPYLQG---DHDVYFTDDMAAV-----KPLDHSHDLP 228 (318)
Q Consensus 158 ~~~gs~~f~~m~~-~K~~~l~~lL~lGy~VL~sDvDVVWLrdP~~~~~~---~aDv~~s~D~~~~-----~~~d~~~~~p 228 (318)
.++-.+.|..+.. .|. ++-+++..=-.|+|.|.|||-.+|--+.+.- +.-+.+..|+... ...+.++...
T Consensus 450 ~k~r~p~ylS~lnY~Rf-~LPelLp~l~KVLYLD~DVVV~gDLseLw~iDL~g~v~AAVedc~~~f~r~~~ylnfs~P~i 528 (657)
T PLN02910 450 LKYRNPKYLSMLNHLRF-YLPEVYPKLEKILFLDDDIVVQKDLTPLWSIDMQGMVNGAVETCKESFHRFDKYLNFSNPKI 528 (657)
T ss_pred cccCCcchhhHHHHHHH-HHHHHhhhcCeEEEEeCCEEecCchHHHHhCCcCCceEEEecccchhhhhhhhhhccCChhh
Confidence 3444455554433 344 3445565322699999999999987665432 2222223333210 0000000000
Q ss_pred -CCCCCCCcccceeEEEE-----ecChHHHHHHHHHHHHHHcCCcccCCCCCChHHHHH
Q 021054 229 -PPGKKGRTYICSCMIYL-----RPTDGAKLVMKKWIEELQAEPWSKAKKANDQPAFNW 281 (318)
Q Consensus 229 -~~g~~g~~~~NtGf~y~-----R~T~~t~~f~~~W~~~l~~~p~~~~~~~~DQ~afN~ 281 (318)
..-.....+.|+|++++ |-..-|. .++.|.+.-.+ ...+||.++|-
T Consensus 529 ~~yFNs~aCyfNsGVmVIDL~~WRe~nITe-~ye~w~eln~~------~~L~dqgsLPp 580 (657)
T PLN02910 529 SENFDPNACGWAFGMNMFDLKEWRKRNITG-IYHYWQDLNED------RTLWKLGSLPP 580 (657)
T ss_pred hhccCCCCceeecccEEEeHHHHHHhhHHH-HHHHHHHhccc------ccccccCCCCh
Confidence 00001234678899998 5555565 77888875332 47999999983
No 22
>cd08580 GDPD_Rv2277c_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial protein Rv2277c and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial protein Rv2277c and similar proteins. Members in this subfamily are bacterial homologous of mammalian GDE4, a transmembrane protein whose cellular function has not yet been elucidated.
Probab=64.82 E-value=1.2e+02 Score=28.44 Aligned_cols=64 Identities=14% Similarity=-0.011 Sum_probs=47.3
Q ss_pred CcchHHHHHHhhccCCeEEEEEeCcchHHHHHHHHHHhhhcCCCccEEEEEeCHHHHHHHhccCC
Q 021054 78 RDYTLSQAASFVAKNGTIIVCAVSQPYLPFLNNWLISISRQKHQDQVLVIAEDYATLYKVNGRWP 142 (318)
Q Consensus 78 ~~~~L~ell~~~A~~~tVIVt~~N~~y~~~l~Nwl~sl~~~gi~~~vlVvAlD~~a~~~c~~~~p 142 (318)
.-++|+|+++.... ..+.+=.-+.....+.+.-+.-+++.+..++++|...|.++++.+++..|
T Consensus 93 ~iPtL~evl~~~~~-~~l~iEiK~~~~~~~~~~v~~~i~~~~~~~~v~v~SF~~~~l~~~~~~~p 156 (263)
T cd08580 93 GIPTLEQVLRAFPD-TPFILDMKSLPADPQAKAVARVLERENAWSRVRIYSTNADYQDALAPYPQ 156 (263)
T ss_pred cCccHHHHHHhhcC-CeEEEEECCCCcHHHHHHHHHHHHhcCCCCCEEEEECCHHHHHHHHhcCc
Confidence 57899999987754 23333333333345667777778888888899999999999999988766
No 23
>PLN02829 Probable galacturonosyltransferase
Probab=64.44 E-value=15 Score=38.92 Aligned_cols=118 Identities=14% Similarity=0.092 Sum_probs=62.2
Q ss_pred ccccCchhHHHH-HhhhHHHHHHHHHcCC-eEEEeecceeeecCCcCCcCC---CCceeeecccccc-----cCCCCCCC
Q 021054 157 AHKFGSQGFFNF-TSRRPCHLLHILELGY-NVMYNDVDMVWLKDPFPYLQG---DHDVYFTDDMAAV-----KPLDHSHD 226 (318)
Q Consensus 157 ~~~~gs~~f~~m-~~~K~~~l~~lL~lGy-~VL~sDvDVVWLrdP~~~~~~---~aDv~~s~D~~~~-----~~~d~~~~ 226 (318)
..+|..+.|..+ +..|.. +-+++. .+ .|||.|.|||-.+|--+.+.- +.-+.+..|+... ...+..+.
T Consensus 431 ~~k~r~p~ylS~lnY~Rfy-LPeLLP-~LdKVLYLD~DVVVqgDLseLw~iDL~gkviAAVedc~~~f~r~~~~l~fs~p 508 (639)
T PLN02829 431 NLKYRNPKYLSILNHLRFY-LPEIFP-KLNKVLFLDDDIVVQKDLTGLWSIDLKGNVNGAVETCGESFHRFDRYLNFSNP 508 (639)
T ss_pred ccccCCcchhhHHHHHHHH-HHHHhc-ccCeEEEEeCCEEeCCChHHHHhCCCCCceEEEeccchhhhhhhhhhhhccch
Confidence 334444544433 234443 344555 34 699999999999987655432 2222223333210 00000000
Q ss_pred CCCCC-CCCCcccceeEEEE-----ecChHHHHHHHHHHHHHHcCCcccCCCCCChHHHHHHH
Q 021054 227 LPPPG-KKGRTYICSCMIYL-----RPTDGAKLVMKKWIEELQAEPWSKAKKANDQPAFNWAL 283 (318)
Q Consensus 227 ~p~~g-~~g~~~~NtGf~y~-----R~T~~t~~f~~~W~~~l~~~p~~~~~~~~DQ~afN~ll 283 (318)
...-+ .....++|+|++++ |-..-+..+. .|++.-.. ...|||.++|-.+
T Consensus 509 ~i~~~Fn~~~CyFNSGVmVINL~~WRe~nITe~y~-~wm~~n~~------r~L~dlgaLPp~L 564 (639)
T PLN02829 509 LISKNFDPHACGWAYGMNVFDLDEWKRQNITEVYH-SWQKLNHD------RQLWKLGTLPPGL 564 (639)
T ss_pred HhhhccCCcccceecceEEEeHHHHHHhChHHHHH-HHHHHccC------CccccccCCChHH
Confidence 00000 01124789999988 6566666555 78754322 3679999999876
No 24
>PLN02742 Probable galacturonosyltransferase
Probab=64.17 E-value=89 Score=32.65 Aligned_cols=104 Identities=17% Similarity=0.059 Sum_probs=56.8
Q ss_pred hhHHHHHHHHHcCCeEEEeecceeeecCCcCCcCC---CCceeeeccccc-----ccCCCCCCCCCC-CCCCCCccccee
Q 021054 171 RRPCHLLHILELGYNVMYNDVDMVWLKDPFPYLQG---DHDVYFTDDMAA-----VKPLDHSHDLPP-PGKKGRTYICSC 241 (318)
Q Consensus 171 ~K~~~l~~lL~lGy~VL~sDvDVVWLrdP~~~~~~---~aDv~~s~D~~~-----~~~~d~~~~~p~-~g~~g~~~~NtG 241 (318)
.|.. +-+++..=-.|+|.|+|||-.+|-.+.+.- +.=+....|+.. .+..+-++.... .......+.|+|
T Consensus 342 ~R~~-lP~llp~l~KvlYLD~DvVV~~DL~eL~~~DL~~~viaAVedC~~~f~ry~~yLnfS~p~i~~~f~~~aC~fNsG 420 (534)
T PLN02742 342 LRFY-IPEIYPALEKVVFLDDDVVVQKDLTPLFSIDLHGNVNGAVETCLETFHRYHKYLNFSHPLISSHFDPDACGWAFG 420 (534)
T ss_pred HHHH-HHHHhhccCeEEEEeCCEEecCChHHHhcCCCCCCEEEEeCchhhhhhhhhhhhcccchhhhccCCCCccccccC
Confidence 4443 334555322799999999999987665542 222223334410 000110110100 001123478999
Q ss_pred EEEE-----ecChHHHHHHHHHHHHHHcCCcccCCCCCChHHHHHH
Q 021054 242 MIYL-----RPTDGAKLVMKKWIEELQAEPWSKAKKANDQPAFNWA 282 (318)
Q Consensus 242 f~y~-----R~T~~t~~f~~~W~~~l~~~p~~~~~~~~DQ~afN~l 282 (318)
++.+ |-..-|. .++.|.+.-. ....+||.++|-.
T Consensus 421 V~ViDL~~WRe~nITe-~~~~w~e~n~------~~~l~d~gaLpp~ 459 (534)
T PLN02742 421 MNVFDLVAWRKANVTA-IYHYWQEQNV------DRTLWKLGTLPPG 459 (534)
T ss_pred cEEEeHHHHHhhcHHH-HHHHHHHhcc------ccccccccccchH
Confidence 9987 5555566 6778886432 2478999999865
No 25
>cd02515 Glyco_transf_6 Glycosyltransferase family 6 comprises enzymes responsible for the production of the human ABO blood group antigens. Glycosyltransferase family 6, GT_6, comprises enzymes with three known activities: alpha-1,3-galactosyltransferase, alpha-1,3 N-acetylgalactosaminyltransferase, and alpha-galactosyltransferase. UDP-galactose:beta-galactosyl alpha-1,3-galactosyltransferase (alpha3GT) catalyzes the transfer of galactose from UDP-alpha-d-galactose into an alpha-1,3 linkage with beta-galactosyl groups in glycoconjugates. The enzyme exists in most mammalian species but is absent from humans, apes, and old world monkeys as a result of the mutational inactivation of the gene. The alpha-1,3 N-acetylgalactosaminyltransferase and alpha-galactosyltransferase are responsible for the production of the human ABO blood group antigens. A N-acetylgalactosaminyltransferases use a UDP-GalNAc donor to convert the H-antigen acceptor to the A antigen, whereas a galactosyltransferase use
Probab=62.24 E-value=40 Score=32.13 Aligned_cols=104 Identities=21% Similarity=0.246 Sum_probs=63.8
Q ss_pred HHHHhhcc--CCeE-EEEEeCcchHHHHHHHHHHhhh---cCCCccEEEEEeCHHHHHHHhccCCCc--eEEcCCCCCCc
Q 021054 84 QAASFVAK--NGTI-IVCAVSQPYLPFLNNWLISISR---QKHQDQVLVIAEDYATLYKVNGRWPGH--AVLVPPAPDSQ 155 (318)
Q Consensus 84 ell~~~A~--~~tV-IVt~~N~~y~~~l~Nwl~sl~~---~gi~~~vlVvAlD~~a~~~c~~~~pg~--~v~~~~~~d~~ 155 (318)
++|++.-+ +-+| |+.++-..|..|++.|++|.++ .|...++.|.+-+....... ++.|+. .++.-.
