Query 021057
Match_columns 318
No_of_seqs 185 out of 1474
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 07:16:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021057.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021057hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0819 Annexin [Intracellular 100.0 4.4E-97 1E-101 658.4 29.7 315 1-318 6-321 (321)
2 KOG0819 Annexin [Intracellular 100.0 9.8E-53 2.1E-57 374.5 18.1 226 6-241 83-319 (321)
3 PF00191 Annexin: Annexin; In 99.8 2.5E-18 5.5E-23 122.5 7.2 66 15-80 1-66 (66)
4 PF00191 Annexin: Annexin; In 99.7 2.9E-17 6.2E-22 117.0 7.9 66 248-313 1-66 (66)
5 smart00335 ANX Annexin repeats 99.5 1.3E-14 2.8E-19 98.7 5.8 53 28-80 1-53 (53)
6 smart00335 ANX Annexin repeats 99.5 1.4E-13 2.9E-18 93.6 5.9 53 261-313 1-53 (53)
7 PF13766 ECH_C: 2-enoyl-CoA Hy 71.3 13 0.00028 29.3 5.7 49 191-239 35-91 (118)
8 PF13758 Prefoldin_3: Prefoldi 59.4 63 0.0014 24.6 7.1 44 7-50 25-73 (99)
9 COG5173 SEC6 Exocyst complex s 51.8 65 0.0014 32.3 7.6 177 33-238 295-495 (742)
10 PF00249 Myb_DNA-binding: Myb- 42.7 78 0.0017 20.1 4.8 33 15-47 7-41 (48)
11 PF14003 YlbE: YlbE-like prote 42.0 76 0.0016 22.2 4.7 38 191-229 13-50 (65)
12 KOG0859 Synaptobrevin/VAMP-lik 34.1 2E+02 0.0043 24.9 6.9 66 116-182 75-141 (217)
13 cd00171 Sec7 Sec7 domain; Doma 34.1 1.4E+02 0.0031 25.3 6.3 53 11-67 32-87 (185)
14 KOG1014 17 beta-hydroxysteroid 33.2 19 0.00041 33.3 0.8 48 268-315 75-124 (312)
15 PF13720 Acetyltransf_11: Udp 33.0 63 0.0014 23.6 3.5 26 116-141 28-55 (83)
16 KOG0859 Synaptobrevin/VAMP-lik 31.7 1.2E+02 0.0027 26.1 5.4 49 199-247 75-123 (217)
17 PF14003 YlbE: YlbE-like prote 29.5 60 0.0013 22.7 2.6 45 269-314 16-61 (65)
18 PF13720 Acetyltransf_11: Udp 29.4 47 0.001 24.3 2.2 21 40-60 27-47 (83)
19 PF09888 DUF2115: Uncharacteri 27.6 3.6E+02 0.0078 22.4 8.6 75 108-182 9-90 (163)
20 KOG2286 Exocyst complex subuni 27.4 6.5E+02 0.014 26.1 10.5 208 85-317 235-450 (667)
21 COG5118 BDP1 Transcription ini 27.3 63 0.0014 30.6 3.1 41 13-56 369-409 (507)
22 PF01992 vATP-synt_AC39: ATP s 26.9 4E+02 0.0087 24.3 8.7 48 247-296 172-220 (337)
23 PF11159 DUF2939: Protein of u 24.3 1.5E+02 0.0032 22.0 4.2 50 241-298 8-57 (95)
24 cd00167 SANT 'SWI3, ADA2, N-Co 20.9 2E+02 0.0042 17.0 4.9 34 15-48 5-39 (45)
No 1
>KOG0819 consensus Annexin [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.4e-97 Score=658.44 Aligned_cols=315 Identities=39% Similarity=0.593 Sum_probs=310.0
Q ss_pred CccccCCCCCCChHHHHHHHHHhhhcCCCCHHHHHHHHcCCCHHHHHHHHHHHHHhhchhHHHHHhhcccccHHHHHHHH
