Query 021056
Match_columns 318
No_of_seqs 299 out of 1418
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 07:15:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021056.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021056hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00052 prolyl 4-hydroxylase; 100.0 7E-79 1.5E-83 572.2 26.3 272 42-313 36-310 (310)
2 KOG1591 Prolyl 4-hydroxylase a 100.0 3.6E-51 7.8E-56 380.2 16.0 203 44-260 81-288 (289)
3 smart00702 P4Hc Prolyl 4-hydro 100.0 4.7E-36 1E-40 262.0 18.7 174 60-255 1-178 (178)
4 PRK05467 Fe(II)-dependent oxyg 100.0 8.6E-28 1.9E-32 216.9 15.7 166 62-258 2-180 (226)
5 PHA02869 C4L/C10L-like gene fa 99.7 4.4E-17 9.5E-22 155.1 12.4 141 85-258 45-193 (418)
6 PHA02813 hypothetical protein; 99.7 6.5E-17 1.4E-21 152.0 12.4 138 84-256 35-182 (354)
7 COG3128 PiuC Uncharacterized i 99.6 2.2E-15 4.8E-20 129.7 11.9 166 61-257 3-182 (229)
8 PF13640 2OG-FeII_Oxy_3: 2OG-F 99.6 1.3E-15 2.8E-20 120.4 6.9 91 140-255 1-100 (100)
9 smart00254 ShKT ShK toxin doma 99.0 1.8E-10 3.8E-15 73.2 1.0 33 271-311 1-33 (33)
10 KOG3710 EGL-Nine (EGLN) protei 98.9 3.1E-08 6.8E-13 88.4 12.5 168 61-258 54-241 (280)
11 PF01549 ShK: ShK domain-like; 98.6 5.4E-09 1.2E-13 68.1 0.0 36 270-311 1-38 (38)
12 PF13661 2OG-FeII_Oxy_4: 2OG-F 98.6 1E-07 2.2E-12 70.9 4.9 53 136-192 9-65 (70)
13 PF03336 Pox_C4_C10: Poxvirus 98.5 7.3E-07 1.6E-11 84.3 10.6 127 103-257 40-170 (339)
14 PF03171 2OG-FeII_Oxy: 2OG-Fe( 98.5 1.2E-07 2.6E-12 74.4 4.1 90 138-255 2-97 (98)
15 COG3751 EGL-9 Predicted prolin 98.2 2.3E-05 5.1E-10 71.9 12.8 101 139-258 137-242 (252)
16 PHA02866 Hypothetical protein; 98.1 1.2E-05 2.7E-10 74.5 8.8 135 85-257 32-170 (333)
17 TIGR02408 ectoine_ThpD ectoine 98.0 0.00015 3.2E-09 67.9 13.2 193 49-254 18-247 (277)
18 PF05721 PhyH: Phytanoyl-CoA d 97.7 0.00025 5.4E-09 61.6 10.2 166 62-244 6-205 (211)
19 PF09859 Oxygenase-NA: Oxygena 97.7 0.00016 3.4E-09 62.0 7.6 101 139-256 63-172 (173)
20 PF13759 2OG-FeII_Oxy_5: Putat 97.5 0.0002 4.4E-09 56.7 5.6 88 143-250 5-98 (101)
21 KOG3844 Predicted component of 97.4 0.0019 4E-08 62.5 11.4 176 58-262 33-223 (476)
22 TIGR01762 chlorin-enz chlorina 97.3 0.0083 1.8E-07 56.6 14.5 185 54-254 9-247 (288)
23 TIGR02466 conserved hypothetic 97.1 0.0031 6.7E-08 56.5 8.7 90 142-251 100-195 (201)
24 PF13532 2OG-FeII_Oxy_2: 2OG-F 96.6 0.017 3.7E-07 50.5 10.0 153 62-245 2-177 (194)
25 PF12851 Tet_JBP: Oxygenase do 96.3 0.014 2.9E-07 51.0 7.3 79 150-255 86-170 (171)
26 PRK15401 alpha-ketoglutarate-d 95.9 0.31 6.8E-06 44.0 13.8 160 58-245 16-196 (213)
27 PHA02923 hypothetical protein; 94.8 0.26 5.6E-06 46.3 10.0 101 116-256 43-145 (315)
28 KOG3200 Uncharacterized conser 94.6 0.12 2.6E-06 45.0 6.7 97 55-158 7-108 (224)
29 COG3826 Uncharacterized protei 93.2 0.48 1E-05 41.7 7.8 102 139-256 125-234 (236)
30 KOG3371 Uncharacterized conser 91.4 0.068 1.5E-06 48.9 0.5 39 268-313 24-64 (243)
31 PLN03001 oxidoreductase, 2OG-F 90.1 2.5 5.4E-05 39.3 9.7 109 118-257 88-214 (262)
32 PLN02485 oxidoreductase 89.3 2 4.4E-05 41.1 8.7 91 139-258 185-289 (329)
33 PLN02984 oxidoreductase, 2OG-F 88.7 4.5 9.7E-05 39.1 10.6 88 139-257 201-299 (341)
34 PLN00417 oxidoreductase, 2OG-F 87.4 3.5 7.6E-05 39.9 9.0 89 139-257 204-302 (348)
35 COG3145 AlkB Alkylated DNA rep 87.0 11 0.00024 33.6 11.1 98 103-223 71-170 (194)
36 PLN02904 oxidoreductase 86.8 6.5 0.00014 38.2 10.5 87 139-256 209-305 (357)
37 KOG3959 2-Oxoglutarate- and ir 86.7 0.89 1.9E-05 41.5 4.1 94 60-159 72-175 (306)
38 PLN02912 oxidoreductase, 2OG-F 86.4 4.5 9.8E-05 39.1 9.2 89 139-258 198-296 (348)
39 PLN02216 protein SRG1 85.7 5.6 0.00012 38.7 9.5 89 139-257 211-309 (357)
40 PLN02639 oxidoreductase, 2OG-F 85.7 7.1 0.00015 37.5 10.1 89 139-257 191-289 (337)
41 PLN02299 1-aminocyclopropane-1 84.9 8 0.00017 37.0 10.0 89 139-257 159-257 (321)
42 PLN02403 aminocyclopropanecarb 84.2 4.9 0.00011 38.2 8.2 89 140-258 155-254 (303)
43 TIGR00568 alkb DNA alkylation 84.2 9.6 0.00021 33.1 9.3 86 117-223 74-159 (169)
44 PLN02276 gibberellin 20-oxidas 84.0 11 0.00023 36.8 10.5 87 139-256 207-303 (361)
45 PLN02997 flavonol synthase 83.9 4.7 0.0001 38.6 8.0 89 139-258 184-282 (325)
46 PLN02365 2-oxoglutarate-depend 83.7 6.3 0.00014 37.3 8.6 91 139-257 150-250 (300)
47 PLN02758 oxidoreductase, 2OG-F 83.5 12 0.00026 36.4 10.7 88 139-256 212-310 (361)
48 PLN02750 oxidoreductase, 2OG-F 83.2 10 0.00022 36.6 10.0 91 139-258 194-294 (345)
49 COG3491 PcbC Isopenicillin N s 81.8 8.2 0.00018 36.8 8.4 92 136-257 172-273 (322)
50 PF06822 DUF1235: Protein of u 81.4 13 0.00028 34.7 9.3 107 116-257 32-138 (266)
51 PLN02515 naringenin,2-oxogluta 81.3 12 0.00026 36.4 9.7 91 139-258 196-296 (358)
52 PLN02254 gibberellin 3-beta-di 80.8 17 0.00038 35.3 10.7 88 139-256 211-308 (358)
53 PLN02947 oxidoreductase 80.8 15 0.00033 35.9 10.3 88 139-257 226-323 (374)
54 PTZ00273 oxidase reductase; Pr 78.4 25 0.00054 33.4 10.8 88 139-257 178-276 (320)
55 PLN02704 flavonol synthase 77.6 7.6 0.00016 37.3 7.0 88 140-258 201-298 (335)
56 PLN02393 leucoanthocyanidin di 76.7 22 0.00048 34.5 10.1 89 139-257 214-312 (362)
57 PLN02156 gibberellin 2-beta-di 74.7 33 0.00071 33.1 10.5 89 139-257 179-279 (335)
58 COG4340 Uncharacterized protei 74.6 7 0.00015 34.6 5.2 65 174-257 148-216 (226)
59 PLN03178 leucoanthocyanidin di 74.1 13 0.00029 36.1 7.7 89 139-258 212-310 (360)
60 PF10014 2OG-Fe_Oxy_2: 2OG-Fe 72.2 7.3 0.00016 34.5 5.0 99 116-244 70-179 (195)
61 KOG0143 Iron/ascorbate family 71.6 27 0.0006 33.4 9.1 86 139-255 177-274 (322)
62 PLN03002 oxidoreductase, 2OG-F 71.3 22 0.00047 34.2 8.4 92 139-257 183-285 (332)
63 PF14033 DUF4246: Protein of u 69.1 17 0.00037 37.1 7.5 89 152-256 364-478 (501)
64 KOG4176 Uncharacterized conser 68.9 77 0.0017 30.5 11.4 182 50-261 117-309 (323)
65 COG5285 Protein involved in bi 64.8 32 0.0007 32.6 7.7 97 150-259 132-233 (299)
66 PF02668 TauD: Taurine catabol 64.6 6.2 0.00013 35.4 3.0 38 208-253 219-258 (258)
67 PHA02985 hypothetical protein; 63.5 65 0.0014 30.1 9.3 104 116-256 39-142 (271)
68 cd00250 CAS_like Clavaminic ac 58.6 14 0.00031 33.7 4.3 40 208-255 218-260 (262)
69 KOG4459 Membrane-associated pr 39.7 5.6 0.00012 39.7 -1.6 74 168-259 364-437 (471)
70 COG2850 Uncharacterized conser 33.2 63 0.0014 31.6 4.4 40 116-159 100-140 (383)
71 PF11403 Yeast_MT: Yeast metal 31.6 21 0.00045 22.6 0.5 8 302-309 18-25 (40)
72 PRK09965 3-phenylpropionate di 29.6 87 0.0019 24.5 4.0 49 173-245 4-52 (106)
73 cd03528 Rieske_RO_ferredoxin R 29.3 76 0.0016 24.0 3.6 48 175-245 4-51 (98)
74 PRK09553 tauD taurine dioxygen 27.1 42 0.0009 31.2 2.0 31 153-189 96-126 (277)
75 PF08562 Crisp: Crisp; InterP 27.0 27 0.00058 24.7 0.5 31 271-309 19-49 (55)
76 cd03530 Rieske_NirD_small_Baci 25.2 1.1E+02 0.0024 23.2 3.9 48 176-245 5-52 (98)
77 cd03474 Rieske_T4moC Toluene-4 24.9 1.3E+02 0.0027 23.4 4.2 49 176-246 5-53 (108)
78 TIGR02410 carnitine_TMLD trime 23.7 96 0.0021 30.1 3.9 38 208-254 311-348 (362)
79 PF00642 zf-CCCH: Zinc finger 21.2 67 0.0014 18.8 1.4 16 275-290 3-18 (27)
80 TIGR02409 carnitine_bodg gamma 20.9 1.2E+02 0.0026 29.3 4.0 40 208-255 312-353 (366)
81 cd04338 Rieske_RO_Alpha_Tic55 20.0 1.6E+02 0.0036 24.1 4.1 70 169-260 15-86 (134)
82 PF00355 Rieske: Rieske [2Fe-2 20.0 1.6E+02 0.0035 22.1 3.8 29 209-246 26-54 (97)
No 1
>PLN00052 prolyl 4-hydroxylase; Provisional
Probab=100.00 E-value=7e-79 Score=572.16 Aligned_cols=272 Identities=65% Similarity=1.166 Sum_probs=251.1
Q ss_pred cCCCCCcCCceeEEeccCCCEEEEcCCCCHHHHHHHHHHHhcccccceeEeCCCCcccccceecccccccCCcchHHHHH
Q 021056 42 LKTSTTFDPSRVTQLSWNPRAFIYKGFLSDEECDHLIDLAKDKLETSMVADNESGKSIASEVRTSSGMFLSKAQDEIVAS 121 (318)
Q Consensus 42 ~~~~~~~~p~kve~ls~~P~i~ii~nfLs~~EC~~Li~~a~~~l~~s~v~~~~~g~~~~~~~R~s~~~~l~~~~~~v~~~ 121 (318)
...+..++|.|||+||++|+||+|+||||++||++||+++++++++|+++++.+|+...+++|+|+++|++..+++++++
T Consensus 36 ~~~~~~~~~~kve~lS~~P~i~~~~nfLs~~Ecd~Li~la~~~l~~S~v~~~~~g~~~~s~~RTS~~~~l~~~~dpvv~~ 115 (310)
T PLN00052 36 VAAAPPFNASRVKAVSWQPRIFVYKGFLSDAECDHLVKLAKKKIQRSMVADNKSGKSVMSEVRTSSGMFLDKRQDPVVSR 115 (310)
T ss_pred ccCCCCcCCceEEEecCCCCEEEECCcCCHHHHHHHHHhcccccccceeecCCCCccccCCCEEecceeecCCCCHHHHH
Confidence 33455789999999999999999999999999999999999999999998877777778899999999998877999999
Q ss_pred HHHHHHHhhCCCCCCCccceEEecCCCCCcccccCCCCccccccCCCceEEEEEEEecCCCCCcceeecCCcc--cccCC
Q 021056 122 IEARIAAWTFLPPENGEAMQILHYEHGQKYEPHFDFFRDKMNQQLGGHRIATVLMYLSHVEKGGETVFPNSEV--SQSRD 199 (318)
Q Consensus 122 i~~Ri~~~~glp~~~~E~~qv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnD~~eGGeT~Fp~~~~--~~~~~ 199 (318)
|++||++++++|.++.|++||+||++||+|++|+|++.+..+...+++|++|+|+||||+++||||+||..+. .++++
T Consensus 116 I~~Ria~~t~lp~~~~E~lQVlrY~~Gq~Y~~H~D~~~~~~~~~~gg~R~aTvL~YLndv~~GGeT~FP~~~~~~~~~~~ 195 (310)
T PLN00052 116 IEERIAAWTFLPEENAENIQILRYEHGQKYEPHFDYFHDKINQALGGHRYATVLMYLSTVDKGGETVFPNAEGWENQPKD 195 (310)
T ss_pred HHHHHHHHhCCCcccCcceEEEecCCCCCCCCCCCccccccccccCCceeEEEEEEeccCCCCCceecCCcccccccccc
Confidence 9999999999999999999999999999999999999765444567899999999999999999999999854 45677
Q ss_pred CCcchhcCCCeEEeCCCCCEEEEeecCCCCCCCCCCCcccccccccceEEEEeeEeeccCCCCCCC-CCCCCcccCCcCh
Q 021056 200 GNWSECARRGYAVKPMKGDALLFFSLHPDASTDSTSLHGSCPVIEGEKWSATKWIHVRNFDKPEKE-PEDDDCVDEDLNC 278 (318)
Q Consensus 200 ~~~~~c~~~~~~VkP~~G~allF~n~~~~g~~d~~~lH~g~PV~~G~K~i~~~Wi~~~~~~~~~~~-~~~~~C~d~~~~C 278 (318)
+.|++|++.+++|+|++|+||||+|+++||+.|++++|+||||++|+||++|+|||.+++..+... .++..|.|.+++|
T Consensus 196 ~~~s~c~~~gl~VkPkkG~ALlF~nl~~dG~~D~~SlHagcPVi~G~Kw~atkWi~~~~~~~~~~~~~~~~~C~d~~~~C 275 (310)
T PLN00052 196 DTFSECAHKGLAVKPVKGDAVLFFSLHIDGVPDPLSLHGSCPVIEGEKWSAPKWIHIRSYEHPPVVPKDTEGCADKSAHC 275 (310)
T ss_pred cchhhhhcCCeEeccCcceEEEEeccCCCCCCCcccccCCCeeecCeEEEEEEeeecccccCCCcCCccCCCCcCCcccC
Confidence 889999999999999999999999999999999999999999999999999999999999776443 4567999999999
Q ss_pred HhHhhcCcCccCccccccccCCcchhhhhcCcCCC
Q 021056 279 VVWAKAGECKKNPLYMVGSKSSRGYCRKSCKVCKP 313 (318)
Q Consensus 279 ~~wa~~geC~~np~~m~~~~~~~~~C~~sC~~C~~ 313 (318)
+.||+.|||++||.||+|+++.+++|+|||+.|..
T Consensus 276 ~~Wa~~GeC~~Np~yM~g~~~~~~~C~~SC~~C~~ 310 (310)
T PLN00052 276 AEWAAAGECEKNPVYMVGAEGAPGNCRKSCGVCDS 310 (310)
T ss_pred hhHhhCCccccChHhhcCCCCCCChhhccccccCC
Confidence 99999999999999999999999999999999973
No 2
>KOG1591 consensus Prolyl 4-hydroxylase alpha subunit [Amino acid transport and metabolism]
Probab=100.00 E-value=3.6e-51 Score=380.21 Aligned_cols=203 Identities=57% Similarity=0.959 Sum_probs=185.0
Q ss_pred CCCCcCCceeEEeccCCCEEEEcCCCCHHHHHHHHHHHhcccccceeE-eCCCCcccccceecccccccCCcchHHHHHH
Q 021056 44 TSTTFDPSRVTQLSWNPRAFIYKGFLSDEECDHLIDLAKDKLETSMVA-DNESGKSIASEVRTSSGMFLSKAQDEIVASI 122 (318)
Q Consensus 44 ~~~~~~p~kve~ls~~P~i~ii~nfLs~~EC~~Li~~a~~~l~~s~v~-~~~~g~~~~~~~R~s~~~~l~~~~~~v~~~i 122 (318)
++..++|.|+|+|||+|+|++|+||||++||++|++++++++++++|. +..+|....+.+|+|+++|+....++++++|
T Consensus 81 ~~~~~ap~k~E~lsw~P~~~~yhd~ls~~e~d~l~~lak~~l~~stv~~~~~~~~~~~~~~R~S~~t~l~~~~~~~~~~i 160 (289)
T KOG1591|consen 81 PFLRLAPVKLEELSWDPRVVLYHDFLSDEECDHLISLAKPKLERSTVVADKGTGHSTTSAVRTSSGTFLPDGASPVVSRI 160 (289)
T ss_pred cceeecchhhhhcccCCceEeehhcCCHHHHHHHHHhhhhhhhceeeeccCCcccccceeeEecceeEecCCCCHHHHHH
Confidence 567889999999999999999999999999999999999999999984 5545666667789999999998778999999
Q ss_pred HHHHHHhhCCCCCCCccceEEecCCCCCcccccCCCCc--c--ccccCCCceEEEEEEEecCCCCCcceeecCCcccccC
Q 021056 123 EARIAAWTFLPPENGEAMQILHYEHGQKYEPHFDFFRD--K--MNQQLGGHRIATVLMYLSHVEKGGETVFPNSEVSQSR 198 (318)
Q Consensus 123 ~~Ri~~~~glp~~~~E~~qv~rY~~G~~y~~H~D~~~~--~--~~~~~~~~R~~T~liYLnD~~eGGeT~Fp~~~~~~~~ 198 (318)
++||+++++++.++.|.+||++|+.||+|.+|+|++.+ . .+...+++|++|+|+||+|+++||+|+||.+..
T Consensus 161 ~~ri~~~T~l~~e~~E~lqVlnYg~Gg~Y~~H~D~~~~~~~~~~~~~~~g~RiaT~l~yls~v~~GG~TvFP~~~~---- 236 (289)
T KOG1591|consen 161 EQRIADLTGLPVENGESLQVLNYGLGGHYEPHYDYFLPEEDETFNGLNGGNRIATVLMYLSDVEQGGETVFPNLGM---- 236 (289)
T ss_pred HHHHHhccCCCcccCccceEEEecCCccccccccccccccchhhhhcccCCcceeEEEEecccCCCCcccCCCCCC----
Confidence 99999999999999999999999999999999999953 1 123557899999999999999999999999731
Q ss_pred CCCcchhcCCCeEEeCCCCCEEEEeecCCCCCCCCCCCcccccccccceEEEEeeEeeccCC
Q 021056 199 DGNWSECARRGYAVKPMKGDALLFFSLHPDASTDSTSLHGSCPVIEGEKWSATKWIHVRNFD 260 (318)
Q Consensus 199 ~~~~~~c~~~~~~VkP~~G~allF~n~~~~g~~d~~~lH~g~PV~~G~K~i~~~Wi~~~~~~ 260 (318)
.++|+|++|+|++|+|++++|..|+++.|++|||+.|+||++++|||.+.+.
T Consensus 237 ----------~~~V~PkkGdal~wfnl~~~~~~d~~S~H~~CPv~~G~kw~~~~wi~~~~~~ 288 (289)
T KOG1591|consen 237 ----------KPAVKPKKGDALFWFNLHPDGEGDPRSLHGGCPVLVGSKWIATKWIHEKNQE 288 (289)
T ss_pred ----------cccccCCCCCeeEEEEccCCCCCCccccccCCCeeeccceeeeeeeeecccc
Confidence 2499999999999999999999999999999999999999999999998754
No 3
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues. Mammalian enzymes catalyse hydroxylation of collagen, for example. Prokaryotic enzymes might catalyse hydroxylation of antibiotic peptides. These are 2-oxoglutarate-dependent dioxygenases, requiring 2-oxoglutarate and dioxygen as cosubstrates and ferrous iron as a cofactor.
Probab=100.00 E-value=4.7e-36 Score=261.98 Aligned_cols=174 Identities=39% Similarity=0.657 Sum_probs=150.6
Q ss_pred CCEEEEcCCCCHHHHHHHHHHHhcccccceeEeCCCCcccccceecccccccCCcc-hHHHHHHHHHHHHhhCCC---CC
Q 021056 60 PRAFIYKGFLSDEECDHLIDLAKDKLETSMVADNESGKSIASEVRTSSGMFLSKAQ-DEIVASIEARIAAWTFLP---PE 135 (318)
Q Consensus 60 P~i~ii~nfLs~~EC~~Li~~a~~~l~~s~v~~~~~g~~~~~~~R~s~~~~l~~~~-~~v~~~i~~Ri~~~~glp---~~ 135 (318)
|+|++++||||++||+.||+++++.+.++.+..+..+....+++|+|...|+...+ +++++.|++||+++++++ ..
T Consensus 1 P~i~~~~~~ls~~ec~~li~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~l~~~~~~~~~~~l~~~i~~~~~~~~~~~~ 80 (178)
T smart00702 1 PGVVVFHDFLSPAECQKLLEEAEPLGWRGEVTRGDTNPNHDSKYRQSNGTWLELLKGDLVIERIRQRLADFLGLLRGLPL 80 (178)
T ss_pred CcEEEECCCCCHHHHHHHHHHhhhhcccceeecCCCCccccCCCEeecceecCCCCCCHHHHHHHHHHHHHHCCCchhhc
Confidence 78999999999999999999999977778777554332255789999999998754 789999999999999998 68
Q ss_pred CCccceEEecCCCCCcccccCCCCccccccCCCceEEEEEEEecCCCCCcceeecCCcccccCCCCcchhcCCCeEEeCC
Q 021056 136 NGEAMQILHYEHGQKYEPHFDFFRDKMNQQLGGHRIATVLMYLSHVEKGGETVFPNSEVSQSRDGNWSECARRGYAVKPM 215 (318)
Q Consensus 136 ~~E~~qv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnD~~eGGeT~Fp~~~~~~~~~~~~~~c~~~~~~VkP~ 215 (318)
..|++|++||.+|++|.+|+|...... .++|.+|+++||||+++||+|.|+.... .....|+|+
T Consensus 81 ~~~~~~~~~Y~~g~~~~~H~D~~~~~~----~~~r~~T~~~yLn~~~~GG~~~f~~~~~------------~~~~~v~P~ 144 (178)
T smart00702 81 SAEDAQVARYGPGGHYGPHVDNFEDDE----NGDRIATFLLYLNDVEEGGELVFPGLGL------------MVCATVKPK 144 (178)
T ss_pred cCcceEEEEECCCCcccCcCCCCCCCC----CCCeEEEEEEEeccCCcCceEEecCCCC------------ccceEEeCC
Confidence 899999999999999999999986531 2689999999999999999999998631 125699999
Q ss_pred CCCEEEEeecCCCCCCCCCCCcccccccccceEEEEeeEe
Q 021056 216 KGDALLFFSLHPDASTDSTSLHGSCPVIEGEKWSATKWIH 255 (318)
Q Consensus 216 ~G~allF~n~~~~g~~d~~~lH~g~PV~~G~K~i~~~Wi~ 255 (318)
+|++|+|++.. ++++|+++||.+|+||++++|+|
T Consensus 145 ~G~~v~f~~~~------~~~~H~v~pv~~G~r~~~~~W~~ 178 (178)
T smart00702 145 KGDLLFFPSGR------GRSLHGVCPVTRGSRWAITGWIR 178 (178)
T ss_pred CCcEEEEeCCC------CCccccCCcceeCCEEEEEEEEC
Confidence 99999998742 27999999999999999999996
No 4
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional
Probab=99.95 E-value=8.6e-28 Score=216.88 Aligned_cols=166 Identities=23% Similarity=0.260 Sum_probs=126.7
Q ss_pred EEEEcCCCCHHHHHHHHHHHhc-ccccceeEeCCCCcccccceecccccccCCcchHHHHHHHHHHHHhh---------C
Q 021056 62 AFIYKGFLSDEECDHLIDLAKD-KLETSMVADNESGKSIASEVRTSSGMFLSKAQDEIVASIEARIAAWT---------F 131 (318)
Q Consensus 62 i~ii~nfLs~~EC~~Li~~a~~-~l~~s~v~~~~~g~~~~~~~R~s~~~~l~~~~~~v~~~i~~Ri~~~~---------g 131 (318)
|++|+||||++||++|++..+. .+.+..+. .....+++|++..+-. ++++.+.|.++|.... .
T Consensus 2 i~~I~~vLs~eec~~~~~~le~~~~~dg~~t----aG~~~~~vKnN~ql~~---d~~~a~~l~~~i~~~L~~~~l~~sa~ 74 (226)
T PRK05467 2 LLHIPDVLSPEEVAQIRELLDAAEWVDGRVT----AGAQAAQVKNNQQLPE---DSPLARELGNLILDALTRNPLFFSAA 74 (226)
T ss_pred eeeecccCCHHHHHHHHHHHHhcCCccCCcC----cCccchhcccccccCC---CCHHHHHHHHHHHHHHhcCchhhhhc
Confidence 6899999999999999999876 34433332 1223467888876543 3567777888877643 2
Q ss_pred CCCCCCccceEEecCCCCCcccccCCCCcccc-ccCCCceEEEEEEEecCCC--CCcceeecCCcccccCCCCcchhcCC
Q 021056 132 LPPENGEAMQILHYEHGQKYEPHFDFFRDKMN-QQLGGHRIATVLMYLSHVE--KGGETVFPNSEVSQSRDGNWSECARR 208 (318)
Q Consensus 132 lp~~~~E~~qv~rY~~G~~y~~H~D~~~~~~~-~~~~~~R~~T~liYLnD~~--eGGeT~Fp~~~~~~~~~~~~~~c~~~ 208 (318)
+|... .+++|.||.+|++|++|+|....... .....+|.+|+++||||++ +||||+|+... .