T Consensus 23 ~~l~~~y~~~n~tIgl~vfatGkY~~f~~~F~~SAEk~Fm~g~~v~YyVFTD~~~~~p~v-~lg~~r~~~V~~v~----- 96 (271)
T cd02515 23 DVLDEYYRKQNITIGLTVFAVGKYTEFLERFLESAEKHFMVGYRVIYYIFTDKPAAVPEV-ELGPGRRLTVLKIA----- 96 (271)
T ss_pred HHHHHHHHhcCCEEEEEEEEeccHHHHHHHHHHHHHHhccCCCeeEEEEEeCCcccCccc-ccCCCceeEEEEec-----
Confidence 34444442 3333 5666777899999999999988 57667888877766553322 223332 233211
Q ss_pred cccccCchhHHHHHhhhHHHHHHHHH--c--CCe-EEEeecceeeecC
Q 021054 156 TAHKFGSQGFFNFTSRRPCHLLHILE--L--GYN-VMYNDVDMVWLKD 198 (318)
Q Consensus 156 ~~~~~gs~~f~~m~~~K~~~l~~lL~--l--Gy~-VL~sDvDVVWLrd 198 (318)
.. ..|...+.+|.+.+.+..+ . .+| +.+.|+|+++.++
T Consensus 97 ~~-----~~W~~~sl~Rm~~~~~~~~~~~~~e~DYlF~~dvd~~F~~~ 139 (271)
T cd02515 97 EE-----SRWQDISMRRMKTLADHIADRIGHEVDYLFCMDVDMVFQGP 139 (271)
T ss_pred cc-----cCCcHHHHHHHHHHHHHHHHhhcccCCEEEEeeCCceEeec
Confidence 11 2344556678888876655 3 455 4667999999654
No 26
>cd08563 GDPD_TtGDE_like Glycerophosphodiester phosphodiesterase domain of Thermoanaerobacter tengcongensis and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermoanaerobacter tengcongensis glycerophosphodiester phosphodiesterase (TtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Despite the fact that most of GDPD family members exist as the monomer, TtGDE can function as a dimeric unit. Its catalytic mechanism is based on the general base-acid catalysis, which is similar to that of phosphoinositide-specific phospholipases C (PI-PLCs, EC 3.1.4.11). A divalent metal cation is required for the enzyme activity of TtGDE.
Probab=60.65 E-value=1.1e+02 Score=27.46 Aligned_cols=68 Identities=12% Similarity=0.101 Sum_probs=48.1
Q ss_pred CcchHHHHHHhhccCCe-EEEEEeCcc--hHHHHHHHHHHhhhcCCCccEEEEEeCHHHHHHHhccCCCce
Q 021054 78 RDYTLSQAASFVAKNGT-IIVCAVSQP--YLPFLNNWLISISRQKHQDQVLVIAEDYATLYKVNGRWPGHA 145 (318)
Q Consensus 78 ~~~~L~ell~~~A~~~t-VIVt~~N~~--y~~~l~Nwl~sl~~~gi~~~vlVvAlD~~a~~~c~~~~pg~~ 145 (318)
+..+|+|+++.....+. +++=.-+.. +..+.+..+.-+++.+..+++++...|.++.+.+++..|.+.
T Consensus 87 ~iptL~evl~~~~~~~~~l~leiK~~~~~~~~~~~~l~~~l~~~~~~~~v~~~Sf~~~~l~~~~~~~p~~~ 157 (230)
T cd08563 87 KIPTLEEVLDLLKDKDLLLNIEIKTDVIHYPGIEKKVLELVKEYNLEDRVIFSSFNHESLKRLKKLDPKIK 157 (230)
T ss_pred cCCCHHHHHHHHHhcCcEEEEEECCCCCcChhHHHHHHHHHHHcCCCCCEEEEcCCHHHHHHHHHHCCCCc
Confidence 46799999987764443 333333322 245666666677777777899999999999999988777643
No 27
>cd08575 GDPD_GDE4_like Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function is not elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests mammalian GDE4 may play some distinct role from other members of mammalian GDEs family. Also included in this subfamily are uncharacterized mammalian glycerophosphodiester phosphodiesterase domain-containing protein 3 (GDPD3) and similar proteins which display very high sequence homology to mammalian GDE4.
Probab=56.66 E-value=1.7e+02 Score=27.18 Aligned_cols=65 Identities=15% Similarity=0.066 Sum_probs=47.4
Q ss_pred CcchHHHHHHhhccCCeEEEEEeCcchHHHHHHHHHHhhhcCCCccEEEEEeCHHHHHHHhccCCC
Q 021054 78 RDYTLSQAASFVAKNGTIIVCAVSQPYLPFLNNWLISISRQKHQDQVLVIAEDYATLYKVNGRWPG 143 (318)
Q Consensus 78 ~~~~L~ell~~~A~~~tVIVt~~N~~y~~~l~Nwl~sl~~~gi~~~vlVvAlD~~a~~~c~~~~pg 143 (318)
+-++|+|+++.... -.+.+=.=+.....+.+..+.-+++.+..+++++...|.++++.+++..|.
T Consensus 96 ~iptL~evl~~~~~-~~l~iEiK~~~~~~~~~~v~~~i~~~~~~~~~~~~Sf~~~~l~~~~~~~p~ 160 (264)
T cd08575 96 RIPTLEEVFKAFPD-TPINIDIKSPDAEELIAAVLDLLEKYKREDRTVWGSTNPEYLRALHPENPN 160 (264)
T ss_pred cCCcHHHHHHhCCC-CeEEEEECCCCHHHHHHHHHHHHHhccccceEEEEeCCHHHHHHHHHhCcc
Confidence 46799999987643 334444443333456677777788888878999999999999999887665
No 28
>KOG4748 consensus Subunit of Golgi mannosyltransferase complex [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis]
Probab=54.41 E-value=24 Score=35.00 Aligned_cols=114 Identities=14% Similarity=0.102 Sum_probs=69.3
Q ss_pred HHhhhHHHHHHHHHcCCe---EEEeecceeeecCCcCC----cCCC--Cceeeec-cccc------------ccCCCCCC
Q 021054 168 FTSRRPCHLLHILELGYN---VMYNDVDMVWLKDPFPY----LQGD--HDVYFTD-DMAA------------VKPLDHSH 225 (318)
Q Consensus 168 m~~~K~~~l~~lL~lGy~---VL~sDvDVVWLrdP~~~----~~~~--aDv~~s~-D~~~------------~~~~d~~~ 225 (318)
..|.|+-+|++.+..=-+ +++.|.|.+.+ ||--- +... -+..... |... .-..|...
T Consensus 158 ~~W~KiP~Ir~tM~kyP~AeWIWWlD~DAlim-n~~lsL~~~ilk~~~L~~~l~~nd~~~~~~~n~~~~~~~~~~~d~~~ 236 (364)
T KOG4748|consen 158 GVWAKLPAIRQTMLKYPDAEWIWWLDQDALIM-NPDLSLQDHILKPENLVTHLLRNDQKSINPLNIFRLRPRTPSLDDLE 236 (364)
T ss_pred chhHHhHHHHHHHHHCCCCcEEEEecccchhh-CcccchhHHhcCHHHHHHhhccccccccccCCccccccccccccchh
Confidence 478999999988876444 79999999885 44211 1110 0111111 1000 00112222
Q ss_pred CCCCCCCCCCcccceeEEEEecChHHHHHHHHHHHHHHcCCcccCCCCCChHHHHHHHhh
Q 021054 226 DLPPPGKKGRTYICSCMIYLRPTDGAKLVMKKWIEELQAEPWSKAKKANDQPAFNWALNK 285 (318)
Q Consensus 226 ~~p~~g~~g~~~~NtGf~y~R~T~~t~~f~~~W~~~l~~~p~~~~~~~~DQ~afN~ll~~ 285 (318)
+....+.++.+.+|+|=+++|.++-++.+++.|.+-+-.+ ......+|.++-..+..
T Consensus 237 ~~~~ii~qD~nG~naGSfLirns~~~~~llD~w~dp~l~~---~~~~~~Eq~al~~~~e~ 293 (364)
T KOG4748|consen 237 DIAFIIPQDCNGINAGSFLIRNSEWGRLLLDAWNDPLLYE---LLWGQKEQDALGHFLEN 293 (364)
T ss_pred hhceecccCCCCccccceEEecCccchhHHHhccCHHHHh---hccchHHHHHHHHHHhh
Confidence 3334444555569999999999999999999998765443 12356888888777654
No 29
>PLN02523 galacturonosyltransferase
Probab=52.96 E-value=2.2e+02 Score=30.00 Aligned_cols=95 Identities=14% Similarity=0.074 Sum_probs=50.4
Q ss_pred HHHHHHcCC-eEEEeecceeeecCCcCCcCC---CCceeeeccccc-----ccCCCCCCCCCCCC---CCCCcccceeEE
Q 021054 176 LLHILELGY-NVMYNDVDMVWLKDPFPYLQG---DHDVYFTDDMAA-----VKPLDHSHDLPPPG---KKGRTYICSCMI 243 (318)
Q Consensus 176 l~~lL~lGy-~VL~sDvDVVWLrdP~~~~~~---~aDv~~s~D~~~-----~~~~d~~~~~p~~g---~~g~~~~NtGf~ 243 (318)
+-+++.. + .|+|.|.|||-.+|--+.+.- +.=+.+..|+.. ....+..+ |... .....+.|+|++
T Consensus 370 IPeLLP~-ldKVLYLD~DVVVq~DLseLw~iDL~gkv~aAVeDc~~~~~r~~~~ln~s~--p~i~~yFNs~aC~wnsGVm 446 (559)
T PLN02523 370 LPEMYPK-LHRILFLDDDVVVQKDLTGLWKIDMDGKVNGAVETCFGSFHRYAQYLNFSH--PLIKEKFNPKACAWAYGMN 446 (559)
T ss_pred HHHHhcc-cCeEEEEeCCEEecCCHHHHHhCcCCCceEEEehhhhhHHHHHHHhhcccc--hhhhhCcCCCcccccCCcE
Confidence 3445553 4 699999999999987665542 221222234321 00001000 1000 001123445999
Q ss_pred EE-----ecChHHHHHHHHHHHHHHcCCcccCCCCCChHHHH
Q 021054 244 YL-----RPTDGAKLVMKKWIEELQAEPWSKAKKANDQPAFN 280 (318)
Q Consensus 244 y~-----R~T~~t~~f~~~W~~~l~~~p~~~~~~~~DQ~afN 280 (318)
++ |-..-|.++ ..|.+. .. ....+||.++|
T Consensus 447 lINL~~WRe~nITek~-~~w~~l-n~-----~~~l~DqdaLp 481 (559)
T PLN02523 447 IFDLDAWRREKCTEQY-HYWQNL-NE-----NRTLWKLGTLP 481 (559)
T ss_pred EEeHHHHHHhchHHHH-HHHHHh-cc-----ccccccccccc
Confidence 87 556666665 567653 22 13789999996
No 30
>PLN02867 Probable galacturonosyltransferase
Probab=52.18 E-value=39 Score=35.28 Aligned_cols=114 Identities=17% Similarity=0.094 Sum_probs=55.2
Q ss_pred CchhHHHHH-hhhHHHHHHHHHcCC-eEEEeecceeeecCCcCCcCC---CCceeeeccccc------cc----CCCCCC
Q 021054 161 GSQGFFNFT-SRRPCHLLHILELGY-NVMYNDVDMVWLKDPFPYLQG---DHDVYFTDDMAA------VK----PLDHSH 225 (318)
Q Consensus 161 gs~~f~~m~-~~K~~~l~~lL~lGy-~VL~sDvDVVWLrdP~~~~~~---~aDv~~s~D~~~------~~----~~d~~~ 225 (318)
.++.|..+. ..|. ++-+++. -+ .|||.|.|||-.+|--+.+.- +.-+..-.|.+. +. .++.++
T Consensus 323 ~~pkylS~lnYlRf-lIPeLLP-~LdKVLYLD~DVVVqgDLseLwdiDL~gkviaAV~D~~c~~~~~~~~~~~~YlNfsn 400 (535)
T PLN02867 323 LSPSCLSLLNHLRI-YIPELFP-DLNKIVFLDDDVVVQHDLSSLWELDLNGKVVGAVVDSWCGDNCCPGRKYKDYLNFSH 400 (535)
T ss_pred cChhhhhHHHHHHH-HHHHHhh-ccCeEEEecCCEEEcCchHHHHhCcCCCCeEEEEeccccccccccchhhhhhccccc
Confidence 334444432 2343 2334555 34 699999999999987665543 211222212110 00 011000
Q ss_pred CCCCCC-CCCCcccceeEEEE-----ecChHHHHHHHHHHHHHHcCCcccCCCCCChHHHHH
Q 021054 226 DLPPPG-KKGRTYICSCMIYL-----RPTDGAKLVMKKWIEELQAEPWSKAKKANDQPAFNW 281 (318)
Q Consensus 226 ~~p~~g-~~g~~~~NtGf~y~-----R~T~~t~~f~~~W~~~l~~~p~~~~~~~~DQ~afN~ 281 (318)
.....+ .....+.|+|++.+ |-..-+.+ +.+|++.-.+. ....+||.++|.
