BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021056
(318 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P54001|P4HA1_RAT Prolyl 4-hydroxylase subunit alpha-1 OS=Rattus norvegicus GN=P4ha1
PE=2 SV=2
Length = 534
Score = 129 bits (324), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 77/209 (36%), Positives = 109/209 (52%), Gaps = 22/209 (10%)
Query: 60 PRAFIYKGFLSDEECDHLIDLAKDKLETSMVADNESGKSIASEVRTSSGMFLSKAQDEIV 119
PR + +SD E + + DLAK +L + V D E+GK ++ R S +LS +D +V
Sbjct: 335 PRIIRFHDIISDAEIEIVKDLAKPRLSRATVHDPETGKLTTAQYRVSKSAWLSGYEDPVV 394
Query: 120 ASIEARIAAWTFLPPENGEAMQILHYEHGQKYEPHFDFFR----DKMNQQLGGHRIATVL 175
+ I RI T L E +Q+ +Y G +YEPHFDF R D + G+RIAT L
Sbjct: 395 SRINMRIQDLTGLDVSTAEELQVANYGVGGQYEPHFDFARKDEPDAFRELGTGNRIATWL 454
Query: 176 MYLSHVEKGGETVFPNSEVSQSRDGNWSECARRGYAVKPMKGDALLFFSLHPDASTDSTS 235
Y+S V GG TVFP EV G +V P KG A+ +++L D ++
Sbjct: 455 FYMSDVSAGGATVFP--EV--------------GASVWPKKGTAVFWYNLFASGEGDYST 498
Query: 236 LHGSCPVIEGEKWSATKWIHVRN--FDKP 262
H +CPV+ G KW + KW+H R F +P
Sbjct: 499 RHAACPVLVGNKWVSNKWLHERGQEFRRP 527
>sp|P16924|P4HA1_CHICK Prolyl 4-hydroxylase subunit alpha-1 OS=Gallus gallus GN=P4HA1 PE=1
SV=1
Length = 516
Score = 129 bits (323), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 77/209 (36%), Positives = 109/209 (52%), Gaps = 22/209 (10%)
Query: 60 PRAFIYKGFLSDEECDHLIDLAKDKLETSMVADNESGKSIASEVRTSSGMFLSKAQDEIV 119
PR + +SDEE + + +LAK +L + V D E+GK + R S +LS + +V
Sbjct: 317 PRIVRFLDIISDEEIETVKELAKPRLSRATVHDPETGKLTTAHYRVSKSAWLSGYESPVV 376
Query: 120 ASIEARIAAWTFLPPENGEAMQILHYEHGQKYEPHFDFFR----DKMNQQLGGHRIATVL 175
+ I RI T L E +Q+ +Y G +YEPHFDF R D + G+RIAT L
Sbjct: 377 SRINTRIQDLTGLDVSTAEELQVANYGVGGQYEPHFDFGRKDEPDAFKELGTGNRIATWL 436
Query: 176 MYLSHVEKGGETVFPNSEVSQSRDGNWSECARRGYAVKPMKGDALLFFSLHPDASTDSTS 235
Y+S V GG TVFP EV G +V P KG A+ +++L P D ++
Sbjct: 437 FYMSDVSAGGATVFP--EV--------------GASVWPKKGTAVFWYNLFPSGEGDYST 480
Query: 236 LHGSCPVIEGEKWSATKWIHVR--NFDKP 262
H +CPV+ G KW + KW+H R F +P
Sbjct: 481 RHAACPVLVGNKWVSNKWLHERGQEFRRP 509
>sp|Q10576|P4HA1_CAEEL Prolyl 4-hydroxylase subunit alpha-1 OS=Caenorhabditis elegans
GN=dpy-18 PE=1 SV=2
Length = 559
Score = 123 bits (309), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 73/222 (32%), Positives = 116/222 (52%), Gaps = 22/222 (9%)
Query: 47 TFDPSRVTQLSWNPRAFIYKGFLSDEECDHLIDLAKDKLETSMVADNESGKSIASEVRTS 106
+ P +V +NP A ++K +SD+E + +LAK KL + V D+ +GK + + R S
Sbjct: 315 VYAPIKVEIKRFNPLAVLFKDVISDDEVAAIQELAKPKLARATVHDSVTGKLVTATYRIS 374
Query: 107 SGMFLSKAQDEIVASIEARIAAWTFLPPENGEAMQILHYEHGQKYEPHFDFFR---DKMN 163
+L + + ++V ++ RI T L E E +QI +Y G Y+PHFD + K
Sbjct: 375 KSAWLKEWEGDVVETVNKRIGYMTNLEMETAEELQIANYGIGGHYDPHFDHAKKEESKSF 434
Query: 164 QQLG-GHRIATVLMYLSHVEKGGETVFPNSEVSQSRDGNWSECARRGYAVKPMKGDALLF 222
+ LG G+RIATVL Y+S GG TVF ++ + + P K DAL +
Sbjct: 435 ESLGTGNRIATVLFYMSQPSHGGGTVFTEAKST----------------ILPTKNDALFW 478
Query: 223 FSLHPDASTDSTSLHGSCPVIEGEKWSATKWIHVR--NFDKP 262
++L+ + + H +CPV+ G KW + KWIH + F +P
Sbjct: 479 YNLYKQGDGNPDTRHAACPVLVGIKWVSNKWIHEKGNEFRRP 520
>sp|Q20065|P4HA2_CAEEL Prolyl 4-hydroxylase subunit alpha-2 OS=Caenorhabditis elegans
GN=phy-2 PE=1 SV=1
Length = 539
Score = 122 bits (307), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 72/219 (32%), Positives = 112/219 (51%), Gaps = 22/219 (10%)
Query: 50 PSRVTQLSWNPRAFIYKGFLSDEECDHLIDLAKDKLETSMVADNESGKSIASEVRTSSGM 109
P +V L ++P A ++K + D E + + +LA KL+ + V ++++G+ + R S