T Consensus 75 lp~~i-~~~~f~rY~~G~~y~~H~D~~~~~~~~~~~~~rs~lS~~lyLnd~~~yeGGEl~~~~~~--------------g 139 (226)
T PRK05467 75 LPRKI-HPPLFNRYEGGMSYGFHVDNAVRSLPGTGGRVRTDLSATLFLSDPDDYDGGELVIEDTY--------------G 139 (226)
T ss_pred ccccc-ccceEEEECCCCccCccccCCcccCCCCCcceeEEEEEEEEeCCCCCCcCCceEEecCC--------------C
Confidence 43333 57899999999999999999865311 1112356899999999874 89999998753 2
Q ss_pred CeEEeCCCCCEEEEeecCCCCCCCCCCCcccccccccceEEEEeeEeecc
Q 021056 209 GYAVKPMKGDALLFFSLHPDASTDSTSLHGSCPVIEGEKWSATKWIHVRN 258 (318)
Q Consensus 209 ~~~VkP~~G~allF~n~~~~g~~d~~~lH~g~PV~~G~K~i~~~Wi~~~~ 258 (318)
...|+|++|++|+|++ .++|+|+||++|+||+++.|++..=
T Consensus 140 ~~~Vkp~aG~~vlfps---------~~lH~v~pVt~G~R~~~~~Wi~S~v 180 (226)
T PRK05467 140 EHRVKLPAGDLVLYPS---------TSLHRVTPVTRGVRVASFFWIQSLV 180 (226)
T ss_pred cEEEecCCCeEEEECC---------CCceeeeeccCccEEEEEecHHHHc
Confidence 5789999999999986 6999999999999999999996543
No 5
>PHA02869 C4L/C10L-like gene family protein; Provisional
Probab=99.72 E-value=4.4e-17 Score=155.06 Aligned_cols=141 Identities=23% Similarity=0.260 Sum_probs=111.9
Q ss_pred cccceeEeCCCCc-ccccceecccccccCCcchHHHHHHHHHHHHhh-----CC--CCCCCccceEEecCCCCCcccccC
Q 021056 85 LETSMVADNESGK-SIASEVRTSSGMFLSKAQDEIVASIEARIAAWT-----FL--PPENGEAMQILHYEHGQKYEPHFD 156 (318)
Q Consensus 85 l~~s~v~~~~~g~-~~~~~~R~s~~~~l~~~~~~v~~~i~~Ri~~~~-----gl--p~~~~E~~qv~rY~~G~~y~~H~D 156 (318)
+.+|.+.+..+|. -.....|.|.++.+. ..+.+.|++||+.+. ++ ..+.+|+++++||.+||+|++|.|
T Consensus 45 ~~~s~i~~~~~g~e~~~~~~~ksKqii~e---~~La~~L~erlr~lLp~~lk~~v~~V~lnerirfyrY~kGq~F~~H~D 121 (418)
T PHA02869 45 CEDSKIFFPEKRTELLSIKDRKSKQIVFE---NSLNDDLLKKLHALIYDELSTVVDSVTVENTVTLIMYEKGDYFARHRD 121 (418)
T ss_pred cccceeeccccCceeEeeccccceeEEec---hHHHHHHHHHHHHhhhHHhhCccceEEEcceEEEEEECCCCccccccc
Confidence 4677787766663 344556889887765 467777888877653 32 346789999999999999999999
Q ss_pred CCCccccccCCCceEEEEEEEecCCCCCcceeecCCcccccCCCCcchhcCCCeEEeCCCCCEEEEeecCCCCCCCCCCC
Q 021056 157 FFRDKMNQQLGGHRIATVLMYLSHVEKGGETVFPNSEVSQSRDGNWSECARRGYAVKPMKGDALLFFSLHPDASTDSTSL 236 (318)
Q Consensus 157 ~~~~~~~~~~~~~R~~T~liYLnD~~eGGeT~Fp~~~~~~~~~~~~~~c~~~~~~VkP~~G~allF~n~~~~g~~d~~~l 236 (318)
+.... .+....+|+|+|||++++||||.|.... ...|.|+.| |+| +....
T Consensus 122 g~~~r----s~e~s~~tLLLYLNd~~~GGET~f~~~~---------------~~sI~pksg--LLF---------dh~l~ 171 (418)
T PHA02869 122 FSTVF----SKNIICVHLLLYLEQPETGGETVIYIDN---------------NTSVKLKTD--HLF---------DKTIE 171 (418)
T ss_pred Cceec----CCCEEEEEEEEEEeccCCCCceEEEeCC---------------CceEecCCC--eEe---------ccccc
Confidence 87642 2445689999999999999999999742 578999999 888 45899
Q ss_pred cccccccccceEEEEeeEeecc
Q 021056 237 HGSCPVIEGEKWSATKWIHVRN 258 (318)
Q Consensus 237 H~g~PV~~G~K~i~~~Wi~~~~ 258 (318)
|+|.+|.+|.||+|+.-+..+-
T Consensus 172 Heg~~V~sG~KyVartDVmyr~ 193 (418)
T PHA02869 172 HESITVESGRKCVALFDVLLEK 193 (418)
T ss_pred cCCcEeecCeEEEEEEEEEEEe
Confidence 9999999999999999775543
No 6
>PHA02813 hypothetical protein; Provisional
Probab=99.71 E-value=6.5e-17 Score=152.00 Aligned_cols=138 Identities=24% Similarity=0.285 Sum_probs=106.5
Q ss_pred ccccceeEeCCCC-cccccceecccccccCCcchHHHHHHHHHHHHh-----hCCC----CCCCccceEEecCCCCCccc
Q 021056 84 KLETSMVADNESG-KSIASEVRTSSGMFLSKAQDEIVASIEARIAAW-----TFLP----PENGEAMQILHYEHGQKYEP 153 (318)
Q Consensus 84 ~l~~s~v~~~~~g-~~~~~~~R~s~~~~l~~~~~~v~~~i~~Ri~~~-----~glp----~~~~E~~qv~rY~~G~~y~~ 153 (318)
.++.|.+.+..+| +....++|+++++.++.. +.|++||+.+ .+.+ .+.+|+++++||.+||+|++
T Consensus 35 ~~~~s~i~~~~~~ge~l~~~iRnNkrviid~~-----~~L~erIr~~Lp~~l~~~~lv~~V~vnerirfyrY~kGq~F~~ 109 (354)
T PHA02813 35 IWEESKVFDHEKGGEVINTNERQCKQYIIRGL-----DDIFKVIRKKLLLSFEFPQKISDIILDNTITLIKYEKGDFFNN 109 (354)
T ss_pred CccccceeccccCceEEccccccceEEEEcCH-----HHHHHHHHHhhHHHhcCCccceeEEEcceEEEEEECCCcccCc
Confidence 4678888775544 456788999999988742 5556666553 2333 36789999999999999999
Q ss_pred ccCCCCccccccCCCceEEEEEEEecCCCCCcceeecCCcccccCCCCcchhcCCCeEEeCCCCCEEEEeecCCCCCCCC
Q 021056 154 HFDFFRDKMNQQLGGHRIATVLMYLSHVEKGGETVFPNSEVSQSRDGNWSECARRGYAVKPMKGDALLFFSLHPDASTDS 233 (318)
Q Consensus 154 H~D~~~~~~~~~~~~~R~~T~liYLnD~~eGGeT~Fp~~~~~~~~~~~~~~c~~~~~~VkP~~G~allF~n~~~~g~~d~ 233 (318)
|.|+..... .....+|+|+|||++++||||.|...+ ...|. .|++|+|. .
T Consensus 110 H~Dg~~~r~----k~~s~~tLLLYLN~~~~GGeT~f~~~~---------------~tsI~--~g~dlLFd---------h 159 (354)
T PHA02813 110 HRDFIHFKS----KNCYCYHLVLYLNNTSKGGNTNIHIKD---------------NTIFS--TKNDVLFD---------K 159 (354)
T ss_pred ccCCceeec----CCceEEEEEEEEeccCCCCceEEEcCC---------------CceEe--ecceEEEe---------c
Confidence 999865421 123899999999999999999998752 12566 99999994 5
Q ss_pred CCCcccccccccceEEEEeeEee
Q 021056 234 TSLHGSCPVIEGEKWSATKWIHV 256 (318)
Q Consensus 234 ~~lH~g~PV~~G~K~i~~~Wi~~ 256 (318)
...|+|.+|.+|.||+|..=+-.
T Consensus 160 ~l~Heg~~V~sG~KyVa~~~V~l 182 (354)
T PHA02813 160 TLNHSSDIITDGEKNIALINVVI 182 (354)
T ss_pred ccccCCcEeccCeEEEEEEEEEE
Confidence 89999999999999988765433
No 7
>COG3128 PiuC Uncharacterized iron-regulated protein [Function unknown]
Probab=99.64 E-value=2.2e-15 Score=129.75 Aligned_cols=166 Identities=20% Similarity=0.270 Sum_probs=114.4
Q ss_pred CEEEEcCCCCHHHHHHHHHHHhcccccceeEeCC-CCcccccceecccccccCCcchHHHHHHHHHHHH-------hhCC
Q 021056 61 RAFIYKGFLSDEECDHLIDLAKDKLETSMVADNE-SGKSIASEVRTSSGMFLSKAQDEIVASIEARIAA-------WTFL 132 (318)
Q Consensus 61 ~i~ii~nfLs~~EC~~Li~~a~~~l~~s~v~~~~-~g~~~~~~~R~s~~~~l~~~~~~v~~~i~~Ri~~-------~~gl 132 (318)
..+.|+.+||+++|.+|.+..+. +.-+++. +.+..-..+|++..+-.+ .+..+.+.+-|.+ +++.
T Consensus 3 m~lhIp~VLs~a~va~iRa~l~~----A~w~dGrat~g~q~a~vk~n~qlp~~---s~l~~~vg~~il~al~~~plff~a 75 (229)
T COG3128 3 MMLHIPEVLSEAQVARIRAALEQ----AEWVDGRATQGPQGAQVKNNLQLPQD---SALARELGNEILQALTAHPLFFAA 75 (229)
T ss_pred eEEechhhCCHHHHHHHHHHHhh----ccccccccccCcchhhhhccccCCcc---cHHHHHHHHHHHHHHHhchhHHHh
Confidence 45678999999999999887553 3322221 112223445655543322 3344444333322 2222
Q ss_pred CCC-CCccceEEecCCCCCcccccCCCCccccccCCCce---EEEEEEEecCCC--CCcceeecCCcccccCCCCcchhc
Q 021056 133 PPE-NGEAMQILHYEHGQKYEPHFDFFRDKMNQQLGGHR---IATVLMYLSHVE--KGGETVFPNSEVSQSRDGNWSECA 206 (318)
Q Consensus 133 p~~-~~E~~qv~rY~~G~~y~~H~D~~~~~~~~~~~~~R---~~T~liYLnD~~--eGGeT~Fp~~~~~~~~~~~~~~c~ 206 (318)
.+. ..++.++.+|..|++|.+|.|+......+.. +.| .++..+||+|++ +|||++..+.-
T Consensus 76 ALp~t~~~P~Fn~Y~eg~~f~fHvDgavr~~hp~~-~~~lrtdls~tlfl~DPedYdGGeLVv~dtY------------- 141 (229)
T COG3128 76 ALPRTCLPPLFNRYQEGDFFGFHVDGAVRSIHPGS-GFRLRTDLSCTLFLSDPEDYDGGELVVNDTY------------- 141 (229)
T ss_pred hcccccCCchhhhccCCCcccccccCcccccCCCC-CceeEeeeeeeeecCCccccCCceEEEeccc-------------
Confidence 222 4568899999999999999999765422222 224 456778999986 79999997753
Q ss_pred CCCeEEeCCCCCEEEEeecCCCCCCCCCCCcccccccccceEEEEeeEeec
Q 021056 207 RRGYAVKPMKGDALLFFSLHPDASTDSTSLHGSCPVIEGEKWSATKWIHVR 257 (318)
Q Consensus 207 ~~~~~VkP~~G~allF~n~~~~g~~d~~~lH~g~PV~~G~K~i~~~Wi~~~ 257 (318)
+...||-.+|++|+|++ .++|++.||++|+++....|++..
T Consensus 142 -g~h~VklPAGdLVlypS---------tSlH~VtPVTRg~R~asffW~qsl 182 (229)
T COG3128 142 -GNHRVKLPAGDLVLYPS---------TSLHEVTPVTRGERFASFFWIQSL 182 (229)
T ss_pred -cceEEeccCCCEEEccc---------ccceeccccccCceEEEeeehHHH
Confidence 26889999999999987 799999999999999999999654
No 8
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A ....
Probab=99.61 E-value=1.3e-15 Score=120.44 Aligned_cols=91 Identities=40% Similarity=0.624 Sum_probs=69.7
Q ss_pred ceEEecCCCCCcccccCCCCccccccCCCceEEEEEEEecCCC---CCcceeecCCcccccCCCCcchhcCCCeEEe---
Q 021056 140 MQILHYEHGQKYEPHFDFFRDKMNQQLGGHRIATVLMYLSHVE---KGGETVFPNSEVSQSRDGNWSECARRGYAVK--- 213 (318)
Q Consensus 140 ~qv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnD~~---eGGeT~Fp~~~~~~~~~~~~~~c~~~~~~Vk--- 213 (318)
+|+.+|.+|++|.||.|... ...+.+|+|+|||+++ +||+|+|.... . .+ .....+.
T Consensus 1 ~~~~~y~~G~~~~~H~D~~~-------~~~~~~t~llyL~~~~~~~~GG~l~~~~~~-~--~~-------~~~~~~~~~~ 63 (100)
T PF13640_consen 1 MQLNRYPPGGFFGPHTDNSY-------DPHRRVTLLLYLNDPEWEFEGGELEFYPSK-D--SD-------DVSREVEDFD 63 (100)
T ss_dssp -EEEEEETTEEEEEEESSSC-------CCSEEEEEEEESS-CS-HCEE--EEETTTS----TS-------STCEEEGGGS
T ss_pred CEEEEECcCCEEeeeECCCC-------CCcceEEEEEEECCCCcccCCCEEEEeccc-c--CC-------CcceEEEecc
Confidence 48999999999999999854 2479999999999876 99999998642 0 00 0123333
Q ss_pred --CCCCCEEEEeecCCCCCCCCCCCcccccc-cccceEEEEeeEe
Q 021056 214 --PMKGDALLFFSLHPDASTDSTSLHGSCPV-IEGEKWSATKWIH 255 (318)
Q Consensus 214 --P~~G~allF~n~~~~g~~d~~~lH~g~PV-~~G~K~i~~~Wi~ 255 (318)
|+.|++|+|.+ ..++|++.|| ..|.|++++.|++
T Consensus 64 ~~p~~g~~v~F~~--------~~~~H~v~~v~~~~~R~~l~~~~~ 100 (100)
T PF13640_consen 64 IVPKPGRLVIFPS--------DNSLHGVTPVGEGGRRYSLTFWFH 100 (100)
T ss_dssp EE-BTTEEEEEES--------CTCEEEEEEE-EESEEEEEEEEEE
T ss_pred ccCCCCEEEEEeC--------CCCeecCcccCCCCCEEEEEEEEC
Confidence 99999999986 3799999999 8999999999986
No 9
>smart00254 ShKT ShK toxin domain. ShK toxin domain
Probab=98.96 E-value=1.8e-10 Score=73.19 Aligned_cols=33 Identities=48% Similarity=1.237 Sum_probs=31.5
Q ss_pred cccCCcChHhHhhcCcCccCccccccccCCcchhhhhcCcC
Q 021056 271 CVDEDLNCVVWAKAGECKKNPLYMVGSKSSRGYCRKSCKVC 311 (318)
Q Consensus 271 C~d~~~~C~~wa~~geC~~np~~m~~~~~~~~~C~~sC~~C 311 (318)
|.|.+.+|+.|| .|+| +||.||. .+|+||||+|
T Consensus 1 C~D~~~~C~~wa-~~~C-~~~~~~~------~~C~ktCg~C 33 (33)
T smart00254 1 CVDRHPDCAAWA-KGFC-TNPFYMK------SNCPKTCGFC 33 (33)
T ss_pred CCCCcccCcchh-hCcC-CChhHHH------hhhhhhcccC
Confidence 889999999999 9999 8999997 9999999998
No 10
>KOG3710 consensus EGL-Nine (EGLN) protein [Signal transduction mechanisms]
Probab=98.88 E-value=3.1e-08 Score=88.37 Aligned_cols=168 Identities=19% Similarity=0.331 Sum_probs=110.9
Q ss_pred CEEEEcCCCCHHHHHHHHHHHhc-----ccccceeEeCCCCcccccceecccccccCCcch---HH---HHHHHHHHHHh
Q 021056 61 RAFIYKGFLSDEECDHLIDLAKD-----KLETSMVADNESGKSIASEVRTSSGMFLSKAQD---EI---VASIEARIAAW 129 (318)
Q Consensus 61 ~i~ii~nfLs~~EC~~Li~~a~~-----~l~~s~v~~~~~g~~~~~~~R~s~~~~l~~~~~---~v---~~~i~~Ri~~~ 129 (318)
.+-+++|||-.+-=..+.+..+. .+.+..++.++. ...+++|.....|+...+. .+ ...|..-|...
T Consensus 54 g~~vvd~flg~~~g~~v~~ev~~l~~~G~f~dgql~~~~~--~~~k~iRgd~i~wi~G~e~gc~~i~~L~s~~d~~i~h~ 131 (280)
T KOG3710|consen 54 GICVVDNFLGSETGKFILKEVEALYETGAFRDGQLVSPDA--FHSKDIRGDKITWVGGNEPGCETIMLLPSPIDSVILHC 131 (280)
T ss_pred ceEEEechhhHHHHHHHHHHHHHHHhccCccCceeccCcC--CcchhhccCCceEecCCCCCccceeeecccchhhhhhh
Confidence 56789999998877777666654 233333433322 2335889999999975431 00 11111111111
Q ss_pred hC-CCC--CCCccceEEecC-CCCCcccccCCCCccccccCCCceEEEEEEEecC---CC-CCcce-eecCCcccccCCC
Q 021056 130 TF-LPP--ENGEAMQILHYE-HGQKYEPHFDFFRDKMNQQLGGHRIATVLMYLSH---VE-KGGET-VFPNSEVSQSRDG 200 (318)
Q Consensus 130 ~g-lp~--~~~E~~qv~rY~-~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnD---~~-eGGeT-~Fp~~~~~~~~~~ 200 (318)
.+ +.. ..-..-.|+.|. .|-.|..|+|..+ +..|-+|.+.|||. +. .||-+ .||....
T Consensus 132 ~~r~~~~~~gRtkAMVAcYPGNGtgYVrHVDNP~-------gDGRcITcIYYlNqNWD~kv~Gg~Lri~pe~~~------ 198 (280)
T KOG3710|consen 132 NGRLGSYIIGRTKAMVACYPGNGTGYVRHVDNPH-------GDGRCITCIYYLNQNWDVKVHGGILRIFPEGST------ 198 (280)
T ss_pred ccccccccccceeEEEEEecCCCceeeEeccCCC-------CCceEEEEEEEcccCcceeeccceeEeccCCCC------
Confidence 00 111 112345688896 5779999999754 45799999999994 33 45544 5777532
Q ss_pred CcchhcCCCeEEeCCCCCEEEEeecCCCCCCCCCCCcccccccccceEEEEeeEeecc
Q 021056 201 NWSECARRGYAVKPMKGDALLFFSLHPDASTDSTSLHGSCPVIEGEKWSATKWIHVRN 258 (318)
Q Consensus 201 ~~~~c~~~~~~VkP~~G~allF~n~~~~g~~d~~~lH~g~PV~~G~K~i~~~Wi~~~~ 258 (318)
.-..|.|+-+..|||+| |.+-.|++.|+.. +||.|+.|+-...
T Consensus 199 -------~~adieP~fdrLlffwS-------drrnPhev~Pa~~-tryaitvwyfda~ 241 (280)
T KOG3710|consen 199 -------TFADIEPKFDRLLFFWS-------DRRNPHEVQPAYA-TRYAITVWYFDAK 241 (280)
T ss_pred -------cccccCcCCCeEEEEEe-------cCCCccccccccc-cceEEEEEEeccc
Confidence 24679999999999999 7789999999998 7999999995543
No 11
>PF01549 ShK: ShK domain-like; InterPro: IPR003582 The ShK toxin domain is found in metridin, a toxin from Metridium senile (brown sea anemone) and in ShK, a structurally defined polypeptide from the sea anemone Stoichactis helianthus (Stichodactyla helianthus) (Caribbean sea anemone). ShK is a powerful inhibitor of T lymphocyte voltage-gated potassium channels, in particular Kv1.3 []. It has been proposed that structural analogues may have use as an immunosuppressants for the prevention of graft rejection and for the treatment of autoimmune diseases []. The ShK toxin domain, is also found in one or more copies as a C-terminal domain in the metallopeptidases of Caenorhabditis elegans. The metallopeptidases belonging to MEROPS peptidase families: M10A, M12A and M14A. The majority belonging to M12A, the astacin/adamalysin family of metallopeptidases.; PDB: 1BGK_A 2K72_A.
Probab=98.64 E-value=5.4e-09 Score=68.08 Aligned_cols=36 Identities=36% Similarity=0.912 Sum_probs=28.8
Q ss_pred CcccCCcChHhHhhcCcCccCc--cccccccCCcchhhhhcCcC
Q 021056 270 DCVDEDLNCVVWAKAGECKKNP--LYMVGSKSSRGYCRKSCKVC 311 (318)
Q Consensus 270 ~C~d~~~~C~~wa~~geC~~np--~~m~~~~~~~~~C~~sC~~C 311 (318)
.|.|.+..|+.|+..|.|.++. .||. .+|++|||+|
T Consensus 1 ~C~D~~~~C~~~~~~g~C~~~~~~~~m~------~~C~~tCg~C 38 (38)
T PF01549_consen 1 NCRDKNPNCATWANNGFCTNPFYQDFMR------KNCPKTCGFC 38 (38)
T ss_dssp ---S-HCHHHHHHCCTTTTTSH--HHHH------CCTTTTTT--
T ss_pred CCCCchhhhhhhhhhhhhcccccchhhh------chhcccCcCC
Confidence 4999999999999999999887 8998 9999999998
No 12
>PF13661 2OG-FeII_Oxy_4: 2OG-Fe(II) oxygenase superfamily
Probab=98.56 E-value=1e-07 Score=70.91 Aligned_cols=53 Identities=26% Similarity=0.411 Sum_probs=44.0
Q ss_pred CCccceEEecCCCCCcccccCCCCccccccCCCceEEEEEEEec----CCCCCcceeecCC
Q 021056 136 NGEAMQILHYEHGQKYEPHFDFFRDKMNQQLGGHRIATVLMYLS----HVEKGGETVFPNS 192 (318)
Q Consensus 136 ~~E~~qv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLn----D~~eGGeT~Fp~~ 192 (318)
..+.+++++|..|++|++|+|..... .+.+|.+|+||||| +..+||++.|...
T Consensus 9 ~~~~~~~~~~~~g~~~~~H~D~~~~~----~~~~r~~t~llYLn~~w~~d~~Gg~~~f~~~ 65 (70)
T PF13661_consen 9 FRPNFRFYRYRRGDFFGWHVDADPSS----SGKRRFLTLLLYLNEDWDEDFGGGELFFDDD 65 (70)
T ss_pred cCcceeEEEcCCCCEeeeeEcCCccc----cccceeEEEEEEecccccCccCCcEEEEeCC
Confidence 35678999999999999999987643 25789999999999 4567889999875
No 13
>PF03336 Pox_C4_C10: Poxvirus C4/C10 protein; InterPro: IPR005004 This is a family of proteins expressed by members of the Poxviridae.
Probab=98.51 E-value=7.3e-07 Score=84.29 Aligned_cols=127 Identities=21% Similarity=0.307 Sum_probs=90.9
Q ss_pred eecccccccCC-cchHHHHHHHHHHHHhh-C-C-CCCCCccceEEecCCCCCcccccCCCCccccccCCCceEEEEEEEe
Q 021056 103 VRTSSGMFLSK-AQDEIVASIEARIAAWT-F-L-PPENGEAMQILHYEHGQKYEPHFDFFRDKMNQQLGGHRIATVLMYL 178 (318)
Q Consensus 103 ~R~s~~~~l~~-~~~~v~~~i~~Ri~~~~-g-l-p~~~~E~~qv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYL 178 (318)
.|.|+.+.+.. ..+++.+.|.+.|..-+ . + .....+.+.+++|+.|++|..|.|.... ......-.++++||
T Consensus 40 ~r~sk~iv~~~~~~~dI~~~ik~~l~~~lk~~v~~V~V~n~iTfikY~kGd~f~~~~d~~~~----~~~n~~~y~LvLyL 115 (339)
T PF03336_consen 40 FRKSKQIVIEDSLNDDIFSKIKNLLYDELKNVVEDVIVDNTITFIKYEKGDFFDNHRDFIKR----DSKNCLEYHLVLYL 115 (339)
T ss_pred ccccceEEEeccchHHHHHHHHHHHHHHhhcceeEEEEcceEEEEEEccCcchhhhccccee----ccCCceEEEEEEEE
Confidence 78888866652 23677777777665422 2 1 1234678999999999999999994332 23456789999999
Q ss_pred cCCCCCcceeecCCcccccCCCCcchhcCCCeEEeCCCCCEEEEeecCCCCCCCCCCCcccccccccceEEEEeeEeec
Q 021056 179 SHVEKGGETVFPNSEVSQSRDGNWSECARRGYAVKPMKGDALLFFSLHPDASTDSTSLHGSCPVIEGEKWSATKWIHVR 257 (318)
Q Consensus 179 nD~~eGGeT~Fp~~~~~~~~~~~~~~c~~~~~~VkP~~G~allF~n~~~~g~~d~~~lH~g~PV~~G~K~i~~~Wi~~~ 257 (318)
+.+.+||+|.+.-.+. ..-.|.+ ++-|+| |-...|++.+|.+|.|++|..=+-..
T Consensus 116 ~~~~~GGktkiyi~~~-------------~~tvI~~--~~DvLF---------dKsl~h~s~~V~~G~K~VAl~dV~i~ 170 (339)
T PF03336_consen 116 NNPENGGKTKIYIDPN-------------DNTVIST--SEDVLF---------DKSLNHESIIVEEGRKIVALFDVIIK 170 (339)
T ss_pred eccCCCceEEEEECCC-------------Cceeeec--cccEEE---------eccccccceEeccCeEEEEEEEEEEE
Confidence 9999999999764211 1222443 677888 46899999999999999977655444
No 14
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit. The holoenzyme has the activity (1.14.11.2 from EC) catalysing the reaction: Procollagen L-proline + 2-oxoglutarate + O2 = procollagen trans-4-hydroxy-L-proline + succinate + CO2. The full enzyme consists of a alpha2 beta2 complex with the alpha subunit contributing most of the parts of the active site []. The family also includes lysyl hydrolases, isopenicillin synthases and AlkB. ; GO: 0016491 oxidoreductase activity, 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process; PDB: 3ON7_D 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A ....
