Query 021054
Match_columns 318
No_of_seqs 151 out of 394
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 12:05:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021054.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021054hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ll2_A Glycogenin-1; protein-s 98.3 6.5E-06 2.2E-10 78.4 12.8 161 96-285 7-173 (333)
2 3u2u_A Glycogenin-1, GN-1, GN1 98.2 2.3E-05 7.9E-10 72.4 14.7 161 95-285 6-174 (263)
3 3tzt_A Glycosyl transferase fa 97.5 0.00053 1.8E-08 63.2 10.3 188 96-290 8-208 (276)
4 1g9r_A Glycosyl transferase; a 97.4 0.00063 2.2E-08 63.5 9.6 179 96-286 3-199 (311)
5 3ks6_A Glycerophosphoryl diest 75.2 21 0.00072 31.5 10.4 70 77-146 83-157 (250)
6 3l12_A Putative glycerophospho 55.1 1.2E+02 0.0041 27.3 12.4 69 77-145 124-204 (313)
7 1o7q_A N-acetyllactosaminide a 53.5 36 0.0012 31.5 7.4 176 94-284 50-246 (289)
8 2c0n_A A197; thermophil protei 48.8 12 0.0004 33.0 3.2 46 168-213 37-88 (203)
9 3bcv_A Putative glycosyltransf 40.8 1E+02 0.0035 25.5 8.1 101 94-212 8-119 (240)
10 2pz0_A Glycerophosphoryl diest 40.5 74 0.0025 27.8 7.4 69 78-146 98-169 (252)
11 1b4b_A Arginine repressor; cor 40.4 36 0.0012 24.4 4.3 59 82-140 2-66 (71)
12 1qg8_A Protein (spore coat pol 40.4 1.3E+02 0.0045 25.1 8.8 95 94-198 4-104 (255)
13 3no3_A Glycerophosphodiester p 38.3 97 0.0033 26.9 7.7 70 77-146 80-155 (238)
14 3ioh_A Histo-blood group ABO s 38.1 47 0.0016 30.8 5.7 104 84-198 47-163 (298)
15 1fo8_A Alpha-1,3-mannosyl-glyc 38.0 1.4E+02 0.0048 27.8 9.2 109 94-205 5-122 (343)
16 2o55_A Putative glycerophospho 34.9 91 0.0031 27.2 7.0 70 77-146 90-166 (258)
17 4ayl_A BOGT-metal-independent 33.7 32 0.0011 31.1 3.7 172 96-284 5-200 (246)
18 2p5m_A Arginine repressor; alp 30.4 51 0.0018 24.3 3.8 59 82-140 10-78 (83)
19 3ch0_A Glycerophosphodiester p 29.2 1.9E+02 0.0066 25.1 8.2 69 78-146 113-193 (272)
20 2l0l_A Oxidoreductase THAT cat 28.9 7.4 0.00025 23.1 -0.9 25 32-58 1-25 (27)
21 2zfz_A Arginine repressor; DNA 28.4 42 0.0014 24.5 3.0 58 82-139 6-73 (79)
22 2l9u_A Receptor tyrosine-prote 28.4 37 0.0013 21.5 2.2 23 39-61 9-32 (40)
23 3qvq_A Phosphodiesterase OLEI0 28.3 2.9E+02 0.0099 23.8 12.4 70 77-146 95-168 (252)
24 2oog_A Glycerophosphoryl diest 23.8 1.5E+02 0.005 26.4 6.4 68 78-145 119-194 (287)
25 1wek_A Hypothetical protein TT 21.4 1.3E+02 0.0045 26.1 5.4 55 78-134 141-206 (217)
26 1t35_A Hypothetical protein YV 20.6 1.5E+02 0.0052 25.1 5.6 55 79-134 108-172 (191)
27 3l9k_W Dynein intermediate cha 20.0 45 0.0015 21.4 1.5 29 159-187 9-37 (38)
No 1
>1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A*
Probab=98.28 E-value=6.5e-06 Score=78.37 Aligned_cols=161 Identities=12% Similarity=0.084 Sum_probs=96.1
Q ss_pred EEEEeCcchHHHHHHHHHHhhhcCCCccEEEEEeC---HHHHHHHhccCCCceEEcCCCCCCc--cccccCchhHHHHHh
Q 021054 96 IVCAVSQPYLPFLNNWLISISRQKHQDQVLVIAED---YATLYKVNGRWPGHAVLVPPAPDSQ--TAHKFGSQGFFNFTS 170 (318)
Q Consensus 96 IVt~~N~~y~~~l~Nwl~sl~~~gi~~~vlVvAlD---~~a~~~c~~~~pg~~v~~~~~~d~~--~~~~~gs~~f~~m~~ 170 (318)
|+..+|..|+.-+...+.|+++.+-...++|+..| ++..+.+++. ++.+......+.. .........+...++
T Consensus 7 vt~~~d~~Yl~~a~vl~~SL~~~~s~~~l~vlv~~~is~~~~~~L~~~--~~~v~~v~~l~~~~~~~~~~~~~~~~~~t~ 84 (333)
T 1ll2_A 7 VTLTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIV--FDEVITVDILDSGDSAHLTLMKRPELGVTL 84 (333)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHTTCCSEEEEEECTTSCHHHHHHHHHH--CSEEEECCTTSTTSTTHHHHHHCGGGHHHH
T ss_pred EEEEeCHHHHHHHHHHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHHh--CCEEEEEeecCCcchhhcccccccchHHHH
Confidence 44457899999999999999987654455555443 5556666665 3333322211111 000000011123456
Q ss_pred hhHHHHHHHHHcCC-eEEEeecceeeecCCcCCcCCCCceeeecccccccCCCCCCCCCCCCCCCCcccceeEEEEecCh
Q 021054 171 RRPCHLLHILELGY-NVMYNDVDMVWLKDPFPYLQGDHDVYFTDDMAAVKPLDHSHDLPPPGKKGRTYICSCMIYLRPTD 249 (318)
Q Consensus 171 ~K~~~l~~lL~lGy-~VL~sDvDVVWLrdP~~~~~~~aDv~~s~D~~~~~~~d~~~~~p~~g~~g~~~~NtGf~y~R~T~ 249 (318)
.|..+.. + ..| .|+|.|+|++.++|+-+.|.-+ .+....|. |+ ..++|+|+|.++++.
T Consensus 85 ~Kl~i~~-l--~~ydrvlYLDaD~lv~~di~eLf~~~-~~aAv~d~---------------~~--~~~fNsGvmlin~~~ 143 (333)
T 1ll2_A 85 TKLHCWS-L--TQYSKCVFMDADTLVLANIDDLFERE-ELSAAPDP---------------GW--PDCFNSGVFVYQPSV 143 (333)
T ss_dssp HHGGGGG-C--TTCSEEEEECTTEEECSCCGGGGGSC-SSEEEECS---------------SS--TTSEEEEEEEECCCH
T ss_pred HHHHHhH-h--cCCCeEEEEeCCEEeccCHHHHhCCC-ceeEEecC---------------CC--CcceeeeEEEEeCCH
Confidence 6665543 2 355 5999999999999998877654 23322221 11 137999999999974
Q ss_pred HHHHHHHHHHHHHHcCCcccCCCCCChHHHHHHHhh
Q 021054 250 GAKLVMKKWIEELQAEPWSKAKKANDQPAFNWALNK 285 (318)
Q Consensus 250 ~t~~f~~~W~~~l~~~p~~~~~~~~DQ~afN~ll~~ 285 (318)
. ..+++.+.+.+.. .-...||.++|.++.+
T Consensus 144 ~---~~~~l~~~~~~~~---~~~~~DQ~~LN~~f~~ 173 (333)
T 1ll2_A 144 E---TYNQLLHVASEQG---SFDGGDQGLLNTFFNS 173 (333)
T ss_dssp H---HHHHHHHHHHHTC---CTTSSHHHHHHHHTTT
T ss_pred H---HHHHHHHHHHhcC---CCCCCCHHHHHHHHHh
Confidence 3 3455555544321 1256899999998875
No 2
>3u2u_A Glycogenin-1, GN-1, GN1; structural genomics, structural genomics consortium, SGC, transferase, glycosyltransferase, glycogen biosynthesis; HET: GLC UDP; 1.45A {Homo sapiens} SCOP: c.68.1.14 PDB: 3t7n_A* 3t7o_A* 3t7m_A* 3u2v_A* 3u2x_A* 3u2t_A 3rmv_A* 3rmw_A* 3u2w_A* 3qvb_A* 3q4s_A* 1zct_A* 3v8y_A 3v8z_A* 3usr_A 3v90_A 3v91_A* 3usq_A
Probab=98.22 E-value=2.3e-05 Score=72.42 Aligned_cols=161 Identities=12% Similarity=0.104 Sum_probs=96.8
Q ss_pred EEEE-EeCcchHHHHHHHHHHhhhcCCCccEEEEE---eCHHHHHHHhccCCCceEEcCCCCCCcc---ccccCchhHHH
Q 021054 95 IIVC-AVSQPYLPFLNNWLISISRQKHQDQVLVIA---EDYATLYKVNGRWPGHAVLVPPAPDSQT---AHKFGSQGFFN 167 (318)
Q Consensus 95 VIVt-~~N~~y~~~l~Nwl~sl~~~gi~~~vlVvA---lD~~a~~~c~~~~pg~~v~~~~~~d~~~---~~~~gs~~f~~ 167 (318)
..|| .+|..|..-+...+.|+++.+-...++|+. .+++..+.+++. ++.+...+..+... ....+.+.+ .