Q 021057 1 MSTLKVPDLVPPPEQDAKRLKEAFDGLGTDEKAVTWVLSQRTASQRQLIRQAYQRLYNESLIDNITSELSGDFKDAVIMW 80 (318)
Q Consensus 1 m~~~~~~~~~~~~~~da~~L~~A~~g~gtde~~li~il~~rs~~q~~~i~~~Y~~~y~~~L~~~l~~e~sG~~~~~l~~l 80 (318)
|++.++|.+.|+|..||+.|++||+||||||++||+||++|||+|||.|+++|+..||+||.++|++|+||+|++++++|
T Consensus 6 ~~~t~~~~~~f~p~~DAe~L~kA~kG~Gtde~aII~iL~~Rsn~QRq~I~~ayk~~ygkDLi~~Lk~ELsG~Fe~~i~al 85 (321)
T KOG0819|consen 6 MAGTVVPAPVFDPVQDAEQLRKAMKGFGTDEQAIIDILTHRSNAQRQLIRAAYKTMYGKDLIKDLKSELSGDFERAIVAL 85 (321)
T ss_pred CCcccCCCCCCChHHHHHHHHHHHhcCCCCHHHHHHHHHccCHHHHHHHHHHHHHHHhHHHHHHHHHHhCccHHHHHHHH
Confidence 56778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCcHHHHHHHHHHHHhcCCCCCCchHHHHHHhhcCCHHHHHHHHHHHHhhhcccHHHHHHhhcCccHHHHHHHHHhhhc
Q 021057 81 TLDPAERDAKMAKEALKKSKSGVKHLQVIVEISCASSPYHLAAVRQAYCALFDCSIEEDITAVVSMPLRKVLLRLVSSFR 160 (318)
Q Consensus 81 ~~~~~~~da~~l~~A~~g~~~~gtde~~lieIl~~rs~~~l~~i~~~Y~~~y~~sL~~~i~~~~sg~~~~~l~~ll~~~r 160 (318)
+.+|+++||++|++||+| +||||++||||+|||||.|+++|+++|+..|++||++||.+++||+|+++|+.|+++.|
T Consensus 86 ~~~p~~~DA~~l~~amkg---~gtde~vlIEIlcTRT~~el~~i~~aY~~~y~~sLEeDI~s~TSG~frklLv~L~~~~R 162 (321)
T KOG0819|consen 86 MKPPAEYDAKELKKAMKG---LGTDEKVLIEILCTRTNEELRAIRQAYQELYKKSLEEDIASDTSGDFRKLLVSLVQGNR 162 (321)
T ss_pred cCCHHHhHHHHHHHHHhc---cCcchhhheeeeccCCHHHHHHHHHHHHHHHcccHHHHhhhccCchHHHHHHHHHhcCC
Confidence 999999999999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccccCHHHHHHHHHHHHHHHhcCCCChh-hHHHHHhcCCHHHHHHHHHHHHHhhCCCHHHHhhhhccccHHHHHHHHH
Q 021057 161 YDKELLDIEAAASEANQLHEAIKAKQLDHD-QVVHILATRNFFQLKATFERYEQMHGSPIDEDISSVGKGDLVSLMKMVI 239 (318)
Q Consensus 161 ~~~~~vd~~~a~~da~~L~~A~~~~~~~~~-~li~Il~~rs~~~l~~I~~~Y~~~yg~~L~~~I~~e~sG~~~~~Ll~lv 239 (318)
+|...||..+|+.||+.|++|+++++++++ .|++||++||..||+.++++|++.+|++|+++|+++++|+|+.+|++++
T Consensus 163 ~e~~~vd~~la~~dA~~L~~Age~k~gtde~~~~~Il~tRs~~qL~~vf~~y~~~~g~diek~I~~e~~gd~~~~llaiv 242 (321)
T KOG0819|consen 163 DEGDRVDDALAKQDAQDLYEAGEKKWGTDEDKFIRILTTRSKAQLRLVFEEYQRISGKDIEKSIKEEFSGDFEKLLLAIV 242 (321)
T ss_pred ccCCCcCHHHHHHHHHHHHHHhhhhccCcHHHHHHHHHhCCHHHHHHHHHHHHHhcchhHHHHHhhccCchHHHHHHHHH
Confidence 998899999999999999999999998666 8999999999999999999999999999999999999999999999999
Q ss_pred HhhCCchhhHHHHHHhhccCCCCchhHHHHHHHhccHhhHHHHHHHHHhhhCCchHhhhhhcCcHHHHHHHHHhhcCCC
Q 021057 240 LCIRCPERHFAEVIRTSIVGFGTDEAALNRAIITRAEVDMKLIKEVYPIMYKNTLEDDVIGDTSGDYQDFLLTLTGSKF 318 (318)
Q Consensus 240 ~~~~~~~~~~A~~l~~a~~g~gtd~~~L~ril~~r~e~dl~~Ik~~y~~~yg~~L~~~i~~~~sg~y~~~Ll~l~~~~~ 318 (318)
.|++|||.|||+.||.||+|.|||+.+||||+|||+|+||..|+++|+++||+||.++|+++|||||+++||+|||++.