Probab=98.49 E-value=1.2e-07 Score=74.39 Aligned_cols=90 Identities=22% Similarity=0.333 Sum_probs=56.8
Q ss_pred ccceEEecC---CCCCcccccCCCCccccccCCCceEEEEEEEecCCCCCcceeecCCcccccCCCCcchhcCCCeEEeC
Q 021056 138 EAMQILHYE---HGQKYEPHFDFFRDKMNQQLGGHRIATVLMYLSHVEKGGETVFPNSEVSQSRDGNWSECARRGYAVKP 214 (318)
Q Consensus 138 E~~qv~rY~---~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnD~~eGGeT~Fp~~~~~~~~~~~~~~c~~~~~~VkP 214 (318)
+.+++++|. .+..+.+|+|.. .+++|++++ .++|++.|.... ..+.|.|
T Consensus 2 ~~~~~~~Y~~~~~~~~~~~H~D~~----------~~~~Til~~----~~~~gL~~~~~~--------------~~~~v~~ 53 (98)
T PF03171_consen 2 SQLRLNRYPPPENGVGIGPHTDDE----------DGLLTILFQ----DEVGGLQVRDDG--------------EWVDVPP 53 (98)
T ss_dssp -EEEEEEE-SCCGCEEEEEEEES------------SSEEEEEE----TSTS-EEEEETT--------------EEEE---
T ss_pred CEEEEEECCCcccCCceeCCCcCC----------CCeEEEEec----ccchheeccccc--------------cccCccC
Confidence 468999999 888999999974 468999999 678889988752 2467777
Q ss_pred CCCCEEEEe-ecC--CCCCCCCCCCcccccccccceEEEEeeEe
Q 021056 215 MKGDALLFF-SLH--PDASTDSTSLHGSCPVIEGEKWSATKWIH 255 (318)
Q Consensus 215 ~~G~allF~-n~~--~~g~~d~~~lH~g~PV~~G~K~i~~~Wi~ 255 (318)
..+.+++.. +.. -.+......+|+++++.+|+|++++.|++
T Consensus 54 ~~~~~~v~~G~~l~~~t~g~~~~~~HrV~~~~~~~R~s~~~f~~ 97 (98)
T PF03171_consen 54 PPGGFIVNFGDALEILTNGRYPATLHRVVPPTEGERYSLTFFLR 97 (98)
T ss_dssp -TTCEEEEEBHHHHHHTTTSS----EEEE--STS-EEEEEEEEE
T ss_pred ccceeeeeceeeeecccCCccCCceeeeEcCCCCCEEEEEEEEC
Confidence 777655554 311 12334678999999999999999999985
No 15
>COG3751 EGL-9 Predicted proline hydroxylase [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=2.3e-05 Score=71.89 Aligned_cols=101 Identities=28% Similarity=0.307 Sum_probs=76.3
Q ss_pred cceEEecCCCCCcccccCCCCccccccCCCceEEEEEEEecC---CCCCcce-eecCCcccccCCCCcchhcCCCeEEeC
Q 021056 139 AMQILHYEHGQKYEPHFDFFRDKMNQQLGGHRIATVLMYLSH---VEKGGET-VFPNSEVSQSRDGNWSECARRGYAVKP 214 (318)
Q Consensus 139 ~~qv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnD---~~eGGeT-~Fp~~~~~~~~~~~~~~c~~~~~~VkP 214 (318)
+.|+.-|.+|.+|..|-|.+.+ ...|.+|.++|++. .+-|||+ .|+.... . ... ...-..|.|
T Consensus 137 e~~~~~y~~G~~l~~H~D~~~~------~~~R~~~yv~y~~r~wkpe~GGeL~l~~s~~~---~-~~~---~~~~~ti~P 203 (252)
T COG3751 137 EGQITVYNPGCFLLKHDDNGRD------KDIRLATYVYYLTREWKPEYGGELRLFHSLQK---N-NTA---ADSFKTIAP 203 (252)
T ss_pred eeeeeEecCCceeEeecccCCC------ccceEEEEEeccCCCCCcCCCCceeecccccc---c-ccc---cccccccCC
Confidence 5899999999999999999864 35799999999997 4679999 6766421 0 000 012467999
Q ss_pred CCCCEEEEeecCCCCCCCCCCCccccccc-ccceEEEEeeEeecc
Q 021056 215 MKGDALLFFSLHPDASTDSTSLHGSCPVI-EGEKWSATKWIHVRN 258 (318)
Q Consensus 215 ~~G~allF~n~~~~g~~d~~~lH~g~PV~-~G~K~i~~~Wi~~~~ 258 (318)
+-+..++|.+-. .++.|.+.+|. .+.|.+++.|++...
T Consensus 204 ~fn~lv~F~s~~------~Hs~h~V~~~~~~~~RlsV~GW~r~~~ 242 (252)
T COG3751 204 VFNSLVFFKSRP------SHSVHSVEEPYAAADRLSVTGWFRRPG 242 (252)
T ss_pred CCceEEEEEecC------CccceeccccccccceEEEeeEEecCC
Confidence 999999997621 24888887754 468999999998765
No 16
>PHA02866 Hypothetical protein; Provisional
Probab=98.11 E-value=1.2e-05 Score=74.54 Aligned_cols=135 Identities=19% Similarity=0.207 Sum_probs=91.6
Q ss_pred cccceeEeCCCCc-ccccceecccccccCCcchHHHHHHHHHHHHhhCCCC---CCCccceEEecCCCCCcccccCCCCc
Q 021056 85 LETSMVADNESGK-SIASEVRTSSGMFLSKAQDEIVASIEARIAAWTFLPP---ENGEAMQILHYEHGQKYEPHFDFFRD 160 (318)
Q Consensus 85 l~~s~v~~~~~g~-~~~~~~R~s~~~~l~~~~~~v~~~i~~Ri~~~~glp~---~~~E~~qv~rY~~G~~y~~H~D~~~~ 160 (318)
+++|.+.+.+.|- -.....|.+.++ +++..++. |+.++. ++. -..+.+.+++|..|.+|.-|+|..+.
T Consensus 32 w~~s~i~~~~~~i~~~~~~~~k~k~~------~~v~~~v~-~~~~~~-~~~~dv~v~~~~t~vk~~kg~~fdn~~~~~~~ 103 (333)
T PHA02866 32 WEDSDILRHRQFIPCEILVLEKSERT------KQVFGAVK-RVLASS-LTDYDVYVCEHLTIVKCFKGVGFDNRFSILTE 103 (333)
T ss_pred cchhhhhhhccCCceeeeehhhhhhh------HHHHHHHH-HHHhcc-CCCccEEEeeeEEEEEEecccccccceeEEEe
Confidence 7788887654452 233445666554 56777766 444432 222 23456889999999999999998653
Q ss_pred cccccCCCceEEEEEEEecCCCCCcceeecCCcccccCCCCcchhcCCCeEEeCCCCCEEEEeecCCCCCCCCCCCcccc
Q 021056 161 KMNQQLGGHRIATVLMYLSHVEKGGETVFPNSEVSQSRDGNWSECARRGYAVKPMKGDALLFFSLHPDASTDSTSLHGSC 240 (318)
Q Consensus 161 ~~~~~~~~~R~~T~liYLnD~~eGGeT~Fp~~~~~~~~~~~~~~c~~~~~~VkP~~G~allF~n~~~~g~~d~~~lH~g~ 240 (318)
. ....+-.++++||+.+.+||+|.++-.+. -.+. .+ +-++| |-...|+..
T Consensus 104 ~----~~~~~~Y~LvLyL~~p~~GGkt~iyv~~~---------------t~i~-~~-~DvLF---------DKsl~h~S~ 153 (333)
T PHA02866 104 D----RHRGREYTLVLHLSSPKNGGKTDVCVGDK---------------TVIS-TA-DDFLL---------EKRSEQLSN 153 (333)
T ss_pred c----cCCceEEEEEEEEeccccCCceEEEeCCC---------------ceEe-ec-cceee---------eccccccce
Confidence 2 22457899999999999999999985421 1122 12 23556 568999999
Q ss_pred cccccceEEEEeeEeec
Q 021056 241 PVIEGEKWSATKWIHVR 257 (318)
Q Consensus 241 PV~~G~K~i~~~Wi~~~ 257 (318)
-|.+|+|.+|-.=+-..
T Consensus 154 ~V~~G~K~Vali~V~ik 170 (333)
T PHA02866 154 VVQEGEKIVVAVKVFLL 170 (333)
T ss_pred eeecCcEEEEEEEEEEe
Confidence 99999998776654433
No 17
>TIGR02408 ectoine_ThpD ectoine hydroxylase. Both ectoine and hydroxyectoine are compatible solvents that serve as protectants against osmotic and thermal stresses. A number of genomes synthesize ectoine. This enzyme allows conversion of ectoine to hydroxyectoine, which may be more effective for some purposes, and is found in a subset of ectoine-producing organisms.
Probab=97.96 E-value=0.00015 Score=67.90 Aligned_cols=193 Identities=13% Similarity=0.136 Sum_probs=97.9
Q ss_pred CCceeEEeccCCCEEEEcCCCCHHHHHHHHHHHhcccccceeEeCCCCc--ccccceecccccccCCcchHHHH------
Q 021056 49 DPSRVTQLSWNPRAFIYKGFLSDEECDHLIDLAKDKLETSMVADNESGK--SIASEVRTSSGMFLSKAQDEIVA------ 120 (318)
Q Consensus 49 ~p~kve~ls~~P~i~ii~nfLs~~EC~~Li~~a~~~l~~s~v~~~~~g~--~~~~~~R~s~~~~l~~~~~~v~~------ 120 (318)
.+..++....+.+ +++++||+++|++.|.+..+..+....+.....+. ......|.....+ ..++++.
T Consensus 18 t~eqi~~f~~dGy-vvl~~vls~eev~~lr~~i~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~---~~~~~~~~l~~~p 93 (277)
T TIGR02408 18 SAKQLQSYERDGF-LLLENLFSDDEVAALLAEVERMTRDPAIVRDEEAITEPGSNAVRSIFEVH---VLSPILARLVRDP 93 (277)
T ss_pred CHHHHHHHHHCCE-EECcccCCHHHHHHHHHHHHHHHhcccccCCCcceecCCCCceEEEeccc---ccCHHHHHHHcCh
Confidence 3334445556666 58899999999999999887644321111000000 0001222211111 1233332
Q ss_pred HHHHHHHHhhCCCCCCCccceEEecC-CCCCcccccCCCCccccccCCCceEEEEEEEecCCCC-Ccceee-cCCccc--
Q 021056 121 SIEARIAAWTFLPPENGEAMQILHYE-HGQKYEPHFDFFRDKMNQQLGGHRIATVLMYLSHVEK-GGETVF-PNSEVS-- 195 (318)
Q Consensus 121 ~i~~Ri~~~~glp~~~~E~~qv~rY~-~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnD~~e-GGeT~F-p~~~~~-- 195 (318)
+|.+.++++.|-+.......-+.+.. .|+.+.||.|...-.........+.+|+.|+|.|+.+ .|.+.| |.....
T Consensus 94 ~l~~~~~~LlG~~~~l~~~~l~~kp~~~g~~~~WHQD~~~w~~~~~~p~~~~vt~wiaLdD~t~eNG~l~vIPGSH~~~~ 173 (277)
T TIGR02408 94 RVANAARQILGSDVYVHQSRINMKPGFKGTGFYWHSDFETWHAEDGMPSMRAVSCSIALTDNNETNGPLMLVPGSHRTFI 173 (277)
T ss_pred HHHHHHHHHcCCCeEEEeeeeeecCCCCCCCccCCcCCccccccCCCCCcCeEEEEEEcccCCCCCCCEEEecCCCCCcc
Confidence 33444555555332111111123444 3567889999742110000112368999999999863 466666 443210
Q ss_pred -----ccC---CCCc-------chh-------c-CCCeEEeCCCCCEEEEeecCCCCCCCCCCCccccccccc-ceEEEE
Q 021056 196 -----QSR---DGNW-------SEC-------A-RRGYAVKPMKGDALLFFSLHPDASTDSTSLHGSCPVIEG-EKWSAT 251 (318)
Q Consensus 196 -----~~~---~~~~-------~~c-------~-~~~~~VkP~~G~allF~n~~~~g~~d~~~lH~g~PV~~G-~K~i~~ 251 (318)
.+. +..+ .+. . ..-+.+.-++|++|||. .+++|++-|.... .|+++-
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~~~~aGDvl~f~---------~~~~H~S~~N~s~~~R~~l~ 244 (277)
T TIGR02408 174 SCVGETPRDNYKQSLKKQEYGVPDPVSLTKLADQGGISTFTGKAGSAVWFD---------CNTMHGSGSNITPWPRSNVF 244 (277)
T ss_pred cCCccccchhhhhhhhhhhcCCCCHHHHHHHHHhCCceeeccCCceEEEEc---------cccccCCCCCCCCCcceeEE
Confidence 000 0000 000 0 01235667999999995 4899999998874 555554
Q ss_pred eeE
Q 021056 252 KWI 254 (318)
Q Consensus 252 ~Wi 254 (318)
.=+
T Consensus 245 l~y 247 (277)
T TIGR02408 245 MVF 247 (277)
T ss_pred EEE
Confidence 433
No 18
>PF05721 PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro: IPR008775 This family is made up of several eukaryotic phytanoyl-CoA dioxygenase (PhyH) proteins as well as a number of bacterial deoxygenases. PhyH is a peroxisomal enzyme catalysing the first step of phytanic acid alpha-oxidation. PhyH deficiency causes Refsum's disease (RD) which is an inherited neurological syndrome biochemically characterised by the accumulation of phytanic acid in plasma and tissues [].; PDB: 3GJA_A 3EMR_A 3OBZ_A 2OPW_A 3NNL_B 3NNF_A 3NNM_B 3NNJ_A 2FCV_B 2FCU_A ....
Probab=97.74 E-value=0.00025 Score=61.56 Aligned_cols=166 Identities=22% Similarity=0.136 Sum_probs=83.5
Q ss_pred EEEEcCCCCHHHHHHHHHHHhcc----cccc-eeEeCCCCcccccceecccccccCCcc---hHHH-H-HHHHHHHHhhC
Q 021056 62 AFIYKGFLSDEECDHLIDLAKDK----LETS-MVADNESGKSIASEVRTSSGMFLSKAQ---DEIV-A-SIEARIAAWTF 131 (318)
Q Consensus 62 i~ii~nfLs~~EC~~Li~~a~~~----l~~s-~v~~~~~g~~~~~~~R~s~~~~l~~~~---~~v~-~-~i~~Ri~~~~g 131 (318)
.++++|+|+++|++.|.+..... +... .......+.. ......++.... ..+. . .|.+.++++.|
T Consensus 6 yvvi~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 80 (211)
T PF05721_consen 6 YVVIRNVLSPEEVERLREELDRLDDRALEPDQDVSDFFDESF-----FGDYTEQLAKSPNFYDLFLHPPRILDLVRALLG 80 (211)
T ss_dssp EEEETTSS-HHHHHHHHHHHHHHHHHHTTTTTSCEEEESTSC-----CCTCCCCGCCCHHHHHHHHTHHHHHHHHHHHHT
T ss_pred EEEECCcCCHHHHHHHHHHHHHHHhhhhcccccccccccccc-----ccccccccccchhhHHHHhhHHHHHHHHHHhhC
Confidence 46899999999999999888762 1111 1100000000 001111111100 1111 2 56666666666
Q ss_pred CCCC----CCccce-EEecC-CCCCc-ccccCCCCccccccCCCceEEEEEEEecCCC-CCcceee-cCCccc--cc-CC
Q 021056 132 LPPE----NGEAMQ-ILHYE-HGQKY-EPHFDFFRDKMNQQLGGHRIATVLMYLSHVE-KGGETVF-PNSEVS--QS-RD 199 (318)
Q Consensus 132 lp~~----~~E~~q-v~rY~-~G~~y-~~H~D~~~~~~~~~~~~~R~~T~liYLnD~~-eGGeT~F-p~~~~~--~~-~~ 199 (318)
-... ....++ +.+-. .|... .||.|....... ...+.+|+.|+|.|+. +.|.+.+ |..... .. ..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~wH~D~~~~~~~---~~~~~~~~wi~L~d~~~~~G~~~v~pGSH~~~~~~~~~ 157 (211)
T PF05721_consen 81 SDVFVQNWLQSMYQDIVKPPGPGAAVQPWHQDAPYWHTD---PPENQLTVWIALDDITPENGPLEVVPGSHKWGVEPHEE 157 (211)
T ss_dssp SSEEEE--EEEEEEEEEE-TTTTC-EEEEBEHHHCSTEE---SSSCEEEEEEESS-BBTTCTCEEEETTGCCSCCEEECC
T ss_pred CcchhhhhhHHHHHhhhhccccCCCCCCCCCCCcccccC---CccceEEEEEeeccCCcccCceEeecCCcCCCcccccc
Confidence 4421 111221 23332 46665 999997653210 1468999999999984 4555665 443221 00 00
Q ss_pred -------CCc-----chhcCCCeEEeCCCCCEEEEeecCCCCCCCCCCCcccccccc
Q 021056 200 -------GNW-----SECARRGYAVKPMKGDALLFFSLHPDASTDSTSLHGSCPVIE 244 (318)
Q Consensus 200 -------~~~-----~~c~~~~~~VkP~~G~allF~n~~~~g~~d~~~lH~g~PV~~ 244 (318)
..+ .......+.+..++|++|||. .+++|++-|-..
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gdvl~~~---------~~~~H~s~~N~s 205 (211)
T PF05721_consen 158 RFPEEDFPEEDDEESDEDEDEWVPVPMKAGDVLFFH---------SRLIHGSGPNTS 205 (211)
T ss_dssp CCCCCCCCCCHHHHHHHHCSGCEEE-BSTTEEEEEE---------TTSEEEEE-B-S
T ss_pred cccccccccccccccccccCceEEeecCCCeEEEEc---------CCccccCCCCCC
Confidence 000 001134588999999999995 489999998665
No 19
>PF09859 Oxygenase-NA: Oxygenase, catalysing oxidative methylation of damaged DNA; InterPro: IPR018655 This family of various hypothetical prokaryotic proteins, has no known function.
Probab=97.69 E-value=0.00016 Score=62.00 Aligned_cols=101 Identities=26% Similarity=0.336 Sum_probs=74.9
Q ss_pred cceEEecCCCCCcccccCCCCccccccCCCceEEEEEEEecCC---CCCcceeecCCcc-cccCCCCcchhcCCCeEEeC
Q 021056 139 AMQILHYEHGQKYEPHFDFFRDKMNQQLGGHRIATVLMYLSHV---EKGGETVFPNSEV-SQSRDGNWSECARRGYAVKP 214 (318)
Q Consensus 139 ~~qv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnD~---~eGGeT~Fp~~~~-~~~~~~~~~~c~~~~~~VkP 214 (318)
..-+++|++|++=..|.|..-+.. =-+-+++.||++ ++|||.++-.... .| .....+.+
T Consensus 63 tplllrY~~gdyn~LHqdlyGe~v-------FPlQvv~lLs~Pg~DftGGEFVltEQrPR~Q----------SR~~V~~L 125 (173)
T PF09859_consen 63 TPLLLRYGPGDYNCLHQDLYGEHV-------FPLQVVILLSEPGEDFTGGEFVLTEQRPRMQ----------SRAMVLPL 125 (173)
T ss_pred chhhheeCCCCccccccCCCCCcc-------cCeEEEEEcCCCCCcccCceEEEEEecCCcc----------CccccCCc
Confidence 367899999999999999753310 124577889984 5899999876543 12 24688999
Q ss_pred CCCCEEEEeec-CC----CCCCCCCCCcccccccccceEEEEeeEee
Q 021056 215 MKGDALLFFSL-HP----DASTDSTSLHGSCPVIEGEKWSATKWIHV 256 (318)
Q Consensus 215 ~~G~allF~n~-~~----~g~~d~~~lH~g~PV~~G~K~i~~~Wi~~ 256 (318)
++|+|+||..- .| .|.--...-|++.+|.+|+++.+-.=||.
T Consensus 126 ~qGda~if~t~~RPv~G~rG~yRv~~RHgVS~vrsG~R~tLgliFHD 172 (173)
T PF09859_consen 126 RQGDALIFATNHRPVRGARGYYRVNMRHGVSRVRSGERHTLGLIFHD 172 (173)
T ss_pred CCCCEEEEecCCCCcCCCccceecccccccccccccceEEEEEEeec
Confidence 99999999843 23 23334568999999999999999877764
No 20
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A.
Probab=97.51 E-value=0.0002 Score=56.70 Aligned_cols=88 Identities=25% Similarity=0.290 Sum_probs=46.1
Q ss_pred EecCCCCCcccccCCCCccccccCCCceEEEEEEEecCCCCCcceeecCCcc----cccC-CCCcchhcCCCeEEeCCCC
Q 021056 143 LHYEHGQKYEPHFDFFRDKMNQQLGGHRIATVLMYLSHVEKGGETVFPNSEV----SQSR-DGNWSECARRGYAVKPMKG 217 (318)
Q Consensus 143 ~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnD~~eGGeT~Fp~~~~----~~~~-~~~~~~c~~~~~~VkP~~G 217 (318)
..|..|++-.+|.= ....++.++||+.+++.|.+.|.+... ..+. ......-......|+|+.|
T Consensus 5 ni~~~g~~~~~H~H-----------~~s~~SgVyYv~~p~~~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~G 73 (101)
T PF13759_consen 5 NIYRKGGYNEPHNH-----------PNSWLSGVYYVQVPEGSGPLRFHDPRGSFSFGAPFDNYDQNDLNSPYYIVEPEEG 73 (101)
T ss_dssp EEE-TT--EEEE-------------TT-SEEEEEECE--TTS-SEEEE-TTCCCGTTS----TTTTCCC-SEEEE---TT
T ss_pred EEeCCCCccCceEC-----------CCcCEEEEEEEECCCCCCceeeeCCCccceecccccccccCcccCceEEeCCCCC
Confidence 45677887777752 134789999999888889999976532 0000 0000111134688999999
Q ss_pred CEEEEeecCCCCCCCCCCCccccccccc-ceEEE
Q 021056 218 DALLFFSLHPDASTDSTSLHGSCPVIEG-EKWSA 250 (318)
Q Consensus 218 ~allF~n~~~~g~~d~~~lH~g~PV~~G-~K~i~ 250 (318)
++|||++ ...|++.|-... +|+++
T Consensus 74 ~lvlFPs---------~l~H~v~p~~~~~~Risi 98 (101)
T PF13759_consen 74 DLVLFPS---------WLWHGVPPNNSDEERISI 98 (101)
T ss_dssp EEEEEET---------TSEEEE----SSS-EEEE
T ss_pred EEEEeCC---------CCEEeccCcCCCCCEEEE
Confidence 9999997 799999998864 67665
No 21
>KOG3844 consensus Predicted component of NuA3 histone acetyltransferase complex [Chromatin structure and dynamics]
Probab=97.39 E-value=0.0019 Score=62.46 Aligned_cols=176 Identities=19% Similarity=0.275 Sum_probs=107.9
Q ss_pred cCCCE-EEEcCCCCHHHHHHHHHHHhc--cccccee--E-eCCCCcccccceecccccccCC---cchHHHHHHHHHHHH
Q 021056 58 WNPRA-FIYKGFLSDEECDHLIDLAKD--KLETSMV--A-DNESGKSIASEVRTSSGMFLSK---AQDEIVASIEARIAA 128 (318)
Q Consensus 58 ~~P~i-~ii~nfLs~~EC~~Li~~a~~--~l~~s~v--~-~~~~g~~~~~~~R~s~~~~l~~---~~~~v~~~i~~Ri~~ 128 (318)
..|+- +++++|+++...+.+.+..+. ++.+-.+ . -.++|. .++-+++-.+. ..+.+......-|+.
T Consensus 33 ngPf~h~~i~~~vnd~~l~~vrkei~~~~~f~~k~tDlyr~~Qtgd-----L~nl~~le~p~lf~~r~~Lyke~r~~~q~ 107 (476)
T KOG3844|consen 33 NGPFNHFIIRDFVNDSLLRVVRKEIHGSIHFTEKETDLYRVLQTGD-----LANLEGLEFPALFSFRDSLYKEARGEIQD 107 (476)
T ss_pred cCCCcceeeeccCCHHHHHHHHHHHhhccchhhhcchhhheecccc-----ccccccccchhHHHHHHHHHHHHHHHHHh
Confidence 45654 689999998888777755443 2222110 0 011221 12111110000 002222333444555
Q ss_pred hhCCCCCCCccceEEecCCCCCcccccCCCCccccccCCCceEEEEEEEecCCC----CCcceee-cCCcccccCCCCcc
Q 021056 129 WTFLPPENGEAMQILHYEHGQKYEPHFDFFRDKMNQQLGGHRIATVLMYLSHVE----KGGETVF-PNSEVSQSRDGNWS 203 (318)
Q Consensus 129 ~~glp~~~~E~~qv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnD~~----eGGeT~F-p~~~~~~~~~~~~~ 203 (318)
++|--..-.-++-+..|..|.+--.|-|-. +.|.+.+++||.|.. -||++.. |.....|++.
T Consensus 108 vtg~~s~sk~Dms~s~Y~kgd~LL~HDD~i---------etRriaFilYL~~~Dwds~~GG~L~Lf~~d~~~~P~s---- 174 (476)
T KOG3844|consen 108 VTGGLSTSKIDMSGSYYRKGDHLLCHDDVI---------ETRRIAFILYLVDPDWDSEYGGELRLFPDDCPSQPKS---- 174 (476)
T ss_pred ccCccccceeeeceeeeeccceeccccccc---------cceEEEEEEEecCcccccccCceeEecccccccCccc----
Confidence 564333334468899999999999998864 468899999999765 3888875 4433233332
Q ss_pred hhcCCCeEEeCCCCCEEEEeecCCCCCCCCCCCcccccccccc-eEEEEeeEeeccCCCC
Q 021056 204 ECARRGYAVKPMKGDALLFFSLHPDASTDSTSLHGSCPVIEGE-KWSATKWIHVRNFDKP 262 (318)
Q Consensus 204 ~c~~~~~~VkP~~G~allF~n~~~~g~~d~~~lH~g~PV~~G~-K~i~~~Wi~~~~~~~~ 262 (318)
--.++.|+-...++|.- -+-+.|.+..|..-+ |.+|+.|+|......+
T Consensus 175 ----~~asl~P~~Nql~fFeV-------sp~SFH~V~Ev~sde~RlSIsGWfH~p~~~eP 223 (476)
T KOG3844|consen 175 ----VAASLEPQWNQLVFFEV-------SPISFHDVEEVLSDEPRLSISGWFHFPQIGEP 223 (476)
T ss_pred ----hhhccCcccceEEEEEe-------cccchhhHHHHhccCcceeEeeeecCCccCCC
Confidence 12458899999888864 357999999999754 5999999998765443
No 22
>TIGR01762 chlorin-enz chlorinating enzymes. This model represents a a group of highly homologous enzymes related to dioxygenases which chlorinate amino acid methyl groups. BarB1 and BarB2 are proposed to trichlorinate one of the methyl groups of a leucine residue in the biosynthesis of barbamide in the cyanobacterium Lyngbya majuscula. SyrB2 is proposed to chlorinate the methyl group of threonine in the biosynthesis of syringomycin in Pseudomonas syringae. CmaB is proposed to chlorinate the beta-methyl group of alloisoleucine in the process of ring closure in the biosynthesis of coronamic acid, a component of coronatine also in Pseudomonas syringae.
Probab=97.28 E-value=0.0083 Score=56.61 Aligned_cols=185 Identities=15% Similarity=0.106 Sum_probs=95.4
Q ss_pred EEeccCCCEEEEcCCCCHHHHHHHHHHHhcccccceeEeCCCCcccccceecccccccCCcchHHH------HHHHHHHH
Q 021056 54 TQLSWNPRAFIYKGFLSDEECDHLIDLAKDKLETSMVADNESGKSIASEVRTSSGMFLSKAQDEIV------ASIEARIA 127 (318)
Q Consensus 54 e~ls~~P~i~ii~nfLs~~EC~~Li~~a~~~l~~s~v~~~~~g~~~~~~~R~s~~~~l~~~~~~v~------~~i~~Ri~ 127 (318)
+....+.+ ++++++||++|++.|.+.++..+............ ...|.+ |.....++.+ .+|-+.++
T Consensus 9 ~~y~e~Gy-v~~~~~~s~eei~~L~~~~~~~l~~~~~~~~~~~~---~~~~~~---~~~~~~~~~~~~l~~~~~l~~~~~ 81 (288)
T TIGR01762 9 QSFEKNGF-IGPFTLYSPEEMKETWKRIRLRLLDRSAAPYQDLG---GTNIAN---YDRHLDDDFLASHICRPEICHRVE 81 (288)
T ss_pred HHHHhCCE-EeCcCCCCHHHHHHHHHHHHHHhhccccccccCCC---CceeEe---eeecccCHHHHHHhcCHHHHHHHH
Confidence 33444555 57899999999999999876533211110000000 111211 1111112222 33444555
Q ss_pred HhhCCCCCCCccceEEecCCCCCcccccCCCCccccc--------cCCCceEEEEEEEecCCC-CCcceee-cCCccccc
Q 021056 128 AWTFLPPENGEAMQILHYEHGQKYEPHFDFFRDKMNQ--------QLGGHRIATVLMYLSHVE-KGGETVF-PNSEVSQS 197 (318)
Q Consensus 128 ~~~glp~~~~E~~qv~rY~~G~~y~~H~D~~~~~~~~--------~~~~~R~~T~liYLnD~~-eGGeT~F-p~~~~~~~ 197 (318)
++.|-.....-..-+.+...++.+.||.|...-.... .....+.+|+.|-|.|+. +-|.+.| |.......