T Consensus 6 AyvTl~td~~Yl~ga~vL~~SL~~~~s~~~lvvLvt~~vs~~~~~~L~~~--~~~vi~V~~l~~~~~~~~~~~~rp~~-~ 82 (263)
T 3u2u_A 6 AFVTLTTNDAYAKGALVLGSSLKQHRTTRRLVVLATPQVSDSMRKVLETV--FDEVIMVDVLDSGDSAHLTLMKRPEL-G 82 (263)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTTCCSEEEEEECTTSCHHHHHHHHHH--SSEEEECCCCCCCCHHHHHHTTCTTG-G
T ss_pred EEEEEEECHHHHHHHHHHHHHHHHhCCCCCEEEEecCCCCHHHHHHHHHc--CCeEEEeeecCCcchhhhhhhcCcch-h
Confidence 3344 468899999999999999987544444443 345666677766 45444322222111 001122222 3
Q ss_pred HHhhhHHHHHHHHHcCC-eEEEeecceeeecCCcCCcCCCCceeeecccccccCCCCCCCCCCCCCCCCcccceeEEEEe
Q 021054 168 FTSRRPCHLLHILELGY-NVMYNDVDMVWLKDPFPYLQGDHDVYFTDDMAAVKPLDHSHDLPPPGKKGRTYICSCMIYLR 246 (318)
Q Consensus 168 m~~~K~~~l~~lL~lGy-~VL~sDvDVVWLrdP~~~~~~~aDv~~s~D~~~~~~~d~~~~~p~~g~~g~~~~NtGf~y~R 246 (318)
.++.|..+-. ++ .| .|++.|+|++.++|.-+.|..+ .+....|. |+ ..++|+|++.+.
T Consensus 83 ~~~~kl~~~~-l~--~~~~vlylD~D~~v~~~~~~Lf~~~-~~aA~~d~---------------~~--~~~fNsGv~li~ 141 (263)
T 3u2u_A 83 VTLTKLHCWS-LT--QYSKCVFMDADTLVLANIDDLFDRE-ELSAAPDP---------------GW--PDCFNSGVFVYQ 141 (263)
T ss_dssp GGGGGGGGGG-CT--TCSEEEEECTTEEECSCCGGGGGSC-SSEEEECT---------------TS--TTSEEEEEEEEC
T ss_pred HHhHHHHhcc-cc--CcceEEEEcCCEeeccCHHHHhCCC-cceEeccC---------------CC--CccccCeEEEEc
Confidence 4566665443 22 46 5999999999999987777654 23333331 11 248999999999
Q ss_pred cChHHHHHHHHHHHHHHcCCcccCCCCCChHHHHHHHhh
Q 021054 247 PTDGAKLVMKKWIEELQAEPWSKAKKANDQPAFNWALNK 285 (318)
Q Consensus 247 ~T~~t~~f~~~W~~~l~~~p~~~~~~~~DQ~afN~ll~~ 285 (318)
++... .++..+.+.+.. .....||.++|.++.+
T Consensus 142 p~~~~---~~~l~~~~~~~~---~~~~~DQd~LN~~f~~ 174 (263)
T 3u2u_A 142 PSVET---YNQLLHLASEQG---SFDGGDQGILNTFFSS 174 (263)
T ss_dssp CCHHH---HHHHHHHHHHHC---CTTSSHHHHHHHHTTT
T ss_pred ccHHH---HHHHHHHHHhcC---CCCcccHHHHHHHhcc
Confidence 97543 344444333211 1356899999999975
No 3
>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} SCOP: c.68.1.0
Probab=97.48 E-value=0.00053 Score=63.24 Aligned_cols=188 Identities=12% Similarity=0.066 Sum_probs=88.8
Q ss_pred EEEEeCcchHHHHHHHHHHhhhcCCCc--cEEEEEeC--HHHHHHHhcc--CCCceE--EcCCCCCCccccccCchhHHH
Q 021054 96 IVCAVSQPYLPFLNNWLISISRQKHQD--QVLVIAED--YATLYKVNGR--WPGHAV--LVPPAPDSQTAHKFGSQGFFN 167 (318)
Q Consensus 96 IVt~~N~~y~~~l~Nwl~sl~~~gi~~--~vlVvAlD--~~a~~~c~~~--~pg~~v--~~~~~~d~~~~~~~gs~~f~~ 167 (318)
|+.++|..|...+..-+.|+.+.+-.. ++.|++.+ ++..+.+.+. ..++.+ +..+....... -.+..|..
T Consensus 8 I~~~~d~~Y~~~~~v~i~Sl~~~~~~~~~~~~il~~~is~~~~~~L~~~~~~~~~~i~~~~~~~~~~~~~--~~~~~~s~ 85 (276)
T 3tzt_A 8 LLLTLDENYIPQMKVLMTSIYINNPGRIFDVYLIHSRISEDKLKDLGEDLKKFSYTLYPIRATDDLFSFA--KVTDRYPK 85 (276)
T ss_dssp EEEECCGGGHHHHHHHHHHHHHHSTTCCEEEEEEESCCCHHHHHHHHHHHHTTTCEEEEEECC---------------CH
T ss_pred EEEEeCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCHHHHHHHHHHHHHcCCEEEEEEeCHHHHhcC--ccccccCH
Confidence 678999999999999999987654312 34344433 4544545443 224432 11111001000 00111222
Q ss_pred HHhhhHHHHHHHHHcCC-eEEEeecceeeecCCcCCcCC---CCceeeecccccccCCCCCCCCCCCCCCCCcccceeEE
Q 021054 168 FTSRRPCHLLHILELGY-NVMYNDVDMVWLKDPFPYLQG---DHDVYFTDDMAAVKPLDHSHDLPPPGKKGRTYICSCMI 243 (318)
Q Consensus 168 m~~~K~~~l~~lL~lGy-~VL~sDvDVVWLrdP~~~~~~---~aDv~~s~D~~~~~~~d~~~~~p~~g~~g~~~~NtGf~ 243 (318)
.+..|.. +-+++...+ .|++.|+|++.++|.-+.+.- +.-+....|....+...... ....+. ...++|+|++
T Consensus 86 ~~~~rl~-~~~l~p~~~~kvlylD~D~iv~~di~~L~~~dl~~~~~aav~d~~~~~~~~~~~-~~~l~~-~~~yfNsGV~ 162 (276)
T 3tzt_A 86 EMYYRLL-AGEFLPENLGEILYLDPDMLVINPLDDLLRTDISDYILAAASHTGKTDMANNVN-RIRLGT-DTDYYNSGLL 162 (276)
T ss_dssp HHHHHHT-HHHHSCTTCCEEEEECSSEEECSCSHHHHTCCCTTSSEEEEEC----------------------CEEEEEE
T ss_pred HHHHHHH-HHHHcccccCeEEEEeCCeeecCCHHHHhhcCCCCCeEEEEEecccchHHHHHH-HhcCCC-CCCeEEeeEE
Confidence 3333432 233454455 699999999999998776653 23344444543211000000 000111 1268999999
Q ss_pred EEecChHH-HHHHHHHHHHHHcCCcccCCCCCChHHHHHHHhhcCCCc
Q 021054 244 YLRPTDGA-KLVMKKWIEELQAEPWSKAKKANDQPAFNWALNKTAGQV 290 (318)
Q Consensus 244 y~R~T~~t-~~f~~~W~~~l~~~p~~~~~~~~DQ~afN~ll~~~~~~~ 290 (318)
.+-.+.-- ..+.+++.+.+.+.+ ..-...||+++|.++++....+
T Consensus 163 linl~~~R~~~~~~~~~~~~~~~~--~~~~~~DQd~LN~~f~~~~~~L 208 (276)
T 3tzt_A 163 LINLKRAREEIDPDEIFSFVEDNH--MNLLLPDQDILNAMYGDRIYPL 208 (276)
T ss_dssp EEEHHHHHHHCCHHHHHHHHHHC----------CHHHHHHHGGGEEEE
T ss_pred EEEHHHHHhhhHHHHHHHHHHhcc--ccccCCChhHHHHHHhCCEEEC
Confidence 99776411 123333444443331 0124689999999998644333
No 4
>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A*
Probab=97.38 E-value=0.00063 Score=63.53 Aligned_cols=179 Identities=15% Similarity=0.134 Sum_probs=93.2
Q ss_pred EEEEeCcchHHHHHHHHHHh-hh-cCCCccEEEEEeC--HHHHHHHhccCC--Cce--EEcCCCCCCccccccCchhHHH
Q 021054 96 IVCAVSQPYLPFLNNWLISI-SR-QKHQDQVLVIAED--YATLYKVNGRWP--GHA--VLVPPAPDSQTAHKFGSQGFFN 167 (318)
Q Consensus 96 IVt~~N~~y~~~l~Nwl~sl-~~-~gi~~~vlVvAlD--~~a~~~c~~~~p--g~~--v~~~~~~d~~~~~~~gs~~f~~ 167 (318)
|+.++|..|...+...+.|+ .+ .+..-++.|++.| ++..+.+++... ++. ....+.......... ...+..