Sbjct: 315 PIKVEILRFDPLAVLFKNVIHDSEIEVIKELASPKLKRATVQNSKTGELEHATYRISKSA 374
Query: 110 FLSKAQDEIVASIEARIAAWTFLPPENGEAMQILHYEHGQKYEPHFDFFRDKMNQQL--- 166
+L D ++ + RI +T L E +Q+ +Y G Y+PHFDF R +
Sbjct: 375 WLKGDLDPVIDRVNRRIEDFTNLNQATSEELQVANYGLGGHYDPHFDFARKEEKNAFKTL 434
Query: 167 -GGHRIATVLMYLSHVEKGGETVFPNSEVSQSRDGNWSECARRGYAVKPMKGDALLFFSL 225
G+RIATVL Y+S E+GG TVF + G AV P K DAL +++L
Sbjct: 435 NTGNRIATVLFYMSQPERGGATVFNHL----------------GTAVFPSKNDALFWYNL 478
Query: 226 HPDASTDSTSLHGSCPVIEGEKWSATKWIHVRN--FDKP 262
D D + H +CPV+ G KW + KWIH + F +P
Sbjct: 479 RRDGEGDLRTRHAACPVLLGVKWVSNKWIHEKGQEFTRP 517
>sp|Q5ZLK5|P4HA2_CHICK Prolyl 4-hydroxylase subunit alpha-2 OS=Gallus gallus GN=P4HA2 PE=2
SV=1
Length = 534
Score = 122 bits (306), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 70/201 (34%), Positives = 102/201 (50%), Gaps = 18/201 (8%)
Query: 59 NPRAFIYKGFLSDEECDHLIDLAKDKLETSMVADNESGKSIASEVRTSSGMFLSKAQDEI 118
+P Y +SDEE + + LAK KL + V D ++G + R S +L + D +
Sbjct: 336 SPHIVRYYDVMSDEEIEKIKQLAKPKLARATVRDPKTGVLTVASYRVSKSSWLEEDDDPV 395
Query: 119 VASIEARIAAWTFLPPENGEAMQILHYEHGQKYEPHFDFFRDKMNQQLG--GHRIATVLM 176
VA + R+ T L + E +Q+ +Y G +YEPHFDF R + L G+R+AT L
Sbjct: 396 VAKVNQRMQQITGLTVKTAELLQVANYGMGGQYEPHFDFSRRPFDSTLKSEGNRLATFLN 455
Query: 177 YLSHVEKGGETVFPNSEVSQSRDGNWSECARRGYAVKPMKGDALLFFSLHPDASTDSTSL 236
Y+S VE GG TVFP+ G A+ P KG A+ +++L D +
Sbjct: 456 YMSDVEAGGATVFPDF----------------GAAIWPKKGTAVFWYNLFRSGEGDYRTR 499
Query: 237 HGSCPVIEGEKWSATKWIHVR 257
H +CPV+ G KW + KW H R
Sbjct: 500 HAACPVLVGCKWVSNKWFHER 520
>sp|Q6W3E9|P4HA3_RAT Prolyl 4-hydroxylase subunit alpha-3 OS=Rattus norvegicus GN=P4ha3
PE=2 SV=1
Length = 544
Score = 121 bits (304), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 80/229 (34%), Positives = 117/229 (51%), Gaps = 26/229 (11%)
Query: 48 FDPSRVTQLSWNPRAFIYKGFLSDEECDHLIDLAKDKLETSMVADNESGKSIASEVRTSS 107
P+R + P +Y F+SDEE + +LA+ L+ S+VA E K + E R S
Sbjct: 334 LQPARKEVIHLRPLVALYHDFVSDEEAQKIRELAEPWLQRSVVASGE--KQLQVEYRISK 391
Query: 108 GMFLSKAQDEIVASIEARIAAWTFL--PPENGEAMQILHYEHGQKYEPHFDFFRDK---M 162
+L D ++ +++ RIAA T L P E +Q+++Y G YEPHFD +
Sbjct: 392 SAWLKDTVDPVLVTLDRRIAALTGLDIQPPYAEYLQVVNYGIGGHYEPHFDHATSPSSPL 451
Query: 163 NQQLGGHRIATVLMYLSHVEKGGETVFPNSEVSQSRDGNWSECARRGYAVKPMKGDALLF 222
+ G+R AT+++YLS VE GG T F GN+S V +K AL +
Sbjct: 452 YKMKSGNRAATLMIYLSSVEAGGATAFIY--------GNFS--------VPVVKNAALFW 495
Query: 223 FSLHPDASTDSTSLHGSCPVIEGEKWSATKWIHV--RNFDKP-EKEPED 268
++LH D +LH CPV+ G+KW A KWIH + F +P + PED
Sbjct: 496 WNLHRSGEGDDDTLHAGCPVLVGDKWVANKWIHEYGQEFRRPCDTNPED 544
>sp|Q60715|P4HA1_MOUSE Prolyl 4-hydroxylase subunit alpha-1 OS=Mus musculus GN=P4ha1 PE=2
SV=2
Length = 534
Score = 120 bits (301), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 73/209 (34%), Positives = 106/209 (50%), Gaps = 22/209 (10%)
Query: 60 PRAFIYKGFLSDEECDHLIDLAKDKLETSMVADNESGKSIASEVRTSSGMFLSKAQDEIV 119
PR + +SD E + + DLAK +L + +++ +G R S +LS +D +V
Sbjct: 335 PRIIRFHDIISDAEIEIVKDLAKPRLRRATISNPVTGALETVHYRISKSAWLSGYEDPVV 394
Query: 120 ASIEARIAAWTFLPPENGEAMQILHYEHGQKYEPHFDFFR----DKMNQQLGGHRIATVL 175
+ I RI T L E +Q+ +Y G +YEPHFDF R D + G+RIAT L
Sbjct: 395 SRINMRIQDLTGLDVSTAEELQVANYGVGGQYEPHFDFARKDEPDAFRELGTGNRIATWL 454
Query: 176 MYLSHVEKGGETVFPNSEVSQSRDGNWSECARRGYAVKPMKGDALLFFSLHPDASTDSTS 235
Y+S V GG TVFP EV G +V P KG A+ +++L D ++
Sbjct: 455 FYMSDVSAGGATVFP--EV--------------GASVWPKKGTAVFWYNLFASGEGDYST 498