T Consensus 82 ~llG~~v~l~~~~~~~K~pg~~~~~wHQD~~y~~~~~~~~~~~p~~~~~~~~vt~wiaLdd~t~eNG~L~viPGSH~~~~ 161 (288)
T TIGR01762 82 SILGPNVLCWRTEFFPKYPGDEGTDWHQADTFANASGKPQLVWPENEEFGGTITVWTAFTDATIENGCMQFIPGTHNSMN 161 (288)
T ss_pred HHhCCcEEeeeceeeeeCCCCCCCCCCccCcccccCCcccccccccCCCCCeEEEEEEcccCCcccCCEEEECCCCCCCC
Confidence 5655332222122344555445589999964321100 012247899999999975 4566655 33321000
Q ss_pred ----C-------------------------------CCCcchhcCCCeEEeCCCCCEEEEeecCCCCCCCCCCCcccccc
Q 021056 198 ----R-------------------------------DGNWSECARRGYAVKPMKGDALLFFSLHPDASTDSTSLHGSCPV 242 (318)
Q Consensus 198 ----~-------------------------------~~~~~~c~~~~~~VkP~~G~allF~n~~~~g~~d~~~lH~g~PV 242 (318)
+ +..+.......+.+.-++|+++||. ..++|++.|-
T Consensus 162 ~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~l~~d~~~~~~~~~~v~~~lkaGd~~~f~---------~~t~HgS~~N 232 (288)
T TIGR01762 162 YDETRRMTFEPDANNSVVKGGVRRGFFGYDYRQLQIDENWKPDEASAVPMQMKAGQFIIFW---------STLMHASYPN 232 (288)
T ss_pred CCcccccccCccccccccccccccccccccchhhcccccCCccccceeeeeeCCceEEEEC---------CCceecCCCC
Confidence 0 0000001112367777999999995 4899999999
Q ss_pred cccc--eEEEEe-eE
Q 021056 243 IEGE--KWSATK-WI 254 (318)
Q Consensus 243 ~~G~--K~i~~~-Wi 254 (318)
.+.. +++++. |+
T Consensus 233 ~S~~~~R~~~~~ry~ 247 (288)
T TIGR01762 233 SGESQMRMGFASRYV 247 (288)
T ss_pred CCCCceEEEEEEEEc
Confidence 8853 554433 54
No 23
>TIGR02466 conserved hypothetical protein. This family consists of uncharacterized proteins in Caulobacter crescentus CB15, Bdellovibrio bacteriovorus HD100, Synechococcus sp. WH 8102 (2), Silicibacter pomeroyi DSS-3 (2), and Hyphomonas neptunium ATCC 15444. The context of nearby genes differs substantially between members and does point to any specific biological role.
Probab=97.07 E-value=0.0031 Score=56.47 Aligned_cols=90 Identities=22% Similarity=0.256 Sum_probs=60.6
Q ss_pred EEecCCCCCcccccCCCCccccccCCCceEEEEEEEecCCCCCcceeecCCcc----cccCCC-CcchhcCCCeEEeCCC
Q 021056 142 ILHYEHGQKYEPHFDFFRDKMNQQLGGHRIATVLMYLSHVEKGGETVFPNSEV----SQSRDG-NWSECARRGYAVKPMK 216 (318)
Q Consensus 142 v~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnD~~eGGeT~Fp~~~~----~~~~~~-~~~~c~~~~~~VkP~~ 216 (318)
+.++.+|++-..|+ ++ +-.++.++||+.+..+|.+.|.+... ..+... .........+.|+|+.
T Consensus 100 ~ni~~~Gg~h~~H~---Hp--------~~~lSgvyYl~~p~~~g~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~v~P~~ 168 (201)
T TIGR02466 100 VNILPQGGTHSPHL---HP--------GSVISGTYYVQTPENCGAIKFEDPRLDDMMAAPMRIPNAKRAVQRFVYVPPQE 168 (201)
T ss_pred EEEcCCCCccCceE---CC--------CceEEEEEEEeCCCCCCceeEecCcchhhhccccccCccccccCccEEECCCC
Confidence 56678888766665 21 34799999999888888888854321 000000 0001112346799999
Q ss_pred CCEEEEeecCCCCCCCCCCCcccccccc-cceEEEE
Q 021056 217 GDALLFFSLHPDASTDSTSLHGSCPVIE-GEKWSAT 251 (318)
Q Consensus 217 G~allF~n~~~~g~~d~~~lH~g~PV~~-G~K~i~~ 251 (318)
|++|+|+| ...|++.|-.. ++|+++.
T Consensus 169 G~lvlFPS---------~L~H~v~p~~~~~~RISiS 195 (201)
T TIGR02466 169 GRVLLFES---------WLRHEVPPNESEEERISVS 195 (201)
T ss_pred CeEEEECC---------CCceecCCCCCCCCEEEEE
Confidence 99999987 79999999885 5777664
No 24
>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A ....
Probab=96.65 E-value=0.017 Score=50.50 Aligned_cols=153 Identities=22% Similarity=0.205 Sum_probs=75.8
Q ss_pred EEEEcCCCCHHHHHHHHHHHhccc--ccceeEeCCCCcccc---------------cceecccc-----cccCCcchHHH
Q 021056 62 AFIYKGFLSDEECDHLIDLAKDKL--ETSMVADNESGKSIA---------------SEVRTSSG-----MFLSKAQDEIV 119 (318)
Q Consensus 62 i~ii~nfLs~~EC~~Li~~a~~~l--~~s~v~~~~~g~~~~---------------~~~R~s~~-----~~l~~~~~~v~ 119 (318)
+++++||||++|.+.|++...... ....... ++... ..++-+.. .-++. ..+.+
T Consensus 2 ~~~~~~fls~~e~~~l~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~y~y~~~~~~~~~~~~~-~p~~l 77 (194)
T PF13532_consen 2 LYYIPNFLSEEEAAELLNELRESAPFRQPTYPM---GKVYSLPRKLCGGLSWVGDGPSYRYSGKRPVRSKPWPP-FPEWL 77 (194)
T ss_dssp EEEETTSS-HHHHHHHHHHHHHHS--B-GCCCC---CCECCECCE-SSEEEEEECT--CCCTCC-EECCCEBSC-CHHHH
T ss_pred EEEECCCCCHHHHHHHHHHHHhhCCCcCCeEcC---CCEEccceecceeeEEECCCCCeEcCCccccCCCCCCC-ccHHH
Confidence 689999999999999999887421 1111100 11000 01111110 01111 12345
Q ss_pred HHHHHHHHHhhC-CCCCCCccceEEecCCCCCcccccCCCCccccccCCCceEEEEEEEecCCCCCcceeecCCcccccC
Q 021056 120 ASIEARIAAWTF-LPPENGEAMQILHYEHGQKYEPHFDFFRDKMNQQLGGHRIATVLMYLSHVEKGGETVFPNSEVSQSR 198 (318)
Q Consensus 120 ~~i~~Ri~~~~g-lp~~~~E~~qv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnD~~eGGeT~Fp~~~~~~~~ 198 (318)
..+.+++....+ .+........|..|..|+.-.+|.|.... ..+..++|+-+ |+..+|-..... .
T Consensus 78 ~~~~~~~~~~~~~~~~~~~n~~liN~Y~~g~~i~~H~D~~~~-----~~~~~I~slSL-------G~~~~~~f~~~~-~- 143 (194)
T PF13532_consen 78 SRLLERLVEATGIPPGWRPNQCLINYYRDGSGIGPHSDDEEY-----GFGPPIASLSL-------GSSRVFRFRNKS-D- 143 (194)
T ss_dssp HHHHHHHHHHHT-SHSS--SEEEEEEESSTT-EEEE---TTC------CCSEEEEEEE-------ES-EEEEEEECG-G-
T ss_pred HHHHHHHHHHhccccCCCCCEEEEEecCCCCCcCCCCCcccc-----cCCCcEEEEEE-------ccCceEEEeecc-C-
Confidence 555555655444 22223345678899999999999998632 13456777664 333334221100 0
Q ss_pred CCCcchhcCCCeEEeCCCCCEEEEeecCCCCCCCCCCCccccccccc
Q 021056 199 DGNWSECARRGYAVKPMKGDALLFFSLHPDASTDSTSLHGSCPVIEG 245 (318)
Q Consensus 199 ~~~~~~c~~~~~~VkP~~G~allF~n~~~~g~~d~~~lH~g~PV~~G 245 (318)
.+..+.|.-..|+++++. |...... |++.|+..+
T Consensus 144 -------~~~~~~~~L~~gsl~vm~-----g~~r~~~-H~I~~~~~~ 177 (194)
T PF13532_consen 144 -------DDEPIEVPLPPGSLLVMS-----GEARYDW-HGIPPVKKD 177 (194)
T ss_dssp -------TS-EEEEEE-TTEEEEEE-----TTHHHHE-EEE-S-SCE
T ss_pred -------CCccEEEEcCCCCEEEeC-----hHHhhhe-eEcccccCC
Confidence 013588999999999995 2233345 999998874
No 25
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro []. Interestingly TET2 is considered as an oncogene, as it is found mutated in some types of cancer []. This entry represents the double-stranded beta helix (DSBH) fold of the 2-oxoglutarate (2OG) - Fe(II) oxygenases. DSBH comprises a part of the catalytic domain in TETS. It is found in many organisms including fruit fly, African malaria mosquito, zebrafish, mouse and human.
Probab=96.34 E-value=0.014 Score=50.99 Aligned_cols=79 Identities=27% Similarity=0.299 Sum_probs=58.0
Q ss_pred CcccccCCCCccccccCCCceEEEEEEEecC-CCCCcceeecCCcccccCCCCcchhcCCCeEEeCCCCCEEEEeecCCC
Q 021056 150 KYEPHFDFFRDKMNQQLGGHRIATVLMYLSH-VEKGGETVFPNSEVSQSRDGNWSECARRGYAVKPMKGDALLFFSLHPD 228 (318)
Q Consensus 150 ~y~~H~D~~~~~~~~~~~~~R~~T~liYLnD-~~eGGeT~Fp~~~~~~~~~~~~~~c~~~~~~VkP~~G~allF~n~~~~ 228 (318)
....|.|.... +--.|+++-|.- +++||..++|..+. .-.|++|.|..|++|+|-.
T Consensus 86 ~t~~HrD~~~~--------~~~~~~~~t~~~gd~~~g~l~lp~~~~-----------~~~g~~~~~~~GtVl~~~~---- 142 (171)
T PF12851_consen 86 CTHSHRDTHNM--------PNGYDVLCTLGRGDYDGGRLELPGLDP-----------NILGVAFAYQPGTVLIFCA---- 142 (171)
T ss_pred CccceecCCCC--------CCCeEEEEecCCccccCceEecccccc-----------ccCCEEEecCCCcEEEEcc----
Confidence 34567776432 234666666654 38899999998211 0138999999999999964
Q ss_pred CCCCCCCCcccccccc-----cceEEEEeeEe
Q 021056 229 ASTDSTSLHGSCPVIE-----GEKWSATKWIH 255 (318)
Q Consensus 229 g~~d~~~lH~g~PV~~-----G~K~i~~~Wi~ 255 (318)
...+|+..||.. |+|+++.-+.|
T Consensus 143 ----~~~~Hgvtpv~~~~~~~~~R~slvfy~h 170 (171)
T PF12851_consen 143 ----KRELHGVTPVESPNRNHGTRISLVFYQH 170 (171)
T ss_pred ----cceeeecCcccCCCCCCCeEEEEEEEeE
Confidence 359999999997 99999987765
No 26
>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional
Probab=95.85 E-value=0.31 Score=44.00 Aligned_cols=160 Identities=19% Similarity=0.191 Sum_probs=90.5
Q ss_pred cCCCEEEEcCCCCHHHHHHHHHHHhcc-----cccceeEeCC--------CCc--c--cccceeccccc-ccCCcc---h
Q 021056 58 WNPRAFIYKGFLSDEECDHLIDLAKDK-----LETSMVADNE--------SGK--S--IASEVRTSSGM-FLSKAQ---D 116 (318)
Q Consensus 58 ~~P~i~ii~nfLs~~EC~~Li~~a~~~-----l~~s~v~~~~--------~g~--~--~~~~~R~s~~~-~l~~~~---~ 116 (318)
..|.++++++|. .+|.++|++..+.- +..-.+-++. -|+ . ....+|-|... .-.... .
T Consensus 16 ~~~g~~~~~~~~-~~~~~~l~~~~~~~~~~~p~~~~~~~gg~~msv~mt~~G~~~W~~d~~~YrYs~~~~~~~~pwp~~P 94 (213)
T PRK15401 16 LAPGAVLLRGFA-LAAAEALLAAIEAVAAQAPFRHMVTPGGYTMSVAMTNCGALGWVTDRRGYRYSPIDPLTGKPWPAMP 94 (213)
T ss_pred cCCCcEEeCCCC-HHHHHHHHHHHHHHHhcCCccceecCCCCcceeEEeccccceEecCCCCcccCCcCCCCCCCCCCch
Confidence 567899999996 88888887776551 2221111000 010 0 00123333211 000001 2
Q ss_pred HHHHHHHHHHHHhhCCCCCCCccceEEecCCCCCcccccCCCCccccccCCCceEEEEEEEecCCCCCcceeecCCcccc
Q 021056 117 EIVASIEARIAAWTFLPPENGEAMQILHYEHGQKYEPHFDFFRDKMNQQLGGHRIATVLMYLSHVEKGGETVFPNSEVSQ 196 (318)
Q Consensus 117 ~v~~~i~~Ri~~~~glp~~~~E~~qv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnD~~eGGeT~Fp~~~~~~ 196 (318)
+.+..|.++++...+.+....+..-|..|.+|+.-.+|.|..... ...-++++-+ |.+-.|.....
T Consensus 95 ~~l~~L~~~~~~~~~~~~~~p~a~LvN~Y~~G~~mg~H~D~~E~~-----~~~pI~SvSL-------G~~~~F~~~~~-- 160 (213)
T PRK15401 95 ASFLALAQRAAAAAGFPGFQPDACLINRYAPGAKLSLHQDKDERD-----FRAPIVSVSL-------GLPAVFQFGGL-- 160 (213)
T ss_pred HHHHHHHHHHHHHcCCCCCCCCEEEEEeccCcCccccccCCCccc-----CCCCEEEEeC-------CCCeEEEeccc--
Confidence 367888899988877654455668899999999999999964211 1222444332 33444543210
Q ss_pred cCCCCcchhcCCCeEEeCCCCCEEEEeecCCCCCCCCCCCccccccccc
Q 021056 197 SRDGNWSECARRGYAVKPMKGDALLFFSLHPDASTDSTSLHGSCPVIEG 245 (318)
Q Consensus 197 ~~~~~~~~c~~~~~~VkP~~G~allF~n~~~~g~~d~~~lH~g~PV~~G 245 (318)
+. .....+|.-.-|++||+- |.. ...+|++-++..|
T Consensus 161 -~~------~~~~~~l~L~~Gdllvm~-----G~s-r~~~HgVp~~~~~ 196 (213)
T PRK15401 161 -KR------SDPLQRILLEHGDVVVWG-----GPS-RLRYHGILPLKAG 196 (213)
T ss_pred -CC------CCceEEEEeCCCCEEEEC-----chH-hheeccCCcCCCC
Confidence 00 012478999999999993 332 3577999888764
No 27
>PHA02923 hypothetical protein; Provisional
Probab=94.82 E-value=0.26 Score=46.31 Aligned_cols=101 Identities=14% Similarity=0.179 Sum_probs=68.1
Q ss_pred hHHHHHHHHHHHHhhCCC--CCCCccceEEecCCCCCcccccCCCCccccccCCCceEEEEEEEecCCCCCcceeecCCc
Q 021056 116 DEIVASIEARIAAWTFLP--PENGEAMQILHYEHGQKYEPHFDFFRDKMNQQLGGHRIATVLMYLSHVEKGGETVFPNSE 193 (318)
Q Consensus 116 ~~v~~~i~~Ri~~~~glp--~~~~E~~qv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnD~~eGGeT~Fp~~~ 193 (318)
+++...|++.|-.-+... ......+.+..|++|.+ .|. . ....-..+++||+.+.+||+|.|+..+
T Consensus 43 ~di~~~ir~liy~elk~v~~V~V~n~iT~ikYekgd~--~~l--~--------~~~~~y~LvLyL~~p~~GGt~i~~~~~ 110 (315)
T PHA02923 43 IDISECIREILYKQFKNVRNIEVSSTISFIKYNPFND--TTL--T--------DDNMGYYLVIYLNRPKSGKTLIYPTPE 110 (315)
T ss_pred hHHHHHHHHHHHHhccCcceEEEeceEEEEEEcCCCc--cee--e--------cCceEEEEEEEEeccCCCCeEEEecCC
Confidence 567777777665432221 12234588999999985 111 1 123778899999999999999998752
Q ss_pred ccccCCCCcchhcCCCeEEeCCCCCEEEEeecCCCCCCCCCCCcccccccccceEEEEeeEee
Q 021056 194 VSQSRDGNWSECARRGYAVKPMKGDALLFFSLHPDASTDSTSLHGSCPVIEGEKWSATKWIHV 256 (318)
Q Consensus 194 ~~~~~~~~~~~c~~~~~~VkP~~G~allF~n~~~~g~~d~~~lH~g~PV~~G~K~i~~~Wi~~ 256 (318)
-.|.- + +-++| |-...|+..-|.+|.|.+|-. +-.
T Consensus 111 ----------------t~i~~-~-~DvLF---------dKsl~h~s~~V~~G~K~VAl~-V~l 145 (315)
T PHA02923 111 ----------------TVITS-S-EDIMF---------SKSLNFRFENVKRGYKLVMCS-ISL 145 (315)
T ss_pred ----------------CeEee-c-cceee---------ecccccceeeeecCcEEEEEE-EEE
Confidence 11221 2 23556 568999999999999998776 544
No 28
>KOG3200 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.62 E-value=0.12 Score=45.03 Aligned_cols=97 Identities=14% Similarity=0.183 Sum_probs=58.9
Q ss_pred EeccCCCEEEEcCCCCHHHHHHHHHHHhcccccc-eeEeCC----CCcccccceecccccccCCcchHHHHHHHHHHHHh
Q 021056 55 QLSWNPRAFIYKGFLSDEECDHLIDLAKDKLETS-MVADNE----SGKSIASEVRTSSGMFLSKAQDEIVASIEARIAAW 129 (318)
Q Consensus 55 ~ls~~P~i~ii~nfLs~~EC~~Li~~a~~~l~~s-~v~~~~----~g~~~~~~~R~s~~~~l~~~~~~v~~~i~~Ri~~~ 129 (318)
++...|.+++|+||+++||-..+++-.+..-++- .+..+. -|.-+ -....++..-.+-.+.+..+|..+
T Consensus 7 ~V~~~pt~~YIPnfIt~EEe~~~lshIe~ap~pkW~~L~NRRLqNyGGvv------h~~glipeelP~wLq~~v~kinnl 80 (224)
T KOG3200|consen 7 IVKSAPTMIYIPNFITEEEENLYLSHIENAPQPKWRVLANRRLQNYGGVV------HKTGLIPEELPPWLQYYVDKINNL 80 (224)
T ss_pred EecccceEEEcCCccChHHHHHHHHHHhcCCCchhHHHHhhhhhhcCCcc------ccCCcCccccCHHHHHHHHHhhcc
Confidence 4566789999999999999999988776421110 000000 01111 111233332245566777777754
Q ss_pred hCCCCCCCccceEEecCCCCCcccccCCC
Q 021056 130 TFLPPENGEAMQILHYEHGQKYEPHFDFF 158 (318)
Q Consensus 130 ~glp~~~~E~~qv~rY~~G~~y~~H~D~~ 158 (318)
.-++ ......-|..|.+||.--||.|+.
T Consensus 81 glF~-s~~NHVLVNeY~pgqGImPHtDGP 108 (224)
T KOG3200|consen 81 GLFK-SPANHVLVNEYLPGQGIMPHTDGP 108 (224)
T ss_pred cccC-CCcceeEeecccCCCCcCcCCCCC
Confidence 3233 244567888999999999999985
No 29
>COG3826 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.17 E-value=0.48 Score=41.65 Aligned_cols=102 Identities=22% Similarity=0.227 Sum_probs=71.8
Q ss_pred cceEEecCCCCCcccccCCCCccccccCCCceEEEEEEEecCC---CCCcceeecCCcccccCCCCcchhcCCCeEEeCC
Q 021056 139 AMQILHYEHGQKYEPHFDFFRDKMNQQLGGHRIATVLMYLSHV---EKGGETVFPNSEVSQSRDGNWSECARRGYAVKPM 215 (318)
Q Consensus 139 ~~qv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnD~---~eGGeT~Fp~~~~~~~~~~~~~~c~~~~~~VkP~ 215 (318)
..-++.|++|++=-.|.|-.-+. -=-+-+.|.|+|+ +.|||.+.-.....+ +..+-.|.-.
T Consensus 125 TpLlLqYgpgD~NcLHQDLYGel-------vFPLQvailLsePg~DfTGGEF~lvEQRPR~---------QSr~~vvpLr 188 (236)
T COG3826 125 TPLLLQYGPGDYNCLHQDLYGEL-------VFPLQVAILLSEPGTDFTGGEFVLVEQRPRM---------QSRPTVVPLR 188 (236)
T ss_pred CceeEEecCCccchhhhhhhhce-------eeeeeEEEeccCCCCcccCceEEEEeccccc---------ccCCceeecc
Confidence 35689999999999999965321 1124567789986 479998876543210 1236778889
Q ss_pred CCCEEEEeecCC--CC---CCCCCCCcccccccccceEEEEeeEee
Q 021056 216 KGDALLFFSLHP--DA---STDSTSLHGSCPVIEGEKWSATKWIHV 256 (318)
Q Consensus 216 ~G~allF~n~~~--~g---~~d~~~lH~g~PV~~G~K~i~~~Wi~~ 256 (318)
+|++++|---.. +| -.-....|++.-+.+|+++.+-.=||.
T Consensus 189 qG~g~vFavr~RPv~gtrG~~r~~lRHGvS~lRSG~R~t~GiIFHD 234 (236)
T COG3826 189 QGDGVVFAVRDRPVQGTRGWYRVPLRHGVSRLRSGERHTVGIIFHD 234 (236)
T ss_pred CCceEEEEeecCcccCccCccccchhcchhhhhcccceeeEEEeec
Confidence 999999975321 22 223457899999999999998877764
No 30
>KOG3371 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.39 E-value=0.068 Score=48.91 Aligned_cols=39 Identities=21% Similarity=0.462 Sum_probs=31.4
Q ss_pred CCCcccCCcChHhHhhcCc--CccCccccccccCCcchhhhhcCcCCC
Q 021056 268 DDDCVDEDLNCVVWAKAGE--CKKNPLYMVGSKSSRGYCRKSCKVCKP 313 (318)
Q Consensus 268 ~~~C~d~~~~C~~wa~~ge--C~~np~~m~~~~~~~~~C~~sC~~C~~ 313 (318)
...|+|....|+.|++.+. |. .-.|.- .+|++||+.|..
T Consensus 24 ~~~c~di~~~c~~w~~s~~~~r~-~~~f~~------~nc~~Sc~~c~~ 64 (243)
T KOG3371|consen 24 ARKCRDIYKSCDRWKRSDHSSRP-ITEFFD------LNCATSCGNCSR 64 (243)
T ss_pred hhhhhhhhhhhhhhhhcCccccc-hhHHhh------hhhhhhccCccc
Confidence 3459999999999999883 54 335554 899999999986
No 31
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=90.06 E-value=2.5 Score=39.29 Aligned_cols=109 Identities=15% Similarity=0.177 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHhhCCCCC--------CCccceEEecCCC------CCcccccCCCCccccccCCCceEEEEEEEecCCCC
Q 021056 118 IVASIEARIAAWTFLPPE--------NGEAMQILHYEHG------QKYEPHFDFFRDKMNQQLGGHRIATVLMYLSHVEK 183 (318)
Q Consensus 118 v~~~i~~Ri~~~~glp~~--------~~E~~qv~rY~~G------~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnD~~e 183 (318)
+...|.+-|+...|++.+ ....+++.+|.+- -...+|.|+. .+|+|+. ++ .
T Consensus 88 l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~lrl~~YP~~~~~~~~~g~~~HtD~g------------~lTlL~q-d~--v 152 (262)
T PLN03001 88 LAQKLLAFISESLGLPCSCIEDAVGDFYQNITVSYYPPCPQPELTLGLQSHSDFG------------AITLLIQ-DD--V 152 (262)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHhcCcchhheeecCCCCCCcccccCCcCCcCCC------------eeEEEEe-CC--C
Confidence 344444444444565521 1224788888652 1256788753 5777744 33 3
Q ss_pred CcceeecCCcccccCCCCcchhcCCCeEEeCCCCCEEEEe----ecCCCCCCCCCCCcccccccccceEEEEeeEeec
Q 021056 184 GGETVFPNSEVSQSRDGNWSECARRGYAVKPMKGDALLFF----SLHPDASTDSTSLHGSCPVIEGEKWSATKWIHVR 257 (318)
Q Consensus 184 GGeT~Fp~~~~~~~~~~~~~~c~~~~~~VkP~~G~allF~----n~~~~g~~d~~~lH~g~PV~~G~K~i~~~Wi~~~ 257 (318)
||--+... + ..+.|+|..|..||-- ..+.||.. ..++|++.-....+||++..+++-.
T Consensus 153 ~GLqV~~~--------g-------~Wi~V~p~p~a~vVNiGD~l~~~tng~~-~S~~HRVv~~~~~~R~Sia~F~~p~ 214 (262)
T PLN03001 153 EGLQLLKD--------A-------EWLMVPPISDAILIIIADQTEIITNGNY-KSAQHRAIANANKARLSVATFHDPA 214 (262)
T ss_pred CceEEeeC--------C-------eEEECCCCCCcEEEEccHHHHHHhCCcc-ccccceEEcCCCCCEEEEEEEEcCC
Confidence 56333221 1 2589999999877642 11234433 5789999755556799999887543
No 32
>PLN02485 oxidoreductase
Probab=89.28 E-value=2 Score=41.09 Aligned_cols=91 Identities=14% Similarity=0.108 Sum_probs=56.2
Q ss_pred cceEEecCCCC----------CcccccCCCCccccccCCCceEEEEEEEecCCCCCcceeecCCcccccCCCCcchhcCC
Q 021056 139 AMQILHYEHGQ----------KYEPHFDFFRDKMNQQLGGHRIATVLMYLSHVEKGGETVFPNSEVSQSRDGNWSECARR 208 (318)
Q Consensus 139 ~~qv~rY~~G~----------~y~~H~D~~~~~~~~~~~~~R~~T~liYLnD~~eGGeT~Fp~~~~~~~~~~~~~~c~~~ 208 (318)
.+++++|.+-. .-.+|+|+. .+|+| +.|...||--+.... + .
T Consensus 185 ~lrl~~YP~~~~~~~~~~~~~g~~~HTD~g------------~lTlL--~qd~~~~GLqV~~~~-------g-------~ 236 (329)
T PLN02485 185 VMRIIGYPGVSNLNGPPENDIGCGAHTDYG------------LLTLV--NQDDDITALQVRNLS-------G-------E 236 (329)
T ss_pred eEEEEeCCCCccccCCcccCcccccccCCC------------eEEEE--eccCCCCeeeEEcCC-------C-------c
Confidence 37889997532 235677753 56666 344445664444321 1 2
Q ss_pred CeEEeCCCCCEEEEee----cCCCCCCCCCCCcccccccccceEEEEeeEeecc
Q 021056 209 GYAVKPMKGDALLFFS----LHPDASTDSTSLHGSCPVIEGEKWSATKWIHVRN 258 (318)
Q Consensus 209 ~~~VkP~~G~allF~n----~~~~g~~d~~~lH~g~PV~~G~K~i~~~Wi~~~~ 258 (318)
.+.|+|..|.+||--- .+.+|.. ..++|++.+....+||++.-+++-..