T Consensus 3 I~~~~d~~Y~~~~~vli~Sl~l~~~~~~~~f~il~~~ls~~~~~~L~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~s~ 81 (311)
T 1g9r_A 3 IVFAADDNYAAYLCVAAKSVEAAHPDTEIRFHVLDAGISEANRAAVAANLRGGGGNIRFIDVNPEDFAGFPLN-IRHISI 81 (311)
T ss_dssp EEEEECGGGHHHHHHHHHHHHHTCTTSCCEEEEEESSCCHHHHHHHHHHSGGGTTTEEEEECCGGGGTTSCCC-CTTCCG
T ss_pred EEEECCHhHHHHHHHHHHHHHHHcCCCCceEEEEECCCCHHHHHHHHHHHHHcCCEEEEEEcCHHHHhcCccc-cccCCH
Confidence 66779999999999999999 33 3222245555654 566565654311 232 221111000000000 011112
Q ss_pred HHhhhHHHHHHHHHcCC-eEEEeecceeeecCCcCCcCC---CCceeeecccccccCCC--CCCCCCCCCCCCCccccee
Q 021054 168 FTSRRPCHLLHILELGY-NVMYNDVDMVWLKDPFPYLQG---DHDVYFTDDMAAVKPLD--HSHDLPPPGKKGRTYICSC 241 (318)
Q Consensus 168 m~~~K~~~l~~lL~lGy-~VL~sDvDVVWLrdP~~~~~~---~aDv~~s~D~~~~~~~d--~~~~~p~~g~~g~~~~NtG 241 (318)
.+..|..+ -+++. .+ .|++.|+|++.++|.-+.+.- +.-+....|........ ...+.+ .+..++|+|
T Consensus 82 ~~y~Rl~l-~~ll~-~~~kvlyLD~D~iv~~di~eL~~~~l~~~~~aav~d~~~~~~~~~~~~~~~~----~~~~yfNsG 155 (311)
T 1g9r_A 82 TTYARLKL-GEYIA-DCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGASIDLFVERQEGYKQKIGMA----DGEYYFNAG 155 (311)
T ss_dssp GGGGGGGH-HHHCC-SCSCEEEECSSEEECSCCHHHHTCCCTTCSEEEEECHHHHTSTTHHHHTTCC----TTSCCEEEE
T ss_pred HHHHHHHH-HHHhh-hcCEEEEEcCCeEeccCHHHHhccCCCCcEEEEEeccchhhhHHHHHhcCCC----CCCceEeee
Confidence 34455543 44453 55 599999999999998766653 33344444532110000 000011 123589999
Q ss_pred EEEEecCh----HHHHHHHHHHHHHHcCCcccCCCCCChHHHHHHHhhc
Q 021054 242 MIYLRPTD----GAKLVMKKWIEELQAEPWSKAKKANDQPAFNWALNKT 286 (318)
Q Consensus 242 f~y~R~T~----~t~~f~~~W~~~l~~~p~~~~~~~~DQ~afN~ll~~~ 286 (318)
+|.+..+. ....-+.+|.+.... .....||.++|.++.+.
T Consensus 156 v~linl~~~r~~~~~~~~~~~~~~~~~-----~~~~~DQd~lN~~f~~~ 199 (311)
T 1g9r_A 156 VLLINLKKWRRHDIFKMSSEWVEQYKD-----VMQYQDQDILNGLFKGG 199 (311)
T ss_dssp EEEECHHHHTTSCHHHHHHHHHHHHTT-----TCSSHHHHHHHHHHTTS
T ss_pred eeeeeHHHHHhcchHHHHHHHHHhccC-----cCccCCcCHHHHHHcCC
Confidence 99998753 111223334433221 13578999999988753
No 5
>3ks6_A Glycerophosphoryl diester phosphodiesterase; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.80A {Agrobacterium tumefaciens str} PDB: 3ks5_A*
Probab=75.18 E-value=21 Score=31.47 Aligned_cols=70 Identities=10% Similarity=0.063 Sum_probs=50.6
Q ss_pred CCcchHHHHHHhhccCCe-EEEEEeCc----chHHHHHHHHHHhhhcCCCccEEEEEeCHHHHHHHhccCCCceE
Q 021054 77 WRDYTLSQAASFVAKNGT-IIVCAVSQ----PYLPFLNNWLISISRQKHQDQVLVIAEDYATLYKVNGRWPGHAV 146 (318)
Q Consensus 77 ~~~~~L~ell~~~A~~~t-VIVt~~N~----~y~~~l~Nwl~sl~~~gi~~~vlVvAlD~~a~~~c~~~~pg~~v 146 (318)
.+-++|+|+++.....+. +.+=.=.. .+..+...-+.-+++.+..+++++...|.++++.+++..|....
T Consensus 83 ~~iptL~evl~~~~~~~~~l~iEiK~~~~~~~~~~~~~~v~~~l~~~~~~~~v~~~SF~~~~l~~~~~~~p~~~~ 157 (250)
T 3ks6_A 83 SHPMTLEELCALYVDSHVNFRCEIKPGVDGLPYEGFVALVIAGLERHSMLERTTFSSFLLASMDELWKATTRPRL 157 (250)
T ss_dssp CCCEEHHHHHHHHTTCSCEEEEEECCCTTSCCCTTHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCCSCEE
T ss_pred ccCcCHHHHHHHHhccCcEEEEEeCCCcccCcchHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHCCCCcE
Confidence 367899999998874443 33333221 23456666777778888888999999999999999888776553
No 6
>3l12_A Putative glycerophosphoryl diester phosphodiester; struct genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.60A {Silicibacter pomeroyi}
Probab=55.07 E-value=1.2e+02 Score=27.34 Aligned_cols=69 Identities=14% Similarity=0.157 Sum_probs=50.1
Q ss_pred CCcchHHHHHHhhccC---C-eEEEEEeCcch--------HHHHHHHHHHhhhcCCCccEEEEEeCHHHHHHHhccCCCc
Q 021054 77 WRDYTLSQAASFVAKN---G-TIIVCAVSQPY--------LPFLNNWLISISRQKHQDQVLVIAEDYATLYKVNGRWPGH 144 (318)
Q Consensus 77 ~~~~~L~ell~~~A~~---~-tVIVt~~N~~y--------~~~l~Nwl~sl~~~gi~~~vlVvAlD~~a~~~c~~~~pg~ 144 (318)
-.-++|+|+++.+... + .+.+=.=+... ..+.+.-+.-+++.+..+++++...|.++++.+++..|..
T Consensus 124 ~~iptL~evl~~~~~~~~~~~~l~IEiK~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~v~i~SF~~~~l~~~~~~~p~~ 203 (313)
T 3l12_A 124 IHVPRLGELLDLCAGYGDQAPYLLLELKSDPALMHDHAARAEMVAAVLADVRRYRMEPRTVMHSFDWALLGECRRQAPDL 203 (313)
T ss_dssp CCCCBHHHHHHHHHTTGGGCCEEEEEECCCGGGTTCHHHHHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCTTS
T ss_pred CcCCCHHHHHHHHHhcCCCCceEEEEEccCCccccccccHHHHHHHHHHHHHHcCCCCCEEEEcCCHHHHHHHHHHCCCC
Confidence 3578999999988752 3 33333333322 3567777777888888889999999999999999887765
Q ss_pred e
Q 021054 145 A 145 (318)
Q Consensus 145 ~ 145 (318)
.
T Consensus 204 ~ 204 (313)
T 3l12_A 204 P 204 (313)
T ss_dssp C
T ss_pred c
Confidence 4
No 7
>1o7q_A N-acetyllactosaminide alpha-1,3- galactosyltransferase; 3-galactosyltransferase-UDP complex, glycosyltransferase, glycoprotein, transmembrane; HET: GAL NAG UDP; 1.3A {Bos taurus} SCOP: c.68.1.9 PDB: 1gwv_A* 1gx0_A* 1gww_A* 1k4v_A* 1gx4_A* 2jco_A 1g8o_A* 1fg5_N* 1g93_A* 2wgz_A* 1o7o_A* 2vs4_A* 2jck_A* 2jcl_A 2vfz_A* 2vs3_A* 1vzu_A* 1vzx_A* 1vzt_A* 2jcj_A* ...
Probab=53.53 E-value=36 Score=31.45 Aligned_cols=176 Identities=12% Similarity=0.113 Sum_probs=93.9
Q ss_pred eEEEEEeCcchH-HHHHHHHHHhhh---cCCCccEEEEEeCHHHHHHHhccCCCc--eEEcCCCCCCccccccCchhHHH
Q 021054 94 TIIVCAVSQPYL-PFLNNWLISISR---QKHQDQVLVIAEDYATLYKVNGRWPGH--AVLVPPAPDSQTAHKFGSQGFFN 167 (318)
Q Consensus 94 tVIVt~~N~~y~-~~l~Nwl~sl~~---~gi~~~vlVvAlD~~a~~~c~~~~pg~--~v~~~~~~d~~~~~~~gs~~f~~ 167 (318)
.=++.++-..|. .|++.|++|.++ .|..-++.|.+-+.+..-.. .+.|+. .++.-. ....|..
