BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021056
(318 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2JIJ|A Chain A, Crystal Structure Of The Apo Form Of Chlamydomonas
Reinhardtii Prolyl-4 Hydroxylase Type I
pdb|2JIJ|B Chain B, Crystal Structure Of The Apo Form Of Chlamydomonas
Reinhardtii Prolyl-4 Hydroxylase Type I
pdb|2JIJ|C Chain C, Crystal Structure Of The Apo Form Of Chlamydomonas
Reinhardtii Prolyl-4 Hydroxylase Type I
Length = 233
Score = 266 bits (680), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 121/207 (58%), Positives = 159/207 (76%), Gaps = 3/207 (1%)
Query: 52 RVTQLSWNPRAFIYKGFLSDEECDHLIDLAKDKLETSMVADNESGKSIASEVRTSSGMFL 111
V LSW+PRAF+ K FLSDEECD++++ A+ K+ S V DNESGKS+ SE+RTS+G +
Sbjct: 21 EVVHLSWSPRAFLLKNFLSDEECDYIVEKARPKMVKSSVVDNESGKSVDSEIRTSTGTWF 80
Query: 112 SKAQDEIVASIEARIAAWTFLPPENGEAMQILHYEHGQKYEPHFDFFRDKMNQ--QLGGH 169
+K +D +++ IE R+A T +P EN E +Q+LHY GQKYEPH+D+F D +N + GG
Sbjct: 81 AKGEDSVISKIEKRVAQVTMIPLENHEGLQVLHYHDGQKYEPHYDYFHDPVNAGPEHGGQ 140
Query: 170 RIATVLMYLSHVEKGGETVFPNSEVSQSRDGNWSECARRGYAVKPMKGDALLFFSLHPDA 229
R+ T+LMYL+ VE+GGETV PN+E + DG WSECA+RG AVKP+KGDAL+F+SL PD
Sbjct: 141 RVVTMLMYLTTVEEGGETVLPNAEQKVTGDG-WSECAKRGLAVKPIKGDALMFYSLKPDG 199
Query: 230 STDSTSLHGSCPVIEGEKWSATKWIHV 256
S D SLHGSCP ++G+KWSATKWIHV
Sbjct: 200 SNDPASLHGSCPTLKGDKWSATKWIHV 226
>pdb|3GZE|A Chain A, Algal Prolyl 4-Hydroxylase Complexed With Zinc And
(Ser-Pro)5 Peptide Substrate
pdb|3GZE|B Chain B, Algal Prolyl 4-Hydroxylase Complexed With Zinc And
(Ser-Pro)5 Peptide Substrate
pdb|3GZE|C Chain C, Algal Prolyl 4-Hydroxylase Complexed With Zinc And
(Ser-Pro)5 Peptide Substrate
pdb|3GZE|D Chain D, Algal Prolyl 4-Hydroxylase Complexed With Zinc And
(Ser-Pro)5 Peptide Substrate
Length = 225
Score = 266 bits (680), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 121/207 (58%), Positives = 159/207 (76%), Gaps = 3/207 (1%)
Query: 52 RVTQLSWNPRAFIYKGFLSDEECDHLIDLAKDKLETSMVADNESGKSIASEVRTSSGMFL 111
V LSW+PRAF+ K FLSDEECD++++ A+ K+ S V DNESGKS+ SE+RTS+G +
Sbjct: 13 EVVHLSWSPRAFLLKNFLSDEECDYIVEKARPKMVKSSVVDNESGKSVDSEIRTSTGTWF 72