T Consensus 237 Wi~V~p~pg~~vVNiGD~L~~~TnG~~-~St~HRVv~~~~~~R~Si~~F~~p~~ 289 (329)
T PLN02485 237 WIWAIPIPGTFVCNIGDMLKIWSNGVY-QSTLHRVINNSPKYRVCVAFFYETNF 289 (329)
T ss_pred EEECCCCCCcEEEEhHHHHHHHHCCEe-eCCCceecCCCCCCeEEEEEEecCCC
Confidence 5899999998776421 1234432 57999998655558999998875443
No 33
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=88.70 E-value=4.5 Score=39.11 Aligned_cols=88 Identities=20% Similarity=0.338 Sum_probs=54.6
Q ss_pred cceEEecCCCC------CcccccCCCCccccccCCCceEEEEEEEecCCCCCcceeecCCcccccCCCCcchhcCCCeEE
Q 021056 139 AMQILHYEHGQ------KYEPHFDFFRDKMNQQLGGHRIATVLMYLSHVEKGGETVFPNSEVSQSRDGNWSECARRGYAV 212 (318)
Q Consensus 139 ~~qv~rY~~G~------~y~~H~D~~~~~~~~~~~~~R~~T~liYLnD~~eGGeT~Fp~~~~~~~~~~~~~~c~~~~~~V 212 (318)
.+++++|.+-. ...+|.|+. .+|+|+. | ..||--+... + ..+.|
T Consensus 201 ~lRl~~YPp~~~~~~~~g~~aHTD~g------------~lTlL~Q--d-~v~GLQV~~~--------g-------~Wv~V 250 (341)
T PLN02984 201 VIRVYRYPQCSNEAEAPGMEVHTDSS------------VISILNQ--D-EVGGLEVMKD--------G-------EWFNV 250 (341)
T ss_pred eEEEEeCCCCCCcccccCccCccCCC------------ceEEEEe--C-CCCCeeEeeC--------C-------ceEEC
Confidence 58999997521 245677763 5677754 3 2466333321 1 35889
Q ss_pred eCCCCCEEEEee----cCCCCCCCCCCCcccc-cccccceEEEEeeEeec
Q 021056 213 KPMKGDALLFFS----LHPDASTDSTSLHGSC-PVIEGEKWSATKWIHVR 257 (318)
Q Consensus 213 kP~~G~allF~n----~~~~g~~d~~~lH~g~-PV~~G~K~i~~~Wi~~~ 257 (318)
+|..|.+||--- .+.||.. ..++|++. +-...+||++.-+++-.
T Consensus 251 ~p~pgalVVNiGD~Le~wTNg~~-kSt~HRVv~~~~~~~R~Sia~F~~P~ 299 (341)
T PLN02984 251 KPIANTLVVNLGDMMQVISDDEY-KSVLHRVGKRNKKKERYSICYFVFPE 299 (341)
T ss_pred CCCCCeEEEECChhhhhhcCCee-eCCCCccccCCCCCCeEEEEEEecCC
Confidence 999999887531 1234432 56899994 43345799998877443
No 34
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=87.37 E-value=3.5 Score=39.94 Aligned_cols=89 Identities=17% Similarity=0.180 Sum_probs=55.9
Q ss_pred cceEEecCCC------CCcccccCCCCccccccCCCceEEEEEEEecCCCCCcceeecCCcccccCCCCcchhcCCCeEE
Q 021056 139 AMQILHYEHG------QKYEPHFDFFRDKMNQQLGGHRIATVLMYLSHVEKGGETVFPNSEVSQSRDGNWSECARRGYAV 212 (318)
Q Consensus 139 ~~qv~rY~~G------~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnD~~eGGeT~Fp~~~~~~~~~~~~~~c~~~~~~V 212 (318)
.+++.+|.+- -...+|+|+. .+|+| +.|...||--+... + ..+.|
T Consensus 204 ~lRl~~YPp~~~~~~~~g~~~HTD~g------------~lTlL--~qd~~v~GLQV~~~--------g-------~Wi~V 254 (348)
T PLN00417 204 DTRFNMYPPCPRPDKVIGVKPHADGS------------AFTLL--LPDKDVEGLQFLKD--------G-------KWYKA 254 (348)
T ss_pred eeeeeecCCCCCcccccCCcCccCCC------------ceEEE--EecCCCCceeEeEC--------C-------eEEEC
Confidence 3789999641 1245688763 46666 44444566333322 1 25889
Q ss_pred eCCCCCEEEEee----cCCCCCCCCCCCcccccccccceEEEEeeEeec
Q 021056 213 KPMKGDALLFFS----LHPDASTDSTSLHGSCPVIEGEKWSATKWIHVR 257 (318)
Q Consensus 213 kP~~G~allF~n----~~~~g~~d~~~lH~g~PV~~G~K~i~~~Wi~~~ 257 (318)
+|..|.+||--- .+.||. -..++|++.+...++||++.-+++-.
T Consensus 255 ~p~pg~lVVNiGD~Le~~Tng~-~kSt~HRVv~~~~~~R~Si~fF~~P~ 302 (348)
T PLN00417 255 PIVPDTILINVGDQMEIMSNGI-YKSPVHRVVTNREKERISVATFCIPG 302 (348)
T ss_pred CCCCCcEEEEcChHHHHHhCCe-ecccceEEecCCCCCEEEEEEEecCC
Confidence 999998877421 123333 35799999765567899999888543
No 35
>COG3145 AlkB Alkylated DNA repair protein [DNA replication, recombination, and repair]
Probab=86.98 E-value=11 Score=33.59 Aligned_cols=98 Identities=20% Similarity=0.182 Sum_probs=59.3
Q ss_pred eecccccccCCcchHHHHHHHHHHHHhhCCCCCCCccceEEecCCCCCcccccCCCCccccccCCCce--EEEEEEEecC
Q 021056 103 VRTSSGMFLSKAQDEIVASIEARIAAWTFLPPENGEAMQILHYEHGQKYEPHFDFFRDKMNQQLGGHR--IATVLMYLSH 180 (318)
Q Consensus 103 ~R~s~~~~l~~~~~~v~~~i~~Ri~~~~glp~~~~E~~qv~rY~~G~~y~~H~D~~~~~~~~~~~~~R--~~T~liYLnD 180 (318)
+|.+....+.....+....+...+...+|.+....|..-+.+|.+|+.-.+|.|-... ..+ ++++- |
T Consensus 71 y~y~~~~p~~~~p~p~l~~~~~~~~~~~g~~~~~~ea~Lvn~Y~pGd~ig~HqD~~e~-------~~~~~v~slS--L-- 139 (194)
T COG3145 71 YRYSLRSPLTGKPWPPLLALFHDLFGAAGYPFEGPEAVLVNRYRPGASIGWHQDKDEE-------DDRPPVASLS--L-- 139 (194)
T ss_pred ccccccccCCCCCCCccHHHHHHHHHHhcCCCCChhheeEEeccCCCccccccccccc-------cCCCceEEEe--c--
Confidence 4444443333222244455666666677888788888999999999999999997542 123 23332 2
Q ss_pred CCCCcceeecCCcccccCCCCcchhcCCCeEEeCCCCCEEEEe
Q 021056 181 VEKGGETVFPNSEVSQSRDGNWSECARRGYAVKPMKGDALLFF 223 (318)
Q Consensus 181 ~~eGGeT~Fp~~~~~~~~~~~~~~c~~~~~~VkP~~G~allF~ 223 (318)
|....|-.... + . .....++.-..|++|++-
T Consensus 140 ---g~~~~F~~~~~---~-----r-~~~~~~~~L~~Gdvvvm~ 170 (194)
T COG3145 140 ---GAPCIFRLRGR---R-----R-RGPGLRLRLEHGDVVVMG 170 (194)
T ss_pred ---CCCeEEEeccc---c-----C-CCCceeEEecCCCEEEec
Confidence 22233322210 0 0 123688999999999994
No 36
>PLN02904 oxidoreductase
Probab=86.77 E-value=6.5 Score=38.24 Aligned_cols=87 Identities=15% Similarity=0.167 Sum_probs=54.0
Q ss_pred cceEEecCCC------CCcccccCCCCccccccCCCceEEEEEEEecCCCCCcceeecCCcccccCCCCcchhcCCCeEE
Q 021056 139 AMQILHYEHG------QKYEPHFDFFRDKMNQQLGGHRIATVLMYLSHVEKGGETVFPNSEVSQSRDGNWSECARRGYAV 212 (318)
Q Consensus 139 ~~qv~rY~~G------~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnD~~eGGeT~Fp~~~~~~~~~~~~~~c~~~~~~V 212 (318)
.+++.+|.+- -.-.+|.|+. .+|+|+ .|+ ||--+.... + ..+.|
T Consensus 209 ~lrl~~YPp~p~~~~~~g~~~HtD~g------------~lTlL~--qd~--~GLQV~~~~-------g-------~Wi~V 258 (357)
T PLN02904 209 VMAVNCYPACPEPEIALGMPPHSDFG------------SLTILL--QSS--QGLQIMDCN-------K-------NWVCV 258 (357)
T ss_pred EEEeeecCCCCCcccccCCcCccCCC------------ceEEEe--cCC--CeeeEEeCC-------C-------CEEEC
Confidence 4788899752 1244677763 578875 453 553333221 1 25899
Q ss_pred eCCCCCEEEEee----cCCCCCCCCCCCcccccccccceEEEEeeEee
Q 021056 213 KPMKGDALLFFS----LHPDASTDSTSLHGSCPVIEGEKWSATKWIHV 256 (318)
Q Consensus 213 kP~~G~allF~n----~~~~g~~d~~~lH~g~PV~~G~K~i~~~Wi~~ 256 (318)
+|..|..||--- .+.||. -..++|++-.....+||++.-+++-
T Consensus 259 ~p~pgalVVNiGD~Le~~TNG~-~kSt~HRVv~~~~~~R~Si~~F~~p 305 (357)
T PLN02904 259 PYIEGALIVQLGDQVEVMSNGI-YKSVVHRVTVNKDYKRLSFASLHSL 305 (357)
T ss_pred CCCCCeEEEEccHHHHHHhCCe-eeccCCcccCCCCCCEEEEEEeecC
Confidence 999998877421 112332 2579999964445689999988754
No 37
>KOG3959 consensus 2-Oxoglutarate- and iron-dependent dioxygenase-related proteins [General function prediction only]
Probab=86.69 E-value=0.89 Score=41.52 Aligned_cols=94 Identities=20% Similarity=0.328 Sum_probs=53.6
Q ss_pred CCEEEEcCCCCHHHHHHHHHHHhcc-ccc--ceeEeCCCCccc---ccceecccccccCCcchHHHHHHHHHHHHhhCCC
Q 021056 60 PRAFIYKGFLSDEECDHLIDLAKDK-LET--SMVADNESGKSI---ASEVRTSSGMFLSKAQDEIVASIEARIAAWTFLP 133 (318)
Q Consensus 60 P~i~ii~nfLs~~EC~~Li~~a~~~-l~~--s~v~~~~~g~~~---~~~~R~s~~~~l~~~~~~v~~~i~~Ri~~~~glp 133 (318)
|.|.+++||||.+|=+.|++....- +.. |.-...+-|-.+ .+.+|+..-+=+ ....+.+.+|+..+-++.
T Consensus 72 pG~~lie~Fls~~Eea~l~~~~D~~pW~~SQSGRRKQdyGPKvNFkk~Klkt~~F~G~----P~~~~~v~rrm~~yp~l~ 147 (306)
T KOG3959|consen 72 PGLTLIENFLSESEEAKLLNMIDTVPWAQSQSGRRKQDYGPKVNFKKKKLKTDTFVGM----PEYADMVLRRMSEYPVLK 147 (306)
T ss_pred CCeeehhhhhccchHhHHHHHhccCchhhhcccccccccCCccchhhhhhccCcccCC----chHHHHHHHHhhccchhh
Confidence 8999999999999999999997652 222 211100111111 133444433333 345666677777654332
Q ss_pred CCCCccce--EEecC--CCCCcccccCCCC
Q 021056 134 PENGEAMQ--ILHYE--HGQKYEPHFDFFR 159 (318)
Q Consensus 134 ~~~~E~~q--v~rY~--~G~~y~~H~D~~~ 159 (318)
. .-++. =+.|+ .|.--+||.|..+
T Consensus 148 g--fqp~EqCnLeYep~kgsaIdpH~DD~W 175 (306)
T KOG3959|consen 148 G--FQPFEQCNLEYEPVKGSAIDPHQDDMW 175 (306)
T ss_pred c--cCcHHHcCcccccccCCccCccccchh
Confidence 1 11111 23476 4888999999765
No 38
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=86.42 E-value=4.5 Score=39.15 Aligned_cols=89 Identities=21% Similarity=0.247 Sum_probs=55.8
Q ss_pred cceEEecCCC------CCcccccCCCCccccccCCCceEEEEEEEecCCCCCcceeecCCcccccCCCCcchhcCCCeEE
Q 021056 139 AMQILHYEHG------QKYEPHFDFFRDKMNQQLGGHRIATVLMYLSHVEKGGETVFPNSEVSQSRDGNWSECARRGYAV 212 (318)
Q Consensus 139 ~~qv~rY~~G------~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnD~~eGGeT~Fp~~~~~~~~~~~~~~c~~~~~~V 212 (318)
.+++.+|.+- -.-.+|+|+. .+|+|+. | ..||--++... ..+.|
T Consensus 198 ~lrl~~YPp~~~~~~~~G~~~HtD~g------------~lTlL~Q--d-~v~GLQV~~~g---------------~Wi~V 247 (348)
T PLN02912 198 HMAINYYPPCPQPELTYGLPGHKDAN------------LITVLLQ--D-EVSGLQVFKDG---------------KWIAV 247 (348)
T ss_pred eeeeeecCCCCChhhcCCcCCCcCCC------------ceEEEEE--C-CCCceEEEECC---------------cEEEC
Confidence 4788899862 1245677763 5677743 4 34664444321 35889
Q ss_pred eCCCCCEEEEe----ecCCCCCCCCCCCcccccccccceEEEEeeEeecc
Q 021056 213 KPMKGDALLFF----SLHPDASTDSTSLHGSCPVIEGEKWSATKWIHVRN 258 (318)
Q Consensus 213 kP~~G~allF~----n~~~~g~~d~~~lH~g~PV~~G~K~i~~~Wi~~~~ 258 (318)
+|..|..||-- ..+.||.. ..++|++.....++||++.-+++-..
T Consensus 248 ~p~pgalvVNiGD~L~~~TNG~~-kSt~HRVv~~~~~~R~Sia~F~~p~~ 296 (348)
T PLN02912 248 NPIPNTFIVNLGDQMQVISNDKY-KSVLHRAVVNTDKERISIPTFYCPSE 296 (348)
T ss_pred CCcCCeEEEEcCHHHHHHhCCEE-EcccccccCCCCCCEEEEEEEecCCC
Confidence 99999877742 11234432 57999996444568999998886443
No 39
>PLN02216 protein SRG1
Probab=85.70 E-value=5.6 Score=38.66 Aligned_cols=89 Identities=18% Similarity=0.224 Sum_probs=54.2
Q ss_pred cceEEecCCC------CCcccccCCCCccccccCCCceEEEEEEEecCCCCCcceeecCCcccccCCCCcchhcCCCeEE
Q 021056 139 AMQILHYEHG------QKYEPHFDFFRDKMNQQLGGHRIATVLMYLSHVEKGGETVFPNSEVSQSRDGNWSECARRGYAV 212 (318)
Q Consensus 139 ~~qv~rY~~G------~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnD~~eGGeT~Fp~~~~~~~~~~~~~~c~~~~~~V 212 (318)
.+++.+|.+- -...+|.|+. .+|+|+ .|...||--+... + ..+.|
T Consensus 211 ~lRl~~YPp~p~~~~~~G~~~HtD~g------------~lTlL~--q~~~v~GLQV~~~--------g-------~Wi~V 261 (357)
T PLN02216 211 SIRMNYYPPCPQPDQVIGLTPHSDAV------------GLTILL--QVNEVEGLQIKKD--------G-------KWVSV 261 (357)
T ss_pred eeEEeecCCCCCcccccCccCcccCc------------eEEEEE--ecCCCCceeEEEC--------C-------EEEEC
Confidence 5788889652 1245677752 466664 3333566434322 1 25889
Q ss_pred eCCCCCEEEEee----cCCCCCCCCCCCcccccccccceEEEEeeEeec
Q 021056 213 KPMKGDALLFFS----LHPDASTDSTSLHGSCPVIEGEKWSATKWIHVR 257 (318)
Q Consensus 213 kP~~G~allF~n----~~~~g~~d~~~lH~g~PV~~G~K~i~~~Wi~~~ 257 (318)
+|..|..||--- .+.||.. ..++|++......+||++.-+++-.
T Consensus 262 ~p~pgalvVNiGD~L~~~TNG~~-kS~~HRVv~~~~~~R~Si~~F~~P~ 309 (357)
T PLN02216 262 KPLPNALVVNVGDILEIITNGTY-RSIEHRGVVNSEKERLSVATFHNTG 309 (357)
T ss_pred CCCCCeEEEEcchhhHhhcCCee-eccCceeecCCCCCEEEEEEEecCC
Confidence 999998777421 1234432 5799998644456899998887533
No 40
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=85.67 E-value=7.1 Score=37.54 Aligned_cols=89 Identities=18% Similarity=0.227 Sum_probs=54.7
Q ss_pred cceEEecCCCC------CcccccCCCCccccccCCCceEEEEEEEecCCCCCcceeecCCcccccCCCCcchhcCCCeEE
Q 021056 139 AMQILHYEHGQ------KYEPHFDFFRDKMNQQLGGHRIATVLMYLSHVEKGGETVFPNSEVSQSRDGNWSECARRGYAV 212 (318)
Q Consensus 139 ~~qv~rY~~G~------~y~~H~D~~~~~~~~~~~~~R~~T~liYLnD~~eGGeT~Fp~~~~~~~~~~~~~~c~~~~~~V 212 (318)
.+++.+|.+-. ...+|+|+. .+|+|+ .|...||--++.. + ..+.|
T Consensus 191 ~lrl~~YP~~~~~~~~~g~~~HTD~g------------~lTlL~--qd~~v~GLQV~~~--------g-------~Wi~V 241 (337)
T PLN02639 191 HMAVNYYPPCPEPELTYGLPAHTDPN------------ALTILL--QDQQVAGLQVLKD--------G-------KWVAV 241 (337)
T ss_pred EEEEEcCCCCCCcccccCCCCCcCCC------------ceEEEE--ecCCcCceEeecC--------C-------eEEec
Confidence 57888887521 245677753 567764 3433566333322 1 35899
Q ss_pred eCCCCCEEEEee----cCCCCCCCCCCCcccccccccceEEEEeeEeec
Q 021056 213 KPMKGDALLFFS----LHPDASTDSTSLHGSCPVIEGEKWSATKWIHVR 257 (318)
Q Consensus 213 kP~~G~allF~n----~~~~g~~d~~~lH~g~PV~~G~K~i~~~Wi~~~ 257 (318)
+|..|.+||--- .+.||.. ..++|++-.....+||++.-+++-.
T Consensus 242 ~p~pg~lVVNiGD~L~~~TNG~~-kSt~HRVv~~~~~~R~Sia~F~~p~ 289 (337)
T PLN02639 242 NPHPGAFVINIGDQLQALSNGRY-KSVWHRAVVNTDKERMSVASFLCPC 289 (337)
T ss_pred cCCCCeEEEechhHHHHHhCCee-eccCcccccCCCCCEEEEEEEecCC
Confidence 999998887421 1234432 5699999544456899999888543
No 41
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase
Probab=84.94 E-value=8 Score=36.99 Aligned_cols=89 Identities=13% Similarity=0.228 Sum_probs=56.3
Q ss_pred cceEEecCCC------CCcccccCCCCccccccCCCceEEEEEEEecCCCCCcceeecCCcccccCCCCcchhcCCCeEE
Q 021056 139 AMQILHYEHG------QKYEPHFDFFRDKMNQQLGGHRIATVLMYLSHVEKGGETVFPNSEVSQSRDGNWSECARRGYAV 212 (318)
Q Consensus 139 ~~qv~rY~~G------~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnD~~eGGeT~Fp~~~~~~~~~~~~~~c~~~~~~V 212 (318)
.+++++|.+- ....+|+|+. .+|+| +.|...||--+... + ..+.|
T Consensus 159 ~lRl~~YPp~~~~~~~~G~~~HTD~g------------~lTlL--~qd~~v~GLQV~~~--------g-------~Wi~V 209 (321)
T PLN02299 159 GTKVSNYPPCPKPDLVKGLRAHTDAG------------GIILL--FQDDKVSGLQLLKD--------G-------EWVDV 209 (321)
T ss_pred eeeeEecCCCCCcccccCccCccCCC------------eEEEE--EecCCCCCcCcccC--------C-------eEEEC
Confidence 3789999752 1255788863 56666 45444566333322 1 25889
Q ss_pred eCCCCCEEEEee----cCCCCCCCCCCCcccccccccceEEEEeeEeec
Q 021056 213 KPMKGDALLFFS----LHPDASTDSTSLHGSCPVIEGEKWSATKWIHVR 257 (318)
Q Consensus 213 kP~~G~allF~n----~~~~g~~d~~~lH~g~PV~~G~K~i~~~Wi~~~ 257 (318)
+|..|.+||--- .+.||.. ..++|++.....++||++.-+++-.
T Consensus 210 ~p~pg~lvVNiGD~l~~~Tng~~-kS~~HRVv~~~~~~R~Si~~F~~p~ 257 (321)
T PLN02299 210 PPMRHSIVVNLGDQLEVITNGKY-KSVMHRVVAQTDGNRMSIASFYNPG 257 (321)
T ss_pred CCCCCeEEEEeCHHHHHHhCCce-ecccceeecCCCCCEEEEEEEecCC
Confidence 999998876421 1234433 5799999755567899999888644
No 42
>PLN02403 aminocyclopropanecarboxylate oxidase
Probab=84.23 E-value=4.9 Score=38.16 Aligned_cols=89 Identities=16% Similarity=0.226 Sum_probs=53.5
Q ss_pred ceEEecCCC----C--CcccccCCCCccccccCCCceEEEEEEEecCCCCCcceeecCCcccccCCCCcchhcCCCeEEe
Q 021056 140 MQILHYEHG----Q--KYEPHFDFFRDKMNQQLGGHRIATVLMYLSHVEKGGETVFPNSEVSQSRDGNWSECARRGYAVK 213 (318)
Q Consensus 140 ~qv~rY~~G----~--~y~~H~D~~~~~~~~~~~~~R~~T~liYLnD~~eGGeT~Fp~~~~~~~~~~~~~~c~~~~~~Vk 213 (318)
+++++|.+- . ...+|+|+. .+|+| +.+...|| ++.... + ..+.|.
T Consensus 155 lrl~~YP~~~~~~~~~G~~~HtD~g------------~lTlL--~q~~~v~G-LqV~~~-------g-------~Wi~V~ 205 (303)
T PLN02403 155 TKVAKYPECPRPELVRGLREHTDAG------------GIILL--LQDDQVPG-LEFLKD-------G-------KWVPIP 205 (303)
T ss_pred eeeEcCCCCCCcccccCccCccCCC------------eEEEE--EecCCCCc-eEeccC-------C-------eEEECC
Confidence 789999642 1 245788863 45555 34333455 333221 1 258899
Q ss_pred CCCCCEEEEee-----cCCCCCCCCCCCcccccccccceEEEEeeEeecc
Q 021056 214 PMKGDALLFFS-----LHPDASTDSTSLHGSCPVIEGEKWSATKWIHVRN 258 (318)
Q Consensus 214 P~~G~allF~n-----~~~~g~~d~~~lH~g~PV~~G~K~i~~~Wi~~~~ 258 (318)
|..|++++-.- .+.||.. ..++|++-....++||++.-+++-..
T Consensus 206 p~p~~~lvVNvGD~L~~~Tng~~-~S~~HRVv~~~~~~R~Si~~F~~p~~ 254 (303)
T PLN02403 206 PSKNNTIFVNTGDQLEVLSNGRY-KSTLHRVMADKNGSRLSIATFYNPAG 254 (303)
T ss_pred CCCCCEEEEEehHHHHHHhCCee-ecccceeecCCCCCEEEEEEEEcCCC
Confidence 99975554421 1234433 57899998666778999998886443
No 43
>TIGR00568 alkb DNA alkylation damage repair protein AlkB. Proteins in this family have an as of yet undetermined function in the repair of alkylation damage to DNA. Alignment and family designation based on phylogenomic analysis of Jonathan A. Eisen (PhD Thesis, Stanford University, 1999).
Probab=84.16 E-value=9.6 Score=33.11 Aligned_cols=86 Identities=17% Similarity=0.175 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHhhCCCCCCCccceEEecCCCCCcccccCCCCccccccCCCceEEEEEEEecCCCCCcceeecCCcccc
Q 021056 117 EIVASIEARIAAWTFLPPENGEAMQILHYEHGQKYEPHFDFFRDKMNQQLGGHRIATVLMYLSHVEKGGETVFPNSEVSQ 196 (318)
Q Consensus 117 ~v~~~i~~Ri~~~~glp~~~~E~~qv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnD~~eGGeT~Fp~~~~~~ 196 (318)
+.+..|.++|+...+.+....+..-|..|..|+.-.+|.|..... ...-++++- | |-.-.|-....