T Consensus 50 IGl~vfa~GkY~~~fl~~Fl~SAEk~Fm~g~~v~YYVFTD~~~~~p~v-~l~~~r~~~V~~i~----------~~~~W~d 118 (289)
T 1o7q_A 50 VGLTVFAVGRYIEHYLEEFLTSANKHFMVGHPVIFYIMVDDVSRMPLI-ELGPLRSFKVFKIK----------PEKRWQD 118 (289)
T ss_dssp EEEEEEECTTHHHHHHHHHHHHHHHHBSTTSCEEEEEEESCGGGCCCC-CCCTTEEEEEEECC----------CCSSHHH
T ss_pred EEEEEEEecccHHHHHHHHHHHHHHhccCCCeEEEEEEeCChhhCCcc-ccCCCCeEEEEEec----------cccCCch
Confidence 335667777899 899999999988 57777888888777653211 122332 222211 1123666
Q ss_pred HHhhhHHHHHHHHH----cCCe-EEEeecceeeecCCcCCcCCCCceeee-ccccccc-----CCCC---CCCCCCCCCC
Q 021054 168 FTSRRPCHLLHILE----LGYN-VMYNDVDMVWLKDPFPYLQGDHDVYFT-DDMAAVK-----PLDH---SHDLPPPGKK 233 (318)
Q Consensus 168 m~~~K~~~l~~lL~----lGy~-VL~sDvDVVWLrdP~~~~~~~aDv~~s-~D~~~~~-----~~d~---~~~~p~~g~~ 233 (318)
.+.+|.+.+.+..+ ..+| +.+.|+|+++..+=-....+ |.+.+ .-.+.+. |++. +.-.=+.| +
T Consensus 119 ~sm~Rm~~i~~~~~~~~~~evDYLf~~dvd~~F~~~vG~E~Lg--~lv~~lHp~~y~~~~~~fpYERrp~S~AyIp~~-e 195 (289)
T 1o7q_A 119 ISMMRMKTIGEHIVAHIQHEVDFLFCMDVDQVFQDKFGVETLG--ESVAQLQAWWYKADPNDFTYERRKESAAYIPFG-E 195 (289)
T ss_dssp HHHHHHHHHHHHHHHTHHHHCSEEEEECSSEEECSCBCGGGCS--SEEEEECTTTTTSCGGGSCCCCCTTSTTCCCTT-C
T ss_pred hHHHHHHHHHHHHHHHHhhcCCEEEEeeCCcEeeccCCHHHHH--HHHHccCHHHhCCCCCCCCCCCCcCceeeecCC-C
Confidence 77778888877652 2455 56779999996532222222 23332 1111111 1111 11111112 2
Q ss_pred CCcccceeEEEEecChHHHHHHHHHHHHHHcCCccc-CCCCCChHHHHHHHh
Q 021054 234 GRTYICSCMIYLRPTDGAKLVMKKWIEELQAEPWSK-AKKANDQPAFNWALN 284 (318)
Q Consensus 234 g~~~~NtGf~y~R~T~~t~~f~~~W~~~l~~~p~~~-~~~~~DQ~afN~ll~ 284 (318)
|..+..+|++= =.+....++.+...+.+...--.. .+.-+|---+|+.+-
T Consensus 196 GdfYY~Ga~fG-Gt~~~vl~l~~~c~~~i~~D~~n~I~A~wHDESHLNKYf~ 246 (289)
T 1o7q_A 196 GDFYYHAAIFG-GTPTQVLNITQECFKGILKDKKNDIEAQWHDESHLNKYFL 246 (289)
T ss_dssp CSCCEEEEEEE-ECHHHHHHHHHHHHHHHHHHHHTTCCCTTTHHHHHHHHHH
T ss_pred CCEEEEceeeC-CcHHHHHHHHHHHHHHHHHHHhCCeEEEecchhhhhHHHh
Confidence 33344444433 445566677776666553310000 234578899999853
No 8
>2c0n_A A197; thermophil protein, thermophilic virus, STIV, sulfolobus turreted ICOS virus; 1.86A {Sulfolobus turreted icosahedral virus}
Probab=48.78 E-value=12 Score=32.96 Aligned_cols=46 Identities=24% Similarity=0.261 Sum_probs=32.9
Q ss_pred HHhhhHHHHHHHHH-cCCe-EEEeecceeeecCCcC----CcCCCCceeeec
Q 021054 168 FTSRRPCHLLHILE-LGYN-VMYNDVDMVWLKDPFP----YLQGDHDVYFTD 213 (318)
Q Consensus 168 m~~~K~~~l~~lL~-lGy~-VL~sDvDVVWLrdP~~----~~~~~aDv~~s~ 213 (318)
++..|...+.++|+ .||+ +++.|+|||=+.=+-. .+..++||+..+
T Consensus 37 I~raRN~lv~~Fl~~~~~dhllfIDAD~~~I~FdPe~V~rLl~~g~DVV~Gs 88 (203)
T 2c0n_A 37 VAVQREIALDMFLEMKDYDTLAFLDEDVVPIEIDFQKVEAKFNEGYDVVCGY 88 (203)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEECTTEEEEECCHHHHHHHHHHTCSEEEEE
T ss_pred hHHHHHHHHHHHHhcCCCCEEEEEeCCCCccccCHHHHHHHHhCCCCEEEEE
Confidence 45578999999887 6986 7999999655543322 234589999865
No 9
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}
Probab=40.80 E-value=1e+02 Score=25.51 Aligned_cols=101 Identities=17% Similarity=0.165 Sum_probs=52.4
Q ss_pred eEEEEEeCcchHHHHHHHHHHhhhcCCCccEEEEEeC---HHHHHHHhc---cCCCceEEcCCCCCCccccccCchhHHH
Q 021054 94 TIIVCAVSQPYLPFLNNWLISISRQKHQDQVLVIAED---YATLYKVNG---RWPGHAVLVPPAPDSQTAHKFGSQGFFN 167 (318)
Q Consensus 94 tVIVt~~N~~y~~~l~Nwl~sl~~~gi~~~vlVvAlD---~~a~~~c~~---~~pg~~v~~~~~~d~~~~~~~gs~~f~~ 167 (318)
+||+.+-|.. +.+...++|+.+....+.=+|+..| +++.+.+++ ..|.+.++..+..+.
T Consensus 8 sViIp~yn~~--~~l~~~l~Sl~~q~~~~~eiIvvDd~S~d~t~~~~~~~~~~~~~i~~i~~~n~G~------------- 72 (240)
T 3bcv_A 8 SVIVPIYNVE--KYLDQCVQALLAQTLSDIEIILIDDESPDNCPKICDDYAAQYPNIKVIHKKNAGL------------- 72 (240)
T ss_dssp EEEEEESSCT--TTHHHHHHHHHTCSSSSEEEEEEECCCSSSHHHHHHHHHHHCSSEEEEECCCCCH-------------
T ss_pred EEEEecCCCH--HHHHHHHHHHHhCcCCCeEEEEEECCCCcCHHHHHHHHHhhCCCEEEEECCCCCh-------------
Confidence 4666666765 6677888888776543322333333 344444443 345555554321111
Q ss_pred HHhhhHHHHHHHHHcCCeEEEeecceeeecCCcCCcC----C-CCceeee
Q 021054 168 FTSRRPCHLLHILELGYNVMYNDVDMVWLKDPFPYLQ----G-DHDVYFT 212 (318)
Q Consensus 168 m~~~K~~~l~~lL~lGy~VL~sDvDVVWLrdP~~~~~----~-~aDv~~s 212 (318)
...+..-+.. ..|==+++.|.|.+|-.|=+..+. . ++|+++.