T Consensus 401 p~i~~~~~p~~cYFNSGVmLINL~~WRe~nITek-~~~~Le~n~~~----~~~l~dqd~LN~ 457 (535)
T PLN02867 401 PLISSNLDQERCAWLYGMNVFDLKAWRRTNITEA-YHKWLKLSLNS----GLQLWQPGALPP 457 (535)
T ss_pred hhhhccCCCCCcceecceeeeeHHHHHHhcHHHH-HHHHHHhchhc----ccccccccccch
Confidence 000000 01234789999998 44444433 33454433221 136799999997
No 31
>cd08567 GDPD_SpGDE_like Glycerophosphodiester phosphodiesterase domain of putative Silicibacter pomeroyi glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and similar proteins. The prototype of this CD is a putative GP-GDE from Silicibacter pomeroyi (SpGDE). It shows high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=46.81 E-value=2.3e+02 Score=25.77 Aligned_cols=109 Identities=24% Similarity=0.214 Sum_probs=62.6
Q ss_pred CCcchHHHHHHhhccC---CeEEEE-EeCcc--------hHHHHHHHHHHhhhcCCCccEEEEEeCHHHHHHHhccCCCc
Q 021054 77 WRDYTLSQAASFVAKN---GTIIVC-AVSQP--------YLPFLNNWLISISRQKHQDQVLVIAEDYATLYKVNGRWPGH 144 (318)
Q Consensus 77 ~~~~~L~ell~~~A~~---~tVIVt-~~N~~--------y~~~l~Nwl~sl~~~gi~~~vlVvAlD~~a~~~c~~~~pg~ 144 (318)
..-++|+|+++.+... +..+.. .-... ...+...-+.-+++.+..+++++...|.+.++.+++..|.+
T Consensus 107 ~~iptL~evl~~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~v~~~Sf~~~~l~~~~~~~p~~ 186 (263)
T cd08567 107 TRIPTLEEVFALVEKYGNQKVRFNIETKSDPDRDILHPPPEEFVDAVLAVIRKAGLEDRVVLQSFDWRTLQEVRRLAPDI 186 (263)
T ss_pred ccCCCHHHHHHHHHHhccCCceEEEEEcCCCCccccCccHHHHHHHHHHHHHHcCCCCceEEEeCCHHHHHHHHHHCCCc
Confidence 4577999999987643 333332 11111 13355555555677777789999999999999998876654
Q ss_pred eEEc--CCCC--CCcc-ccccC----chhHHHHHhhhHHHHHHHHHcCCeEEE
Q 021054 145 AVLV--PPAP--DSQT-AHKFG----SQGFFNFTSRRPCHLLHILELGYNVMY 188 (318)
Q Consensus 145 ~v~~--~~~~--d~~~-~~~~g----s~~f~~m~~~K~~~l~~lL~lGy~VL~ 188 (318)
.+.. .... .... ....+ ...+ ......++..+-+.|..|..
T Consensus 187 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~~~~~G~~v~v 236 (263)
T cd08567 187 PTVALTEETTLGNLPRAAKKLGADIWSPYF---TLVTKELVDEAHALGLKVVP 236 (263)
T ss_pred cEEEEecCCcccCHHHHHHHhCCcEEecch---hhcCHHHHHHHHHCCCEEEE
Confidence 3321 1111 1100 00001 1111 12456788888899988754
No 32
>PLN02870 Probable galacturonosyltransferase
Probab=45.59 E-value=42 Score=34.97 Aligned_cols=123 Identities=15% Similarity=0.121 Sum_probs=59.2
Q ss_pred CchhHHHHH-hhhHHHHHHHHHcCC-eEEEeecceeeecCCcCCcCC---CCceeeecccccc----------cCCCCCC
Q 021054 161 GSQGFFNFT-SRRPCHLLHILELGY-NVMYNDVDMVWLKDPFPYLQG---DHDVYFTDDMAAV----------KPLDHSH 225 (318)
Q Consensus 161 gs~~f~~m~-~~K~~~l~~lL~lGy-~VL~sDvDVVWLrdP~~~~~~---~aDv~~s~D~~~~----------~~~d~~~ 225 (318)
.++.|..+. ..|.. +-+++. -+ .|||.|.|||-.+|--+.+.- +.=+.+..|+... +.++-++
T Consensus 321 ~~p~ylS~lny~Rl~-LPelLP-~LdKVLYLD~DVVVqgDLseLw~iDL~gkviaAVeDc~~~~~~~~~~~~~~YfNfs~ 398 (533)
T PLN02870 321 RSPKYISLLNHLRIY-LPELFP-NLDKVVFLDDDVVIQRDLSPLWDIDLGGKVNGAVETCRGEDEWVMSKRFRNYFNFSH 398 (533)
T ss_pred CCccccCHHHHHHHH-HHHHhh-hcCeEEEEeCCEEecCcHHHHhhCCCCCceEEEEccccccchhhhhhhhhhhccccc
Confidence 344444432 23443 334454 23 699999999999987665542 2211122232110 0011000
Q ss_pred CCCCCC-CCCCcccceeEEEE-----ecChHHHHHHHHHHHHHHcCCcccCCCCCChHHHH---HHHhhcCCCc
Q 021054 226 DLPPPG-KKGRTYICSCMIYL-----RPTDGAKLVMKKWIEELQAEPWSKAKKANDQPAFN---WALNKTAGQV 290 (318)
Q Consensus 226 ~~p~~g-~~g~~~~NtGf~y~-----R~T~~t~~f~~~W~~~l~~~p~~~~~~~~DQ~afN---~ll~~~~~~~ 290 (318)
..-..+ .....+.|+|++++ |-..-+.++++ |.+.-... +...+||.++| .++.+....+
T Consensus 399 p~i~~~fd~~~cyfNSGVlLINL~~WRe~nITek~~~-~l~~n~~~----~l~l~DQdaLp~~livf~g~v~~L 467 (533)
T PLN02870 399 PLIAKNLDPEECAWAYGMNIFDLRAWRKTNIRETYHS-WLKENLKS----NLTMWKLGTLPPALIAFKGHVHPI 467 (533)
T ss_pred chhhcccCcccceeeccchhccHHHHHHcChHHHHHH-HHHhhhhc----CceecccccccHhHHHhcCceEEC
Confidence 000000 01134788999987 55555554443 43322111 13689999994 5555443333
No 33
>cd08612 GDPD_GDE4 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function has not yet been elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests GDE4 may play some distinct role from other members of the GDE family.
Probab=43.77 E-value=2.9e+02 Score=26.15 Aligned_cols=66 Identities=11% Similarity=-0.007 Sum_probs=43.3
Q ss_pred CcchHHHHHHhhccCCeEEEEEeCcchHHHHHHHHHHhhhcCCCccEEEEEeCHHHHHHHhccCCCce
Q 021054 78 RDYTLSQAASFVAKNGTIIVCAVSQPYLPFLNNWLISISRQKHQDQVLVIAEDYATLYKVNGRWPGHA 145 (318)
Q Consensus 78 ~~~~L~ell~~~A~~~tVIVt~~N~~y~~~l~Nwl~sl~~~gi~~~vlVvAlD~~a~~~c~~~~pg~~ 145 (318)
+-++|+|+++... +-.+.+=.=... ..+.+.-+.-+++.+..+++++..-|.++++.+++..|...
T Consensus 121 ~IPtL~EvL~~~~-~~~lnIEiK~~~-~~~~~~v~~~i~~~~~~~~v~isSF~~~~L~~~~~~~p~i~ 186 (300)
T cd08612 121 RIPLLEEVFEAFP-DTPINIDIKVEN-DELIKKVSDLVRKYKREDITVWGSFNDEIVKKCHKENPNIP 186 (300)
T ss_pred CCCCHHHHHHhCC-CCeEEEEECCCc-hHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHHHHHhCCCcc
Confidence 5679999998763 322222111111 13444445556777777899999999999999998777654
No 34
>PLN02659 Probable galacturonosyltransferase
Probab=43.48 E-value=39 Score=35.18 Aligned_cols=124 Identities=16% Similarity=0.084 Sum_probs=59.8
Q ss_pred cCchhHHHHH-hhhHHHHHHHHHcCC-eEEEeecceeeecCCcCCcCC---CCceeeecccccc----------cCCCCC
Q 021054 160 FGSQGFFNFT-SRRPCHLLHILELGY-NVMYNDVDMVWLKDPFPYLQG---DHDVYFTDDMAAV----------KPLDHS 224 (318)
Q Consensus 160 ~gs~~f~~m~-~~K~~~l~~lL~lGy-~VL~sDvDVVWLrdP~~~~~~---~aDv~~s~D~~~~----------~~~d~~ 224 (318)
+..+.|..|. ..|.. +-+++. .+ .|||.|.|||-.+|=-+.+.- +.=+.+..|+... ...+..