T Consensus 74 ~~L~~L~~~v~~~~g~~~~~~n~~LvN~Y~~Gd~mg~H~D~~e~~-----~~~pI~SvS--L-----G~~r~F~~~~~-- 139 (169)
T TIGR00568 74 QDLGDLCERVATAAGFPDFQPDACLVNRYAPGATLSLHQDRDEPD-----LRAPLLSVS--L-----GLPAIFLIGGL-- 139 (169)
T ss_pred HHHHHHHHHHHHHhCCCCCCCCEEEEEeecCCCcccccccccccc-----CCCCEEEEe--C-----CCCEEEEecCC--
Confidence 678889999998888765566678899999999999999942211 112233222 2 33334433210
Q ss_pred cCCCCcchhcCCCeEEeCCCCCEEEEe
Q 021056 197 SRDGNWSECARRGYAVKPMKGDALLFF 223 (318)
Q Consensus 197 ~~~~~~~~c~~~~~~VkP~~G~allF~ 223 (318)
.+ .+....+.-..|++|++-
T Consensus 140 ~~-------~~~~~~l~L~sGsllvM~ 159 (169)
T TIGR00568 140 KR-------NDPPKRLRLHSGDVVIMG 159 (169)
T ss_pred cC-------CCceEEEEeCCCCEEEEC
Confidence 00 012478999999999994
No 44
>PLN02276 gibberellin 20-oxidase
Probab=83.97 E-value=11 Score=36.80 Aligned_cols=87 Identities=23% Similarity=0.264 Sum_probs=55.0
Q ss_pred cceEEecCCCC------CcccccCCCCccccccCCCceEEEEEEEecCCCCCcceeecCCcccccCCCCcchhcCCCeEE
Q 021056 139 AMQILHYEHGQ------KYEPHFDFFRDKMNQQLGGHRIATVLMYLSHVEKGGETVFPNSEVSQSRDGNWSECARRGYAV 212 (318)
Q Consensus 139 ~~qv~rY~~G~------~y~~H~D~~~~~~~~~~~~~R~~T~liYLnD~~eGGeT~Fp~~~~~~~~~~~~~~c~~~~~~V 212 (318)
-+++.+|.+.. .-.+|+|+. .+|+|+- | ..||--++... ..+.|
T Consensus 207 ~lrl~~YP~~~~~~~~~g~~~HTD~g------------~lTlL~Q--d-~v~GLQV~~~g---------------~Wi~V 256 (361)
T PLN02276 207 IMRCNYYPPCQEPELTLGTGPHCDPT------------SLTILHQ--D-QVGGLQVFVDN---------------KWRSV 256 (361)
T ss_pred eeeeEeCCCCCCcccccCCccccCCc------------eeEEEEe--c-CCCceEEEECC---------------EEEEc
Confidence 47888896531 245677753 5677753 4 45664444321 25899
Q ss_pred eCCCCCEEEEee----cCCCCCCCCCCCcccccccccceEEEEeeEee
Q 021056 213 KPMKGDALLFFS----LHPDASTDSTSLHGSCPVIEGEKWSATKWIHV 256 (318)
Q Consensus 213 kP~~G~allF~n----~~~~g~~d~~~lH~g~PV~~G~K~i~~~Wi~~ 256 (318)
+|..|.+||--- .+.||.. ..++|++......+||++.-+++-
T Consensus 257 ~p~pgalVVNiGD~L~~~TNG~~-kSt~HRVv~~~~~~R~Sia~F~~P 303 (361)
T PLN02276 257 RPRPGALVVNIGDTFMALSNGRY-KSCLHRAVVNSERERRSLAFFLCP 303 (361)
T ss_pred CCCCCeEEEEcHHHHHHHhCCcc-ccccceeecCCCCCEEEEEEEecC
Confidence 999999888531 1234432 579999864445689999988753
No 45
>PLN02997 flavonol synthase
Probab=83.92 E-value=4.7 Score=38.65 Aligned_cols=89 Identities=13% Similarity=0.147 Sum_probs=55.6
Q ss_pred cceEEecCCC------CCcccccCCCCccccccCCCceEEEEEEEecCCCCCcceeecCCcccccCCCCcchhcCCCeEE
Q 021056 139 AMQILHYEHG------QKYEPHFDFFRDKMNQQLGGHRIATVLMYLSHVEKGGETVFPNSEVSQSRDGNWSECARRGYAV 212 (318)
Q Consensus 139 ~~qv~rY~~G------~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnD~~eGGeT~Fp~~~~~~~~~~~~~~c~~~~~~V 212 (318)
.+++.+|.+- -...+|.|+. .+|+|+. | ..||--+.... ..+.|
T Consensus 184 ~lRl~~YP~~~~~~~~~g~~~HTD~g------------~lTlL~Q--d-~v~GLQV~~~g---------------~Wi~V 233 (325)
T PLN02997 184 VLRVNFYPPTQDTELVIGAAAHSDMG------------AIALLIP--N-EVPGLQAFKDE---------------QWLDL 233 (325)
T ss_pred eeeeecCCCCCCcccccCccCccCCC------------ceEEEec--C-CCCCEEEeECC---------------cEEEC
Confidence 4788899752 1256777763 5777743 3 25663343321 35899
Q ss_pred eCCCCCEEEEee----cCCCCCCCCCCCcccccccccceEEEEeeEeecc
Q 021056 213 KPMKGDALLFFS----LHPDASTDSTSLHGSCPVIEGEKWSATKWIHVRN 258 (318)
Q Consensus 213 kP~~G~allF~n----~~~~g~~d~~~lH~g~PV~~G~K~i~~~Wi~~~~ 258 (318)
+|..|.+||--- .+.||.. ..++|++..-...+||++.-+++-..
T Consensus 234 ~p~pgalvVNiGD~Le~~TNG~~-kSt~HRVv~~~~~~R~Si~fF~~P~~ 282 (325)
T PLN02997 234 NYINSAVVVIIGDQLMRMTNGRF-KNVLHRAKTDKERLRISWPVFVAPRA 282 (325)
T ss_pred CCCCCeEEEEechHHHHHhCCcc-ccccceeeCCCCCCEEEEEEEecCCC
Confidence 999998777431 1234433 57899997544567999988875443
No 46
>PLN02365 2-oxoglutarate-dependent dioxygenase
Probab=83.70 E-value=6.3 Score=37.26 Aligned_cols=91 Identities=19% Similarity=0.182 Sum_probs=54.7
Q ss_pred cceEEecCCC------CCcccccCCCCccccccCCCceEEEEEEEecCCCCCcceeecCCcccccCCCCcchhcCCCeEE
Q 021056 139 AMQILHYEHG------QKYEPHFDFFRDKMNQQLGGHRIATVLMYLSHVEKGGETVFPNSEVSQSRDGNWSECARRGYAV 212 (318)
Q Consensus 139 ~~qv~rY~~G------~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnD~~eGGeT~Fp~~~~~~~~~~~~~~c~~~~~~V 212 (318)
.+++++|.+- -.-.+|.|+. .+|+|+ .|...||--+.... ++ ..+.|
T Consensus 150 ~lr~~~YP~~p~~~~~~g~~~HtD~g------------~lTlL~--qd~~~~GLqV~~~~------~g-------~Wi~V 202 (300)
T PLN02365 150 QFRINKYNFTPETVGSSGVQIHTDSG------------FLTILQ--DDENVGGLEVMDPS------SG-------EFVPV 202 (300)
T ss_pred ceeeeecCCCCCccccccccCccCCC------------ceEEEe--cCCCcCceEEEECC------CC-------eEEec
Confidence 5789999431 1245677752 477773 34334563333321 11 25889
Q ss_pred eCCCCCEEEEee----cCCCCCCCCCCCcccccccccceEEEEeeEeec
Q 021056 213 KPMKGDALLFFS----LHPDASTDSTSLHGSCPVIEGEKWSATKWIHVR 257 (318)
Q Consensus 213 kP~~G~allF~n----~~~~g~~d~~~lH~g~PV~~G~K~i~~~Wi~~~ 257 (318)
.|..|..||=-- .+.||.. ..++|++...-..+||++.-++.-.
T Consensus 203 ~p~pga~vVNiGD~l~~~TNG~~-~St~HRVv~~~~~~R~Si~~F~~p~ 250 (300)
T PLN02365 203 DPLPGTLLVNLGDVATAWSNGRL-CNVKHRVQCKEATMRISIASFLLGP 250 (300)
T ss_pred CCCCCeEEEEhhHHHHHHhCCce-ecccceeEcCCCCCEEEEEEEecCC
Confidence 999998887421 1234432 5799999755455899998877543
No 47
>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=83.49 E-value=12 Score=36.44 Aligned_cols=88 Identities=16% Similarity=0.154 Sum_probs=53.7
Q ss_pred cceEEecCCC----C--CcccccCCCCccccccCCCceEEEEEEEecCC-CCCcceeecCCcccccCCCCcchhcCCCeE
Q 021056 139 AMQILHYEHG----Q--KYEPHFDFFRDKMNQQLGGHRIATVLMYLSHV-EKGGETVFPNSEVSQSRDGNWSECARRGYA 211 (318)
Q Consensus 139 ~~qv~rY~~G----~--~y~~H~D~~~~~~~~~~~~~R~~T~liYLnD~-~eGGeT~Fp~~~~~~~~~~~~~~c~~~~~~ 211 (318)
.+++.+|.+- . .-.+|+|+. .+|+|+ .|. ..||--++.. + ..+.
T Consensus 212 ~lR~~~YP~~~~~~~~~g~~~HtD~g------------~lTlL~--qd~~~v~GLQV~~~--------g-------~Wi~ 262 (361)
T PLN02758 212 AVRMNYYPPCSRPDLVLGLSPHSDGS------------ALTVLQ--QGKGSCVGLQILKD--------N-------TWVP 262 (361)
T ss_pred eeeeecCCCCCCcccccCccCccCCc------------eeEEEE--eCCCCCCCeeeeeC--------C-------EEEe
Confidence 4678888642 1 235677753 567774 443 4566333322 1 2588
Q ss_pred EeCCCCCEEEEee----cCCCCCCCCCCCcccccccccceEEEEeeEee
Q 021056 212 VKPMKGDALLFFS----LHPDASTDSTSLHGSCPVIEGEKWSATKWIHV 256 (318)
Q Consensus 212 VkP~~G~allF~n----~~~~g~~d~~~lH~g~PV~~G~K~i~~~Wi~~ 256 (318)
|+|..|..||--- .+.||.. ..++|++......+||++.-+++-
T Consensus 263 V~p~pgalVVNiGD~L~~~SNG~~-kS~~HRVv~~~~~~R~Sia~F~~P 310 (361)
T PLN02758 263 VHPVPNALVINIGDTLEVLTNGKY-KSVEHRAVTNKEKDRLSIVTFYAP 310 (361)
T ss_pred CCCCCCeEEEEccchhhhhcCCee-ecccceeecCCCCCEEEEEEEecC
Confidence 9999998777431 1234432 579999975445579999877753
No 48
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=83.17 E-value=10 Score=36.60 Aligned_cols=91 Identities=20% Similarity=0.185 Sum_probs=55.6
Q ss_pred cceEEecCCC------CCcccccCCCCccccccCCCceEEEEEEEecCCCCCcceeecCCcccccCCCCcchhcCCCeEE
Q 021056 139 AMQILHYEHG------QKYEPHFDFFRDKMNQQLGGHRIATVLMYLSHVEKGGETVFPNSEVSQSRDGNWSECARRGYAV 212 (318)
Q Consensus 139 ~~qv~rY~~G------~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnD~~eGGeT~Fp~~~~~~~~~~~~~~c~~~~~~V 212 (318)
.+++++|.+- -...+|.|+. .+|+|+ .| ..||--++... ++ ..+.|
T Consensus 194 ~lR~~~YPp~~~~~~~~g~~~HtD~g------------~lTlL~--qd-~v~GLQV~~~~------~g-------~Wi~V 245 (345)
T PLN02750 194 FARFNHYPPCPAPHLALGVGRHKDGG------------ALTVLA--QD-DVGGLQISRRS------DG-------EWIPV 245 (345)
T ss_pred EEEEEecCCCCCcccccCcCCCCCCC------------eEEEEe--cC-CCCceEEeecC------CC-------eEEEc
Confidence 5889999752 1356677753 567663 34 34664343211 11 25889
Q ss_pred eCCCCCEEEEe----ecCCCCCCCCCCCcccccccccceEEEEeeEeecc
Q 021056 213 KPMKGDALLFF----SLHPDASTDSTSLHGSCPVIEGEKWSATKWIHVRN 258 (318)
Q Consensus 213 kP~~G~allF~----n~~~~g~~d~~~lH~g~PV~~G~K~i~~~Wi~~~~ 258 (318)
+|..|..||=- ..+.||.. ..++|++......+||++.-+++-..
T Consensus 246 ~p~pg~~vVNiGD~L~~~Tng~~-~St~HRVv~~~~~~R~Si~~F~~P~~ 294 (345)
T PLN02750 246 KPIPDAFIINIGNCMQVWTNDLY-WSAEHRVVVNSQKERFSIPFFFFPSH 294 (345)
T ss_pred cCCCCeEEEEhHHHHHHHhCCee-ecccceeccCCCCCEEEEEEeecCCC
Confidence 99999877731 11234432 57999997555568999998885443
No 49
>COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only]
Probab=81.79 E-value=8.2 Score=36.83 Aligned_cols=92 Identities=16% Similarity=0.276 Sum_probs=61.4
Q ss_pred CCccceEEecCC------CCCcccccCCCCccccccCCCceEEEEEEEecCCCCCcceeecCCcccccCCCCcchhcCCC
Q 021056 136 NGEAMQILHYEH------GQKYEPHFDFFRDKMNQQLGGHRIATVLMYLSHVEKGGETVFPNSEVSQSRDGNWSECARRG 209 (318)
Q Consensus 136 ~~E~~qv~rY~~------G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnD~~eGGeT~Fp~~~~~~~~~~~~~~c~~~~ 209 (318)
.++.++++||.. ++.-+.|.|+. .+|+| +. ...||--+++... ..
T Consensus 172 ~~~~~RLlrYP~~~~~~~~~~~GaHtD~G------------~lTLl--~Q-d~~~GLqv~~~~g--------------~W 222 (322)
T COG3491 172 PNSVLRLLRYPSRPAREGADGVGAHTDYG------------LLTLL--FQ-DDVGGLEVRPPNG--------------GW 222 (322)
T ss_pred chheEEEEecCCCcccccccccccccCCC------------eEEEE--Ee-cccCCeEEecCCC--------------Ce
Confidence 356799999983 34457788863 34443 33 4567766666532 36
Q ss_pred eEEeCCCCCEEEEee----cCCCCCCCCCCCcccccccccceEEEEeeEeec
Q 021056 210 YAVKPMKGDALLFFS----LHPDASTDSTSLHGSCPVIEGEKWSATKWIHVR 257 (318)
Q Consensus 210 ~~VkP~~G~allF~n----~~~~g~~d~~~lH~g~PV~~G~K~i~~~Wi~~~ 257 (318)
+.|.|..|..|+..- ++.+|.. ..+.|+++--..=+||++--++..+
T Consensus 223 l~v~P~pgtlvVNiGdmLe~~Tng~l-rST~HRV~~~~~~~R~SipfF~~p~ 273 (322)
T COG3491 223 LDVPPIPGTLVVNIGDMLERWTNGRL-RSTVHRVRNPPGVDRYSIPFFLEPN 273 (322)
T ss_pred eECCCCCCeEEEeHHHHHHHHhCCee-ccccceeecCCCccceeeeeeccCC
Confidence 999999999999752 1234433 5799999866544899988776443
No 50
>PF06822 DUF1235: Protein of unknown function (DUF1235); InterPro: IPR009641 This family contains a number of poxviral proteins, which include Vaccinia virus, A37, the function of which is unknown.
Probab=81.38 E-value=13 Score=34.71 Aligned_cols=107 Identities=19% Similarity=0.277 Sum_probs=76.9
Q ss_pred hHHHHHHHHHHHHhhCCCCCCCccceEEecCCCCCcccccCCCCccccccCCCceEEEEEEEecCCCCCcceeecCCccc
Q 021056 116 DEIVASIEARIAAWTFLPPENGEAMQILHYEHGQKYEPHFDFFRDKMNQQLGGHRIATVLMYLSHVEKGGETVFPNSEVS 195 (318)
Q Consensus 116 ~~v~~~i~~Ri~~~~glp~~~~E~~qv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnD~~eGGeT~Fp~~~~~ 195 (318)
..++..|++.+.+ +.-..+.+++..|+.|+-++.-.+ ...+..++|+-|.....||..++-....
T Consensus 32 ~~i~~EI~kh~~e----~V~~~~~i~i~~f~~~~~~~~~~~----------~~~~~sr~lvCi~sakkGG~iii~~~~~- 96 (266)
T PF06822_consen 32 KIILSEIEKHINE----PVYVNNLISIQVFDKGQCYKSRIQ----------DNSSLSRILVCIQSAKKGGCIIIRNTIS- 96 (266)
T ss_pred HHHHHHHHHhcCC----eEEecCcEEEEEEeCCCceecccc----------CCCcceeEEEEeeccccCCeEEEeeccc-
Confidence 4566666666533 333566899999999998742111 1245788999999999999888765421
Q ss_pred ccCCCCcchhcCCCeEEeCCCCCEEEEeecCCCCCCCCCCCcccccccccceEEEEeeEeec
Q 021056 196 QSRDGNWSECARRGYAVKPMKGDALLFFSLHPDASTDSTSLHGSCPVIEGEKWSATKWIHVR 257 (318)
Q Consensus 196 ~~~~~~~~~c~~~~~~VkP~~G~allF~n~~~~g~~d~~~lH~g~PV~~G~K~i~~~Wi~~~ 257 (318)
...-.++|..|.||+-- +.....+.+|.+|.-..+..=+...
T Consensus 97 -----------~~kkii~~~~~~aVlLs---------pl~~y~Vs~V~~G~~i~i~l~idIP 138 (266)
T PF06822_consen 97 -----------NDKKIITPNQNMAVLLS---------PLADYDVSNVTKGSMIIIVLDIDIP 138 (266)
T ss_pred -----------CCceEEecCCCeEEEec---------chhheEEEEecCCcEEEEEEEeccC
Confidence 23578999999999984 4678889999999887777665443
No 51
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase
Probab=81.31 E-value=12 Score=36.43 Aligned_cols=91 Identities=13% Similarity=0.143 Sum_probs=55.5
Q ss_pred cceEEecCCC------CCcccccCCCCccccccCCCceEEEEEEEecCCCCCcceeecCCcccccCCCCcchhcCCCeEE
Q 021056 139 AMQILHYEHG------QKYEPHFDFFRDKMNQQLGGHRIATVLMYLSHVEKGGETVFPNSEVSQSRDGNWSECARRGYAV 212 (318)
Q Consensus 139 ~~qv~rY~~G------~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnD~~eGGeT~Fp~~~~~~~~~~~~~~c~~~~~~V 212 (318)
.+++.+|.+- -...+|.|+. .+|+|+. | ..||--+..... ...+.|
T Consensus 196 ~lrl~~YP~~~~~~~~~G~~~HTD~g------------~lTlL~Q--d-~v~GLQV~~~~~-------------~~Wi~V 247 (358)
T PLN02515 196 KVVVNYYPKCPQPDLTLGLKRHTDPG------------TITLLLQ--D-QVGGLQATRDGG-------------KTWITV 247 (358)
T ss_pred eEEEeecCCCCChhhccCCCCCCCCC------------eEEEEec--C-CCCceEEEECCC-------------CeEEEC
Confidence 4678888752 1355787763 5677744 3 245533322210 125899
Q ss_pred eCCCCCEEEEee----cCCCCCCCCCCCcccccccccceEEEEeeEeecc
Q 021056 213 KPMKGDALLFFS----LHPDASTDSTSLHGSCPVIEGEKWSATKWIHVRN 258 (318)
Q Consensus 213 kP~~G~allF~n----~~~~g~~d~~~lH~g~PV~~G~K~i~~~Wi~~~~ 258 (318)
+|..|..||=-- .+.||.. ..++|++-....++||++.-+++-..
T Consensus 248 pp~pgalVVNiGD~L~~~TNG~~-kSt~HRVv~~~~~~R~Si~~F~~P~~ 296 (358)
T PLN02515 248 QPVEGAFVVNLGDHGHYLSNGRF-KNADHQAVVNSNCSRLSIATFQNPAP 296 (358)
T ss_pred CCCCCeEEEEccHHHHHHhCCee-eeecceEECCCCCCEEEEEEEecCCC
Confidence 999998777421 1234433 57999986555678999998885443
No 52
>PLN02254 gibberellin 3-beta-dioxygenase
Probab=80.82 E-value=17 Score=35.29 Aligned_cols=88 Identities=19% Similarity=0.229 Sum_probs=54.9
Q ss_pred cceEEecCCC------CCcccccCCCCccccccCCCceEEEEEEEecCCCCCcceeecCCcccccCCCCcchhcCCCeEE
Q 021056 139 AMQILHYEHG------QKYEPHFDFFRDKMNQQLGGHRIATVLMYLSHVEKGGETVFPNSEVSQSRDGNWSECARRGYAV 212 (318)
Q Consensus 139 ~~qv~rY~~G------~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnD~~eGGeT~Fp~~~~~~~~~~~~~~c~~~~~~V 212 (318)
.+++.+|.+- -...+|+|.. .+|+|+. | ..||--++... ...+.|
T Consensus 211 ~lRl~~YPp~p~~~~~~G~~~HtD~g------------~lTiL~Q--d-~v~GLQV~~~~--------------~~Wi~V 261 (358)
T PLN02254 211 ALQLNSYPVCPDPDRAMGLAPHTDSS------------LLTILYQ--S-NTSGLQVFREG--------------VGWVTV 261 (358)
T ss_pred eEEEecCCCCCCcccccCcCCccCCC------------cEEEEec--C-CCCCceEECCC--------------CEEEEc
Confidence 4678888752 1356777753 5777764 3 24664444332 125899
Q ss_pred eCCCCCEEEEee----cCCCCCCCCCCCcccccccccceEEEEeeEee
Q 021056 213 KPMKGDALLFFS----LHPDASTDSTSLHGSCPVIEGEKWSATKWIHV 256 (318)
Q Consensus 213 kP~~G~allF~n----~~~~g~~d~~~lH~g~PV~~G~K~i~~~Wi~~ 256 (318)
+|..|..||--- .+.||. -..++|++-.-...+||++.-+++-
T Consensus 262 ~p~pgalVVNiGD~lq~~SNg~-~kS~~HRVv~~~~~~R~Sia~F~~P 308 (358)
T PLN02254 262 PPVPGSLVVNVGDLLHILSNGR-FPSVLHRAVVNKTRHRISVAYFYGP 308 (358)
T ss_pred ccCCCCEEEEhHHHHHHHhCCe-eccccceeecCCCCCEEEEEEEecC
Confidence 999999888421 123443 2579999954344579999877743
No 53
>PLN02947 oxidoreductase
Probab=80.80 E-value=15 Score=35.94 Aligned_cols=88 Identities=18% Similarity=0.234 Sum_probs=54.4
Q ss_pred cceEEecCCCC------CcccccCCCCccccccCCCceEEEEEEEecCCCCCcceeecCCcccccCCCCcchhcCCCeEE
Q 021056 139 AMQILHYEHGQ------KYEPHFDFFRDKMNQQLGGHRIATVLMYLSHVEKGGETVFPNSEVSQSRDGNWSECARRGYAV 212 (318)
Q Consensus 139 ~~qv~rY~~G~------~y~~H~D~~~~~~~~~~~~~R~~T~liYLnD~~eGGeT~Fp~~~~~~~~~~~~~~c~~~~~~V 212 (318)
.+++.+|.+.. ...+|+|+. .+|+|+. | ..||--++... ..+.|
T Consensus 226 ~lrln~YPp~p~~~~~~G~~~HTD~g------------~lTlL~Q--d-~v~GLQV~~~g---------------~Wi~V 275 (374)
T PLN02947 226 MMVVNCYPACPEPELTLGMPPHSDYG------------FLTLLLQ--D-EVEGLQIMHAG---------------RWVTV 275 (374)
T ss_pred eeeeecCCCCCCcccccCCCCccCCC------------ceEEEEe--c-CCCCeeEeECC---------------EEEeC
Confidence 46777887531 245677753 5777755 3 24664444321 35889
Q ss_pred eCCCCCEEEEe----ecCCCCCCCCCCCcccccccccceEEEEeeEeec
Q 021056 213 KPMKGDALLFF----SLHPDASTDSTSLHGSCPVIEGEKWSATKWIHVR 257 (318)
Q Consensus 213 kP~~G~allF~----n~~~~g~~d~~~lH~g~PV~~G~K~i~~~Wi~~~ 257 (318)
+|..|..||-- ..+.||.. ..++|++......+||++..+++-.
T Consensus 276 ~p~pga~VVNvGD~Lq~~SNG~~-kS~~HRVv~~~~~~R~Sia~F~~P~ 323 (374)
T PLN02947 276 EPIPGSFVVNVGDHLEIFSNGRY-KSVLHRVRVNSTKPRISVASLHSLP 323 (374)
T ss_pred CCCCCeEEEEeCceeeeeeCCEE-eccccccccCCCCCEEEEEEEecCC
Confidence 99998777632 11234433 5799999654456899999888543
No 54
>PTZ00273 oxidase reductase; Provisional
Probab=78.36 E-value=25 Score=33.43 Aligned_cols=88 Identities=20% Similarity=0.274 Sum_probs=53.4
Q ss_pred cceEEecCCCC-------CcccccCCCCccccccCCCceEEEEEEEecCCCCCcceeecCCcccccCCCCcchhcCCCeE
Q 021056 139 AMQILHYEHGQ-------KYEPHFDFFRDKMNQQLGGHRIATVLMYLSHVEKGGETVFPNSEVSQSRDGNWSECARRGYA 211 (318)
Q Consensus 139 ~~qv~rY~~G~-------~y~~H~D~~~~~~~~~~~~~R~~T~liYLnD~~eGGeT~Fp~~~~~~~~~~~~~~c~~~~~~ 211 (318)
.+++++|.+.. .-.+|+|+. .+|+|+ .| ..||--++... + ..+.
T Consensus 178 ~lrl~~YP~~~~~~~~~~g~~~HTD~g------------~lTlL~--qd-~~~GLqV~~~~-------g-------~Wi~ 228 (320)
T PTZ00273 178 VFRMKHYPALPQTKKGRTVCGEHTDYG------------IITLLY--QD-SVGGLQVRNLS-------G-------EWMD 228 (320)
T ss_pred eeeeeecCCCCCccccCcccccccCCC------------eEEEEe--cC-CCCceEEECCC-------C-------CEEe
Confidence 47888897521 134677753 577774 34 34663333321 1 2588
Q ss_pred EeCCCCCEEEEee----cCCCCCCCCCCCcccccccccceEEEEeeEeec
Q 021056 212 VKPMKGDALLFFS----LHPDASTDSTSLHGSCPVIEGEKWSATKWIHVR 257 (318)
Q Consensus 212 VkP~~G~allF~n----~~~~g~~d~~~lH~g~PV~~G~K~i~~~Wi~~~ 257 (318)
|+|..|.+||--- .+.||.. ..++|++... ..+||++.-+++-.
T Consensus 229 V~p~pg~lvVNvGD~l~~~TnG~~-kSt~HRVv~~-~~~R~Si~~F~~p~ 276 (320)
T PTZ00273 229 VPPLEGSFVVNIGDMMEMWSNGRY-RSTPHRVVNT-GVERYSMPFFCEPN 276 (320)
T ss_pred CCCCCCeEEEEHHHHHHHHHCCee-eCCCccccCC-CCCeEEEEEEEcCC
Confidence 9999998877421 1234432 4699999743 45899999887544
No 55
>PLN02704 flavonol synthase
Probab=77.57 E-value=7.6 Score=37.33 Aligned_cols=88 Identities=17% Similarity=0.202 Sum_probs=53.7
Q ss_pred ceEEecCCCC------CcccccCCCCccccccCCCceEEEEEEEecCCCCCcceeecCCcccccCCCCcchhcCCCeEEe
Q 021056 140 MQILHYEHGQ------KYEPHFDFFRDKMNQQLGGHRIATVLMYLSHVEKGGETVFPNSEVSQSRDGNWSECARRGYAVK 213 (318)
Q Consensus 140 ~qv~rY~~G~------~y~~H~D~~~~~~~~~~~~~R~~T~liYLnD~~eGGeT~Fp~~~~~~~~~~~~~~c~~~~~~Vk 213 (318)
+++.+|.+-. ...+|+|+. .+|+|+- |. .||--+... + ..+.|+
T Consensus 201 lrl~~YP~~~~~~~~~g~~~HtD~g------------~lTlL~q--d~-v~GLQV~~~--------g-------~Wi~V~ 250 (335)
T PLN02704 201 LKINYYPPCPRPDLALGVVAHTDMS------------AITILVP--NE-VQGLQVFRD--------D-------HWFDVK 250 (335)
T ss_pred hhhhcCCCCCCcccccCccCccCCc------------ceEEEec--CC-CCceeEeEC--------C-------EEEeCC
Confidence 6777887521 245677763 4666644 32 556333322 1 258899
Q ss_pred CCCCCEEEEee----cCCCCCCCCCCCcccccccccceEEEEeeEeecc
Q 021056 214 PMKGDALLFFS----LHPDASTDSTSLHGSCPVIEGEKWSATKWIHVRN 258 (318)
Q Consensus 214 P~~G~allF~n----~~~~g~~d~~~lH~g~PV~~G~K~i~~~Wi~~~~ 258 (318)
|..|.+||--- .+.||. -..++|++......+||++.-+++-..