Query: 112 SKAQDEIVASIEARIAAWTFLPPENGEAMQILHYEHGQKYEPHFDFFRDKMNQ--QLGGH 169
+K +D +++ IE R+A T +P EN E +Q+LHY GQKYEPH+D+F D +N + GG
Sbjct: 73 AKGEDSVISKIEKRVAQVTMIPLENHEGLQVLHYHDGQKYEPHYDYFHDPVNAGPEHGGQ 132
Query: 170 RIATVLMYLSHVEKGGETVFPNSEVSQSRDGNWSECARRGYAVKPMKGDALLFFSLHPDA 229
R+ T+LMYL+ VE+GGETV PN+E + DG WSECA+RG AVKP+KGDAL+F+SL PD
Sbjct: 133 RVVTMLMYLTTVEEGGETVLPNAEQKVTGDG-WSECAKRGLAVKPIKGDALMFYSLKPDG 191
Query: 230 STDSTSLHGSCPVIEGEKWSATKWIHV 256
S D SLHGSCP ++G+KWSATKWIHV
Sbjct: 192 SNDPASLHGSCPTLKGDKWSATKWIHV 218
>pdb|2JIG|A Chain A, Crystal Structure Of Chlamydomonas Reinhardtii Prolyl-4
Hydroxylase Type I Complexed With Zinc And Pyridine-2,4-
Dicarboxylate
pdb|2JIG|B Chain B, Crystal Structure Of Chlamydomonas Reinhardtii Prolyl-4
Hydroxylase Type I Complexed With Zinc And Pyridine-2,4-
Dicarboxylate
Length = 224
Score = 266 bits (679), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 121/207 (58%), Positives = 159/207 (76%), Gaps = 3/207 (1%)
Query: 52 RVTQLSWNPRAFIYKGFLSDEECDHLIDLAKDKLETSMVADNESGKSIASEVRTSSGMFL 111
V LSW+PRAF+ K FLSDEECD++++ A+ K+ S V DNESGKS+ SE+RTS+G +
Sbjct: 12 EVVHLSWSPRAFLLKNFLSDEECDYIVEKARPKMVKSSVVDNESGKSVDSEIRTSTGTWF 71
Query: 112 SKAQDEIVASIEARIAAWTFLPPENGEAMQILHYEHGQKYEPHFDFFRDKMNQ--QLGGH 169
+K +D +++ IE R+A T +P EN E +Q+LHY GQKYEPH+D+F D +N + GG
Sbjct: 72 AKGEDSVISKIEKRVAQVTMIPLENHEGLQVLHYHDGQKYEPHYDYFHDPVNAGPEHGGQ 131
Query: 170 RIATVLMYLSHVEKGGETVFPNSEVSQSRDGNWSECARRGYAVKPMKGDALLFFSLHPDA 229
R+ T+LMYL+ VE+GGETV PN+E + DG WSECA+RG AVKP+KGDAL+F+SL PD
Sbjct: 132 RVVTMLMYLTTVEEGGETVLPNAEQKVTGDG-WSECAKRGLAVKPIKGDALMFYSLKPDG 190
Query: 230 STDSTSLHGSCPVIEGEKWSATKWIHV 256
S D SLHGSCP ++G+KWSATKWIHV
Sbjct: 191 SNDPASLHGSCPTLKGDKWSATKWIHV 217
>pdb|2V4A|A Chain A, Crystal Structure Of The Semet-Labeled Prolyl-4
Hydroxylase (P4h) Type I From Green Algae Chlamydomonas
Reinhardtii.
pdb|2V4A|B Chain B, Crystal Structure Of The Semet-Labeled Prolyl-4
Hydroxylase (P4h) Type I From Green Algae Chlamydomonas
Reinhardtii.
pdb|2V4A|C Chain C, Crystal Structure Of The Semet-Labeled Prolyl-4
Hydroxylase (P4h) Type I From Green Algae Chlamydomonas
Reinhardtii.