T Consensus 321 ~~~p~ylS~~nY~RL~-IPeLLP-~LdKVLYLD~DVVVqgDLseLw~iDL~gkv~AAVeDc~~~d~~~~~~~~~~yL~~s 398 (534)
T PLN02659 321 ALSPKYNSVMNHIRIH-LPELFP-SLNKVVFLDDDIVVQTDLSPLWDIDMNGKVNGAVETCRGEDKFVMSKKLKSYLNFS 398 (534)
T ss_pred cCCccceeHHHHHHHH-HHHHhh-hcCeEEEeeCCEEEcCchHHHHhCCCCCcEEEEeeccccccchhhhHHHHHhhccc
Confidence 4455665543 34543 334555 24 699999999998875544432 2111122232100 000000
Q ss_pred CCC-CCCCCCCCcccceeEEEE-----ecChHHHHHHHHHHHHHHcCCcccCCCCCChHHHH---HHHhhcCCCc
Q 021054 225 HDL-PPPGKKGRTYICSCMIYL-----RPTDGAKLVMKKWIEELQAEPWSKAKKANDQPAFN---WALNKTAGQV 290 (318)
Q Consensus 225 ~~~-p~~g~~g~~~~NtGf~y~-----R~T~~t~~f~~~W~~~l~~~p~~~~~~~~DQ~afN---~ll~~~~~~~ 290 (318)
+.. ...-.....+.|+|++++ |-..-+.++++ |++.-..+ +-..+||.++| .++.+....+
T Consensus 399 ~p~i~~yFn~~~cYfNsGVlLINLk~WRe~nITek~l~-~l~~n~~~----~l~l~DQdaLp~~LivF~g~v~~L 468 (534)
T PLN02659 399 HPLIAKNFDPNECAWAYGMNIFDLEAWRKTNISSTYHH-WLEENLKS----DLSLWQLGTLPPGLIAFHGHVHVI 468 (534)
T ss_pred chhhhhccCccccceecceeEeeHHHHHhcChHHHHHH-HHHhcccc----cccccccccchHHHHHhcCCEEEC
Confidence 000 000001134789999998 55555554443 33322111 23679999995 5555444333
No 35
>PLN02718 Probable galacturonosyltransferase
Probab=43.08 E-value=28 Score=36.72 Aligned_cols=108 Identities=11% Similarity=-0.010 Sum_probs=54.6
Q ss_pred hhhHHHHHHHHHcCCeEEEeecceeeecCCcCCcCC---CCceeeecccccc----cCCCCCCCCC-CC----CCCCCcc
Q 021054 170 SRRPCHLLHILELGYNVMYNDVDMVWLKDPFPYLQG---DHDVYFTDDMAAV----KPLDHSHDLP-PP----GKKGRTY 237 (318)
Q Consensus 170 ~~K~~~l~~lL~lGy~VL~sDvDVVWLrdP~~~~~~---~aDv~~s~D~~~~----~~~d~~~~~p-~~----g~~g~~~ 237 (318)
..|..+- +++..=-.|+|.|+|||-.+|--+.+.- +.-+.+..|+... ...+..-.+. ++ -.....+
T Consensus 406 y~Rl~ip-ellp~l~KvLYLD~DvVV~~DL~eL~~iDl~~~v~aaVedC~~~~~~~~~~~~~lnfs~p~i~~~fn~~~Cy 484 (603)
T PLN02718 406 HARFYLP-DIFPGLNKIVLFDHDVVVQRDLSRLWSLDMKGKVVGAVETCLEGEPSFRSMDTFINFSDPWVAKKFDPKACT 484 (603)
T ss_pred HHHHHHH-HHhcccCEEEEEECCEEecCCHHHHhcCCCCCcEEEEeccccccccchhhhhhhhhccchhhhcccCCCccc
Confidence 3444332 3444312699999999999997665532 2222223343211 0000000000 00 0112347
Q ss_pred cceeEEEE-----ecChHHHHHHHHHHHHHHcCCcccCCCCCChHHHH---HHHhh
Q 021054 238 ICSCMIYL-----RPTDGAKLVMKKWIEELQAEPWSKAKKANDQPAFN---WALNK 285 (318)
Q Consensus 238 ~NtGf~y~-----R~T~~t~~f~~~W~~~l~~~p~~~~~~~~DQ~afN---~ll~~ 285 (318)
.|+|++.+ |-..-+.. +..|++.-.+ ...+||.++| .++.+
T Consensus 485 fNsGVlLIDLk~WReenITe~-~~~~l~~n~~------~~l~dqdaLpp~LlvF~g 533 (603)
T PLN02718 485 WAFGMNLFDLEEWRRQKLTSV-YHKYLQLGVK------RPLWKAGSLPIGWLTFYN 533 (603)
T ss_pred cccceEEEeHHHHHhcChHHH-HHHHHHhccC------ccccCcccccHHHHHhcC
Confidence 88999987 44444444 4456544222 2678998887 56554
No 36
>PF03414 Glyco_transf_6: Glycosyltransferase family 6; InterPro: IPR005076 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 6 GT6 from CAZY comprises enzymes with three known activities; alpha-1,3-galactosyltransferase (2.4.1.151 from EC); alpha-1,3 N-acetylgalactosaminyltransferase (2.4.1.40 from EC); alpha-galactosyltransferase (2.4.1.37 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0016020 membrane; PDB: 2Y7A_B 2O1G_A 1R82_A 2RJ1_A 3IOJ_B 2RJ4_A 3I0C_A 3SX8_A 1ZJ1_A 3I0E_A ....
Probab=42.39 E-value=1.1e+02 Score=30.20 Aligned_cols=97 Identities=22% Similarity=0.324 Sum_probs=56.3
Q ss_pred CCeE-EEEEeCcchHHHHHHHHHHhhh---cCCCccEEEEEeCHHHHHHHhccCCCc--eEEcCCCCCCccccccCchhH
Q 021054 92 NGTI-IVCAVSQPYLPFLNNWLISISR---QKHQDQVLVIAEDYATLYKVNGRWPGH--AVLVPPAPDSQTAHKFGSQGF 165 (318)
Q Consensus 92 ~~tV-IVt~~N~~y~~~l~Nwl~sl~~---~gi~~~vlVvAlD~~a~~~c~~~~pg~--~v~~~~~~d~~~~~~~gs~~f 165 (318)
+=|| +++++-..|..|++.|++|.++ .|..-++.|.+-+.+..-.+. +.|+. .++... +. ..|
T Consensus 98 n~tIGL~vfA~GkY~~fl~~Fl~SAek~Fm~g~~V~YYVFTD~p~~vP~i~-l~~~r~~~V~~v~-----~~-----~~W 166 (337)
T PF03414_consen 98 NITIGLTVFATGKYIVFLKDFLESAEKHFMVGHRVIYYVFTDQPSKVPRIE-LGPGRRLKVFEVQ-----EE-----KRW 166 (337)
T ss_dssp T-EEEEEEEE-CCHHHHHHHHHHHHHHHBSTTSEEEEEEEES-GGGS-------TTEEEEEEE-S-----GG-----SSH
T ss_pred CceEEEEEEecccHHHHHHHHHHhHHHhccCCcEEEEEEEeCchhhCCccc-cCCCceeEEEEec-----cc-----CCC
Confidence 3344 5666778899999999999988 577778888777766543322 23332 233211 11 245
Q ss_pred HHHHhhhHHHHHHHHH----cCCe-EEEeecceeeecCCc
Q 021054 166 FNFTSRRPCHLLHILE----LGYN-VMYNDVDMVWLKDPF 200 (318)
Q Consensus 166 ~~m~~~K~~~l~~lL~----lGy~-VL~sDvDVVWLrdP~ 200 (318)
...+..|.+.+.+..+ ..+| +...|+|+++ +|++
T Consensus 167 qd~sm~Rm~~i~~~i~~~~~~EvDYLFc~dvd~~F-~~~v 205 (337)
T PF03414_consen 167 QDISMMRMEMISEHIEQHIQHEVDYLFCMDVDMVF-QDHV 205 (337)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHH-SEEEEEESSEEE--S-B
T ss_pred ccchhHHHHHHHHHHHHHHhhcCCEEEEEecceEE-eccc
Confidence 5566677777776543 3456 5667999997 6765
No 37
>COG0263 ProB Glutamate 5-kinase [Amino acid transport and metabolism]
Probab=41.67 E-value=2.8e+02 Score=27.67 Aligned_cols=88 Identities=16% Similarity=0.203 Sum_probs=56.0
Q ss_pred HHHHHHHHhhhcCCC-ccEEEEEeCHH-----------HHHHHhccCCC-ceEEcCCCCCCccccccCchhHHHHHhhhH
Q 021054 107 FLNNWLISISRQKHQ-DQVLVIAEDYA-----------TLYKVNGRWPG-HAVLVPPAPDSQTAHKFGSQGFFNFTSRRP 173 (318)
Q Consensus 107 ~l~Nwl~sl~~~gi~-~~vlVvAlD~~-----------a~~~c~~~~pg-~~v~~~~~~d~~~~~~~gs~~f~~m~~~K~ 173 (318)
++..|-..+.+.|+. -.+|+ +.|+- |+..|.++ | +++......-...+-+||..+-. .
T Consensus 85 Lm~~y~~~f~~~g~~v~QiLL-Tr~D~~~r~ry~Nar~Tl~~Ll~~--gvVPIINENDtva~~EikfGDND~L------s 155 (369)
T COG0263 85 LMQLYEELFARYGIKVGQILL-TRDDFSDRRRYLNARNTLSALLEL--GVVPIINENDTVATEEIKFGDNDTL------S 155 (369)
T ss_pred HHHHHHHHHHhcCCeeeEEEe-ehhhhhhHHHHHHHHHHHHHHHHC--CceeeecCCCceeeeeeeecCCchH------H
Confidence 888899999998873 34444 44432 22222222 3 34554332223456688876554 3
Q ss_pred HHHHHHHHcCCeEEEeecceeeecCCcCCc
Q 021054 174 CHLLHILELGYNVMYNDVDMVWLKDPFPYL 203 (318)
Q Consensus 174 ~~l~~lL~lGy~VL~sDvDVVWLrdP~~~~ 203 (318)
.++..+.+...=||+||+|=++-.||..+-
T Consensus 156 A~VA~lv~ADlLvlLsDiDGLyd~nPr~~p 185 (369)
T COG0263 156 ALVAILVGADLLVLLSDIDGLYDANPRTNP 185 (369)
T ss_pred HHHHHHhCCCEEEEEEccCcccCCCCCCCC
Confidence 445667788899999999999999996543
No 38
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=40.95 E-value=56 Score=28.64 Aligned_cols=45 Identities=20% Similarity=0.322 Sum_probs=38.7
Q ss_pred CCCCcchHHHHHHhhccCCeEEEEEeCcc--hHHHHHHHHHHhhhcC
Q 021054 75 AKWRDYTLSQAASFVAKNGTIIVCAVSQP--YLPFLNNWLISISRQK 119 (318)
Q Consensus 75 ~~~~~~~L~ell~~~A~~~tVIVt~~N~~--y~~~l~Nwl~sl~~~g 119 (318)
..|-+....+++++.+.++--|+-.+.++ ....++.|+.+.+..|
T Consensus 25 ~d~~h~g~~~l~~~i~~~GY~ilYlTaRp~~qa~~Tr~~L~~~~q~~ 71 (157)
T PF08235_consen 25 KDWTHPGAAELYRKIADNGYKILYLTARPIGQANRTRSWLAQHQQQG 71 (157)
T ss_pred chhhhhcHHHHHHHHHHCCeEEEEECcCcHHHHHHHHHHHHHHHhCC
Confidence 45999999999999999988888888887 4679999999987655
No 39
>COG1438 ArgR Arginine repressor [Transcription]
Probab=39.41 E-value=79 Score=27.55 Aligned_cols=61 Identities=21% Similarity=0.269 Sum_probs=49.9
Q ss_pred chHHHHHHhhccCCeEEEEEeCcchHHHHHHHHHHhhhcCC------CccEEEEEeCHHHHHHHhcc
Q 021054 80 YTLSQAASFVAKNGTIIVCAVSQPYLPFLNNWLISISRQKH------QDQVLVIAEDYATLYKVNGR 140 (318)
Q Consensus 80 ~~L~ell~~~A~~~tVIVt~~N~~y~~~l~Nwl~sl~~~gi------~~~vlVvAlD~~a~~~c~~~ 140 (318)
.-|++++-++-.++..||.=++-+.+..+.+.+.++..-++ .|-++|+|.|+++.+.|.+.
T Consensus 79 ~~~~~~v~~vd~~~~~ivlkT~PG~A~~ia~~lD~~~~~eIlGTIaGdDTilVi~r~~~~a~~l~~~ 145 (150)
T COG1438 79 RYLKDLVLSIDRNGNLIVLKTSPGAAQLIARLLDSLAKDEILGTIAGDDTILVICRSEETAKELYEE 145 (150)
T ss_pred HHHHHHheeeccCCcEEEEEeCCchHHHHHHHHHhcCchhhheeeeCCCeEEEEecCchhHHHHHHH
Confidence 34677788888888999999999999999999988766432 68899999999998887653
No 40
>cd08565 GDPD_pAtGDE_like Glycerophosphodiester phosphodiesterase domain of putative Agrobacterium tumefaciens glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative Agrobacterium tumefaciens glycerophosphodiester phosphodiesterase (pAtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=39.35 E-value=1.8e+02 Score=26.43 Aligned_cols=67 Identities=21% Similarity=0.227 Sum_probs=48.2
Q ss_pred CcchHHHHHHhhccCCe-EEEEEeCc----chHHHHHHHHHHhhhcCCCccEEEEEeCHHHHHHHhccCCCce
Q 021054 78 RDYTLSQAASFVAKNGT-IIVCAVSQ----PYLPFLNNWLISISRQKHQDQVLVIAEDYATLYKVNGRWPGHA 145 (318)
Q Consensus 78 ~~~~L~ell~~~A~~~t-VIVt~~N~----~y~~~l~Nwl~sl~~~gi~~~vlVvAlD~~a~~~c~~~~pg~~ 145 (318)
+.++|+|+++.....+. +.+=.-+. .+..+...-+.-+++.+..+++++...|.++.+.+++. |...