T Consensus 251 p~pg~lvVNvGD~L~~~TNg~-~kSt~HRVv~~~~~~R~Si~~F~~p~~ 298 (335)
T PLN02704 251 YIPNALVIHIGDQIEILSNGK-YKSVLHRTTVNKEKTRMSWPVFLEPPS 298 (335)
T ss_pred CCCCeEEEEechHHHHHhCCe-eecccceeecCCCCCeEEEEEEecCCC
Confidence 99998776421 122343 257999996544568999998886443
No 56
>PLN02393 leucoanthocyanidin dioxygenase like protein
Probab=76.74 E-value=22 Score=34.54 Aligned_cols=89 Identities=17% Similarity=0.137 Sum_probs=53.3
Q ss_pred cceEEecCCC------CCcccccCCCCccccccCCCceEEEEEEEecCCCCCcceeecCCcccccCCCCcchhcCCCeEE
Q 021056 139 AMQILHYEHG------QKYEPHFDFFRDKMNQQLGGHRIATVLMYLSHVEKGGETVFPNSEVSQSRDGNWSECARRGYAV 212 (318)
Q Consensus 139 ~~qv~rY~~G------~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnD~~eGGeT~Fp~~~~~~~~~~~~~~c~~~~~~V 212 (318)
.+++.+|.+- -.-.+|+|+. .+|+|+ .+...||--+.... ..+.|
T Consensus 214 ~lRl~~YP~~p~~~~~~g~~~HtD~g------------~lTlL~--q~~~v~GLQV~~~g---------------~W~~V 264 (362)
T PLN02393 214 CLRVNYYPKCPQPDLTLGLSPHSDPG------------GMTILL--PDDNVAGLQVRRDD---------------AWITV 264 (362)
T ss_pred eeeeeecCCCCCcccccccccccCCc------------eEEEEe--eCCCCCcceeeECC---------------EEEEC
Confidence 4778888641 1255777763 456653 34344663333221 25889
Q ss_pred eCCCCCEEEEee----cCCCCCCCCCCCcccccccccceEEEEeeEeec
Q 021056 213 KPMKGDALLFFS----LHPDASTDSTSLHGSCPVIEGEKWSATKWIHVR 257 (318)
Q Consensus 213 kP~~G~allF~n----~~~~g~~d~~~lH~g~PV~~G~K~i~~~Wi~~~ 257 (318)
+|..|.+||--- .+.||.. ..++|++......+||++.-+++-.
T Consensus 265 ~p~pgalVVNiGD~l~~~Tng~~-kSt~HRVv~~~~~~R~SiafF~~P~ 312 (362)
T PLN02393 265 KPVPDAFIVNIGDQIQVLSNAIY-KSVEHRVIVNSAKERVSLAFFYNPK 312 (362)
T ss_pred CCCCCeEEEEcchhhHhhcCCee-eccceecccCCCCCEEEEEEEecCC
Confidence 999998877421 1223322 5689999544445799999888544
No 57
>PLN02156 gibberellin 2-beta-dioxygenase
Probab=74.72 E-value=33 Score=33.09 Aligned_cols=89 Identities=12% Similarity=0.198 Sum_probs=55.7
Q ss_pred cceEEecCCCC--------CcccccCCCCccccccCCCceEEEEEEEecCCCCCcceeecCCcccccCCCCcchhcCCCe
Q 021056 139 AMQILHYEHGQ--------KYEPHFDFFRDKMNQQLGGHRIATVLMYLSHVEKGGETVFPNSEVSQSRDGNWSECARRGY 210 (318)
Q Consensus 139 ~~qv~rY~~G~--------~y~~H~D~~~~~~~~~~~~~R~~T~liYLnD~~eGGeT~Fp~~~~~~~~~~~~~~c~~~~~ 210 (318)
.+++++|.+-. .-.+|+|+. .+|+|+- | ..||--+.... + ..+
T Consensus 179 ~lRl~~YP~~~~~~~~~~~g~~~HTD~g------------~lTlL~Q--d-~v~GLQV~~~~-------g-------~Wi 229 (335)
T PLN02156 179 CLRMNHYPEKEETPEKVEIGFGEHTDPQ------------LISLLRS--N-DTAGLQICVKD-------G-------TWV 229 (335)
T ss_pred eEeEEeCCCCCCCccccccCCCCccCCC------------ceEEEEe--C-CCCceEEEeCC-------C-------CEE
Confidence 58899997521 134577753 5677744 3 34663333221 1 258
Q ss_pred EEeCCCCCEEEEe----ecCCCCCCCCCCCcccccccccceEEEEeeEeec
Q 021056 211 AVKPMKGDALLFF----SLHPDASTDSTSLHGSCPVIEGEKWSATKWIHVR 257 (318)
Q Consensus 211 ~VkP~~G~allF~----n~~~~g~~d~~~lH~g~PV~~G~K~i~~~Wi~~~ 257 (318)
.|.|..|..||-- ..+.||.. ..+.|++......+||++.-+++-.
T Consensus 230 ~Vpp~pga~VVNiGD~l~~wTNg~~-kSt~HRVv~~~~~~R~SiafF~~P~ 279 (335)
T PLN02156 230 DVPPDHSSFFVLVGDTLQVMTNGRF-KSVKHRVVTNTKRSRISMIYFAGPP 279 (335)
T ss_pred EccCCCCcEEEEhHHHHHHHhCCee-eccceeeecCCCCCEEEEEEeecCC
Confidence 9999999888742 11234433 5799999866666899999887544
No 58
>COG4340 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=74.64 E-value=7 Score=34.63 Aligned_cols=65 Identities=23% Similarity=0.368 Sum_probs=39.7
Q ss_pred EEEEecCC--CCCcceeecCCcccccCCCCcchhcCCCeEEeCCCCCEEEEeecCCCCCCCCCCCcccccccccc--eEE
Q 021056 174 VLMYLSHV--EKGGETVFPNSEVSQSRDGNWSECARRGYAVKPMKGDALLFFSLHPDASTDSTSLHGSCPVIEGE--KWS 249 (318)
Q Consensus 174 ~liYLnD~--~eGGeT~Fp~~~~~~~~~~~~~~c~~~~~~VkP~~G~allF~n~~~~g~~d~~~lH~g~PV~~G~--K~i 249 (318)
+.|++-|= -.||||..+..+. ++.++.---..|.+++-. |.+.+|.+||+..-+ +-.
T Consensus 148 I~I~~vDR~NI~gGet~lY~~~~-----------~~p~f~kvl~pGe~~~l~--------Dh~~~H~~tpi~p~t~~q~g 208 (226)
T COG4340 148 IIIMLVDRQNIDGGETDLYAPDG-----------ASPGFFKVLAPGEAVFLD--------DHRVLHGVTPIVPSTSRQRG 208 (226)
T ss_pred EEEEEeeeccccCceEEEEccCC-----------CCcceEEeccCCcEEEec--------cchhcccccceeccchhhcc
Confidence 44555553 3799999876532 122444445667777653 679999999987421 125
Q ss_pred EEeeEeec
Q 021056 250 ATKWIHVR 257 (318)
Q Consensus 250 ~~~Wi~~~ 257 (318)
+.-|+-..
T Consensus 209 ~mdvfvlt 216 (226)
T COG4340 209 AMDVFVLT 216 (226)
T ss_pred ceeEEEEe
Confidence 55666443
No 59
>PLN03178 leucoanthocyanidin dioxygenase; Provisional
Probab=74.11 E-value=13 Score=36.07 Aligned_cols=89 Identities=17% Similarity=0.142 Sum_probs=54.2
Q ss_pred cceEEecCCC------CCcccccCCCCccccccCCCceEEEEEEEecCCCCCcceeecCCcccccCCCCcchhcCCCeEE
Q 021056 139 AMQILHYEHG------QKYEPHFDFFRDKMNQQLGGHRIATVLMYLSHVEKGGETVFPNSEVSQSRDGNWSECARRGYAV 212 (318)
Q Consensus 139 ~~qv~rY~~G------~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnD~~eGGeT~Fp~~~~~~~~~~~~~~c~~~~~~V 212 (318)
.+++.+|.+- -...+|+|+. .+|+|+. | ..||--+... + ..+.|
T Consensus 212 ~lrl~~YP~~~~~~~~~g~~~HTD~g------------~lTlL~q--d-~v~GLQV~~~--------g-------~Wi~V 261 (360)
T PLN03178 212 QMKINYYPRCPQPDLALGVEAHTDVS------------ALTFILH--N-MVPGLQVLYE--------G-------KWVTA 261 (360)
T ss_pred hhheeccCCCCCCccccCcCCccCCC------------ceEEEee--C-CCCceeEeEC--------C-------EEEEc
Confidence 4678889742 1246788763 5777743 3 3456333321 1 25899
Q ss_pred eCCCCCEEEEee----cCCCCCCCCCCCcccccccccceEEEEeeEeecc
Q 021056 213 KPMKGDALLFFS----LHPDASTDSTSLHGSCPVIEGEKWSATKWIHVRN 258 (318)
Q Consensus 213 kP~~G~allF~n----~~~~g~~d~~~lH~g~PV~~G~K~i~~~Wi~~~~ 258 (318)
+|..|.+||--- .+.||.. ..++|++..-...+||++.-+++-..
T Consensus 262 ~p~pg~lvVNiGD~L~~~TNG~~-kSt~HRVv~~~~~~R~Si~~F~~P~~ 310 (360)
T PLN03178 262 KCVPDSIVVHIGDTLEILSNGRY-KSILHRGLVNKEKVRISWAVFCEPPK 310 (360)
T ss_pred CCCCCeEEEEccHHHHHHhCCcc-ccccceeecCCCCCeEEEEEEecCCc
Confidence 999998776321 1234432 57999985333457999998886543
No 60
>PF10014 2OG-Fe_Oxy_2: 2OG-Fe dioxygenase; InterPro: IPR018724 Members of this family of hypothetical bacterial proteins have no known function. Some are described as putative biofilm formation or putative agglutination proteins. ; PDB: 3PL0_B.
Probab=72.22 E-value=7.3 Score=34.55 Aligned_cols=99 Identities=15% Similarity=0.109 Sum_probs=52.2
Q ss_pred hHHHHHHHHHHHHhhCCCCCCCcc----ceEEecCC--CC-----CcccccCCCCccccccCCCceEEEEEEEecCCCCC
Q 021056 116 DEIVASIEARIAAWTFLPPENGEA----MQILHYEH--GQ-----KYEPHFDFFRDKMNQQLGGHRIATVLMYLSHVEKG 184 (318)
Q Consensus 116 ~~v~~~i~~Ri~~~~glp~~~~E~----~qv~rY~~--G~-----~y~~H~D~~~~~~~~~~~~~R~~T~liYLnD~~eG 184 (318)
+++++.|-....++++......++ +.-.|+.. +. -=+.|.|+. ..+++.+|--+++ +|
T Consensus 70 ~~~~~~ll~~~~~~~~~~~~~~~~~~i~vHq~Ri~a~~~~~g~ptPEGiH~DG~----------d~v~~~li~r~Ni-~G 138 (195)
T PF10014_consen 70 NPVLQALLRFDAEIFGWDEDSSEPWHIGVHQIRIIATPDEPGEPTPEGIHRDGV----------DFVFIHLINRHNI-EG 138 (195)
T ss_dssp SHHHHHHHHHHHHHHHCCS-GGGEEEEEEEEEEEETTTS--B--STTSSB--SS----------SEEEEEEEEEESE-EE
T ss_pred CHHHHHHHHHHHHHhcccccCCCCEEEEEEEEEEEEecCccCCcCCCCccCCCC----------CEEEEEEEcCCCc-cC
Confidence 466667666666665544322233 33445543 21 123455553 4567777777666 78
Q ss_pred cceeecCCcccccCCCCcchhcCCCeEEeCCCCCEEEEeecCCCCCCCCCCCcccccccc
Q 021056 185 GETVFPNSEVSQSRDGNWSECARRGYAVKPMKGDALLFFSLHPDASTDSTSLHGSCPVIE 244 (318)
Q Consensus 185 GeT~Fp~~~~~~~~~~~~~~c~~~~~~VkP~~G~allF~n~~~~g~~d~~~lH~g~PV~~ 244 (318)
|+|.....+.. ......--..|+.+++. |.+.+|.+.||..
T Consensus 139 G~s~i~~~~~~-----------~~~~~~l~~p~d~l~~~--------D~~~~H~vtpI~~ 179 (195)
T PF10014_consen 139 GESQIYDNDKE-----------ILFFFTLLEPGDTLLVD--------DRRVWHYVTPIRP 179 (195)
T ss_dssp --EEEEETTSS-----------EEEEE---STTEEEEEE--------TTTEEEEE--EEE
T ss_pred ceEEEEeCCCC-----------cceEEEecCCCCEEEEe--------CCcceECCCceec
Confidence 98887543210 01234556679999984 6899999999985
No 61
>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only]
Probab=71.62 E-value=27 Score=33.43 Aligned_cols=86 Identities=23% Similarity=0.314 Sum_probs=57.6
Q ss_pred cceEEecCCC------CCcccccCCCCccccccCCCceEEEEEEEecCCCCCcceeecCCcccccCCCCcchhcCCCeEE
Q 021056 139 AMQILHYEHG------QKYEPHFDFFRDKMNQQLGGHRIATVLMYLSHVEKGGETVFPNSEVSQSRDGNWSECARRGYAV 212 (318)
Q Consensus 139 ~~qv~rY~~G------~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnD~~eGGeT~Fp~~~~~~~~~~~~~~c~~~~~~V 212 (318)
-+++.+|.+- -...+|.|.. .+|+| |.|...||--+|... + ..+.|
T Consensus 177 ~~r~n~Yp~cp~pe~~lGl~~HtD~~------------~lTiL--lqd~~V~GLQv~~~d-------g-------~Wi~V 228 (322)
T KOG0143|consen 177 VMRLNYYPPCPEPELTLGLGAHTDKS------------FLTIL--LQDDDVGGLQVFTKD-------G-------KWIDV 228 (322)
T ss_pred EEEEeecCCCcCccccccccCccCcC------------ceEEE--EccCCcCceEEEecC-------C-------eEEEC
Confidence 5788889863 2467788863 35555 566567887777511 1 36999
Q ss_pred eCCCCCEEEEeec------CCCCCCCCCCCcccccccccceEEEEeeEe
Q 021056 213 KPMKGDALLFFSL------HPDASTDSTSLHGSCPVIEGEKWSATKWIH 255 (318)
Q Consensus 213 kP~~G~allF~n~------~~~g~~d~~~lH~g~PV~~G~K~i~~~Wi~ 255 (318)
+|.+|..|| |+ +.||. -...+|++..-...+|+++-.++-
T Consensus 229 ~P~p~a~vV--NiGD~l~~lSNG~-ykSv~HRV~~n~~~~R~Sia~F~~ 274 (322)
T KOG0143|consen 229 PPIPGAFVV--NIGDMLQILSNGR-YKSVLHRVVVNGEKERISVAFFVF 274 (322)
T ss_pred CCCCCCEEE--EcccHHhHhhCCc-ccceEEEEEeCCCCceEEEEEEec
Confidence 999976555 33 23453 357999999888888888877663
No 62
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=71.29 E-value=22 Score=34.17 Aligned_cols=92 Identities=18% Similarity=0.259 Sum_probs=54.3
Q ss_pred cceEEecCCCC-------CcccccCCCCccccccCCCceEEEEEEEecCCCCCcceeecCCcccccCCCCcchhcCCCeE
Q 021056 139 AMQILHYEHGQ-------KYEPHFDFFRDKMNQQLGGHRIATVLMYLSHVEKGGETVFPNSEVSQSRDGNWSECARRGYA 211 (318)
Q Consensus 139 ~~qv~rY~~G~-------~y~~H~D~~~~~~~~~~~~~R~~T~liYLnD~~eGGeT~Fp~~~~~~~~~~~~~~c~~~~~~ 211 (318)
.+++++|.+-. ...+|+|+. .+|+|+ .| ..||--++.... ... ...+.
T Consensus 183 ~lrl~~YP~~~~~~~~~~g~~~HTD~g------------~lTlL~--qd-~v~GLQV~~~~~---~~~-------g~Wi~ 237 (332)
T PLN03002 183 TMRLLRYQGISDPSKGIYACGAHSDFG------------MMTLLA--TD-GVMGLQICKDKN---AMP-------QKWEY 237 (332)
T ss_pred heeeeeCCCCCCcccCccccccccCCC------------eEEEEe--eC-CCCceEEecCCC---CCC-------CcEEE
Confidence 47899997521 245677752 578774 34 346644443210 001 13588
Q ss_pred EeCCCCCEEEEe----ecCCCCCCCCCCCcccccccccceEEEEeeEeec
Q 021056 212 VKPMKGDALLFF----SLHPDASTDSTSLHGSCPVIEGEKWSATKWIHVR 257 (318)
Q Consensus 212 VkP~~G~allF~----n~~~~g~~d~~~lH~g~PV~~G~K~i~~~Wi~~~ 257 (318)
|.|..|..||-- ..+.||.. ..++|++..- ..+||++.-+++-.
T Consensus 238 Vpp~pg~~VVNiGD~L~~wTng~~-kSt~HRVv~~-~~~R~Sia~F~~p~ 285 (332)
T PLN03002 238 VPPIKGAFIVNLGDMLERWSNGFF-KSTLHRVLGN-GQERYSIPFFVEPN 285 (332)
T ss_pred CCCCCCeEEEEHHHHHHHHhCCee-ECcCCeecCC-CCCeeEEEEEecCC
Confidence 999999888742 11234432 4789999533 45799998777533
No 63
>PF14033 DUF4246: Protein of unknown function (DUF4246)
Probab=69.11 E-value=17 Score=37.07 Aligned_cols=89 Identities=16% Similarity=0.124 Sum_probs=52.4
Q ss_pred ccccCCCCccccccCCCceEEEEEEEecCC-CCCcceeecCCcc----------cccCC---------CCcchhcCCCeE
Q 021056 152 EPHFDFFRDKMNQQLGGHRIATVLMYLSHV-EKGGETVFPNSEV----------SQSRD---------GNWSECARRGYA 211 (318)
Q Consensus 152 ~~H~D~~~~~~~~~~~~~R~~T~liYLnD~-~eGGeT~Fp~~~~----------~~~~~---------~~~~~c~~~~~~ 211 (318)
.||+++.. +.+-.||.|+|+... -....+.|-.... .|... .....|-..-=+
T Consensus 364 ~WHvEG~l-------NE~IvATalYyyd~eNIT~s~L~FR~~~~d~~~~~~~~~~q~~~~~~~~~~g~~~~~~~~q~~Gs 436 (501)
T PF14033_consen 364 SWHVEGQL-------NEHIVATALYYYDSENITESRLSFRQQTDDPDLDQELSYEQDDHEWLERVFGIEDGGPAVQELGS 436 (501)
T ss_pred CccccCCc-------ccceeEEEEEEEecCccCCCceEeeeeccCccccccccccccchhHHHHhcCCCCCccceEEcCc
Confidence 68888764 346789999999632 2233555533220 00000 000111122246
Q ss_pred EeCCCCCEEEEeecCCCCCCCCCCCccccccc------ccceEEEEeeEee
Q 021056 212 VKPMKGDALLFFSLHPDASTDSTSLHGSCPVI------EGEKWSATKWIHV 256 (318)
Q Consensus 212 VkP~~G~allF~n~~~~g~~d~~~lH~g~PV~------~G~K~i~~~Wi~~ 256 (318)
|.-+.|++|+|+|+ ..|.+.|.. .|.+-+++.|+-.
T Consensus 437 v~~~~gr~i~fPN~---------~qhrv~~f~L~D~tkpGhrkil~lfLvD 478 (501)
T PF14033_consen 437 VETKEGRLIAFPNT---------LQHRVSPFELADPTKPGHRKILALFLVD 478 (501)
T ss_pred EEccCCcEEeccch---------hhhccCCccccCCCCCCcEEEEEEEecC
Confidence 88899999999995 667776554 4888888877633
No 64
>KOG4176 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.87 E-value=77 Score=30.53 Aligned_cols=182 Identities=21% Similarity=0.267 Sum_probs=97.3
Q ss_pred CceeEEeccCCC-EEEEcCCCCHHHHHHHHHHHhcccccceeEeCCCCc-------ccccceecccc-cc--cCCcchHH
Q 021056 50 PSRVTQLSWNPR-AFIYKGFLSDEECDHLIDLAKDKLETSMVADNESGK-------SIASEVRTSSG-MF--LSKAQDEI 118 (318)
Q Consensus 50 p~kve~ls~~P~-i~ii~nfLs~~EC~~Li~~a~~~l~~s~v~~~~~g~-------~~~~~~R~s~~-~~--l~~~~~~v 118 (318)
..++...-..|. +.++.+++++.|=+-++...... ..+. ...|+ ...-.++++.. -+ ++. -..+
T Consensus 117 ~~~l~~~~~~~~e~~~~~d~V~el~e~~l~~~~~~e---~~~~-~~~gk~R~~iq~G~~f~y~~~~~d~~~~~~p-iPs~ 191 (323)
T KOG4176|consen 117 GLKLRDEVFIPGELSLIVDFVTELEEKGLIGALVDE---TFTY-QESGKHREVIQLGYPFDYRTNNVDESKPVDP-IPSL 191 (323)
T ss_pred hheeeccccChhhceehhhhhhhhHHhhhhcccccc---ccee-eccccceeeeecCceeccCCCcccccCccCC-CchH
Confidence 334444344444 77888888888777666554321 1111 00111 01112222211 01 111 1356
Q ss_pred HHHHHHHHHHhhCCCCCCCccceEEecCCCCCcccccCCCCccccccCCCceEEEEEEEecCCCCCcceeecCCcccccC
Q 021056 119 VASIEARIAAWTFLPPENGEAMQILHYEHGQKYEPHFDFFRDKMNQQLGGHRIATVLMYLSHVEKGGETVFPNSEVSQSR 198 (318)
Q Consensus 119 ~~~i~~Ri~~~~glp~~~~E~~qv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnD~~eGGeT~Fp~~~~~~~~ 198 (318)
++-|.+|+-.+--+|. --+.+-|..|++|+.-.+|+|... ..+.+. .+.+|+|... .|-.... ...
T Consensus 192 ~~~ii~rlv~~~~ip~-~pd~~~iN~Ye~G~~i~ph~~~~~-------F~~Pi~-slS~lSe~~m----~Fg~~~~-~~~ 257 (323)
T KOG4176|consen 192 FKSIIDRLVSWRVIPE-RPDQCTINFYEPGDGIPPHIDHSA-------FLDPIS-SLSFLSECTM----EFGHGLL-SDN 257 (323)
T ss_pred HHHHHHHhhhhccCCC-CCCeeEEEeeCCCCCCCCCCChHH-------hcCceE-EEEeecceeE----Eeccccc-ccC
Confidence 7778888877766775 455688999999999999996532 233444 4446776421 1211100 000
Q ss_pred CCCcchhcCCCeEEeCCCCCEEEEeecCCCCCCCCCCCcccccccccceEEEEeeEeeccCCC
Q 021056 199 DGNWSECARRGYAVKPMKGDALLFFSLHPDASTDSTSLHGSCPVIEGEKWSATKWIHVRNFDK 261 (318)
Q Consensus 199 ~~~~~~c~~~~~~VkP~~G~allF~n~~~~g~~d~~~lH~g~PV~~G~K~i~~~Wi~~~~~~~ 261 (318)
.+... .-+++.-+.|.+++-.+-..| ...|.++|+. .|.+.-+....++...
T Consensus 258 ~~~~~----g~~s~p~~~g~~lvi~~~~ad-----~~~~~~~~~~--~kRisitfrki~~~~~ 309 (323)
T KOG4176|consen 258 IGNFR----GSLSLPLRYGSVLVIRGRSAD-----VAPHCIRPSR--NKRISITFRKIRPDPC 309 (323)
T ss_pred ccccc----cccccccccCeEEEeCCCccc-----ccccccCCCC--CceEEEEEEEeccCCC
Confidence 00000 126677777888877643222 5778888844 4777777887776544
No 65
>COG5285 Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=64.78 E-value=32 Score=32.59 Aligned_cols=97 Identities=21% Similarity=0.204 Sum_probs=57.6
Q ss_pred CcccccCCCCccccccCCCceEEEEEEEecCCC-CCcceee-cCCcccc--cCCCCcchh-cCCCeEEeCCCCCEEEEee
Q 021056 150 KYEPHFDFFRDKMNQQLGGHRIATVLMYLSHVE-KGGETVF-PNSEVSQ--SRDGNWSEC-ARRGYAVKPMKGDALLFFS 224 (318)
Q Consensus 150 ~y~~H~D~~~~~~~~~~~~~R~~T~liYLnD~~-eGGeT~F-p~~~~~~--~~~~~~~~c-~~~~~~VkP~~G~allF~n 224 (318)
.=.+|.|+.... .+..-+..+.+=|-|.. +-|.|.+ |...... +++-..+.- ....+-|.-.+||||||.
T Consensus 132 ~t~~HqD~~~~~----~~~~~lV~~wiAl~d~~~dnGat~vvPgSH~~~~~~~r~d~~~y~~~~~~pv~lekGDallF~- 206 (299)
T COG5285 132 ATRWHQDYPLVS----PGYPALVNAWIALCDFTEDNGATLVVPGSHKWDVIPERPDHETYLERNAVPVELEKGDALLFN- 206 (299)
T ss_pred cccccccccccc----CCccceEEEEEeccccccccCceEEEecccccccCCCCCCccchhhhcceeeeecCCCEEEEc-
Confidence 356899965432 23344666777788864 5677766 5543210 111111111 134678888999999994
Q ss_pred cCCCCCCCCCCCcccccccccceEEEEeeEeeccC
Q 021056 225 LHPDASTDSTSLHGSCPVIEGEKWSATKWIHVRNF 259 (318)
Q Consensus 225 ~~~~g~~d~~~lH~g~PV~~G~K~i~~~Wi~~~~~ 259 (318)
+.++|+.---..+-+-.+...-....+
T Consensus 207 --------~~L~HaA~aNrT~~~R~A~~~~~~~~~ 233 (299)
T COG5285 207 --------GSLWHAAGANRTSADRVALTLQFTVSF 233 (299)
T ss_pred --------chhhhhhhcCCCCcccceEEEEEeecc
Confidence 589999988888755455444433444
No 66
>PF02668 TauD: Taurine catabolism dioxygenase TauD, TfdA family; InterPro: IPR003819 This family consists of TauD/TfdA taurine catabolism dioxygenases. The Escherichia coli tauD gene is required for the utilization of taurine (2-aminoethanesulphonic acid) as a sulphur source and is expressed only under conditions of sulphate starvation. TauD is an alpha-ketoglutarate-dependent dioxygenase catalyzing the oxygenolytic release of sulphite from taurine []. The 2,4-dichlorophenoxyacetic acid/alpha-ketoglutarate dioxygenase from Burkholderia sp. (strain RASC) also belongs to this family []. TfdA from Ralstonia eutropha (Alcaligenes eutrophus) is a 2,4-D monooxygenase [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3SWT_B 3R1J_A 1GVG_A 1DRT_A 1DS1_A 1DS0_A 1DRY_A 3V15_A 3PVJ_D 3V17_A ....
Probab=64.59 E-value=6.2 Score=35.39 Aligned_cols=38 Identities=24% Similarity=0.444 Sum_probs=29.2
Q ss_pred CCeEEeCCCCCEEEEeecCCCCCCCCCCCcccccc--cccceEEEEee
Q 021056 208 RGYAVKPMKGDALLFFSLHPDASTDSTSLHGSCPV--IEGEKWSATKW 253 (318)
Q Consensus 208 ~~~~VkP~~G~allF~n~~~~g~~d~~~lH~g~PV--~~G~K~i~~~W 253 (318)
..+.++-++|++|||.| .+.+|+..+. ..|.|+..+.|
T Consensus 219 ~~~~~~~~~GDlli~dN--------~~~lHgR~~~~~~~~~R~L~R~~ 258 (258)
T PF02668_consen 219 YTYRHRWQPGDLLIWDN--------HRVLHGRTAFDDPDGDRHLLRVW 258 (258)
T ss_dssp GEEEEE--TTEEEEEET--------TTEEEEE--E-STTSSEEEEEEE
T ss_pred hcccccCCCceEEEEcC--------CeeEecCCCCCCCCCCEEEEEeC
Confidence 45788899999999987 4899999998 56889999888
No 67
>PHA02985 hypothetical protein; Provisional
Probab=63.47 E-value=65 Score=30.05 Aligned_cols=104 Identities=15% Similarity=0.151 Sum_probs=74.1
Q ss_pred hHHHHHHHHHHHHhhCCCCCCCccceEEecCCCCCcccccCCCCccccccCCCceEEEEEEEecCCCCCcceeecCCccc
Q 021056 116 DEIVASIEARIAAWTFLPPENGEAMQILHYEHGQKYEPHFDFFRDKMNQQLGGHRIATVLMYLSHVEKGGETVFPNSEVS 195 (318)
Q Consensus 116 ~~v~~~i~~Ri~~~~glp~~~~E~~qv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnD~~eGGeT~Fp~~~~~ 195 (318)
..++..|++++.+ +.-..+.+++..|+.|+.|. |. ...|+..+|+-+.....||..+-.+...