pdb|2V4A|D Chain D, Crystal Structure Of The Semet-Labeled Prolyl-4
Hydroxylase (P4h) Type I From Green Algae Chlamydomonas
Reinhardtii
Length = 233
Score = 259 bits (662), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 120/207 (57%), Positives = 155/207 (74%), Gaps = 3/207 (1%)
Query: 52 RVTQLSWNPRAFIYKGFLSDEECDHLIDLAKDKLETSMVADNESGKSIASEVRTSSGMFL 111
V LSW+PRAF+ K FLSDEECD++++ A+ K S V DNESGKS+ SE+RTS+G +
Sbjct: 21 EVVHLSWSPRAFLLKNFLSDEECDYIVEKARPKXVKSSVVDNESGKSVDSEIRTSTGTWF 80
Query: 112 SKAQDEIVASIEARIAAWTFLPPENGEAMQILHYEHGQKYEPHFDFFRDKMNQ--QLGGH 169
+K +D +++ IE R+A T +P EN E +Q+LHY GQKYEPH+D+F D +N + GG
Sbjct: 81 AKGEDSVISKIEKRVAQVTXIPLENHEGLQVLHYHDGQKYEPHYDYFHDPVNAGPEHGGQ 140
Query: 170 RIATVLMYLSHVEKGGETVFPNSEVSQSRDGNWSECARRGYAVKPMKGDALLFFSLHPDA 229
R+ T L YL+ VE+GGETV PN+E + DG WSECA+RG AVKP+KGDAL F+SL PD
Sbjct: 141 RVVTXLXYLTTVEEGGETVLPNAEQKVTGDG-WSECAKRGLAVKPIKGDALXFYSLKPDG 199
Query: 230 STDSTSLHGSCPVIEGEKWSATKWIHV 256
S D SLHGSCP ++G+KWSATKWIHV
Sbjct: 200 SNDPASLHGSCPTLKGDKWSATKWIHV 226
>pdb|3ITQ|A Chain A, Crystal Structure Of A Prolyl 4-Hydroxylase From Bacillus
Anthracis
pdb|3ITQ|B Chain B, Crystal Structure Of A Prolyl 4-Hydroxylase From Bacillus
Anthracis
Length = 216
Score = 136 bits (343), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 75/195 (38%), Positives = 111/195 (56%), Gaps = 23/195 (11%)
Query: 60 PRAFIYKGFLSDEECDHLIDLAKDKLETSMVADNESGKSIASEVRTSSGMFLSKAQDEIV 119
P + LSDEECD LI+L+K KL S V + +++RTSSG FL +E+
Sbjct: 39 PLIVVLGNVLSDEECDELIELSKSKLARSKVGSSRD----VNDIRTSSGAFLD--DNELT 92
Query: 120 ASIEARIAAWTFLPPENGEAMQILHYEHGQKYEPHFDFFRDKMNQQLGGHRIATVLMYLS 179
A IE RI++ +P +GE + IL+YE Q+Y+ H+D+F + ++ +RI+T++ YL+
Sbjct: 93 AKIEKRISSIXNVPASHGEGLHILNYEVDQQYKAHYDYFAEH-SRSAANNRISTLVXYLN 151
Query: 180 HVEKGGETVFPNSEVSQSRDGNWSECARRGYAVKPMKGDALLFFSLHPDASTDSTSLHGS 239
VE+GGET FP +S V P KG A+ F + D S + +LHG
Sbjct: 152 DVEEGGETFFPKLNLS----------------VHPRKGXAVYFEYFYQDQSLNELTLHGG 195
Query: 240 CPVIEGEKWSATKWI 254
PV +GEKW AT+W+
Sbjct: 196 APVTKGEKWIATQWV 210
>pdb|1YCD|A Chain A, Crystal Structure Of Yeast Fsh1/yhr049w, A Member Of The
Serine Hydrolase Family
pdb|1YCD|B Chain B, Crystal Structure Of Yeast Fsh1/yhr049w, A Member Of The
Serine Hydrolase Family
Length = 243
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 109 MFLSKAQDEIVASIEARIAAWTFLPPENGEAMQILHYEH 147
+F+ A D+ V S+ ++ +L +NG ++L YEH
Sbjct: 176 IFIYGASDQAVPSVRSKYLYDIYLKAQNGNKEKVLAYEH 214
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,007,135
Number of Sequences: 62578
Number of extensions: 336437
Number of successful extensions: 753
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 731
Number of HSP's gapped (non-prelim): 12
length of query: 318
length of database: 14,973,337
effective HSP length: 99
effective length of query: 219
effective length of database: 8,778,115
effective search space: 1922407185
effective search space used: 1922407185
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)