T Consensus 73 -~~a~N~g~~~--a~g~~i~~lD~Dd~~~~~~l~~l~~~~~~~~~~~v~~ 119 (240)
T 3bcv_A 73 -GMACNSGLDV--ATGEYVAFCDSDDYVDSDMYMTMYNVAQKYTCDAVFT 119 (240)
T ss_dssp -HHHHHHHHHH--CCSSEEEECCTTCCCCTTHHHHHHHHHHHHTCSEEEC
T ss_pred -HHHHHHHHHH--cCCCEEEEECCCCcCCHHHHHHHHHHHHhcCCCEEEE
Confidence 0112222221 257679999999988443333331 2 5677654
No 10
>2pz0_A Glycerophosphoryl diester phosphodiesterase; glycerophosphodiester phosphodiesterase, T. tengcongensis; 1.91A {Thermoanaerobacter tengcongensis}
Probab=40.54 E-value=74 Score=27.76 Aligned_cols=69 Identities=14% Similarity=0.145 Sum_probs=48.1
Q ss_pred CcchHHHHHHhhccCCe-EEEEEeCc--chHHHHHHHHHHhhhcCCCccEEEEEeCHHHHHHHhccCCCceE
Q 021054 78 RDYTLSQAASFVAKNGT-IIVCAVSQ--PYLPFLNNWLISISRQKHQDQVLVIAEDYATLYKVNGRWPGHAV 146 (318)
Q Consensus 78 ~~~~L~ell~~~A~~~t-VIVt~~N~--~y~~~l~Nwl~sl~~~gi~~~vlVvAlD~~a~~~c~~~~pg~~v 146 (318)
.-++|+|+|+.+...+. +.+=.-.. .+..+...-+.-+++.+..+++++...|.++++.+++..|...+
T Consensus 98 ~iPtL~evL~~~~~~~~~l~iEiK~~~~~~~~~~~~v~~~l~~~~~~~~vii~SF~~~~l~~~~~~~p~~~~ 169 (252)
T 2pz0_A 98 RIPTLYEVFELIGDKDFLVNIEIKSGIVLYPGIEEKLIKAIKEYNFEERVIISSFNHYSLRDVKKMAPHLKI 169 (252)
T ss_dssp CCCBHHHHHHHHTTSCCEEEEEECCSSCCCTTHHHHHHHHHHHTTCTTTEEEEESBHHHHHHHHHHCTTSEE
T ss_pred cCCCHHHHHHHhhhcCCeEEEEeCCCCcccHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHCCCCCE
Confidence 45799999998765343 33332222 23345566666677778778899999999999999887776543
No 11
>1b4b_A Arginine repressor; core, oligomerization domain, helix TUR; HET: ARG; 2.20A {Geobacillus stearothermophilus} SCOP: d.74.2.1
Probab=40.41 E-value=36 Score=24.40 Aligned_cols=59 Identities=15% Similarity=0.142 Sum_probs=44.3
Q ss_pred HHHHHHhhccCCeEEEEEeCcchHHHHHHHHHHhhhcCC------CccEEEEEeCHHHHHHHhcc
Q 021054 82 LSQAASFVAKNGTIIVCAVSQPYLPFLNNWLISISRQKH------QDQVLVIAEDYATLYKVNGR 140 (318)
Q Consensus 82 L~ell~~~A~~~tVIVt~~N~~y~~~l~Nwl~sl~~~gi------~~~vlVvAlD~~a~~~c~~~ 140 (318)
+++.+-++...+..+|.-+--+++..+.+.+.+....++ .|-++|++.|++..+.+.++
T Consensus 2 ~~~~v~si~~~~n~vVikT~pG~A~~va~~iD~~~~~eI~GTIAGDDTIlvi~r~~~~a~~l~~~ 66 (71)
T 1b4b_A 2 LVDVFIKLDGTGNLLVLRTLPGNAHAIGVLLDNLDWDEIVGTICGDDTCLIICRTPKDAKKVSNQ 66 (71)
T ss_dssp HHHHEEEEEEETTEEEEEESTTCHHHHHHHHHHHCCTTEEEEEECSSEEEEEESSHHHHHHHHHH
T ss_pred hhHhEEEEEecCCEEEEEeCCCcHHHHHHHHHhCCCCCeEEEEeeCCEEEEEECCHHHHHHHHHH
Confidence 344455555566677777888899999999998766333 68999999999998887653
No 12
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=40.37 E-value=1.3e+02 Score=25.09 Aligned_cols=95 Identities=15% Similarity=0.161 Sum_probs=48.3
Q ss_pred eEEEEEeCcchHHHHHHHHHHhhhcCCCccEEEEEe---CHHHHHHHhcc--CCCceEEcCCCCCCc-cccccCchhHHH
Q 021054 94 TIIVCAVSQPYLPFLNNWLISISRQKHQDQVLVIAE---DYATLYKVNGR--WPGHAVLVPPAPDSQ-TAHKFGSQGFFN 167 (318)
Q Consensus 94 tVIVt~~N~~y~~~l~Nwl~sl~~~gi~~~vlVvAl---D~~a~~~c~~~--~pg~~v~~~~~~d~~-~~~~~gs~~f~~ 167 (318)
+||+.+-|.+ +.+...+.|+.+....+.=+||.- ++++.+.+++. .+++.++..+..+.. .....|
T Consensus 4 SViIp~yn~~--~~l~~~l~Sl~~q~~~~~eiivvDd~S~d~t~~~~~~~~~~~~i~~i~~~~~~~~~~~~n~G------ 75 (255)
T 1qg8_A 4 SVIMTSYNKS--DYVAKSISSILSQTFSDFELFIMDDNSNEETLNVIRPFLNDNRVRFYQSDISGVKERTEKTR------ 75 (255)
T ss_dssp EEEEEESSCT--TTHHHHHHHHHTCSCCCEEEEEEECSCCHHHHHHHGGGGGSTTEEEEECCCCSHHHHHSSCH------
T ss_pred EEEEEcCCCH--HHHHHHHHHHHhccCCceEEEEEECCCCchHHHHHHHHhhcCCEEEEecccccccccccccC------
Confidence 4677777775 677888889877655332233333 35566666654 344555443210000 000001
Q ss_pred HHhhhHHHHHHHHHcCCeEEEeecceeeecC
Q 021054 168 FTSRRPCHLLHILELGYNVMYNDVDMVWLKD 198 (318)
Q Consensus 168 m~~~K~~~l~~lL~lGy~VL~sDvDVVWLrd 198 (318)
....+...+.. ..|==+++.|.|.+|..|
T Consensus 76 ~~~a~N~gi~~--a~g~~i~~lD~Dd~~~~~ 104 (255)
T 1qg8_A 76 YAALINQAIEM--AEGEYITYATDDNIYMPD 104 (255)
T ss_dssp HHHHHHHHHHH--CCCSEEEEEETTEEECTT
T ss_pred HHHHHHHHHHH--cCCCEEEEeCCCCccChH
Confidence 01112222221 256668999999999443
No 13
>3no3_A Glycerophosphodiester phosphodiesterase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.89A {Parabacteroides distasonis} SCOP: c.1.18.0
Probab=38.31 E-value=97 Score=26.85 Aligned_cols=70 Identities=16% Similarity=-0.038 Sum_probs=51.2
Q ss_pred CCcchHHHHHHhhccC-C-eEEEEEeCcc----hHHHHHHHHHHhhhcCCCccEEEEEeCHHHHHHHhccCCCceE
Q 021054 77 WRDYTLSQAASFVAKN-G-TIIVCAVSQP----YLPFLNNWLISISRQKHQDQVLVIAEDYATLYKVNGRWPGHAV 146 (318)
Q Consensus 77 ~~~~~L~ell~~~A~~-~-tVIVt~~N~~----y~~~l~Nwl~sl~~~gi~~~vlVvAlD~~a~~~c~~~~pg~~v 146 (318)
..-++|+|+++.+... + .+.+=.=... +..+...-+.-+++.+..+++++...|.+++..+++..|...+
T Consensus 80 ~~iptL~evl~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~v~~~l~~~~~~~~v~~~Sf~~~~l~~~~~~~p~~~~ 155 (238)
T 3no3_A 80 EKLPTLEQYLKRAKKLKNIRLIFELKSHDTPERNRDAARLSVQMVKRMKLAKRTDYISFNMDACKEFIRLCPKSEV 155 (238)
T ss_dssp CBCCBHHHHHHHHHHCTTCEEEEEECCCSSHHHHHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCTTSCE
T ss_pred CcCCcHHHHHHHHhhcCCceEEEEeCCCCCcchhHHHHHHHHHHHHHcCCcCCEEEEECCHHHHHHHHHHCCCCeE
Confidence 4678999999988753 3 3444333332 2346666777788888888999999999999999988787554
No 14
>3ioh_A Histo-blood group ABO system transferase; GTA, cisab mutant, AA(Gly)B, rossman fold, unliganded, conformation, blood group antigen, glycoprotein; HET: GOL; 1.25A {Homo sapiens} SCOP: c.68.1.9 PDB: 3ioi_A* 3ioj_A* 3u0y_A* 3u0x_A* 1zhj_A* 2o1h_A* 2o1g_A* 3sx5_A* 3sx3_A* 2o1f_A 2rj6_A* 2rj5_A* 2rj7_A* 1zi4_A* 2y7a_A* 3sxb_A* 3sxa_A* 2riz_A 2rj0_A* 2rj1_A* ...
Probab=38.06 E-value=47 Score=30.79 Aligned_cols=104 Identities=20% Similarity=0.230 Sum_probs=63.0
Q ss_pred HHHHhhc-c-CCeE-EEEEeCcchHHHHHHHHHHhhh---cCCCccEEEEEeCHHHHHHHhccCCCc--eEEcCCCCCCc
Q 021054 84 QAASFVA-K-NGTI-IVCAVSQPYLPFLNNWLISISR---QKHQDQVLVIAEDYATLYKVNGRWPGH--AVLVPPAPDSQ 155 (318)
Q Consensus 84 ell~~~A-~-~~tV-IVt~~N~~y~~~l~Nwl~sl~~---~gi~~~vlVvAlD~~a~~~c~~~~pg~--~v~~~~~~d~~ 155 (318)
++|++.- + |=|| ++.++-..|..|++.|++|.++ .|..-++.|.+.+.+..-.. ++.|+. .++...