Query: 236 LHGSCPVIEGEKWSATKWIHVRN--FDKP 262
H +CPV+ G KW + KW+H R F +P
Sbjct: 499 RHAACPVLVGNKWVSNKWLHERGQEFRRP 527
>sp|Q60716|P4HA2_MOUSE Prolyl 4-hydroxylase subunit alpha-2 OS=Mus musculus GN=P4ha2 PE=2
SV=1
Length = 537
Score = 120 bits (300), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 69/203 (33%), Positives = 103/203 (50%), Gaps = 20/203 (9%)
Query: 59 NPRAFIYKGFLSDEECDHLIDLAKDKLETSMVADNESGKSIASEVRTSSGMFLSKAQDEI 118
+P Y +SDEE + + ++AK KL + V D ++G + R S +L + D +
Sbjct: 337 SPHIVRYYDVMSDEEIERIKEIAKPKLARATVRDPKTGVLTVASYRVSKSSWLEEDDDPV 396
Query: 119 VASIEARIAAWTFLPPENGEAMQILHYEHGQKYEPHFDFFR----DKMNQQLGGHRIATV 174
VA + R+ T L + E +Q+ +Y G +YEPHFDF R D + G+R+AT
Sbjct: 397 VARVNRRMQHITGLTVKTAELLQVANYGMGGQYEPHFDFSRSDDEDAFKRLGTGNRVATF 456
Query: 175 LMYLSHVEKGGETVFPNSEVSQSRDGNWSECARRGYAVKPMKGDALLFFSLHPDASTDST 234
L Y+S VE GG TVFP+ G A+ P KG A+ +++L D
Sbjct: 457 LNYMSDVEAGGATVFPDL----------------GAAIWPKKGTAVFWYNLLRSGEGDYR 500
Query: 235 SLHGSCPVIEGEKWSATKWIHVR 257
+ H +CPV+ G KW + KW H R
Sbjct: 501 TRHAACPVLVGCKWVSNKWFHER 523
>sp|Q6W3F0|P4HA3_MOUSE Prolyl 4-hydroxylase subunit alpha-3 OS=Mus musculus GN=P4ha3 PE=2
SV=1
Length = 542
Score = 120 bits (300), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 80/229 (34%), Positives = 116/229 (50%), Gaps = 26/229 (11%)
Query: 48 FDPSRVTQLSWNPRAFIYKGFLSDEECDHLIDLAKDKLETSMVADNESGKSIASEVRTSS 107
P+R + P +Y F+SDEE + +LA+ L+ S+VA E K + E R S
Sbjct: 332 LQPARKEVVHLRPLIALYHDFVSDEEAQKIRELAEPWLQRSVVASGE--KQLQVEYRISK 389
Query: 108 GMFLSKAQDEIVASIEARIAAWTFL--PPENGEAMQILHYEHGQKYEPHFDFFRDK---M 162
+L D ++ +++ RIAA T L P E +Q+++Y G YEPHFD +
Sbjct: 390 SAWLKDTVDPMLVTLDHRIAALTGLDIQPPYAEYLQVVNYGIGGHYEPHFDHATSPSSPL 449
Query: 163 NQQLGGHRIATVLMYLSHVEKGGETVFPNSEVSQSRDGNWSECARRGYAVKPMKGDALLF 222
+ G+R+AT ++YLS VE GG T F GN+S V +K AL +
Sbjct: 450 YRMKSGNRVATFMIYLSSVEAGGATAFIY--------GNFS--------VPVVKNAALFW 493
Query: 223 FSLHPDASTDSTSLHGSCPVIEGEKWSATKWIHV--RNFDKP-EKEPED 268
++LH D +LH CPV+ G+KW A KWIH + F +P PED
Sbjct: 494 WNLHRSGEGDGDTLHAGCPVLVGDKWVANKWIHEYGQEFRRPCSTNPED 542
>sp|O15460|P4HA2_HUMAN Prolyl 4-hydroxylase subunit alpha-2 OS=Homo sapiens GN=P4HA2 PE=1
SV=1
Length = 535
Score = 119 bits (299), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 72/210 (34%), Positives = 108/210 (51%), Gaps = 22/210 (10%)
Query: 59 NPRAFIYKGFLSDEECDHLIDLAKDKLETSMVADNESGKSIASEVRTSSGMFLSKAQDEI 118
+P Y +SDEE + + ++AK KL + V D ++G + R S +L + D +
Sbjct: 335 SPHIVRYYDVMSDEEIERIKEIAKPKLARATVRDPKTGVLTVASYRVSKSSWLEEDDDPV 394
Query: 119 VASIEARIAAWTFLPPENGEAMQILHYEHGQKYEPHFDFFRDKMN---QQLG-GHRIATV 174
VA + R+ T L + E +Q+ +Y G +YEPHFDF R+ + LG G+R+AT
Sbjct: 395 VARVNRRMQHITGLTVKTAELLQVANYGVGGQYEPHFDFSRNDERDTFKHLGTGNRVATF 454
Query: 175 LMYLSHVEKGGETVFPNSEVSQSRDGNWSECARRGYAVKPMKGDALLFFSLHPDASTDST 234
L Y+S VE GG TVFP+ G A+ P KG A+ +++L D
Sbjct: 455 LNYMSDVEAGGATVFPDL----------------GAAIWPKKGTAVFWYNLLRSGEGDYR 498
Query: 235 SLHGSCPVIEGEKWSATKWIHVRN--FDKP 262
+ H +CPV+ G KW + KW H R F +P
Sbjct: 499 TRHAACPVLVGCKWVSNKWFHERGQEFLRP 528
>sp|Q75UG4|P4HA3_BOVIN Prolyl 4-hydroxylase subunit alpha-3 OS=Bos taurus GN=P4HA3 PE=2
SV=1
Length = 544
Score = 118 bits (296), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 81/232 (34%), Positives = 115/232 (49%), Gaps = 32/232 (13%)
Query: 48 FDPSRVTQLSWNPRAFIYKGFLSDEECDHLIDLAKDKLETSMVADNESGKSIASEVRTSS 107
P R + P +Y F+SD E + LA+ L+ S+VA E K + E R S