T Consensus 80 ~iptL~evl~~~~~~~~~l~iEiK~~~~~~~~~~~~~~v~~~i~~~~~~~~v~~~Sf~~~~l~~~~~~-p~~~ 151 (235)
T cd08565 80 KIPTLEEVLALFAPSGLELHVEIKTDADGTPYPGAAALAAATLRRHGLLERSVLTSFDPAVLTEVRKH-PGVR 151 (235)
T ss_pred CCCCHHHHHHHhhccCcEEEEEECCCCCCCccHHHHHHHHHHHHhCCCcCCEEEEECCHHHHHHHHhC-CCCc
Confidence 47799999987765443 33333222 24456666666777788878999999999999999998 8653
No 41
>cd08573 GDPD_GDE1 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE1 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE1 (also known as MIR16, membrane interacting protein of RGS16) and their metazoan homologs. GDE1 is widely expressed in mammalian tissues, including the heart, brain, liver, and kidney. It shows sequence homology to bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyzes the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. GDE1 has been characterized as GPI-GDE (EC 3.1.4.44) that selectively hydrolyzes extracellular glycerophosphoinositol (GPI) to generate glycerol phosphate and inositol. It functions as an integral membrane-bound glycoprotein interacting with regulator of G protein signaling protein RGS16, and is modulated by G
Probab=38.93 E-value=1.5e+02 Score=27.41 Aligned_cols=67 Identities=18% Similarity=0.125 Sum_probs=46.1
Q ss_pred CcchHHHHHHhhccCCe-EEEEEeCcchHHHHHHHHHHhhhcC-CCccEEEEEeCHHHHHHHhccCCCce
Q 021054 78 RDYTLSQAASFVAKNGT-IIVCAVSQPYLPFLNNWLISISRQK-HQDQVLVIAEDYATLYKVNGRWPGHA 145 (318)
Q Consensus 78 ~~~~L~ell~~~A~~~t-VIVt~~N~~y~~~l~Nwl~sl~~~g-i~~~vlVvAlD~~a~~~c~~~~pg~~ 145 (318)
+-++|+|+++.....+. +.+=.-+.. ..+.+.-+.-+++.+ ..++++|...|.++...+++..|...
T Consensus 87 ~iptL~evl~~~~~~~~~l~iEiK~~~-~~~~~~v~~~l~~~~~~~~~v~v~SF~~~~l~~~~~~~p~~~ 155 (258)
T cd08573 87 KIPTLEEAVKECLENNLRMIFDVKSNS-SKLVDALKNLFKKYPGLYDKAIVCSFNPIVIYKVRKADPKIL 155 (258)
T ss_pred CCCCHHHHHHHHHhcCCEEEEEeCCCc-HHHHHHHHHHHHHCCCccCCEEEEECCHHHHHHHHHhCCCce
Confidence 46799999988764443 433333222 244555555566666 67899999999999999998877643
No 42
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=37.35 E-value=1.5e+02 Score=23.41 Aligned_cols=102 Identities=19% Similarity=0.245 Sum_probs=51.0
Q ss_pred eEEEEEeCcchHHHHHHHHHHhhhc-CCCccEEEEEeCH--HHHHHHhcc---CCCceEEcCCCCCCccccccCchhHHH
Q 021054 94 TIIVCAVSQPYLPFLNNWLISISRQ-KHQDQVLVIAEDY--ATLYKVNGR---WPGHAVLVPPAPDSQTAHKFGSQGFFN 167 (318)
Q Consensus 94 tVIVt~~N~~y~~~l~Nwl~sl~~~-gi~~~vlVvAlD~--~a~~~c~~~---~pg~~v~~~~~~d~~~~~~~gs~~f~~ 167 (318)
+||+.+-|. .+.+...+.|+... .....++|+--.. ++.+.+++. .++..++..+. +. |
T Consensus 1 Svvip~~n~--~~~l~~~l~sl~~q~~~~~eiivvdd~s~d~~~~~~~~~~~~~~~i~~i~~~~-n~------g------ 65 (169)
T PF00535_consen 1 SVVIPTYNE--AEYLERTLESLLKQTDPDFEIIVVDDGSTDETEEILEEYAESDPNIRYIRNPE-NL------G------ 65 (169)
T ss_dssp EEEEEESS---TTTHHHHHHHHHHHSGCEEEEEEEECS-SSSHHHHHHHHHCCSTTEEEEEHCC-CS------H------
T ss_pred CEEEEeeCC--HHHHHHHHHHHhhccCCCEEEEEeccccccccccccccccccccccccccccc-cc------c------
Confidence 478888888 45667778887776 2234555543222 466666654 23344443211 10 0
Q ss_pred HHhhhHHHHHHHHHcCCeEEEeecceeeecCCcCCcC----C-CCceeee
Q 021054 168 FTSRRPCHLLHILELGYNVMYNDVDMVWLKDPFPYLQ----G-DHDVYFT 212 (318)
Q Consensus 168 m~~~K~~~l~~lL~lGy~VL~sDvDVVWLrdP~~~~~----~-~aDv~~s 212 (318)
....+...+.. ..|-=+++.|.|.+|..+=+..+. . +.|+++.
T Consensus 66 ~~~~~n~~~~~--a~~~~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~ 113 (169)
T PF00535_consen 66 FSAARNRGIKH--AKGEYILFLDDDDIISPDWLEELVEALEKNPPDVVIG 113 (169)
T ss_dssp HHHHHHHHHHH----SSEEEEEETTEEE-TTHHHHHHHHHHHCTTEEEEE
T ss_pred ccccccccccc--cceeEEEEeCCCceEcHHHHHHHHHHHHhCCCcEEEE
Confidence 01112222222 244478999999999766333331 2 4555554
No 43
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho
Probab=34.77 E-value=2.1e+02 Score=24.10 Aligned_cols=67 Identities=13% Similarity=0.029 Sum_probs=46.7
Q ss_pred cchHHHHHHhhccCCeEEEEEeCcc-hHHHHHHHHHHhhhcCCCccEEEEEeCHHHHHHHhccCCCce
Q 021054 79 DYTLSQAASFVAKNGTIIVCAVSQP-YLPFLNNWLISISRQKHQDQVLVIAEDYATLYKVNGRWPGHA 145 (318)
Q Consensus 79 ~~~L~ell~~~A~~~tVIVt~~N~~-y~~~l~Nwl~sl~~~gi~~~vlVvAlD~~a~~~c~~~~pg~~ 145 (318)
-.+|+|+++...++-.+++=.-... ..+++...+.-+++.+..+++++...|.+....+++..|...
T Consensus 48 i~tL~e~l~~~~~~~~i~leiK~~~~~~~~~~~l~~~i~~~~~~~~v~i~s~~~~~l~~~~~~~p~~~ 115 (189)
T cd08556 48 IPTLEEVLELVKGGVGLNIELKEPTRYPGLEAKVAELLREYGLEERVVVSSFDHEALRALKELDPEVP 115 (189)
T ss_pred CCCHHHHHHhcccCcEEEEEECCCCCchhHHHHHHHHHHHcCCcCCEEEEeCCHHHHHHHHHhCCCCc
Confidence 5799999987766333333333321 134566666667777777899999999999999988777654
No 44
>PF02863 Arg_repressor_C: Arginine repressor, C-terminal domain; InterPro: IPR020899 The arginine dihydrolase (AD) pathway is found in many prokaryotes and some primitive eukaryotes, an example of the latter being Giardia lamblia (Giardia intestinalis) []. The three-enzyme anaerobic pathway breaks down L-arginine to form 1 mol of ATP, carbon dioxide and ammonia. In simpler bacteria, the first enzyme, arginine deiminase, can account for up to 10% of total cell protein []. Most prokaryotic arginine deiminase pathways are under the control of a repressor gene, termed ArgR []. This is a negative regulator, and will only release the arginine deiminase operon for expression in the presence of arginine []. The crystal structure of apo-ArgR from Bacillus stearothermophilus has been determined to 2.5A by means of X-ray crystallography []. The protein exists as a hexamer of identical subunits, and is shown to have six DNA-binding domains, clustered around a central oligomeric core when bound to arginine. It predominantly interacts with A.T residues in ARG boxes. This hexameric protein binds DNA at its N terminus to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbour-joining tree, some of these paralogous sequences show long branches and differ significantly from the well-conserved C-terminal region. ; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1B4B_B 1B4A_A 3V4G_A 1F9N_F 2P5M_A 1XXA_E 1XXC_C 1XXB_F 3LAJ_D 3BUE_D ....
Probab=34.25 E-value=75 Score=23.65 Aligned_cols=57 Identities=11% Similarity=0.121 Sum_probs=39.9
Q ss_pred HHHHHhhccCCeEEEEEeCcchHHHHHHHHHHhhhcCC------CccEEEEEeCHHHHHHHhc
Q 021054 83 SQAASFVAKNGTIIVCAVSQPYLPFLNNWLISISRQKH------QDQVLVIAEDYATLYKVNG 139 (318)
Q Consensus 83 ~ell~~~A~~~tVIVt~~N~~y~~~l~Nwl~sl~~~gi------~~~vlVvAlD~~a~~~c~~ 139 (318)
++.+-++...+..++.-+-.++++.+.+.+..+.--++ .|-++|++.+++..+.+.+
T Consensus 3 ~~~v~sv~~~~~~vvikt~pG~A~~va~~iD~~~~~~I~GtIAgdDTilvi~~~~~~a~~l~~ 65 (70)
T PF02863_consen 3 KESVVSVERSDNMVVIKTLPGNAQAVAAAIDQLNLPEIFGTIAGDDTILVICRSEEDAEELEE 65 (70)
T ss_dssp HHHEEEEEEESSEEEEEESTTCHHHHHHHHHHHCGTTEEEEEEESSEEEEEESTTSHHHHHHH
T ss_pred hHhEEeEeccCCEEEEEeCCCcHHHHHHHHHhcCCcccEEEEeCCCEEEEEeCCHHHHHHHHH
Confidence 44444555444455556668889999999988766433 6889999999888777654
No 45
>cd08574 GDPD_GDE_2_3_6 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2, GDE3, GDE6-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian glycerophosphodiester phosphodiesterase domain-containing protein subtype 5 (GDE2), subtype 2 (GDE3), subtype 1 (GDE6), and their eukaryotic homologs. Mammalian GDE2, GDE3, and GDE6 show very high sequence similarity to each other and have been classified into the same family. Although they are all transmembrane proteins, based on different pattern of tissue distribution, these enzymes might display diverse cellular functions. Mammalian GDE2 is primarily expressed in mature neurons. It selectively hydrolyzes glycerophosphocholine (GPC) and mainly functions in a complex with an antioxidant scavenger peroxiredoxin1 (Prdx1) to control motor neuron differentiation in the spinal cord. Mammalian GDE3 is specifically expressed in bo
Probab=32.47 E-value=4e+02 Score=24.48 Aligned_cols=67 Identities=19% Similarity=0.151 Sum_probs=42.0
Q ss_pred CcchHHHHHHhhcc-CCeEEEEEeCc----ch-HHHHHHHHHHhhhcCCCccEEEEEeCHHHHHHHhccCCCce
Q 021054 78 RDYTLSQAASFVAK-NGTIIVCAVSQ----PY-LPFLNNWLISISRQKHQDQVLVIAEDYATLYKVNGRWPGHA 145 (318)
Q Consensus 78 ~~~~L~ell~~~A~-~~tVIVt~~N~----~y-~~~l~Nwl~sl~~~gi~~~vlVvAlD~~a~~~c~~~~pg~~ 145 (318)
.-++|+|+++.+.. +..+.+=.-.. .+ ..+.+.-+.-+++.++.++.+++.-+. ..+.+++..|...