T Consensus 47 ~il~~~y~~~n~tIGl~vfA~GkY~~fl~~Fl~SAek~Fm~g~~V~YYVFTD~~~~vP~v-~l~~~r~~~V~~v~----- 120 (298)
T 3ioh_A 47 DILNEQFRLQNTTIGLTVFAIKKYVAFLKLFLETAEKHFMVGHRVHYYVFTDQPAAVPRV-TLGTGRQLSVLEVR----- 120 (298)
T ss_dssp HHHHHHHHHTTCEEEEEEEECGGGGGGHHHHHHHHHHHBSTTSEEEEEEEESCGGGSCCC-CCCTTEEEEEEECC-----
T ss_pred HHHHHHHHHhCCcEEEEEEEeCcHHHHHHHHHHhHHHhccCCceEEEEEEeCChhhCCcc-ccCCCCeEEEEEec-----
Confidence 3444433 3 3344 4566777788999999999988 57777888887776642211 122332 233211
Q ss_pred cccccCchhHHHHHhhhHHHHHHHHH----cCCe-EEEeecceeeecC
Q 021054 156 TAHKFGSQGFFNFTSRRPCHLLHILE----LGYN-VMYNDVDMVWLKD 198 (318)
Q Consensus 156 ~~~~~gs~~f~~m~~~K~~~l~~lL~----lGy~-VL~sDvDVVWLrd 198 (318)
....|...+.+|.+.+.+..+ .-+| +...|+|+++..+
T Consensus 121 -----~~~~Wqd~sm~Rm~~i~~~~~~~~~~EvDyLfc~dvd~~F~~~ 163 (298)
T 3ioh_A 121 -----AYKRWQDVSMRRMEMISDFCERRFLSEVDYLVCVDVDMEFRDH 163 (298)
T ss_dssp -----CCSSHHHHHHHHHHHHHHHHHHTHHHHCSEEEEEESSEEECSC
T ss_pred -----cccCCccccHHHHHHHHHHHHHHHhhcCCEEEEecCCCeeccC
Confidence 123455566678877776554 3345 5678999999543
No 15
>1fo8_A Alpha-1,3-mannosyl-glycoprotein beta-1,2-N- acetylglucosaminyltransferase; methylmercury derivative, N- acetylglucosaminyltransferase I; 1.40A {Oryctolagus cuniculus} SCOP: c.68.1.10 PDB: 1fo9_A 1foa_A* 2apc_A* 2am3_A* 2am4_A* 2am5_A*
Probab=38.05 E-value=1.4e+02 Score=27.84 Aligned_cols=109 Identities=14% Similarity=0.130 Sum_probs=62.7
Q ss_pred eEEEEEeCcchHHHHHHHHHHhhhcC--CCccEEEEEeCH---HHHHHHhccCCCceEE--cCCCCCCccccccCchhHH
Q 021054 94 TIIVCAVSQPYLPFLNNWLISISRQK--HQDQVLVIAEDY---ATLYKVNGRWPGHAVL--VPPAPDSQTAHKFGSQGFF 166 (318)
Q Consensus 94 tVIVt~~N~~y~~~l~Nwl~sl~~~g--i~~~vlVvAlD~---~a~~~c~~~~pg~~v~--~~~~~d~~~~~~~gs~~f~ 166 (318)
.|+|.+.|.. + ++.-++++.+.. .....+|++-|. ++.+.+++....+... .+.+.-...+...|..+|.
T Consensus 5 pViI~~yNRp--~-l~~~L~sL~~~~p~~~~~~iivsdDgs~~~~~~vi~~~~~~I~~~~~~d~~~~~~~~~N~g~~~y~ 81 (343)
T 1fo8_A 5 PILVIACDRS--T-VRRCLDKLLHYRPSAELFPIIVSQDCGHEETAQVIASYGSAVTHIRQPDLSNIAVQPDHRKFQGYY 81 (343)
T ss_dssp CEEEEESSCT--T-HHHHHHHHHHHCSCTTTSCEEEEECTTCHHHHHHHHTTGGGSEEEECSCCCCCCCCTTCGGGHHHH
T ss_pred cEEEEECCcH--H-HHHHHHHHHhcCCCcCCcEEEEEECCCCHHHHHHHHHcCCceEEEEcCCccccccchhhcCcccch
Confidence 5889999998 4 778888887764 223456667765 3444444321112111 1111101012223444566
Q ss_pred HHHhhhHHHHHHHHH--cCCeEEEeecceeeecCCcCCcCC
Q 021054 167 NFTSRRPCHLLHILE--LGYNVMYNDVDMVWLKDPFPYLQG 205 (318)
Q Consensus 167 ~m~~~K~~~l~~lL~--lGy~VL~sDvDVVWLrdP~~~~~~ 205 (318)
++...-...+..+.+ .+=-|++.|-|++.-.|-+.|+..
T Consensus 82 ~ia~h~~~al~~vf~~~~~~~vIiLEDDl~~spdF~~y~~~ 122 (343)
T 1fo8_A 82 KIARHYRWALGQIFHNFNYPAAVVVEDDLEVAPDFFEYFQA 122 (343)
T ss_dssp HHHHHHHHHHHHHHTTSCCSEEEEEETTEEECTTHHHHHHH
T ss_pred hHhHHHHHHHHHHHHhccCCEEEEEcCCCeECHHHHHHHHH
Confidence 555555555555555 455699999999997777877753
No 16
>2o55_A Putative glycerophosphodiester phosphodiesterase; beta barrel, structural genomics, protein structure initiati 2; 2.81A {Galdieria sulphuraria}
Probab=34.91 E-value=91 Score=27.20 Aligned_cols=70 Identities=9% Similarity=0.006 Sum_probs=49.2
Q ss_pred CCcchHHHHHHhhccC--Ce-EEEEEeCc----chHHHHHHHHHHhhhcCCCccEEEEEeCHHHHHHHhccCCCceE
Q 021054 77 WRDYTLSQAASFVAKN--GT-IIVCAVSQ----PYLPFLNNWLISISRQKHQDQVLVIAEDYATLYKVNGRWPGHAV 146 (318)
Q Consensus 77 ~~~~~L~ell~~~A~~--~t-VIVt~~N~----~y~~~l~Nwl~sl~~~gi~~~vlVvAlD~~a~~~c~~~~pg~~v 146 (318)
.+-++|+|+++.+... +. +.+=.-.. .+..+....+.-+++.+..+++++...|.+++..+++..|...+
T Consensus 90 ~~iptL~evl~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~v~~~l~~~~~~~~v~i~Sf~~~~l~~~~~~~p~~~~ 166 (258)
T 2o55_A 90 HTIPSLEELFVAIEEQKFNLKLNLELKGEEWKRKESGDHQRLLLLVEKYHMQERVDYCSFHHEALAHLKALCPDVKI 166 (258)
T ss_dssp CBCCBHHHHHHHHHHSCSCCEEEEEECCSSSSSTTSSHHHHHHHHHHTTTCGGGEEEEESSHHHHHHHHHHCTTCEE
T ss_pred CccCCHHHHHHHhhhhcCceEEEEEEccCCccccchHHHHHHHHHHHHcCCCCCEEEEeCCHHHHHHHHHHCCCCcE
Confidence 4678999999987653 43 33333222 12345666667777778878999999999999999887776543
No 17
>4ayl_A BOGT-metal-independent glycosyltransferase; histo-blood group enzyme; HET: EPE; 1.92A {Bacteroides ovatus} PDB: 4ayj_A*
Probab=33.72 E-value=32 Score=31.08 Aligned_cols=172 Identities=16% Similarity=0.159 Sum_probs=83.8
Q ss_pred EEEEeCcchHHHHHHHHHHhhh---cCCC--ccEEEEEeCHHHHHHHhccCCCceEEcCCCCCCccccccCchhHHHHHh
Q 021054 96 IVCAVSQPYLPFLNNWLISISR---QKHQ--DQVLVIAEDYATLYKVNGRWPGHAVLVPPAPDSQTAHKFGSQGFFNFTS 170 (318)
Q Consensus 96 IVt~~N~~y~~~l~Nwl~sl~~---~gi~--~~vlVvAlD~~a~~~c~~~~pg~~v~~~~~~d~~~~~~~gs~~f~~m~~ 170 (318)
++.++-..|..+++.|++|.++ .|.. -++.|.+-+.+...... . ..+.+... +...| ...+.