T Consensus 243 ~c~~n~~~yFA~~L~~amkg~GTdd~~LiRI~VsRsEiDl~~Ik~ef~~~Y~ksL~~~I~~dtsGdY~~~LlaL~g~~~ 321 (321)
T KOG0819|consen 243 KCIRNPPAYFAERLRKAMKGLGTDDKTLIRIVVSRSEIDLLDIKEEFQRKYGKSLYSAIKGDTSGDYKKALLALLGGDD 321 (321)
T ss_pred HHHcCHHHHHHHHHHHHHhccCCCccceeeeeeeHHHhhHHHHHHHHHHHhCccHHHHHhhhccchHHHHHHHHhCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999874
No 2
>KOG0819 consensus Annexin [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.8e-53 Score=374.50 Aligned_cols=226 Identities=31% Similarity=0.392 Sum_probs=216.4
Q ss_pred CCCCCCChHHHHHHHHHhhhcCCCCHHHHHHHHcCCCHHHHHHHHHHHHHhhchhHHHHHhhcccccHHHHHHHHhC---
Q 021057 6 VPDLVPPPEQDAKRLKEAFDGLGTDEKAVTWVLSQRTASQRQLIRQAYQRLYNESLIDNITSELSGDFKDAVIMWTL--- 82 (318)
Q Consensus 6 ~~~~~~~~~~da~~L~~A~~g~gtde~~li~il~~rs~~q~~~i~~~Y~~~y~~~L~~~l~~e~sG~~~~~l~~l~~--- 82 (318)
|--+.||++.||..|++||||+||||++||||||+|||.|+++|+++|+..|+++|+++|.+++||+|+++|+.|+.
T Consensus 83 ~al~~~p~~~DA~~l~~amkg~gtde~vlIEIlcTRT~~el~~i~~aY~~~y~~sLEeDI~s~TSG~frklLv~L~~~~R 162 (321)
T KOG0819|consen 83 VALMKPPAEYDAKELKKAMKGLGTDEKVLIEILCTRTNEELRAIRQAYQELYKKSLEEDIASDTSGDFRKLLVSLVQGNR 162 (321)
T ss_pred HHHcCCHHHhHHHHHHHHHhccCcchhhheeeeccCCHHHHHHHHHHHHHHHcccHHHHhhhccCchHHHHHHHHHhcCC
Confidence 34456899999999999999999999999999999999999999999999999999999999999999999999984
Q ss_pred --------CcHHHHHHHHHHHHhcCCCCCCchHHHHHHhhcCCHHHHHHHHHHHHhhhcccHHHHHHhhcCccHHHHHHH
Q 021057 83 --------DPAERDAKMAKEALKKSKSGVKHLQVIVEISCASSPYHLAAVRQAYCALFDCSIEEDITAVVSMPLRKVLLR 154 (318)
Q Consensus 83 --------~~~~~da~~l~~A~~g~~~~gtde~~lieIl~~rs~~~l~~i~~~Y~~~y~~sL~~~i~~~~sg~~~~~l~~ 154 (318)
..+..||+.|++|...+ +|||+..++.|||+||.+||+++.+.|+..+|+++++.|+.+++|+|+.+|++
T Consensus 163 ~e~~~vd~~la~~dA~~L~~Age~k--~gtde~~~~~Il~tRs~~qL~~vf~~y~~~~g~diek~I~~e~~gd~~~~lla 240 (321)
T KOG0819|consen 163 DEGDRVDDALAKQDAQDLYEAGEKK--WGTDEDKFIRILTTRSKAQLRLVFEEYQRISGKDIEKSIKEEFSGDFEKLLLA 240 (321)
T ss_pred ccCCCcCHHHHHHHHHHHHHHhhhh--ccCcHHHHHHHHHhCCHHHHHHHHHHHHHhcchhHHHHHhhccCchHHHHHHH
Confidence 24889999999999987 99999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhccCccccCHHHHHHHHHHHHHHHhcCCCChhhHHHHHhcCCHHHHHHHHHHHHHhhCCCHHHHhhhhccccHHHH
Q 021057 155 LVSSFRYDKELLDIEAAASEANQLHEAIKAKQLDHDQVVHILATRNFFQLKATFERYEQMHGSPIDEDISSVGKGDLVSL 234 (318)
Q Consensus 155 ll~~~r~~~~~vd~~~a~~da~~L~~A~~~~~~~~~~li~Il~~rs~~~l~~I~~~Y~~~yg~~L~~~I~~e~sG~~~~~ 234 (318)
++.|.|+++ .++|+.||.||+|.|+++.++|||+++||+.+|..|+.+|+++||++|..+|+..+||||+++
T Consensus 241 iv~c~~n~~--------~yFA~~L~~amkg~GTdd~~LiRI~VsRsEiDl~~Ik~ef~~~Y~ksL~~~I~~dtsGdY~~~ 312 (321)
T KOG0819|consen 241 IVKCIRNPP--------AYFAERLRKAMKGLGTDDKTLIRIVVSRSEIDLLDIKEEFQRKYGKSLYSAIKGDTSGDYKKA 312 (321)
T ss_pred HHHHHcCHH--------HHHHHHHHHHHhccCCCccceeeeeeeHHHhhHHHHHHHHHHHhCccHHHHHhhhccchHHHH
Confidence 999999875 899999999999999888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHh
Q 021057 235 MKMVILC 241 (318)
Q Consensus 235 Ll~lv~~ 241 (318)
|++++..