Sbjct: 334 LQPVRKEVIHLEPYVVLYHDFVSDAEAQTIRGLAEPWLQRSVVASGE--KQLPVEYRISK 391
Query: 108 GMFLSKAQDEIVASIEARIAAWTFL--PPENGEAMQILHYEHGQKYEPHFDFFRD----- 160
+L D ++ +++ RIAA T L P E +Q+++Y G YEPHFD
Sbjct: 392 SAWLKDTVDPVLVTLDHRIAALTGLDVQPPYAEYLQVVNYGIGGHYEPHFDHATSPSSPL 451
Query: 161 -KMNQQLGGHRIATVLMYLSHVEKGGETVFPNSEVSQSRDGNWSECARRGYAVKPMKGDA 219
+MN G+R+AT ++YLS VE GG T F GN+S V +K A
Sbjct: 452 YRMN---SGNRVATFMIYLSSVEAGGATAFIY--------GNFS--------VPVVKNAA 492
Query: 220 LLFFSLHPDASTDSTSLHGSCPVIEGEKWSATKWIHV--RNFDKP-EKEPED 268
L +++LH D +LH +CPV+ G+KW A KWIH + F +P PED
Sbjct: 493 LFWWNLHRSGEGDGDTLHAACPVLVGDKWVANKWIHEYGQEFRRPCSSRPED 544
>sp|Q5RAG8|P4HA1_PONAB Prolyl 4-hydroxylase subunit alpha-1 OS=Pongo abelii GN=P4HA1 PE=2
SV=1
Length = 534
Score = 118 bits (295), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 70/209 (33%), Positives = 104/209 (49%), Gaps = 22/209 (10%)
Query: 60 PRAFIYKGFLSDEECDHLIDLAKDKLETSMVADNESGKSIASEVRTSSGMFLSKAQDEIV 119
PR + +SD E + + DLAK +L + +++ +G R S +LS ++ +V
Sbjct: 335 PRIIRFHDIISDAEIEIVKDLAKPRLRRATISNPITGDLETVHYRISKSAWLSGYENPVV 394
Query: 120 ASIEARIAAWTFLPPENGEAMQILHYEHGQKYEPHFDFFR----DKMNQQLGGHRIATVL 175
+ I RI T L E +Q+ +Y G +YEPHFDF R D + G+RIAT L
Sbjct: 395 SRINMRIQDLTGLDVSTAEELQVANYGVGGQYEPHFDFARKDEPDAFKELGTGNRIATWL 454
Query: 176 MYLSHVEKGGETVFPNSEVSQSRDGNWSECARRGYAVKPMKGDALLFFSLHPDASTDSTS 235
Y+S V GG TVFP G +V P KG A+ +++L D ++
Sbjct: 455 FYMSDVSAGGATVFPEV----------------GASVWPKKGTAVFWYNLFASGEGDYST 498
Query: 236 LHGSCPVIEGEKWSATKWIHVRN--FDKP 262
H +CPV+ G KW + KW+H R F +P
Sbjct: 499 RHAACPVLVGNKWVSNKWLHERGQEFRRP 527
>sp|P13674|P4HA1_HUMAN Prolyl 4-hydroxylase subunit alpha-1 OS=Homo sapiens GN=P4HA1 PE=1
SV=2
Length = 534
Score = 118 bits (295), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 70/209 (33%), Positives = 104/209 (49%), Gaps = 22/209 (10%)
Query: 60 PRAFIYKGFLSDEECDHLIDLAKDKLETSMVADNESGKSIASEVRTSSGMFLSKAQDEIV 119
PR + +SD E + + DLAK +L + +++ +G R S +LS ++ +V
Sbjct: 335 PRIIRFHDIISDAEIEIVKDLAKPRLRRATISNPITGDLETVHYRISKSAWLSGYENPVV 394
Query: 120 ASIEARIAAWTFLPPENGEAMQILHYEHGQKYEPHFDFFR----DKMNQQLGGHRIATVL 175
+ I RI T L E +Q+ +Y G +YEPHFDF R D + G+RIAT L
Sbjct: 395 SRINMRIQDLTGLDVSTAEELQVANYGVGGQYEPHFDFARKDEPDAFKELGTGNRIATWL 454
Query: 176 MYLSHVEKGGETVFPNSEVSQSRDGNWSECARRGYAVKPMKGDALLFFSLHPDASTDSTS 235
Y+S V GG TVFP G +V P KG A+ +++L D ++
Sbjct: 455 FYMSDVSAGGATVFPEV----------------GASVWPKKGTAVFWYNLFASGEGDYST 498
Query: 236 LHGSCPVIEGEKWSATKWIHVRN--FDKP 262
H +CPV+ G KW + KW+H R F +P
Sbjct: 499 RHAACPVLVGNKWVSNKWLHERGQEFRRP 527
>sp|Q1RMU3|P4HA1_BOVIN Prolyl 4-hydroxylase subunit alpha-1 OS=Bos taurus GN=P4HA1 PE=1
SV=1
Length = 534
Score = 117 bits (293), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 70/209 (33%), Positives = 104/209 (49%), Gaps = 22/209 (10%)
Query: 60 PRAFIYKGFLSDEECDHLIDLAKDKLETSMVADNESGKSIASEVRTSSGMFLSKAQDEIV 119
PR + +SD E + + DLAK +L + +++ +G R S +LS ++ +V
Sbjct: 335 PRIIRFHDIISDAEIEVVKDLAKPRLRRATISNPITGDLETVHYRISKSAWLSGYENPVV 394
Query: 120 ASIEARIAAWTFLPPENGEAMQILHYEHGQKYEPHFDFFR----DKMNQQLGGHRIATVL 175
+ I RI T L E +Q+ +Y G +YEPHFDF R D + G+RIAT L
Sbjct: 395 SRINMRIQDLTGLDVSTAEELQVANYGVGGQYEPHFDFARKDEPDAFKELGTGNRIATWL 454
Query: 176 MYLSHVEKGGETVFPNSEVSQSRDGNWSECARRGYAVKPMKGDALLFFSLHPDASTDSTS 235
Y+S V GG TVFP G +V P KG A+ +++L D ++
Sbjct: 455 FYMSDVLAGGATVFPEV----------------GASVWPKKGTAVFWYNLFASGEGDYST 498
Query: 236 LHGSCPVIEGEKWSATKWIHVRN--FDKP 262
H +CPV+ G KW + KW+H R F +P