T Consensus 5 l~vfA~GkY~~fl~~Fl~SAek~Fm~g~~~~V~yYVFTD~~~~vp~~~-~-~~v~~~~~------~~~~W-----qd~sm 71 (246)
T 4ayl_A 5 ILYICTGKYDIFWKDFYLSAERYFMQDQSFIIEYYVFTDSPKLYDEEN-N-KHIHRIKQ------KNLGW-----PDNTL 71 (246)
T ss_dssp EEEECCGGGGGGHHHHHHHHHHHBSCSTTSEEEEEEEESCSCCTTTTT-C-TTEEEEEC------CCCCT-----THHHH
T ss_pred EEEEEeCcHHHHHHHHHHhHHHhccCCCccceEEEEEeCChhhCCcCC-C-ceEEEEeC------CcCCC-----cccch
Confidence 4556677788999999999888 5776 78888877766532111 1 12222211 11223 23344
Q ss_pred hhHHHHHHH---HHcCCe-EEEeecceeeecCCc--CCc-C-CCCceeee-cccccccCCCCCCCCC---------CCCC
Q 021054 171 RRPCHLLHI---LELGYN-VMYNDVDMVWLKDPF--PYL-Q-GDHDVYFT-DDMAAVKPLDHSHDLP---------PPGK 232 (318)
Q Consensus 171 ~K~~~l~~l---L~lGy~-VL~sDvDVVWLrdP~--~~~-~-~~aDv~~s-~D~~~~~~~d~~~~~p---------~~g~ 232 (318)
+|.+.+.+. +..-+| +...|+|+++. |++ +.+ . .+.+.+.+ .-.+...+.+. ...+ +.|
T Consensus 72 ~Rm~~i~~~~~~~~~evDyLf~~dvd~~F~-~~vG~E~L~p~~~~~lva~lHp~~y~~~~~~-fpYERrp~S~AyIp~~- 148 (246)
T 4ayl_A 72 KRFHIFLRIKEQLERETDYLFFFNANLLFT-SPIGKEILPPSDSNGLLGTMHPGFYNKPNSE-FTYERRDASTAYIPEG- 148 (246)
T ss_dssp THHHHHHTTHHHHHHHCSEEEEECTTEEEC-SCBCGGGSCCTTSCCEEEEBCGGGC------------------------
T ss_pred HHHHHHHHHHHHHHhhCCEEEEEeCCceee-ccCCHHHcccCCCCCEEEEechhhhCCCccc-CcccCCccccccccCC-
Confidence 455544433 222245 56789999995 443 333 2 23444544 22222111110 0111 111
Q ss_pred CCCcccceeEEEEecChHHHHHHHHHHHHHHcCCccc-CCCCCChHHHHHHHh
Q 021054 233 KGRTYICSCMIYLRPTDGAKLVMKKWIEELQAEPWSK-AKKANDQPAFNWALN 284 (318)
Q Consensus 233 ~g~~~~NtGf~y~R~T~~t~~f~~~W~~~l~~~p~~~-~~~~~DQ~afN~ll~ 284 (318)
+|..+..+|++= -.+....++.+.....+...--.. .+.-+|---+|+-+-
T Consensus 149 eGdfYY~ga~fG-G~~~~vl~Lt~~c~~~i~~D~~n~I~A~whDESHLNKYfl 200 (246)
T 4ayl_A 149 EGRYYYAGGLSG-GCTKAYLKLCTTICSWVDRDATNHIIPIWHDESLINKYFL 200 (246)
T ss_dssp --CCCBCSSEEE-EEHHHHHHHHHHHHHHHHHHHTTCSSCSCCHHHHHHHHHH
T ss_pred CCCeEEeeeecC-CcHHHHHHHHHHHHHHHHHHHhCCceEeccchhHhHHHHH
Confidence 233344444433 334556666666666553311001 224578889999875
No 18
>2p5m_A Arginine repressor; alpha-beta, L-arginine binding domain, DNA binding protein; HET: ARG; 1.95A {Bacillus subtilis} SCOP: d.74.2.1
Probab=30.35 E-value=51 Score=24.29 Aligned_cols=59 Identities=15% Similarity=0.170 Sum_probs=43.5
Q ss_pred HHHHHHh----hccCCeEEEEEeCcchHHHHHHHHHHhhhcCC------CccEEEEEeCHHHHHHHhcc
Q 021054 82 LSQAASF----VAKNGTIIVCAVSQPYLPFLNNWLISISRQKH------QDQVLVIAEDYATLYKVNGR 140 (318)
Q Consensus 82 L~ell~~----~A~~~tVIVt~~N~~y~~~l~Nwl~sl~~~gi------~~~vlVvAlD~~a~~~c~~~ 140 (318)
|+..++. +...+..+|.-+--+++..+.+.+.+...-++ .|-++|++.|++..+.+.+.
T Consensus 10 l~~~~~~~v~si~~~~n~vVikT~PG~A~~vA~~iD~~~~~eIlGTIAGDDTIlvi~r~~~~a~~l~~~ 78 (83)
T 2p5m_A 10 LKRALMDAFVKIDSASHMIVLKTMPGNAQAIGALMDNLDWDEMMGTICGDDTILIICRTPEDTEGVKNR 78 (83)
T ss_dssp HHHHHHHHEEEEEEETTEEEEEESTTCHHHHHHHHHTTTCTTCCEEEECSSEEEEECSSHHHHHHHHHH
T ss_pred HHHHHHHHEEEEEecCCEEEEEeCCCcHHHHHHHHHhCCCCCeEEEEecCCEEEEEECCHHHHHHHHHH
Confidence 4445544 33456777777888889999999998766433 68999999999998887653
No 19
>3ch0_A Glycerophosphodiester phosphodiesterase; YP_677622.1, glycerophosphoryl diester phosphodiesterase, ST genomics; HET: MSE CIT GOL; 1.50A {Cytophaga hutchinsonii atcc 33406}
Probab=29.20 E-value=1.9e+02 Score=25.13 Aligned_cols=69 Identities=12% Similarity=0.045 Sum_probs=49.0
Q ss_pred CcchHHHHHHhhcc-C-Ce-EEEEEeCcc---------hHHHHHHHHHHhhhcCCCccEEEEEeCHHHHHHHhccCCCce
Q 021054 78 RDYTLSQAASFVAK-N-GT-IIVCAVSQP---------YLPFLNNWLISISRQKHQDQVLVIAEDYATLYKVNGRWPGHA 145 (318)
Q Consensus 78 ~~~~L~ell~~~A~-~-~t-VIVt~~N~~---------y~~~l~Nwl~sl~~~gi~~~vlVvAlD~~a~~~c~~~~pg~~ 145 (318)
+-++|+|+|+.+.. + +. +.+=.=+.. ...+....+.-+++.+..+++++...|.++++.+++..|...
T Consensus 113 ~iptL~evl~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~v~i~Sf~~~~l~~~~~~~p~~~ 192 (272)
T 3ch0_A 113 VKPLFRELIETAEKLSAKIQYNGEIKSTVEGDNIDHPNIALFCDLVVAEIKKAHITDRFTLQSFDVRALEYMHSQYPDIK 192 (272)
T ss_dssp CCCBHHHHHHHHHHHCSSCEEEEEECCCGGGBTTTBCCHHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCTTSE
T ss_pred CCcCHHHHHHHHHHhCCCceEEEEECCCcCcccccCccHHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHHHHHHCCCCc
Confidence 57899999998764 1 33 333332222 134666777777888887899999999999999998777654
Q ss_pred E
Q 021054 146 V 146 (318)
Q Consensus 146 v 146 (318)
+
T Consensus 193 ~ 193 (272)
T 3ch0_A 193 L 193 (272)
T ss_dssp E
T ss_pred E
Confidence 3
No 20
>2l0l_A Oxidoreductase THAT catalyzes reoxidation of DSBA disulfide isomerase I; DSBB, membrane protein, organic solvent, folding; NMR {Escherichia coli BW2952} PDB: 2l0m_A
Probab=28.90 E-value=7.4 Score=23.12 Aligned_cols=25 Identities=20% Similarity=0.371 Sum_probs=15.3
Q ss_pred CchhhhhhHHHHHHHHHHHHHHHhhcC
Q 021054 32 RPMLLVLNRTTLLVLLSLLVVLGVILP 58 (318)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 (318)
+|+ |++-|..+ +.++++.++|.+.|
T Consensus 1 ~pL-CI~QR~a~-~~i~~~~li~~~~P 25 (27)
T 2l0l_A 1 KKL-SIYERVAL-FGVLGAALIGAIAP 25 (27)
T ss_dssp CCC-SSSSHHHH-HHHSSTTTTTTTCC
T ss_pred CCc-hHHHHHHH-HHHHHHHHHHHhcC
Confidence 456 99999554 55555555665444
No 21
>2zfz_A Arginine repressor; DNA binding protein, core, oligomeriza domain, alpha/beta topology, structural genomics; HET: ARG; 1.85A {Mycobacterium tuberculosis} PDB: 3bue_A 3cag_A*
Probab=28.44 E-value=42 Score=24.55 Aligned_cols=58 Identities=16% Similarity=0.204 Sum_probs=42.7
Q ss_pred HHHHHHh----hccCCeEEEEEeCcchHHHHHHHHHHhhhcCC------CccEEEEEeCHHHHHHHhc
Q 021054 82 LSQAASF----VAKNGTIIVCAVSQPYLPFLNNWLISISRQKH------QDQVLVIAEDYATLYKVNG 139 (318)
Q Consensus 82 L~ell~~----~A~~~tVIVt~~N~~y~~~l~Nwl~sl~~~gi------~~~vlVvAlD~~a~~~c~~ 139 (318)
|+.+++. +...+..+|.-+--+++..+.+.+.+....++ .|-++|++.|++..+.+.+
T Consensus 6 l~~~~~~~v~si~~~~n~vVikT~PG~A~~vA~~iD~~~~~eIlGTIAGDDTIlvi~r~~~~a~~l~~ 73 (79)