T Consensus 39 ~~I~~EI~~~i~E----~V~~~n~i~i~~f~~~~~~~-~~-----------~~~~~SkilICiqsAkkGG~iIi~~~~~- 101 (271)
T PHA02985 39 KIILDEIEQYIDE----TVLVKNLISIEVFNKKKKYY-QN-----------IPSRLSKIIICIQSAKKGGCIIIINNIT- 101 (271)
T ss_pred hHHHHHHHHhcCC----eEEecceeEEEEEcCCcceE-ee-----------CCCCceeEEEEEeecccCCEEEEecccc-
Confidence 4566777776643 22245678999999886643 11 1346788999999999999888744211
Q ss_pred ccCCCCcchhcCCCeEEeCCCCCEEEEeecCCCCCCCCCCCcccccccccceEEEEeeEee
Q 021056 196 QSRDGNWSECARRGYAVKPMKGDALLFFSLHPDASTDSTSLHGSCPVIEGEKWSATKWIHV 256 (318)
Q Consensus 196 ~~~~~~~~~c~~~~~~VkP~~G~allF~n~~~~g~~d~~~lH~g~PV~~G~K~i~~~Wi~~ 256 (318)
...-.++|..|.||+-- |.+-..+.+|.+|.-.++..=+..
T Consensus 102 -----------~~K~ii~~~~n~aVlLS---------PLs~Y~Vs~V~kGsli~i~l~idI 142 (271)
T PHA02985 102 -----------NNKKIITLNINHIIILS---------PLSKYTVSKVSKGSLIIIVLDIDI 142 (271)
T ss_pred -----------cCceEEecCCCeEEEec---------chhhceEEEecCCcEEEEEEEecC
Confidence 12578999999999985 468888999999988777665543
No 68
>cd00250 CAS_like Clavaminic acid synthetase (CAS) -like; CAS is a trifunctional Fe(II)/ 2-oxoglutarate (2OG) oxygenase carrying out three reactions in the biosynthesis of clavulanic acid, an inhibitor of class A serine beta-lactamases. In general, Fe(II)-2OG oxygenases catalyze a hydroxylation reaction, which leads to the incorporation of an oxygen atom from dioxygen into a hydroxyl group and conversion of 2OG to succinate and CO2
Probab=58.58 E-value=14 Score=33.71 Aligned_cols=40 Identities=28% Similarity=0.517 Sum_probs=33.4
Q ss_pred CCeEEeCCCCCEEEEeecCCCCCCCCCCCcccccccc---cceEEEEeeEe
Q 021056 208 RGYAVKPMKGDALLFFSLHPDASTDSTSLHGSCPVIE---GEKWSATKWIH 255 (318)
Q Consensus 208 ~~~~VkP~~G~allF~n~~~~g~~d~~~lH~g~PV~~---G~K~i~~~Wi~ 255 (318)
..+.++-++|++|+|.| .+++|+-.+... +.+|..+.|+.
T Consensus 218 ~~~~~~l~~Gdivi~DN--------~r~lHgR~~f~~~~~~~R~L~r~~i~ 260 (262)
T cd00250 218 NQLTVKLEPGDLLIFDN--------RRVLHGRTAFSPRYGGDRWLKGCYVD 260 (262)
T ss_pred hEEEEEcCCCCEEEEec--------hhhhcCCCCCCCCCCCceEEEEEEec
Confidence 45889999999999987 479999988764 57899998884
No 69
>KOG4459 consensus Membrane-associated proteoglycan Leprecan [Function unknown]
Probab=39.73 E-value=5.6 Score=39.73 Aligned_cols=74 Identities=23% Similarity=0.298 Sum_probs=55.9
Q ss_pred CceEEEEEEEecCCCCCcceeecCCcccccCCCCcchhcCCCeEEeCCCCCEEEEeecCCCCCCCCCCCcccccccccce
Q 021056 168 GHRIATVLMYLSHVEKGGETVFPNSEVSQSRDGNWSECARRGYAVKPMKGDALLFFSLHPDASTDSTSLHGSCPVIEGEK 247 (318)
Q Consensus 168 ~~R~~T~liYLnD~~eGGeT~Fp~~~~~~~~~~~~~~c~~~~~~VkP~~G~allF~n~~~~g~~d~~~lH~g~PV~~G~K 247 (318)
+-+....+.|+||+++||+..|...+. . .....+||+-|+.+-|-+-. .-.|...+|++|..
T Consensus 364 ~~~~~~a~~~~~dd~~~~el~~t~~d~-~----------t~~a~~k~~~~re~~~~~g~-------e~~~~~~~~~kg~e 425 (471)
T KOG4459|consen 364 TELDYFALLYLNDDFEGGELLFTEPDA-K----------TYTAISKPECGRECAFSSGA-------ENPHGVKAVTKGLE 425 (471)
T ss_pred HHHHhhccHhhcCccccccceecCCcc-c----------chhhccccccccchhhhccc-------cCccchhhhhhhhH
Confidence 456778889999999999999965421 0 12467899999999886522 46799999999987
Q ss_pred EEEEeeEeeccC
Q 021056 248 WSATKWIHVRNF 259 (318)
Q Consensus 248 ~i~~~Wi~~~~~ 259 (318)
=.+.-|....+-
T Consensus 426 ~~~~lw~~~~~~ 437 (471)
T KOG4459|consen 426 CAVALWPTLAPL 437 (471)
T ss_pred HhhhcCcccChh
Confidence 777778877664
No 70
>COG2850 Uncharacterized conserved protein [Function unknown]
Probab=33.18 E-value=63 Score=31.63 Aligned_cols=40 Identities=28% Similarity=0.483 Sum_probs=27.6
Q ss_pred hHHHHHHHHHHHHhhCCCCCCCccceEEecC-CCCCcccccCCCC
Q 021056 116 DEIVASIEARIAAWTFLPPENGEAMQILHYE-HGQKYEPHFDFFR 159 (318)
Q Consensus 116 ~~v~~~i~~Ri~~~~glp~~~~E~~qv~rY~-~G~~y~~H~D~~~ 159 (318)
++-++.+++ .+-++|.-...++.|. |. .||.|++|+|...
T Consensus 100 ~p~v~~l~~---~FrflP~wr~ddiMIS-~a~~GGgvg~H~D~YD 140 (383)
T COG2850 100 HPEVAALME---PFRFLPDWRIDDIMIS-FAAPGGGVGPHFDQYD 140 (383)
T ss_pred CHHHHHHHH---HhccCccccccceEEE-EecCCCccCccccchh
Confidence 344445444 4557777666677776 76 6999999999764
No 71
>PF11403 Yeast_MT: Yeast metallothionein; InterPro: IPR022710 Metallothioneins are characterised by an abundance of cysteine residues and a lack of generic secondary structure motifs. This protein functions in primary metal storage, transport and detoxification []. For the first 40 residues in the protein the polypeptide wraps around the metal by forming two large parallel loops separated by a deep cleft containing the metal cluster []. ; PDB: 1AQS_A 1AQR_A 1RJU_V 1FMY_A 1AOO_A 1AQQ_A.
Probab=31.61 E-value=21 Score=22.59 Aligned_cols=8 Identities=50% Similarity=1.144 Sum_probs=5.3
Q ss_pred chhhhhcC
Q 021056 302 GYCRKSCK 309 (318)
Q Consensus 302 ~~C~~sC~ 309 (318)
..|+|||.
T Consensus 18 eqcqkscs 25 (40)
T PF11403_consen 18 EQCQKSCS 25 (40)
T ss_dssp TTSTTS-S
T ss_pred HHHhhcCC
Confidence 67888885
No 72
>PRK09965 3-phenylpropionate dioxygenase ferredoxin subunit; Provisional
Probab=29.62 E-value=87 Score=24.48 Aligned_cols=49 Identities=16% Similarity=0.167 Sum_probs=32.7
Q ss_pred EEEEEecCCCCCcceeecCCcccccCCCCcchhcCCCeEEeCCCCCEEEEeecCCCCCCCCCCCccccccccc
Q 021056 173 TVLMYLSHVEKGGETVFPNSEVSQSRDGNWSECARRGYAVKPMKGDALLFFSLHPDASTDSTSLHGSCPVIEG 245 (318)
Q Consensus 173 T~liYLnD~~eGGeT~Fp~~~~~~~~~~~~~~c~~~~~~VkP~~G~allF~n~~~~g~~d~~~lH~g~PV~~G 245 (318)
+.+.-++|..+|+...|... ..+.|.-..|....|.| .+.|.++|+..|
T Consensus 4 ~~v~~~~~l~~g~~~~~~~~---------------~~i~v~~~~g~~~A~~~---------~CpH~g~~L~~G 52 (106)
T PRK09965 4 IYACPVADLPEGEALRVDTS---------------PVIALFNVGGEFYAIDD---------RCSHGNASLSEG 52 (106)
T ss_pred EEeeeHHHcCCCCeEEEeCC---------------CeEEEEEECCEEEEEeC---------cCCCCCCCCCce
Confidence 34556778778877666532 13455445777777755 799999999654
No 73
>cd03528 Rieske_RO_ferredoxin Rieske non-heme iron oxygenase (RO) family, Rieske ferredoxin component; composed of the Rieske ferredoxin component of some three-component RO systems including biphenyl dioxygenase (BPDO) and carbazole 1,9a-dioxygenase (CARDO). The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms. These enzymes enable microorganisms to tolerate and even exclusively utilize aromatic compounds for growth. ROs consist of two or three components: reductase, oxygenase, and ferredoxin (in some cases) components. The ferredoxin component contains either a plant-type or Rieske-type [2Fe-2S] cluster. The Rieske ferredoxin component in this family carries an electron from the RO reductase component to the terminal RO oxygenase component. BPDO degrades biphenyls and polychlorinated biphenyls. BPDO ferredoxin (BphF) has structural features consistent with a minimal and perhaps archetypical Rieske protein in that the in
Probab=29.30 E-value=76 Score=24.05 Aligned_cols=48 Identities=19% Similarity=0.229 Sum_probs=30.3
Q ss_pred EEEecCCCCCcceeecCCcccccCCCCcchhcCCCeEEeCCCCCEEEEeecCCCCCCCCCCCccccccccc
Q 021056 175 LMYLSHVEKGGETVFPNSEVSQSRDGNWSECARRGYAVKPMKGDALLFFSLHPDASTDSTSLHGSCPVIEG 245 (318)
Q Consensus 175 liYLnD~~eGGeT~Fp~~~~~~~~~~~~~~c~~~~~~VkP~~G~allF~n~~~~g~~d~~~lH~g~PV~~G 245 (318)
+.-++|...|+-..|.... ..+.|--..|....|.| ...|.++|+..|
T Consensus 4 v~~~~~l~~g~~~~~~~~g--------------~~~~v~r~~~~~~a~~~---------~CpH~g~~L~~g 51 (98)
T cd03528 4 VCAVDELPEGEPKRVDVGG--------------RPIAVYRVDGEFYATDD---------LCTHGDASLSEG 51 (98)
T ss_pred EEEhhhcCCCCEEEEEECC--------------eEEEEEEECCEEEEECC---------cCCCCCCCCCCC
Confidence 3445666666655554321 13445445677777755 799999999776
No 74
>PRK09553 tauD taurine dioxygenase; Reviewed
Probab=27.06 E-value=42 Score=31.18 Aligned_cols=31 Identities=19% Similarity=0.207 Sum_probs=0.0
Q ss_pred cccCCCCccccccCCCceEEEEEEEecCCCCCcceee
Q 021056 153 PHFDFFRDKMNQQLGGHRIATVLMYLSHVEKGGETVF 189 (318)
Q Consensus 153 ~H~D~~~~~~~~~~~~~R~~T~liYLnD~~eGGeT~F 189 (318)
||.|..... ..-.+++|.-+.-+.+||+|.|
T Consensus 96 wHtD~sy~~------~pp~~~~L~~~~~p~~GG~T~f 126 (277)
T PRK09553 96 WHTDVTFIE------TPPLGAILAAKQLPSTGGDTLW 126 (277)
T ss_pred CeecccCee------CCCceeEEEEEecCCCCCccHh
No 75
>PF08562 Crisp: Crisp; InterPro: IPR013871 This entry is found on Crisp proteins which contain IPR001283 from INTERPRO and has been termed the Crisp domain. It is found in the mammalian reproductive tract and the venom of reptiles, and has been shown to regulate ryanodine receptor Ca2+ signalling []. It contains 10 conserved cysteines which are all involved in disulphide bonds and is structurally related to the ion channel inhibitor toxins BgK and ShK []. ; PDB: 3MZ8_B 1XX5_B 2GIZ_A 1XTA_A 1RC9_A 2A05_A 2CQ7_A 2DDA_C 2EPF_A 2DDB_C ....
Probab=27.04 E-value=27 Score=24.68 Aligned_cols=31 Identities=26% Similarity=0.536 Sum_probs=24.3
Q ss_pred cccCCcChHhHhhcCcCccCccccccccCCcchhhhhcC
Q 021056 271 CVDEDLNCVVWAKAGECKKNPLYMVGSKSSRGYCRKSCK 309 (318)
Q Consensus 271 C~d~~~~C~~wa~~geC~~np~~m~~~~~~~~~C~~sC~ 309 (318)
=.|...+|+...++--|.. .+|. .+|+.||.
T Consensus 19 y~D~~sNC~~l~~~~~C~~--~~~k------~~C~AtC~ 49 (55)
T PF08562_consen 19 YEDKYSNCKSLKKQWGCQH--PYVK------SNCKATCF 49 (55)
T ss_dssp S--SSTTHHHHHHHSTTTS--HHHH------HHSHHHHH
T ss_pred ccccccccHHHHHhcCCCC--hHHh------cCCCCeeC
Confidence 3578899999999999986 4575 89999984
No 76
>cd03530 Rieske_NirD_small_Bacillus Small subunit of nitrite reductase (NirD) family, Rieske domain; composed of proteins similar to the Bacillus subtilis small subunit of assimilatory nitrite reductase containing a Rieske domain. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. Assimilatory nitrate and nitrite reductases convert nitrate through nitrite to ammonium.
Probab=25.20 E-value=1.1e+02 Score=23.19 Aligned_cols=48 Identities=13% Similarity=0.135 Sum_probs=29.5
Q ss_pred EEecCCCCCcceeecCCcccccCCCCcchhcCCCeEEeCCCCCEEEEeecCCCCCCCCCCCccccccccc
Q 021056 176 MYLSHVEKGGETVFPNSEVSQSRDGNWSECARRGYAVKPMKGDALLFFSLHPDASTDSTSLHGSCPVIEG 245 (318)
Q Consensus 176 iYLnD~~eGGeT~Fp~~~~~~~~~~~~~~c~~~~~~VkP~~G~allF~n~~~~g~~d~~~lH~g~PV~~G 245 (318)
.-++|..+|+...|..... .-+.++...|....|.| ...|.++|+..|
T Consensus 5 ~~~~~l~~~~~~~~~~~g~-------------~i~l~r~~~g~~~A~~~---------~CpH~g~~L~~g 52 (98)
T cd03530 5 GALEDIPPRGARKVQTGGG-------------EIAVFRTADDEVFALEN---------RCPHKGGPLSEG 52 (98)
T ss_pred EEHHHCCCCCcEEEEECCE-------------EEEEEEeCCCCEEEEcC---------cCCCCCCCccCC
Confidence 3455666666665543210 12334445577777755 799999999876
No 77
>cd03474 Rieske_T4moC Toluene-4-monooxygenase effector protein complex (T4mo), Rieske ferredoxin subunit; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. T4mo is a four-protein complex that catalyzes the NADH- and O2-dependent hydroxylation of toluene to form p-cresol. T4mo consists of an NADH oxidoreductase (T4moF), a diiron hydroxylase (T4moH), a catalytic effector protein (T4moD), and a Rieske ferredoxin (T4moC). T4moC contains a Rieske domain and functions as an obligate electron carrier between T4moF and T4moH. Rieske ferredoxins are found as subunits of membrane oxidase complexes, cis-dihydrodiol-forming aromatic dioxygenases, bacterial assimilatory nitrite reductases, and arsenite oxidase. Rieske ferredoxins are also found as soluble electron carriers in bacterial dioxygenase and monooxygenase complexes.
Probab=24.86 E-value=1.3e+02 Score=23.44 Aligned_cols=49 Identities=22% Similarity=0.249 Sum_probs=31.3
Q ss_pred EEecCCCCCcceeecCCcccccCCCCcchhcCCCeEEeCCCCCEEEEeecCCCCCCCCCCCcccccccccc
Q 021056 176 MYLSHVEKGGETVFPNSEVSQSRDGNWSECARRGYAVKPMKGDALLFFSLHPDASTDSTSLHGSCPVIEGE 246 (318)
Q Consensus 176 iYLnD~~eGGeT~Fp~~~~~~~~~~~~~~c~~~~~~VkP~~G~allF~n~~~~g~~d~~~lH~g~PV~~G~ 246 (318)
.-++|..+|+...|.... ...+.++...|....|.| .+.|.++|+..|.
T Consensus 5 ~~~~~l~~g~~~~~~~~~-------------~~~~~~~~~~g~~~A~~n---------~CpH~g~~L~~g~ 53 (108)
T cd03474 5 CSLDDVWEGEMELVDVDG-------------EEVLLVAPEGGEFRAFQG---------ICPHQEIPLAEGG 53 (108)
T ss_pred eehhccCCCceEEEEECC-------------eEEEEEEccCCeEEEEcC---------cCCCCCCCcccCc
Confidence 335566666655554321 013456677787777765 7999999998763
No 78
>TIGR02410 carnitine_TMLD trimethyllysine dioxygenase. Members of this family with known function act as trimethyllysine dioxygenase, an enzyme in the pathway for carnitine biosynthesis from lysine. This enzyme is homologous to gamma-butyrobetaine,2-oxoglutarate dioxygenase, which catalyzes the last step in carnitine biosynthesis. Members of this family appear to be eukaryotic only.
Probab=23.71 E-value=96 Score=30.06 Aligned_cols=38 Identities=18% Similarity=0.235 Sum_probs=30.8
Q ss_pred CCeEEeCCCCCEEEEeecCCCCCCCCCCCcccccccccceEEEEeeE
Q 021056 208 RGYAVKPMKGDALLFFSLHPDASTDSTSLHGSCPVIEGEKWSATKWI 254 (318)
Q Consensus 208 ~~~~VkP~~G~allF~n~~~~g~~d~~~lH~g~PV~~G~K~i~~~Wi 254 (318)
..+.++-++|++|+|.| .+.+|+-..-. |.||..-.++
T Consensus 311 ~~~~~~l~pGd~vi~DN--------~rvLHgRtaf~-g~R~L~G~Y~ 348 (362)
T TIGR02410 311 NEIEFKLRPGTVLIFDN--------WRVLHSRTSFT-GYRRMCGCYL 348 (362)
T ss_pred cEEEEEcCCccEEEEee--------EEEeecCCCcC-CceEEEEEEE
Confidence 45788999999999988 48999998875 7777666665
No 79
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....
Probab=21.24 E-value=67 Score=18.82 Aligned_cols=16 Identities=19% Similarity=0.526 Sum_probs=10.3
Q ss_pred CcChHhHhhcCcCccC
Q 021056 275 DLNCVVWAKAGECKKN 290 (318)
Q Consensus 275 ~~~C~~wa~~geC~~n 290 (318)
...|..|.+.|.|...
T Consensus 3 ~~~C~~f~~~g~C~~G 18 (27)
T PF00642_consen 3 TKLCRFFMRTGTCPFG 18 (27)
T ss_dssp SSB-HHHHHTS--TTG
T ss_pred cccChhhccCCccCCC
Confidence 4579999999999854
No 80
>TIGR02409 carnitine_bodg gamma-butyrobetaine hydroxylase. Members of this protein family are gamma-butyrobetaine hydroxylase, both bacterial and eukarytotic. This enzyme catalyzes the last step in the conversion of lysine to carnitine. Carnitine can serve as a compatible solvent in bacteria and also participates in fatty acid metabolism.
Probab=20.94 E-value=1.2e+02 Score=29.31 Aligned_cols=40 Identities=23% Similarity=0.292 Sum_probs=31.0
Q ss_pred CCeEEeCCCCCEEEEeecCCCCCCCCCCCccccccc--ccceEEEEeeEe
Q 021056 208 RGYAVKPMKGDALLFFSLHPDASTDSTSLHGSCPVI--EGEKWSATKWIH 255 (318)
Q Consensus 208 ~~~~VkP~~G~allF~n~~~~g~~d~~~lH~g~PV~--~G~K~i~~~Wi~ 255 (318)
..+.++=++|++|+|.| .+.+|+..+-. .|.++..-.++.
T Consensus 312 ~~~~~~l~pGd~vi~DN--------~rvlH~R~af~~~~~~R~L~g~Y~d 353 (366)
T TIGR02409 312 FKFTFKLEPGDLVLFDN--------TRLLHARDAFSNPEGKRHLQGCYAD 353 (366)
T ss_pred cEEEEEcCCCcEEEEec--------eEEeecCCCcCCCCCceEEEEEEEc
Confidence 34788999999999987 47999998875 577776665553
No 81
>cd04338 Rieske_RO_Alpha_Tic55 Tic55 is a 55kDa LLS1-related non-heme iron oxygenase associated with protein transport through the plant inner chloroplast membrane. This domain represents the N-terminal Rieske domain of the Tic55 oxygenase alpha subunit. Tic55 is closely related to the oxygenase alpha subunits of a small subfamily of enzymes found in plants as well as oxygenic cyanobacterial photosynthesizers including LLS1 (lethal leaf spot 1, also known as PaO), Ptc52, and ACD1 (accelerated cell death 1). ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis.
Probab=20.03 E-value=1.6e+02 Score=24.10 Aligned_cols=70 Identities=13% Similarity=0.020 Sum_probs=45.2
Q ss_pred ceEEEEEEEecCCCCCcceeecCCcccccCCCCcchhcCCCeEEeCCCCCEEEEeecCCCCCCCCCCCcccccccccce-
Q 021056 169 HRIATVLMYLSHVEKGGETVFPNSEVSQSRDGNWSECARRGYAVKPMKGDALLFFSLHPDASTDSTSLHGSCPVIEGEK- 247 (318)
Q Consensus 169 ~R~~T~liYLnD~~eGGeT~Fp~~~~~~~~~~~~~~c~~~~~~VkP~~G~allF~n~~~~g~~d~~~lH~g~PV~~G~K- 247 (318)
.+.+..+..+.|..+|+-..|-... ..-+.++-..|.+-.|.| .+.|.+.|+..|.-
T Consensus 15 ~~~W~~v~~~~el~~~~~~~~~v~g-------------~~ivl~r~~~G~v~A~~n---------~CpHrga~L~~G~~~ 72 (134)
T cd04338 15 REEWYPLYLLKDVPTDAPLGLSVYD-------------EPFVLFRDQNGQLRCLED---------RCPHRLAKLSEGQLI 72 (134)
T ss_pred ccCcEEEEEHHHCCCCCCEEEEECC-------------ceEEEEEcCCCCEEEEcC---------cCCCCcCcccCCeec
Confidence 4567788889999888866554321 012334456788888866 79999999988731
Q ss_pred -EEEEeeEeeccCC
Q 021056 248 -WSATKWIHVRNFD 260 (318)
Q Consensus 248 -~i~~~Wi~~~~~~ 260 (318)
=.++-.+|.-.|.
T Consensus 73 ~~~i~CP~Hgw~Fd 86 (134)
T cd04338 73 DGKLECLYHGWQFG 86 (134)
T ss_pred CCEEEccCCCCEEC
Confidence 1455555555444
No 82
>PF00355 Rieske: Rieske [2Fe-2S] domain; InterPro: IPR017941 There are multiple types of iron-sulphur clusters which are grouped into three main categories based on their atomic content: [2Fe-2S], [3Fe-4S], [4Fe-4S] (see PDOC00176 from PROSITEDOC), and other hybrid or mixed metal types. Two general types of [2Fe-2S] clusters are known and they differ in their coordinating residues. The ferredoxin-type [2Fe-2S] clusters are coordinated to the protein by four cysteine residues (see PDOC00175 from PROSITEDOC). The Rieske-type [2Fe-2S] cluster is coordinated to its protein by two cysteine residues and two histidine residues [, ]. The structure of several Rieske domains has been solved []. It contains three layers of antiparallel beta sheets forming two beta sandwiches. Both beta sandwiches share the central sheet 2. The metal-binding site is at the top of the beta sandwich formed by the sheets 2 and 3. The Fe1 iron of the Rieske cluster is coordinated by two cysteines while the other iron Fe2 is coordinated by two histidines. Two inorganic sulphide ions bridge the two iron ions forming a flat, rhombic cluster. Rieske-type iron-sulphur clusters are common to electron transfer chains of mitochondria and chloroplast and to non-haem iron oxygenase systems: The Rieske protein of the Ubiquinol-cytochrome c reductase (1.10.2.2 from EC) (also known as the bc1 complex or complex III), a complex of the electron transport chains of mitochondria and of some aerobic prokaryotes; it catalyses the oxidoreduction of ubiquinol and cytochrome c. The Rieske protein of chloroplastic plastoquinone-plastocyanin reductase (1.10.99.1 from EC) (also known as the b6f complex). It is functionally similar to the bc1 complex and catalyses the oxidoreduction of plastoquinol and cytochrome f. Bacterial naphthalene 1,2-dioxygenase subunit alpha, a component of the naphthalene dioxygenase (NDO) multicomponent enzyme system which catalyses the incorporation of both atoms of molecular oxygen into naphthalene to form cis-naphthalene dihydrodiol. Bacterial 3-phenylpropionate dioxygenase ferredoxin subunit. Bacterial toluene monoxygenase. Bacterial biphenyl dioxygenase. ; GO: 0016491 oxidoreductase activity, 0051537 2 iron, 2 sulfur cluster binding, 0055114 oxidation-reduction process; PDB: 2XRX_A 2XR8_O 2XSH_G 2XSO_I 2YFI_C 2YFL_A 2YFJ_K 1G8J_D 1G8K_D 1NYK_B ....
Probab=20.01 E-value=1.6e+02 Score=22.07 Aligned_cols=29 Identities=28% Similarity=0.481 Sum_probs=22.4
Q ss_pred CeEEeCCCCCEEEEeecCCCCCCCCCCCcccccccccc
Q 021056 209 GYAVKPMKGDALLFFSLHPDASTDSTSLHGSCPVIEGE 246 (318)
Q Consensus 209 ~~~VkP~~G~allF~n~~~~g~~d~~~lH~g~PV~~G~ 246 (318)
.+.+.-..|....|.| ...|.++|+..|.
T Consensus 26 ~v~~~~~~g~~~A~~~---------~CpH~g~~l~~~~ 54 (97)
T PF00355_consen 26 LVLVRRSDGEIYAFSN---------RCPHQGCPLSEGP 54 (97)
T ss_dssp EEEEEETTTEEEEEES---------B-TTTSBBGGCSS
T ss_pred EEEEEeCCCCEEEEEc---------cCCccceeEccee
Confidence 4666677788888866 7999999999884
Done!