Sbjct: 499 RHAACPVLVGNKWVSNKWLHERGQEFRRP 527
>sp|Q7Z4N8|P4HA3_HUMAN Prolyl 4-hydroxylase subunit alpha-3 OS=Homo sapiens GN=P4HA3 PE=1
SV=1
Length = 544
Score = 115 bits (288), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 77/229 (33%), Positives = 112/229 (48%), Gaps = 26/229 (11%)
Query: 48 FDPSRVTQLSWNPRAFIYKGFLSDEECDHLIDLAKDKLETSMVADNESGKSIASEVRTSS 107
P R + P +Y F+SD E + +LA+ L+ S+VA E K + E R S
Sbjct: 334 LQPIRKEVIHLEPYIALYHDFVSDSEAQKIRELAEPWLQRSVVASGE--KQLQVEYRISK 391
Query: 108 GMFLSKAQDEIVASIEARIAAWTFLP--PENGEAMQILHYEHGQKYEPHFDFFRDK---M 162
+L D + ++ RIAA T L P E +Q+++Y G YEPHFD +
Sbjct: 392 SAWLKDTVDPKLVTLNHRIAALTGLDVRPPYAEYLQVVNYGIGGHYEPHFDHATSPSSPL 451
Query: 163 NQQLGGHRIATVLMYLSHVEKGGETVFPNSEVSQSRDGNWSECARRGYAVKPMKGDALLF 222
+ G+R+AT ++YLS VE GG T F + +S V ++ AL +
Sbjct: 452 YRMKSGNRVATFMIYLSSVEAGGATAFIYANLS----------------VPVVRNAALFW 495
Query: 223 FSLHPDASTDSTSLHGSCPVIEGEKWSATKWIHV--RNFDKP-EKEPED 268
++LH DS +LH CPV+ G+KW A KWIH + F +P PED
Sbjct: 496 WNLHRSGEGDSDTLHAGCPVLVGDKWVANKWIHEYGQEFRRPCSSSPED 544
>sp|Q5UP57|P4H_MIMIV Putative prolyl 4-hydroxylase OS=Acanthamoeba polyphaga mimivirus
GN=MIMI_L593 PE=1 SV=1
Length = 242
Score = 85.9 bits (211), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 63/205 (30%), Positives = 89/205 (43%), Gaps = 28/205 (13%)
Query: 61 RAFIYKGFLSDEECDHLIDLAKDKLETSMVADNESGKSIASEVRTSSGMFLSKAQDEIVA 120
+ F+ ++ +C ++ A KL S V SG +R S M++SK + +V
Sbjct: 59 KPFVLNNLINPTKCQEIMQFANGKLFDSQVL---SGTD--KNIRNSQQMWISK-NNPMVK 112
Query: 121 SIEARIAAWTFLPPENGEAMQILHYEHGQKYEPHFDFFRDKMNQ-----QLGGHRIATVL 175
I I +P +N E +Q++ Y Q Y H D D Q + GG RI TVL
Sbjct: 113 PIFENICRQFNVPFDNAEDLQVVRYLPNQYYNEHHDSCCDSSKQCSEFIERGGQRILTVL 172
Query: 176 MYLSHVEKGGETVFPNSEVSQSRDGNWSECARRGYAVKPMKGDALLFFSLHPDAST-DST 234
+YL++ G T FPN KP GDAL+F+ L +++
Sbjct: 173 IYLNNEFSDGHTYFPN----------------LNQKFKPKTGDALVFYPLANNSNKCHPY 216
Query: 235 SLHGSCPVIEGEKWSATKWIHVRNF 259
SLH PV GEKW A W R F
Sbjct: 217 SLHAGMPVTSGEKWIANLWFRERKF 241
>sp|Q9NXG6|P4HTM_HUMAN Transmembrane prolyl 4-hydroxylase OS=Homo sapiens GN=P4HTM PE=1
SV=2
Length = 502
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/198 (31%), Positives = 91/198 (45%), Gaps = 36/198 (18%)
Query: 95 SGKSIASE-VRTSSGMFLSKAQ--DEIVASIEARIAAWTFLPPEN---GEAMQILHYEHG 148
S K+ +SE VR S +L + + I+ +I R+ T L PE E +Q++ Y G
Sbjct: 263 SHKAESSELVRNSHHTWLYQGEGAHHIMRAIRQRVLRLTRLSPEIVELSEPLQVVRYGEG 322
Query: 149 QKYEPHFD---FFRDKM--NQQLGGH---------RIATVLMYLSHVEKGGETVFPNS-- 192
Y H D + + + + +L + R TVL YL++V GGETVFP +
Sbjct: 323 GHYHAHVDSGPVYPETICSHTKLVANESVPFETSCRYMTVLFYLNNVTGGGETVFPVADN 382
Query: 193 ----EVSQSRDG-----NWSECARRGYAVKPMKGDALLFFSLHPDAS-----TDSTSLHG 238
E+S +D C + VKP +G A+ +++ PD D SLHG
Sbjct: 383 RTYDEMSLIQDDVDLRDTRRHCDKGNLRVKPQQGTAVFWYNYLPDGQGWVGDVDDYSLHG 442
Query: 239 SCPVIEGEKWSATKWIHV 256
C V G KW A WI+V
Sbjct: 443 GCLVTRGTKWIANNWINV 460
Score = 33.5 bits (75), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 53 VTQLSWNPRAFIYKGFLSDEECDHLIDLAKDK-LETSMVADNESGKSIASEVRTSS 107
+ LS P F GFL+DEEC +I LA+ K L+ S + E + S ++ S
Sbjct: 135 IRTLSLKPLLFEIPGFLTDEECRLIIHLAQMKGLQRSQILPTEEYEEAMSTMQVSQ 190
>sp|Q8BG58|P4HTM_MOUSE Transmembrane prolyl 4-hydroxylase OS=Mus musculus GN=P4htm PE=2
SV=1
Length = 503
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 85/189 (44%), Gaps = 35/189 (18%)
Query: 103 VRTSSGMFLSKAQ--DEIVASIEARIAAWTFLPPEN---GEAMQILHYEHGQKYEPHFD- 156