T Consensus 112 ~IPtL~evl~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~v~~~l~~~~~~~~~v~~s~~~-~~~~~~~~~p~~~ 184 (252)
T cd08574 112 SIPSLAELLRLAKKHNKSVIFDLRRPPPNHPYYQSYVNITLDTILASGIPQHQVFWLPDE-YRALVRKVAPGFQ 184 (252)
T ss_pred CCCCHHHHHHHHHHcCCeEEEEecCCcccCccHHHHHHHHHHHHHHcCCCcccEEEccHH-HHHHHHHHCCCCe
Confidence 57799999998774 33444433321 12 346666677777777756665555554 3677887777654
No 46
>cd08583 PI-PLCc_GDPD_SF_unchar1 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=31.60 E-value=3.9e+02 Score=24.07 Aligned_cols=66 Identities=8% Similarity=0.045 Sum_probs=42.6
Q ss_pred CcchHHHHHHhhcc-CCe-EEEEEeCc---chHHHHHHHHHHhhhc--CCCccEEEEEeCHHHHHHHhccCCC
Q 021054 78 RDYTLSQAASFVAK-NGT-IIVCAVSQ---PYLPFLNNWLISISRQ--KHQDQVLVIAEDYATLYKVNGRWPG 143 (318)
Q Consensus 78 ~~~~L~ell~~~A~-~~t-VIVt~~N~---~y~~~l~Nwl~sl~~~--gi~~~vlVvAlD~~a~~~c~~~~pg 143 (318)
..++|+|++..... .+. +.+=.-.. .+..+...-+..+++. +..+++++...|.++++.+++..|.
T Consensus 84 ~iptL~evl~~~~~~~~~~l~iEiK~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~SF~~~~L~~~~~~~p~ 156 (237)
T cd08583 84 TPMDFKDVIDLLKKYPDVYIVTDTKQDDDNDIKKLYEYIVKEAKEVDPDLLDRVIPQIYNEEMYEAIMSIYPF 156 (237)
T ss_pred CCCCHHHHHHHHHhCCCeEEEEEecCCCcccHHHHHHHHHHHHHhhcccccceeEEEecCHHHHHHHHHhCCC
Confidence 46799999988774 332 22212111 2333445556666654 3567899999999999999887664
No 47
>PF04765 DUF616: Protein of unknown function (DUF616); InterPro: IPR006852 The entry represents a protein of unknown function. The function of is unknown although a number of the members are thought to be glycosyltransferases.
Probab=31.05 E-value=85 Score=30.47 Aligned_cols=110 Identities=22% Similarity=0.308 Sum_probs=71.4
Q ss_pred HHHHHHHHHcCCe-EEEeecceeeecCCcCCcC-----CCCceeeec----cccc--------ccCCCC-----------
Q 021054 173 PCHLLHILELGYN-VMYNDVDMVWLKDPFPYLQ-----GDHDVYFTD----DMAA--------VKPLDH----------- 223 (318)
Q Consensus 173 ~~~l~~lL~lGy~-VL~sDvDVVWLrdP~~~~~-----~~aDv~~s~----D~~~--------~~~~d~----------- 223 (318)
++++-..+=-.|+ -++.|+-+....||...+. .++|+.++. ++.. .+..+.
T Consensus 142 ~K~lpHrlfp~y~ySIWID~ki~L~~Dp~~lie~~l~~~~~~~Ai~~H~~R~cvyeEa~a~~~~~k~~~~~I~~Qm~~Y~ 221 (305)
T PF04765_consen 142 PKLLPHRLFPNYDYSIWIDGKIQLIVDPLLLIERFLWRKNADIAISKHPERNCVYEEAEACKRLGKYDPERIDEQMEFYK 221 (305)
T ss_pred cceeccccCCCCceEEEEeeeEEEecCHHHHHHHHHhcCCCcEEEeCCCCcccHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 5555555555666 4899999999999976553 367888751 1110 000010
Q ss_pred CCCCCCCC--CCC--CcccceeEEEEecChHHHHHHHHHHHHHHcCCcccCCCCCChHHHHHHHhhcCC
Q 021054 224 SHDLPPPG--KKG--RTYICSCMIYLRPTDGAKLVMKKWIEELQAEPWSKAKKANDQPAFNWALNKTAG 288 (318)
Q Consensus 224 ~~~~p~~g--~~g--~~~~NtGf~y~R~T~~t~~f~~~W~~~l~~~p~~~~~~~~DQ~afN~ll~~~~~ 288 (318)
.+++|+.. +.+ ....-++++.=+.|+.+..|+..|-..+.+. ...||-.|+-++.+...
T Consensus 222 ~eGlp~~s~~k~~l~s~v~E~~iIiR~H~~~~nlf~clWfnEv~rf------s~RDQLSF~Yv~wk~~~ 284 (305)
T PF04765_consen 222 QEGLPPWSPAKLPLPSDVPEGNIIIRKHNPMSNLFMCLWFNEVERF------SPRDQLSFPYVLWKLGP 284 (305)
T ss_pred HcCCCcccccccccccCCccceEEEecCCchhHHHHHHHHHHHhcC------CCcccchHHHHHHHhCC
Confidence 23344331 111 1133567888888888888999999999875 57999999999987654
No 48
>PRK14762 membrane protein; Provisional
Probab=30.75 E-value=68 Score=19.59 Aligned_cols=11 Identities=64% Similarity=0.960 Sum_probs=9.7
Q ss_pred HHHHHHHHHhh
Q 021054 46 LLSLLVVLGVI 56 (318)
Q Consensus 46 ~~~~~~~~~~~ 56 (318)
+++|++|-|+|
T Consensus 13 ligllvvtgvf 23 (27)
T PRK14762 13 LIGLLVVTGVF 23 (27)
T ss_pred HHHHHHHHHHH
Confidence 88889998987
No 49
>cd08582 GDPD_like_2 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity to Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=28.32 E-value=2.6e+02 Score=25.05 Aligned_cols=130 Identities=18% Similarity=0.209 Sum_probs=69.9
Q ss_pred CcchHHHHHHhhccCCe-EEEEEeCc-chHHHHHHHHHHhhhc-CCCccEEEEEeCHHHHHHHhccCCCceEEc--CCCC
Q 021054 78 RDYTLSQAASFVAKNGT-IIVCAVSQ-PYLPFLNNWLISISRQ-KHQDQVLVIAEDYATLYKVNGRWPGHAVLV--PPAP 152 (318)
Q Consensus 78 ~~~~L~ell~~~A~~~t-VIVt~~N~-~y~~~l~Nwl~sl~~~-gi~~~vlVvAlD~~a~~~c~~~~pg~~v~~--~~~~ 152 (318)
.-++|+|+++.....+. +++=.=.. ....+....+.-+++. +..+++++.+.|.+..+.+++..|.+.... ....
T Consensus 85 ~iptL~evl~~~~~~~~~l~ieiK~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sf~~~~l~~~~~~~p~~~~~~l~~~~~ 164 (233)
T cd08582 85 KVPTLEEYLAIVPKYGKKLFIEIKHPRRGPEAEEELLKLLKESGLLPEQIVIISFDAEALKRVRELAPTLETLWLRNYKS 164 (233)
T ss_pred cCCCHHHHHHHHHhcCceEEEEeCCCccCccHHHHHHHHHHHcCCCCCCEEEEecCHHHHHHHHHHCCCCcEEEEeccCc
Confidence 46799999988765343 33333321 1223444455555665 345899999999999999998877654321 1111
Q ss_pred CCcc----ccccCchhH-HHHHh-hhHHHHHHHHHcCCeEEEeecceeeecCCcCC----cCCCCceeeec
Q 021054 153 DSQT----AHKFGSQGF-FNFTS-RRPCHLLHILELGYNVMYNDVDMVWLKDPFPY----LQGDHDVYFTD 213 (318)
Q Consensus 153 d~~~----~~~~gs~~f-~~m~~-~K~~~l~~lL~lGy~VL~sDvDVVWLrdP~~~----~~~~aDv~~s~ 213 (318)
+... ....+..+. ....+ ....++..+-+.|..|. +|.-|--.. +..+.|.++++
T Consensus 165 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~~~~~G~~v~------~wTvn~~~~~~~l~~~GVdgi~TD 229 (233)
T cd08582 165 PKEDPRPLAKSGGAAGLDLSYEKKLNPAFIKALRDAGLKLN------VWTVDDAEDAKRLIELGVDSITTN 229 (233)
T ss_pred cccchhHHHHhhCceEEcccccccCCHHHHHHHHHCCCEEE------EEeCCCHHHHHHHHHCCCCEEEcC
Confidence 0000 000000000 00112 46778888888888874 355443221 12356666653
No 50
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=27.87 E-value=4.9e+02 Score=25.22 Aligned_cols=92 Identities=20% Similarity=0.221 Sum_probs=45.9
Q ss_pred eEEEEEeCcchHHHHHHHHHHhhhcCCCc-cEEEEE--eCHHHHHH---HhccCCCc--eEEcCCCCCCccccccCchhH
Q 021054 94 TIIVCAVSQPYLPFLNNWLISISRQKHQD-QVLVIA--EDYATLYK---VNGRWPGH--AVLVPPAPDSQTAHKFGSQGF 165 (318)
Q Consensus 94 tVIVt~~N~~y~~~l~Nwl~sl~~~gi~~-~vlVvA--lD~~a~~~---c~~~~pg~--~v~~~~~~d~~~~~~~gs~~f 165 (318)
+||+..-|++ +.+..-++|+.++...+ .++|+. -|+.|.+. +.+.+|+. .++..+. ...+.
T Consensus 44 SViiP~~nee--~~l~~~L~Sl~~q~Yp~~EIivvdd~s~D~t~~iv~~~~~~~p~~~i~~v~~~~-----~~G~~---- 112 (373)
T TIGR03472 44 SVLKPLHGDE--PELYENLASFCRQDYPGFQMLFGVQDPDDPALAVVRRLRADFPDADIDLVIDAR-----RHGPN---- 112 (373)
T ss_pred EEEEECCCCC--hhHHHHHHHHHhcCCCCeEEEEEeCCCCCcHHHHHHHHHHhCCCCceEEEECCC-----CCCCC----
Confidence 6777777775 45667778887766532 333321 12333333 33445542 2232211 11111
Q ss_pred HHHHhhhHHHHHHHHH--cCCeEEEeecceeeecCCcC
Q 021054 166 FNFTSRRPCHLLHILE--LGYNVMYNDVDMVWLKDPFP 201 (318)
Q Consensus 166 ~~m~~~K~~~l~~lL~--lGy~VL~sDvDVVWLrdP~~ 201 (318)
.|...+...++ .|=-++++|+|+++-.|-+.