T 2zfz_A 6 MARLLGELLVSTDDSGNLAVLRTPPGAAHYLASAIDRAALPQVVGTIAGDDTILVVAREPTTGAQLAG 73 (79)
T ss_dssp HHHHHHHHCCEEEEETTEEEEECSTTCHHHHHHHHHHHCCTTEEEEEECSSEEEEEECTTCCHHHHHH
T ss_pred HHHHHHHHEEEEeecCCEEEEEeCCCcHHHHHHHHHhCCCCCeEEEEecCCEEEEEECCHHHHHHHHH
Confidence 4444443 33466777778888999999999998766433 6889999999888777654
No 22
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=28.39 E-value=37 Score=21.48 Aligned_cols=23 Identities=30% Similarity=0.641 Sum_probs=13.7
Q ss_pred hHHHHHHHHHHHHHH-HhhcCCCC
Q 021054 39 NRTTLLVLLSLLVVL-GVILPWTG 61 (318)
Q Consensus 39 ~~~~~~~~~~~~~~~-~~~~~~~~ 61 (318)
..++.+-|+..|.+| |+|++|-|
T Consensus 9 alt~i~gl~vif~~lg~tflywrg 32 (40)
T 2l9u_A 9 ALTVIAGLVVIFMMLGGTFLYWRG 32 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCceeEEEcc
Confidence 333333356666666 78888853
No 23
>3qvq_A Phosphodiesterase OLEI02445; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta hydrolase, hydrolase; HET: MSE G3P; 1.60A {Oleispira antarctica}
Probab=28.27 E-value=2.9e+02 Score=23.84 Aligned_cols=70 Identities=16% Similarity=0.085 Sum_probs=45.0
Q ss_pred CCcchHHHHHHhhccCC-eEEEEEeCc--chHHHHHHHHHHhhhcCCC-ccEEEEEeCHHHHHHHhccCCCceE
Q 021054 77 WRDYTLSQAASFVAKNG-TIIVCAVSQ--PYLPFLNNWLISISRQKHQ-DQVLVIAEDYATLYKVNGRWPGHAV 146 (318)
Q Consensus 77 ~~~~~L~ell~~~A~~~-tVIVt~~N~--~y~~~l~Nwl~sl~~~gi~-~~vlVvAlD~~a~~~c~~~~pg~~v 146 (318)
.+-++|+|+++.+...+ .+.+=.=.. ....+.+.-..-+++.+.. +++++...|.++++.+++..|...+
T Consensus 95 ~~iptL~evl~~~~~~~~~l~iEiK~~~~~~~~~~~~v~~~l~~~~~~~~~vii~SF~~~~l~~~~~~~p~~~~ 168 (252)
T 3qvq_A 95 ETIPTLLEAIEVISQYGMGLNLELKPCEGLEEETIAASVEVLKQHWPQDLPLLFSSFNYFALVSAKALWPEIAR 168 (252)
T ss_dssp CCCCBHHHHHHHHHHTTCEEEEEECCCTTCHHHHHHHHHHHHHHHSCTTSCEEEEESCHHHHHHHHHHCTTSCE
T ss_pred CcCcCHHHHHHHHhccCcEEEEEecCCCCccHHHHHHHHHHHHHhCcccCCEEEEeCCHHHHHHHHHHCCCCcE
Confidence 35789999999887434 343333322 1223444444445555542 5799999999999999988776543
No 24
>2oog_A Glycerophosphoryl diester phosphodiesterase; phosphatase, ST genomics, protein structure initiative, PSI; 2.20A {Staphylococcus aureus subsp} PDB: 2p76_A
Probab=23.77 E-value=1.5e+02 Score=26.36 Aligned_cols=68 Identities=15% Similarity=0.129 Sum_probs=46.5
Q ss_pred CcchHHHHHHhhccCCeEEEEEeC-cchHHHHHHHHHHhhhcCC-------CccEEEEEeCHHHHHHHhccCCCce
Q 021054 78 RDYTLSQAASFVAKNGTIIVCAVS-QPYLPFLNNWLISISRQKH-------QDQVLVIAEDYATLYKVNGRWPGHA 145 (318)
Q Consensus 78 ~~~~L~ell~~~A~~~tVIVt~~N-~~y~~~l~Nwl~sl~~~gi-------~~~vlVvAlD~~a~~~c~~~~pg~~ 145 (318)
.-++|+|+|+....+-.+.+=.=. ..+..+....+.-+++.+. .+++++...|.+++..+++..|...
T Consensus 119 ~iPtL~evL~~~~~~~~l~IEiK~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~vii~SF~~~~l~~~~~~~p~~~ 194 (287)
T 2oog_A 119 KVPTLDEILERYGPNANYYIETKSPDVYPGMEEQLLASLKKHHLLNNNKLKNGHVMIQSFSDESLKKIHRQNKHVP 194 (287)
T ss_dssp CCCBHHHHHHHHCTTSCEEEECCCTTTSTTHHHHHHHHHHHTTCSSHHHHHTTSEEEEESCHHHHHHHHHHCTTSC
T ss_pred cCCCHHHHHHhhCcCceEEEEECCCCCcchHHHHHHHHHHHcCCcccccCCCCCEEEEeCCHHHHHHHHHhCCCCc
Confidence 567999999987543233332221 2233455666667777776 6889999999999999988777654
No 25
>1wek_A Hypothetical protein TT1465; rossman fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: c.129.1.1
Probab=21.36 E-value=1.3e+02 Score=26.14 Aligned_cols=55 Identities=16% Similarity=0.221 Sum_probs=36.6
Q ss_pred CcchHHHHHHhhc-------cCCeEEEEEeCcchHHHHHHHHHHhhhcCC----CccEEEEEeCHHHH
Q 021054 78 RDYTLSQAASFVA-------KNGTIIVCAVSQPYLPFLNNWLISISRQKH----QDQVLVIAEDYATL 134 (318)
Q Consensus 78 ~~~~L~ell~~~A-------~~~tVIVt~~N~~y~~~l~Nwl~sl~~~gi----~~~vlVvAlD~~a~ 134 (318)
.-=||+|+..-.+ .++.|++. |.+|++=+..|+.++...|. ....++++.|.+..
T Consensus 141 G~GTL~El~e~lt~~qlg~~~~kPvvll--~~~~w~~l~~~l~~~~~~Gfi~~~~~~~~~~~~~~~e~ 206 (217)
T 1wek_A 141 GFGTLDELSEVLVLLQTEKVHRFPVFLL--DRGYWEGLVRWLAFLRDQKAVGPEDLQLFRLTDEPEEV 206 (217)
T ss_dssp CHHHHHHHHHHHHHHHTTSSCCCCEEEE--CHHHHHHHHHHHHHHHHTTSSCTTGGGGSEEESCHHHH
T ss_pred CCcHHHHHHHHHHHHhhCCCCCCCEEEe--CcccchhHHHHHHHHHHCCCCCHHHcCeEEEeCCHHHH
Confidence 3458999887765 24677765 55688888899988777664 12344556665543
No 26
>1t35_A Hypothetical protein YVDD, putative lysine decarboxylase; structural genomics target, NYSGXRC, PSI, protein structure initiative; 2.72A {Bacillus subtilis} SCOP: c.129.1.1
Probab=20.65 E-value=1.5e+02 Score=25.06 Aligned_cols=55 Identities=9% Similarity=0.005 Sum_probs=36.2
Q ss_pred cchHHHHHHhhc------cCCeEEEEEeCcchHHHHHHHHHHhhhcCCC----ccEEEEEeCHHHH
Q 021054 79 DYTLSQAASFVA------KNGTIIVCAVSQPYLPFLNNWLISISRQKHQ----DQVLVIAEDYATL 134 (318)
Q Consensus 79 ~~~L~ell~~~A------~~~tVIVt~~N~~y~~~l~Nwl~sl~~~gi~----~~vlVvAlD~~a~ 134 (318)
-=||+|+.+-.+ .++.|++.-. .+|++=+.+|+.++...|.. .+.+.++.|.+..
T Consensus 108 ~GTl~El~e~lt~~q~g~~~kPvvll~~-~g~~~~l~~~l~~~~~~Gfi~~~~~~~~~~~~~~~e~ 172 (191)
T 1t35_A 108 FGTYEELFEVLCWAQIGIHQKPIGLYNV-NGYFEPMMKMVKYSIQEGFSNESHLKLIHSSSRPDEL 172 (191)
T ss_dssp HHHHHHHHHHHHTTSCSSCCCCEEEECG-GGTTHHHHHHHHHHHHTTSSCTTHHHHEEEESSHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCCCCEEEecC-CcccchHHHHHHHHHHCCCCCHHHcCeEEEeCCHHHH
Confidence 448999988775 3667776633 26777777898887776642 2345667776554
No 27
>3l9k_W Dynein intermediate chain, cytosolic; LC7, light chain 7, KM23, RO hydrolase, alternative splicing, lysosome, membrane; 3.00A {Drosophila melanogaster}
Probab=20.03 E-value=45 Score=21.43 Aligned_cols=29 Identities=17% Similarity=0.156 Sum_probs=25.0
Q ss_pred ccCchhHHHHHhhhHHHHHHHHHcCCeEE
Q 021054 159 KFGSQGFFNFTSRRPCHLLHILELGYNVM 187 (318)
Q Consensus 159 ~~gs~~f~~m~~~K~~~l~~lL~lGy~VL 187 (318)
...|.+|....-+..+++.+.|.-.||++
T Consensus 9 I~~S~~F~~F~~rsskviERAL~e~yDi~ 37 (38)
T 3l9k_W 9 IILSENFQRFVVRAGRVIERALSENVDIY 37 (38)
T ss_dssp HHTSHHHHHHHHHHHHHHHHHHHHSSCTT
T ss_pred HhcCHHHHHHHHHHHHHHHHHHccccccc
Confidence 45678999999999999999999888864
Done!