VR S +L + + ++ +I R+ T L PE E +Q++ Y G Y H D
Sbjct: 273 VRNSHHTWLHQGEGAHHVMRAIRQRVLRLTRLSPEIVEFSEPLQVVRYGEGGHYHAHVDS 332
Query: 157 --FFRDKM--NQQLGGH---------RIATVLMYLSHVEKGGETVFPNS------EVSQS 197
+ + + + +L + R TVL YL++V GGETVFP + E+S
Sbjct: 333 GPVYPETICSHTKLVANESVPFETSCRYMTVLFYLNNVTGGGETVFPVADNRTYDEMSLI 392
Query: 198 RDG-----NWSECARRGYAVKPMKGDALLFFSLHPDAS-----TDSTSLHGSCPVIEGEK 247
+D C + VKP +G A+ +++ PD D SLHG C V G K
Sbjct: 393 QDDVDLRDTRRHCDKGNLRVKPQQGTAVFWYNYLPDGQGWVGEVDDYSLHGGCLVTRGTK 452
Query: 248 WSATKWIHV 256
W A WI+V
Sbjct: 453 WIANNWINV 461
Score = 36.2 bits (82), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 46/98 (46%), Gaps = 12/98 (12%)
Query: 53 VTQLSWNPRAFIYKGFLSDEECDHLIDLAKDK-LETSMVADNESGKSIASEVRTSS---G 108
+ LS P F GFLSDEEC +I LA+ K L+ S + E + S ++ S
Sbjct: 136 IRTLSLKPLLFEIPGFLSDEECRLIIHLAQMKGLQRSQILPTEEYEEAMSAMQVSQLDLF 195
Query: 109 MFLSKAQD------EIVASIEARIAAWTFLPPENGEAM 140
L + D E++A + R+ ++ PEN + M
Sbjct: 196 QLLDQNHDGRLQLREVLA--QTRLGNGRWMTPENIQEM 231
>sp|Q19673|TYR3_CAEEL Putative tyrosinase-like protein tyr-3 OS=Caenorhabditis elegans
GN=tyr-3 PE=3 SV=5
Length = 693
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 6/51 (11%)
Query: 268 DDDCVDEDLNCVVWAKAGECKKNPLYMVGSKSSRGYCRKSCKVCKPSSVSS 318
+++C D NC +W+++GEC KNPL+M + CR SC+ C S ++
Sbjct: 513 NEECSDRHTNCAMWSRSGECNKNPLWMSEN------CRSSCQKCGRSRAAT 557
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 6/46 (13%)
Query: 271 CVDEDLNCVVWAKAGECKKNPLYMVGSKSSRGYCRKSCKVCKPSSV 316
C +ED C +WA+ G+C+ NP YM C+ SC VC+P+ V
Sbjct: 591 CYNEDQCCPIWAQRGQCRSNPGYMTCQ------CKVSCGVCRPNYV 630
Score = 39.7 bits (91), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 6/44 (13%)
Query: 271 CVDEDLNCVVWAKAGECKKNPLYMVGSKSSRGYCRKSCKVCKPS 314
C +E+ C W+ GEC+KNP+YM +C+ SC+ C P+
Sbjct: 472 CFNENECCGPWSAKGECQKNPVYM------NVWCKASCRQCTPN 509
Score = 32.0 bits (71), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 7/41 (17%)
Query: 271 CVDEDLNCVVWAKAGECKKNPLYMVGSKSSRGYCRKSCKVC 311
C D +C WA+ GEC KN K CR+SC C
Sbjct: 634 CADYHYDCAAWARRGECLKN-------KWMPENCRRSCNTC 667
>sp|Q0AP20|Y1675_MARMM PKHD-type hydroxylase Mmar10_1675 OS=Maricaulis maris (strain
MCS10) GN=Mmar10_1675 PE=3 SV=1
Length = 219
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/200 (21%), Positives = 79/200 (39%), Gaps = 39/200 (19%)
Query: 72 EECDHLIDL-AKDKLETSMVADNESGKSIASEVRTSSGMFLSKAQDEIVASIEARIAAWT 130
E+ DHL DL + + +++ + + +G + + E+ ++ A +
Sbjct: 12 EQVDHLRDLIGQGGFVDGGTTAGQVARAVKANEQLEAGARVDTVRSEVRKALMAHAGFVS 71
Query: 131 FLPPENGEAMQILHYEHGQKYEPHFDFFRDKMNQQLGGHRI-ATVLMYLSHVEK--GGET 187
F P+ + + Y G Y PH D + +GG R + ++LS + GGE
Sbjct: 72 FARPKTLSRILVSRYRDGMAYGPHID------DALMGGRRADLSFTLFLSDPDSYDGGEL 125
Query: 188 VF--PNSEVSQSRDGNWSECARRGYAVKPMKGDALLFFSLHPDASTDSTSLHGSCPVIEG 245
V P+ E +K GDA+++ ++++H PV G
Sbjct: 126 VMDGPDGETE----------------IKLAAGDAVVYA---------TSAIHQVAPVTRG 160
Query: 246 EKWSATKWIH--VRNFDKPE 263
E+ + W+ VR D+ E
Sbjct: 161 ERVAVVGWVRSLVRRPDQRE 180
>sp|P34269|TYR1_CAEEL Putative tyrosinase-like protein tyr-1 OS=Caenorhabditis elegans
GN=tyr-1 PE=3 SV=2
Length = 601
Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 7/52 (13%)
Query: 261 KPEKEPEDDDCVDEDLNCVVWAKAGECKKNPLYMVGSKSSRGYCRKSCKVCK 312
+P P+ + C +ED C W++ EC+ N +YM YCRKSC +C+
Sbjct: 471 RPATTPQSN-CYNEDPCCNQWSRQNECRTNTVYM------NRYCRKSCGLCQ 515
>sp|Q6D8C1|MUTS_ERWCT DNA mismatch repair protein MutS OS=Erwinia carotovora subsp.