T Consensus 113 -----~K~~~l~~~~~~a~ge~i~~~DaD~~~~p~~L~ 145 (373)
T TIGR03472 113 -----RKVSNLINMLPHARHDILVIADSDISVGPDYLR 145 (373)
T ss_pred -----hHHHHHHHHHHhccCCEEEEECCCCCcChhHHH
Confidence 13333333332 34458999999999555443
No 51
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=26.38 E-value=3.7e+02 Score=23.27 Aligned_cols=92 Identities=17% Similarity=0.131 Sum_probs=44.3
Q ss_pred EEEEeCcchHHHHHHHHHHhhhcCCCccEEEE--EeCHHHHHHHhccCCCceEEcCCCCCCccccccCchhHHHHHhhhH
Q 021054 96 IVCAVSQPYLPFLNNWLISISRQKHQDQVLVI--AEDYATLYKVNGRWPGHAVLVPPAPDSQTAHKFGSQGFFNFTSRRP 173 (318)
Q Consensus 96 IVt~~N~~y~~~l~Nwl~sl~~~gi~~~vlVv--AlD~~a~~~c~~~~pg~~v~~~~~~d~~~~~~~gs~~f~~m~~~K~ 173 (318)
|+.+-|..- +.+...++|+.... ..++|+ +-|+.+....+...++..++..+. ..++ ...+-
T Consensus 2 vI~~yn~~~-~~l~~~l~sl~~q~--~~iivvDn~s~~~~~~~~~~~~~~i~~i~~~~-----n~G~--------~~a~N 65 (237)
T cd02526 2 VVVTYNPDL-SKLKELLAALAEQV--DKVVVVDNSSGNDIELRLRLNSEKIELIHLGE-----NLGI--------AKALN 65 (237)
T ss_pred EEEEecCCH-HHHHHHHHHHhccC--CEEEEEeCCCCccHHHHhhccCCcEEEEECCC-----ceeh--------HHhhh
Confidence 444555542 66778888887762 345444 222233222221123344443211 0111 11223
Q ss_pred HHHHHHHHcCCe-EEEeecceeeecCCcCCc
Q 021054 174 CHLLHILELGYN-VMYNDVDMVWLKDPFPYL 203 (318)
Q Consensus 174 ~~l~~lL~lGy~-VL~sDvDVVWLrdP~~~~ 203 (318)
.-+......|++ +++.|.|+.+-.|-++.+
T Consensus 66 ~g~~~a~~~~~d~v~~lD~D~~~~~~~l~~l 96 (237)
T cd02526 66 IGIKAALENGADYVLLFDQDSVPPPDMVEKL 96 (237)
T ss_pred HHHHHHHhCCCCEEEEECCCCCcCHhHHHHH
Confidence 333333334665 789999999955545554
No 52
>cd08564 GDPD_GsGDE_like Glycerophosphodiester phosphodiesterase domain of putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase (GsGDE, EC 3.1.4.46) and its uncharacterized eukaryotic homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=24.41 E-value=3.5e+02 Score=24.95 Aligned_cols=66 Identities=11% Similarity=-0.141 Sum_probs=45.0
Q ss_pred CCcchHHHHHHhhccCCeEEEEEeCcchHHHHHHHHHHhhhcCCCccEEEEEeCH-HHHHHHhccCCC
Q 021054 77 WRDYTLSQAASFVAKNGTIIVCAVSQPYLPFLNNWLISISRQKHQDQVLVIAEDY-ATLYKVNGRWPG 143 (318)
Q Consensus 77 ~~~~~L~ell~~~A~~~tVIVt~~N~~y~~~l~Nwl~sl~~~gi~~~vlVvAlD~-~a~~~c~~~~pg 143 (318)
-.-++|+|+++.+..+-.+.+=.- .....+...-+.-+++.|..+++++...|. ++.+.+++..|.
T Consensus 105 ~~iptL~evl~~~~~~~~l~iEiK-~~~~~~~~~v~~~l~~~~~~~~v~i~SF~~~~~l~~~~~~~~~ 171 (265)
T cd08564 105 EKIPTLEDVLVTFKDKLKYNIELK-GREVGLGERVLNLVEKYGMILQVHFSSFLHYDRLDLLKALRPN 171 (265)
T ss_pred ccCCCHHHHHHHhccCcEEEEEeC-CCchhHHHHHHHHHHHcCCCCCEEEEecCchhHHHHHHHhCcC
Confidence 356899999997765222222222 111345566666778888878999999999 998888887665
No 53
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=23.93 E-value=2.5e+02 Score=24.25 Aligned_cols=54 Identities=13% Similarity=0.023 Sum_probs=38.8
Q ss_pred CcchHHHHHHhhccCCeEEEEEeCcchHHHHHHHHHHhhhcCCCccEEEEEeCHHHH
Q 021054 78 RDYTLSQAASFVAKNGTIIVCAVSQPYLPFLNNWLISISRQKHQDQVLVIAEDYATL 134 (318)
Q Consensus 78 ~~~~L~ell~~~A~~~tVIVt~~N~~y~~~l~Nwl~sl~~~gi~~~vlVvAlD~~a~ 134 (318)
..=||+|+..-.+.++.|++...+..|.+++... +...+..+..++++.|.+..
T Consensus 101 G~GTL~E~~~a~~~~kpv~~l~~~g~~~~~l~~~---~~~~~~~~~~~~~~~~~~e~ 154 (159)
T TIGR00725 101 GYGTAIEILGAYALGGPVVVLRGTGGWTDRLSQV---LIEGVYLDERVIVEITPAEA 154 (159)
T ss_pred chhHHHHHHHHHHcCCCEEEEECCCcchHHHHHH---HhccccccceeEecCCHHHH
Confidence 3458999999888899999999888888876643 33334445566777777653
No 54
>cd08566 GDPD_AtGDE_like Glycerophosphodiester phosphodiesterase domain of Agrobacterium tumefaciens and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Agrobacterium tumefaciens glycerophosphodiester phosphodiesterase (AtGDE, EC 3.1.4.46) and its uncharacterized eukaryotic homolgoues. Members in this family shows high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. AtGDE exists as a hexamer that is a trimer of dimers, which is unique among current known GDPD family members. However, it remains unclear if the hexamer plays a physiological role in AtGDE enzymatic function.
Probab=23.83 E-value=4.8e+02 Score=23.68 Aligned_cols=65 Identities=12% Similarity=0.106 Sum_probs=44.2
Q ss_pred CCcchHHHHHHhhccCCeEEEEEeCcchHHHHHHHHHHhhhcCCCccEEEEEeCHHHHHHHhccCCCce
Q 021054 77 WRDYTLSQAASFVAKNGTIIVCAVSQPYLPFLNNWLISISRQKHQDQVLVIAEDYATLYKVNGRWPGHA 145 (318)
Q Consensus 77 ~~~~~L~ell~~~A~~~tVIVt~~N~~y~~~l~Nwl~sl~~~gi~~~vlVvAlD~~a~~~c~~~~pg~~ 145 (318)
.+-++|+|+++....+ ..+..=.-.. .....+.-+++.+..+++++.+.|.++++.+++..|.+.
T Consensus 85 ~~iptL~evl~~~~~~-~~l~iEiK~~---~~~~~~~~~~~~~~~~~v~~~sf~~~~l~~~~~~~p~~~ 149 (240)
T cd08566 85 EKVPTLEEALAWAKGK-ILLNLDLKDA---DLDEVIALVKKHGALDQVIFKSYSEEQAKELRALAPEVM 149 (240)
T ss_pred CCCCCHHHHHHhhhcC-cEEEEEECch---HHHHHHHHHHHcCCcccEEEEECCHHHHHHHHHhCCCCE
Confidence 4578999999876543 2222222222 234444556667777889999999999999998888754
No 55
>cd08601 GDPD_SaGlpQ_like Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) from Staphylococcus aureus, Bacillus subtilis and similar proteins. Members in this family show very high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=23.26 E-value=2.6e+02 Score=25.52 Aligned_cols=70 Identities=13% Similarity=0.091 Sum_probs=46.0
Q ss_pred CCCcchHHHHHHhhccCCeEEEEEe-CcchHHHHHHHHHHhhhcCCC------ccEEEEEeCHHHHHHHhccCCCce
Q 021054 76 KWRDYTLSQAASFVAKNGTIIVCAV-SQPYLPFLNNWLISISRQKHQ------DQVLVIAEDYATLYKVNGRWPGHA 145 (318)
Q Consensus 76 ~~~~~~L~ell~~~A~~~tVIVt~~-N~~y~~~l~Nwl~sl~~~gi~------~~vlVvAlD~~a~~~c~~~~pg~~ 145 (318)
.-.-++|+|++.....+-.+.+=.- ...+..+.+....-+++.++. +++++.+.|.++.+.+.+..|...
T Consensus 95 ~~~iptL~evl~~~~~~~~l~IEiK~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~v~i~Sf~~~~l~~~~~~~p~~~ 171 (256)
T cd08601 95 GLKVPTLEEVIERYGGRANYYIETKSPDLYPGMEEKLLATLDKYGLLTDNLKNGQVIIQSFSKESLKKLHQLNPNIP 171 (256)
T ss_pred CccCCCHHHHHHHhccCceEEEEeeCCCCCCCHHHHHHHHHHHcCCCcccCCCCCEEEecCCHHHHHHHHHhCCCCc
Confidence 3457899999987654333333222 222233555555666777765 789999999999999988766543
No 56
>cd08568 GDPD_TmGDE_like Glycerophosphodiester phosphodiesterase domain of Thermotoga maritime and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermotoga maritime glycerophosphodiester phosphodiesterase (TmGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. TmGDE exists as a monomer that might be the biologically relevant form.
Probab=23.07 E-value=4.2e+02 Score=23.62 Aligned_cols=65 Identities=14% Similarity=0.036 Sum_probs=43.4
Q ss_pred CcchHHHHHHhhccCCeEEEEEeCcchHHHHHHHHHHhhhcCCCccEEEEEeCHHHHHHHhccCCCce
Q 021054 78 RDYTLSQAASFVAKNGTIIVCAVSQPYLPFLNNWLISISRQKHQDQVLVIAEDYATLYKVNGRWPGHA 145 (318)
Q Consensus 78 ~~~~L~ell~~~A~~~tVIVt~~N~~y~~~l~Nwl~sl~~~gi~~~vlVvAlD~~a~~~c~~~~pg~~ 145 (318)
+-++|+|+++....+..+.+=.=.... ..--+.-+++.+..+++++...|.++++.+++..|...
T Consensus 78 ~iPtL~evl~~~~~~~~l~iEiK~~~~---~~~~~~~l~~~~~~~~v~i~SF~~~~l~~~~~~~p~~~ 142 (226)
T cd08568 78 LIPTLEEVFRALPNDAIINVEIKDIDA---VEPVLEIVEKFNALDRVIFSSFNHDALRELRKLDPDAK 142 (226)
T ss_pred cCCCHHHHHHhcCCCcEEEEEECCccH---HHHHHHHHHHcCCCCcEEEEECCHHHHHHHHHhCCCCc
Confidence 467999999876443333333332222 23334455666767899999999999999998877643
No 57
>PF02484 Rhabdo_NV: Rhabdovirus Non-virion protein; InterPro: IPR003490 Infectious hematopoietic necrosis virus (IHNV) is a member of the family Rhabdoviridae. The non-virion protein (NV) is coded for by one of the six genes of the IHNV genome [], but is absent in vesiculovirus-like rhabdovirus [].