atroseptica (strain SCRI 1043 / ATCC BAA-672) GN=mutS
PE=3 SV=1
Length = 854
Score = 33.1 bits (74), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 52/107 (48%), Gaps = 9/107 (8%)
Query: 63 FIYKGFLSDEECDHLIDLAKDKLETSMVADNESGKSIA-SEVRTSSGMF-LSKAQD-EIV 119
+ G +SDE L ++K + + A + G+ + + SSG F +S+ D E +
Sbjct: 115 IVTPGTISDEA------LLQEKQDNLLAAIWQDGRGFGYATLDISSGRFRVSEPADRETM 168
Query: 120 ASIEARIAAWTFLPPENGEAMQILHYEHGQKYEPHFDFFRDKMNQQL 166
A+ R L PE+ E+M+++ HG + P ++F D QQL
Sbjct: 169 AAELQRTNPAELLYPESFESMELIDNRHGLRRRPMWEFEPDTARQQL 215
>sp|Q19269|NAS14_CAEEL Zinc metalloproteinase nas-14 OS=Caenorhabditis elegans GN=nas-14
PE=2 SV=2
Length = 503
Score = 33.1 bits (74), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 6/42 (14%)
Query: 271 CVDEDLNCVVWAKAGECKKNPLYMVGSKSSRGYCRKSCKVCK 312
C D + +C +W + G C+ + YM YCRK+C +C+
Sbjct: 380 CEDLNAHCGMWEQLGHCQHSVKYMA------HYCRKACNLCE 415
Score = 32.3 bits (72), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 6/41 (14%)
Query: 271 CVDEDLNCVVWAKAGECKKNPLYMVGSKSSRGYCRKSCKVC 311
C D++L C WAK GEC +M + +C+ SC C
Sbjct: 469 CEDKNLFCSYWAKIGECNSESKFM------KIFCKASCGKC 503
>sp|B1JJF1|MUTS_YERPY DNA mismatch repair protein MutS OS=Yersinia pseudotuberculosis
serotype O:3 (strain YPIII) GN=mutS PE=3 SV=1
Length = 851
Score = 33.1 bits (74), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 106 SSGMF--LSKAQDEIVASIEARIAAWTFLPPENGEAMQILHYEHGQKYEPHFDFFRDKMN 163
SSG F A E +A+ R L PEN E M ++ + HG + P ++F D
Sbjct: 151 SSGRFRVAEPADLETMAAELQRTNPAELLYPENFEPMSLIEHRHGLRRRPLWEFELDTAK 210
Query: 164 QQL 166
QQL
Sbjct: 211 QQL 213
>sp|A4TQ04|MUTS_YERPP DNA mismatch repair protein MutS OS=Yersinia pestis (strain
Pestoides F) GN=mutS PE=3 SV=1
Length = 851
Score = 33.1 bits (74), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 106 SSGMF--LSKAQDEIVASIEARIAAWTFLPPENGEAMQILHYEHGQKYEPHFDFFRDKMN 163
SSG F A E +A+ R L PEN E M ++ + HG + P ++F D
Sbjct: 151 SSGRFRVAEPADLETMAAELQRTNPAELLYPENFEPMSLIEHRHGLRRRPLWEFELDTAK 210
Query: 164 QQL 166
QQL
Sbjct: 211 QQL 213
>sp|Q1CLQ9|MUTS_YERPN DNA mismatch repair protein MutS OS=Yersinia pestis bv. Antiqua
(strain Nepal516) GN=mutS PE=3 SV=1
Length = 851
Score = 33.1 bits (74), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 106 SSGMF--LSKAQDEIVASIEARIAAWTFLPPENGEAMQILHYEHGQKYEPHFDFFRDKMN 163
SSG F A E +A+ R L PEN E M ++ + HG + P ++F D
Sbjct: 151 SSGRFRVAEPADLETMAAELQRTNPAELLYPENFEPMSLIEHRHGLRRRPLWEFELDTAK 210
Query: 164 QQL 166
QQL
Sbjct: 211 QQL 213
>sp|A9R111|MUTS_YERPG DNA mismatch repair protein MutS OS=Yersinia pestis bv. Antiqua
(strain Angola) GN=mutS PE=3 SV=1
Length = 851
Score = 33.1 bits (74), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 106 SSGMF--LSKAQDEIVASIEARIAAWTFLPPENGEAMQILHYEHGQKYEPHFDFFRDKMN 163
SSG F A E +A+ R L PEN E M ++ + HG + P ++F D
Sbjct: 151 SSGRFRVAEPADLETMAAELQRTNPAELLYPENFEPMSLIEHRHGLRRRPLWEFELDTAK 210
Query: 164 QQL 166
QQL
Sbjct: 211 QQL 213
>sp|Q8ZBQ3|MUTS_YERPE DNA mismatch repair protein MutS OS=Yersinia pestis GN=mutS PE=3
SV=1
Length = 851
Score = 33.1 bits (74), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 106 SSGMF--LSKAQDEIVASIEARIAAWTFLPPENGEAMQILHYEHGQKYEPHFDFFRDKMN 163
SSG F A E +A+ R L PEN E M ++ + HG + P ++F D
Sbjct: 151 SSGRFRVAEPADLETMAAELQRTNPAELLYPENFEPMSLIEHRHGLRRRPLWEFELDTAK 210
Query: 164 QQL 166
QQL
Sbjct: 211 QQL 213
>sp|Q66EB5|MUTS_YERPS DNA mismatch repair protein MutS OS=Yersinia pseudotuberculosis
serotype I (strain IP32953) GN=mutS PE=3 SV=1
Length = 851
Score = 33.1 bits (74), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 106 SSGMF--LSKAQDEIVASIEARIAAWTFLPPENGEAMQILHYEHGQKYEPHFDFFRDKMN 163
SSG F A E +A+ R L PEN E M ++ + HG + P ++F D
Sbjct: 151 SSGRFRVAEPADLETMAAELQRTNPAELLYPENFEPMSLIEHRHGLRRRPLWEFELDTAK 210
Query: 164 QQL 166
QQL
Sbjct: 211 QQL 213
>sp|B2K584|MUTS_YERPB DNA mismatch repair protein MutS OS=Yersinia pseudotuberculosis
serotype IB (strain PB1/+) GN=mutS PE=3 SV=1
Length = 851
Score = 33.1 bits (74), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 106 SSGMF--LSKAQDEIVASIEARIAAWTFLPPENGEAMQILHYEHGQKYEPHFDFFRDKMN 163
SSG F A E +A+ R L PEN E M ++ + HG + P ++F D
Sbjct: 151 SSGRFRVAEPADLETMAAELQRTNPAELLYPENFEPMSLIEHRHGLRRRPLWEFELDTAK 210
Query: 164 QQL 166
QQL
Sbjct: 211 QQL 213
>sp|A7FLX1|MUTS_YERP3 DNA mismatch repair protein MutS OS=Yersinia pseudotuberculosis
serotype O:1b (strain IP 31758) GN=mutS PE=3 SV=1
Length = 851
Score = 33.1 bits (74), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 106 SSGMF--LSKAQDEIVASIEARIAAWTFLPPENGEAMQILHYEHGQKYEPHFDFFRDKMN 163
SSG F A E +A+ R L PEN E M ++ + HG + P ++F D
Sbjct: 151 SSGRFRVAEPADLETMAAELQRTNPAELLYPENFEPMSLIEHRHGLRRRPLWEFELDTAK 210
Query: 164 QQL 166
QQL
Sbjct: 211 QQL 213
>sp|Q1C471|MUTS_YERPA DNA mismatch repair protein MutS OS=Yersinia pestis bv. Antiqua
(strain Antiqua) GN=mutS PE=3 SV=1
Length = 854
Score = 33.1 bits (74), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 106 SSGMF--LSKAQDEIVASIEARIAAWTFLPPENGEAMQILHYEHGQKYEPHFDFFRDKMN 163
SSG F A E +A+ R L PEN E M ++ + HG + P ++F D
Sbjct: 151 SSGRFRVAEPADLETMAAELQRTNPAELLYPENFEPMSLIEHRHGLRRRPLWEFELDTAK 210
Query: 164 QQL 166
QQL
Sbjct: 211 QQL 213
>sp|A8MLB5|SYE_ALKOO Glutamate--tRNA ligase OS=Alkaliphilus oremlandii (strain OhILAs)
GN=gltX PE=3 SV=1
Length = 495
Score = 32.7 bits (73), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 66 KGFLSDEECDHLIDLAKDKLETSMVADNESGKSIASEVRTSSGM 109
K + E L+D+ K K+E + V D E GKS+ E++ +G+
Sbjct: 403 KELIQVEHLPQLLDVLKAKVEAAEVIDEEFGKSVFKEIQKETGI 446
>sp|A5FZW5|RL3_ACICJ 50S ribosomal protein L3 OS=Acidiphilium cryptum (strain JF-5)
GN=rplC PE=3 SV=1
Length = 227
Score = 32.3 bits (72), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
Query: 129 WTFLPPENGEAMQILHYE---HGQKYEPHFDFFRDKMNQQLGGHRIATVLMYLSHVEKGG 185
W F E + I H G + +P F KM LGG RI T+ + ++ +++
Sbjct: 129 WNFRGLEASHGVSISHRSLGSTGNRQDPGKTFKNKKMAGHLGGERITTLNLEVAAIDEAR 188
Query: 186 ETVFPNSEVSQSRDG 200
+ V ++DG
Sbjct: 189 NLIMIKGAVPGAKDG 203
>sp|Q54WZ2|VACB_DICDI Vacuolin-B OS=Dictyostelium discoideum GN=vacB PE=1 SV=1
Length = 592
Score = 32.3 bits (72), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 66 KGFLSDEECDHLIDLAKDKLETSMVADNESGKSIASEVRTSSGMFLSKA---QDEIVASI 122
K L+ + C++ I+LA+ ++ET V D+E K +A + TS+ +A ++ + +
Sbjct: 423 KSHLARDLCEYGIELARLQIETMKVLDSEIAKKLAGQSVTSAEFTTKQATLVKEYDIKTT 482
Query: 123 EARIAAWT 130
EAR+ A T
Sbjct: 483 EARLKAET 490
>sp|A6LA97|PYRB_PARD8 Aspartate carbamoyltransferase OS=Parabacteroides distasonis
(strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=pyrB PE=3
SV=1
Length = 306
Score = 31.6 bits (70), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 44/101 (43%), Gaps = 21/101 (20%)
Query: 83 DKLETSMVADNESGKSIASEVRTSSGMFLSKAQDEIVASIEARIAAWTFLPPENGEAMQI 142
D L +MV D + G+++ S + GM VA E R +P E
Sbjct: 148 DNLTITMVGDLKYGRTVHSLI---VGMSHFHPTFHFVAPNELR------MPDEQKNFCD- 197
Query: 143 LHYEHGQKYEPHFDFFRDKMNQQLGGHRIATVLMYLSHVEK 183
+HG KYE H DF D +NQ T ++Y++ V++
Sbjct: 198 ---KHGLKYEEHTDFTEDIINQ--------TDILYMTRVQR 227
>sp|Q09662|YS51_CAEEL Uncharacterized protein ZK673.1 OS=Caenorhabditis elegans
GN=ZK673.1 PE=2 SV=2
Length = 154
Score = 31.6 bits (70), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Query: 271 CVDEDLNCVVWAKAGECKKNPLYMVGSKSSRGYCRKSCKVCKPS 314
CVD NC W K G C Y +K + YC K+CK+C +
Sbjct: 113 CVDSSTNCANWEKNGFCSST-FYDCANK--KQYCAKTCKLCTTT 153
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.132 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 125,953,902
Number of Sequences: 539616
Number of extensions: 5274109
Number of successful extensions: 12139
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 12066
Number of HSP's gapped (non-prelim): 45
length of query: 318
length of database: 191,569,459
effective HSP length: 117
effective length of query: 201
effective length of database: 128,434,387
effective search space: 25815311787
effective search space used: 25815311787
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)