Probab=22.11 E-value=1.1e+02 Score=24.63 Aligned_cols=22 Identities=23% Similarity=0.434 Sum_probs=17.4
Q ss_pred HHHHcCCeEEEeecceeeecCC
Q 021054 178 HILELGYNVMYNDVDMVWLKDP 199 (318)
Q Consensus 178 ~lL~lGy~VL~sDvDVVWLrdP 199 (318)
+.--.|+.++|-|.|+||-.+-
T Consensus 20 k~~va~hgflfddg~~vw~e~~ 41 (111)
T PF02484_consen 20 KNEVARHGFLFDDGDIVWSEDD 41 (111)
T ss_pred HhhccccceEecCCcEEEecCC
Confidence 3344799999999999997654
No 58
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=22.03 E-value=58 Score=27.62 Aligned_cols=71 Identities=17% Similarity=0.258 Sum_probs=33.7
Q ss_pred hhHHHHHHHHHcCCeEEEeecceeeecCCcCCcCCCCceeeecccccccCCCCCCCCCCCCCCCCccccee-EEEEecCh
Q 021054 171 RRPCHLLHILELGYNVMYNDVDMVWLKDPFPYLQGDHDVYFTDDMAAVKPLDHSHDLPPPGKKGRTYICSC-MIYLRPTD 249 (318)
Q Consensus 171 ~K~~~l~~lL~lGy~VL~sDvDVVWLrdP~~~~~~~aDv~~s~D~~~~~~~d~~~~~p~~g~~g~~~~NtG-f~y~R~T~ 249 (318)
.++.+...+-+.|++|+.+|..-. .=| .-+. ++-+|.++. .. .-+-+.+ +|-+||.+
T Consensus 24 ~~~~vA~~L~~~G~dV~~tDi~~~--~a~-~g~~-----~v~DDif~P----------~l----~iY~~a~lIYSiRPP~ 81 (127)
T PF03686_consen 24 FNPEVAKKLKERGFDVIATDINPR--KAP-EGVN-----FVVDDIFNP----------NL----EIYEGADLIYSIRPPP 81 (127)
T ss_dssp T--HHHHHHHHHS-EEEEE-SS-S-------STT-----EE---SSS------------H----HHHTTEEEEEEES--T
T ss_pred CCHHHHHHHHHcCCcEEEEECccc--ccc-cCcc-----eeeecccCC----------CH----HHhcCCcEEEEeCCCh
Confidence 368888899999999999998655 111 1111 122343320 00 0122334 45578988
Q ss_pred HHHHHHHHHHHHHH
Q 021054 250 GAKLVMKKWIEELQ 263 (318)
Q Consensus 250 ~t~~f~~~W~~~l~ 263 (318)
.-...+-+..+...
T Consensus 82 El~~~il~lA~~v~ 95 (127)
T PF03686_consen 82 ELQPPILELAKKVG 95 (127)
T ss_dssp TSHHHHHHHHHHHT
T ss_pred HHhHHHHHHHHHhC
Confidence 87777766666653
No 59
>PRK11204 N-glycosyltransferase; Provisional
Probab=21.22 E-value=7.1e+02 Score=24.19 Aligned_cols=90 Identities=14% Similarity=0.114 Sum_probs=44.7
Q ss_pred eEEEEEeCcchHHHHHHHHHHhhhcCCCc-cEEEEE--eCHHHHHHHhc---cCCCceEEcCCCCCCccccccCchhHHH
Q 021054 94 TIIVCAVSQPYLPFLNNWLISISRQKHQD-QVLVIA--EDYATLYKVNG---RWPGHAVLVPPAPDSQTAHKFGSQGFFN 167 (318)
Q Consensus 94 tVIVt~~N~~y~~~l~Nwl~sl~~~gi~~-~vlVvA--lD~~a~~~c~~---~~pg~~v~~~~~~d~~~~~~~gs~~f~~ 167 (318)
+|++.+-|+. +.+..-++|+.+....+ .++|+. -++++.+.+++ .+|++.+...+. +. |
T Consensus 57 sViIp~yne~--~~i~~~l~sl~~q~yp~~eiiVvdD~s~d~t~~~l~~~~~~~~~v~~i~~~~-n~------G------ 121 (420)
T PRK11204 57 SILVPCYNEG--ENVEETISHLLALRYPNYEVIAINDGSSDNTGEILDRLAAQIPRLRVIHLAE-NQ------G------ 121 (420)
T ss_pred EEEEecCCCH--HHHHHHHHHHHhCCCCCeEEEEEECCCCccHHHHHHHHHHhCCcEEEEEcCC-CC------C------
Confidence 5566666664 56777788887765533 333331 22345554443 244444443111 00 1
Q ss_pred HHhhhHHHHHHHH--HcCCeEEEeecceeeecCCcCC
Q 021054 168 FTSRRPCHLLHIL--ELGYNVMYNDVDMVWLKDPFPY 202 (318)
Q Consensus 168 m~~~K~~~l~~lL--~lGy~VL~sDvDVVWLrdP~~~ 202 (318)
|...+...+ ..|=-+++.|+|.++-.|=+..
T Consensus 122 ----ka~aln~g~~~a~~d~i~~lDaD~~~~~d~L~~ 154 (420)
T PRK11204 122 ----KANALNTGAAAARSEYLVCIDGDALLDPDAAAY 154 (420)
T ss_pred ----HHHHHHHHHHHcCCCEEEEECCCCCCChhHHHH
Confidence 111111111 1344579999999996554443
No 60
>PLN02769 Probable galacturonosyltransferase
Probab=20.98 E-value=9.9e+02 Score=25.70 Aligned_cols=117 Identities=13% Similarity=-0.013 Sum_probs=55.3
Q ss_pred hhHHHHHHHHHcCCeEEEeecceeeecCCcCCcCC---CCceeeeccccc-ccCCCCCCCCCCCCCCCCcccceeEEEE-
Q 021054 171 RRPCHLLHILELGYNVMYNDVDMVWLKDPFPYLQG---DHDVYFTDDMAA-VKPLDHSHDLPPPGKKGRTYICSCMIYL- 245 (318)
Q Consensus 171 ~K~~~l~~lL~lGy~VL~sDvDVVWLrdP~~~~~~---~aDv~~s~D~~~-~~~~d~~~~~p~~g~~g~~~~NtGf~y~- 245 (318)
.|.. +-+++..=-.|||.|.|||-.+|-.+.+.- +.=+....|+.. .+.....-... .......+.|+|++.+
T Consensus 441 ~Rfy-IPELLP~LdKVLYLD~DVVVqgDLseLw~iDL~gkviAAVedc~~rl~~~~~yl~~~-~F~~~~CyFNSGVLLIN 518 (629)
T PLN02769 441 SHFL-LPEIFKKLKKVVVLDDDVVVQRDLSFLWNLDMGGKVNGAVQFCGVRLGQLKNYLGDT-NFDTNSCAWMSGLNVID 518 (629)
T ss_pred HHHH-HHHHhhhcCeEEEEeCCEEecCcHHHHhcCCCCCCeEEEehhhhhhhhhhhhhhccc-CCCccccccccCeeEee
Confidence 3443 445565212799999999999987665542 221222223211 00000000000 0001124689999998
Q ss_pred ----ecChHHHHHHHHHHHHHHcCCcccCCCCCChHHHHHHHhhcCCCcc
Q 021054 246 ----RPTDGAKLVMKKWIEELQAEPWSKAKKANDQPAFNWALNKTAGQVC 291 (318)
Q Consensus 246 ----R~T~~t~~f~~~W~~~l~~~p~~~~~~~~DQ~afN~ll~~~~~~~~ 291 (318)
|-..-+..+.+ |.+...+.. ...-+..+|+++|.++.+....+|
T Consensus 519 L~~WRk~nITe~~~~-~~~~~~~~~-~~~~~~~~Lp~lnlvF~g~v~~LD 566 (629)
T PLN02769 519 LDKWRELDVTETYLK-LLQKFSKDG-EESLRAAALPASLLTFQDLIYPLD 566 (629)
T ss_pred HHHHHHhCHHHHHHH-HHHHhhhcc-cccccccCcCHHHHHhcCeEEECC
Confidence 44444444443 444432210 001134567777777776544443
No 61
>TIGR01529 argR_whole arginine repressor. This model includes most members of the arginine-responsive transcriptional regulator family ArgR. This hexameric protein binds DNA at its amino end to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbor-joining tree, some of these paralogous sequences show long branches and differ significantly in an otherwise well-conserved C-terminal region motif GT[VIL][AC]GDDT. These paralogs are excluded from the seed and score in the gray zone of this model, between trusted and noise cutoffs.
Probab=20.95 E-value=2.5e+02 Score=24.00 Aligned_cols=59 Identities=20% Similarity=0.260 Sum_probs=42.6
Q ss_pred hHHHHHH----hhccCCeEEEEEeCcchHHHHHHHHHHhhhcCC------CccEEEEEeCHHHHHHHhc
Q 021054 81 TLSQAAS----FVAKNGTIIVCAVSQPYLPFLNNWLISISRQKH------QDQVLVIAEDYATLYKVNG 139 (318)
Q Consensus 81 ~L~ell~----~~A~~~tVIVt~~N~~y~~~l~Nwl~sl~~~gi------~~~vlVvAlD~~a~~~c~~ 139 (318)
.|+..++ ++......||.-+.-+++..+.+.+.+++--++ .|-++|++-|++..+.+.+
T Consensus 72 ~l~~~~~~~v~~v~~~~~~vvikT~pG~A~~va~~iD~~~~~~i~GtiAGdDTilii~~~~~~a~~~~~ 140 (146)
T TIGR01529 72 KLKRLLKNLVLSIDRAGNLIVIRTKPGEASVIANLLDRLDKDEILGTIAGDDTILVICRDPETAELLME 140 (146)
T ss_pred HHHHHHHHHeeEeeccCCEEEEEeCCCcHHHHHHHHHhCCCCceEEEEecCCEEEEEECCHHHHHHHHH
Confidence 4555554 444566777777888889989999988765322 6889999999998777654
No 62
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=20.58 E-value=2.8e+02 Score=19.63 Aligned_cols=42 Identities=5% Similarity=-0.061 Sum_probs=28.6
Q ss_pred cchHHHHHHhhccCCeEEEEEeCcchHHHHHHHHHHhhhcCC
Q 021054 79 DYTLSQAASFVAKNGTIIVCAVSQPYLPFLNNWLISISRQKH 120 (318)
Q Consensus 79 ~~~L~ell~~~A~~~tVIVt~~N~~y~~~l~Nwl~sl~~~gi 120 (318)
....+++++.+++.|.-.++.++..-..-...+.+-.+..|+
T Consensus 14 ~~~~~~~~~~a~~~g~~~v~iTDh~~~~~~~~~~~~~~~~gi 55 (67)
T smart00481 14 ALSPEELVKRAKELGLKAIAITDHGNLFGAVEFYKAAKKAGI 55 (67)
T ss_pred cCCHHHHHHHHHHcCCCEEEEeeCCcccCHHHHHHHHHHcCC
Confidence 456899999999999888888888743333344444444555
No 63
>PRK03341 arginine repressor; Provisional
Probab=20.17 E-value=2.3e+02 Score=25.07 Aligned_cols=58 Identities=19% Similarity=0.148 Sum_probs=42.8
Q ss_pred HHHHHhhccCCeEEEEEeCcchHHHHHHHHHHhhhcCC------CccEEEEEeCHHHHHHHhcc
Q 021054 83 SQAASFVAKNGTIIVCAVSQPYLPFLNNWLISISRQKH------QDQVLVIAEDYATLYKVNGR 140 (318)
Q Consensus 83 ~ell~~~A~~~tVIVt~~N~~y~~~l~Nwl~sl~~~gi------~~~vlVvAlD~~a~~~c~~~ 140 (318)
.+.+.++......+|.-+.-+++..+.+.+..+.--++ .|-++|++-|.+..+.+.+.
T Consensus 97 ~~~v~sv~~~~~lvVIkT~pG~A~~va~~iD~~~~~eIlGTIAGDDTIlvi~~~~~~a~~l~~~ 160 (168)
T PRK03341 97 GELLVSADASANLAVLRTPPGAAQYLASAIDRAALPEVVGTIAGDDTVLVIARDPMTGAELAAR 160 (168)
T ss_pred HHHeEEEeeeCCEEEEEcCCChHHHHHHHHHhCCCCCeEEEeecCCEEEEEeCCHHHHHHHHHH
Confidence 33334445577788888888999999999887764322 68899999999987777653
Done!