T Consensus 313 LlaL~g~ 319 (321)
T KOG0819|consen 313 LLALLGG 319 (321)
T ss_pred HHHHhCC
Confidence 9999853
No 3
>PF00191 Annexin: Annexin; InterPro: IPR018502 The annexins (or lipocortins) are a family of proteins that bind to phospholipids in a calcium-dependent manner []. They are distributed ubiquitously in different tissues and cell types of higher and lower eukaryotes, including mammals, fish, birds, Drosophila melanogaster (Fruit fly), Xenopus laevis (African clawed frog), Caenorhabditis elegans , Dictyostelium discoideum (Slime mold) and Neurospora crassa [, ]. Annexins are absent from yeasts and prokaryotes []. The plant annexins are somewhat distinct from those found in other taxa []. Most eukaryotic species have 1-20 annexin (ANX) genes. All annexins share a core domain made up of four similar repeats, each approximately 70 amino acids long []. Each individual annexin repeat (sometimes referred to as endonexin folds) is folded into five alpha-helices, and in turn are wound into a right-handed super-helix; they usually contain a characteristic 'type 2' motif for binding calcium ions with the sequence 'GxGT-[38 residues]-D/E'. Animal and fungal annexins also have variable amino-terminal domains. The core domains of most vertebrate annexins have been analysed by X-ray crystallography, revealing conservation of their secondary and tertiary structures despite only 45-55% amino-acid identity among individual members. The four repeats pack into a structure that resembles a flattened disc, with a slightly convex surface on which the Ca 2+ -binding loops are located and a concave surface at which the amino and carboxyl termini come into close apposition. Annexins are traditionally thought of as calcium-dependent phospholipid-binding proteins, but recent work suggests a more complex set of functions. The famiy has been linked with inhibition of phospholipase activity, exocytosis and endoctyosis, signal transduction, organisation of the extracellular matrix, resistance to reactive oxygen species and DNA replication [].; GO: 0005509 calcium ion binding, 0005544 calcium-dependent phospholipid binding; PDB: 1N44_A 1BC1_A 2IE6_A 2H0M_A 1A8B_A 2H0K_A 1BCW_A 1BCZ_A 1N42_A 1BC0_A ....
Probab=99.75 E-value=2.5e-18 Score=122.51 Aligned_cols=66 Identities=36% Similarity=0.601 Sum_probs=63.4
Q ss_pred HHHHHHHHhhhcCCCCHHHHHHHHcCCCHHHHHHHHHHHHHhhchhHHHHHhhcccccHHHHHHHH
Q 021057 15 QDAKRLKEAFDGLGTDEKAVTWVLSQRTASQRQLIRQAYQRLYNESLIDNITSELSGDFKDAVIMW 80 (318)
Q Consensus 15 ~da~~L~~A~~g~gtde~~li~il~~rs~~q~~~i~~~Y~~~y~~~L~~~l~~e~sG~~~~~l~~l 80 (318)
.||+.|++|++|+|+|+..+++|+++||+.|++.|+++|+..||++|+++|++++||+|+++|++|
T Consensus 1 ~DA~~l~~a~~~~g~de~~li~Il~~rs~~ql~~i~~~Y~~~~g~~L~~~i~~e~sGd~~~~Ll~l 66 (66)
T PF00191_consen 1 YDAELLHAALKGWGTDEDVLIEILCTRSPAQLRAIKQAYKKKYGKDLEEDIKKETSGDFEKLLLAL 66 (66)
T ss_dssp HHHHHHHHHHSSSSSTHHHHHHHHHHSTHHHHHHHHHHHHHHHSS-HHHHHHHHSTHHHHHHHHHH
T ss_pred CHHHHHHHHccCCCCChhHhhhHHhhhcccccceeehhhhhhhHHHHHHHHHHhCCHHHHHHHHhC
Confidence 589999999999999999999999999999999999999999999999999999999999999875
No 4
>PF00191 Annexin: Annexin; InterPro: IPR018502 The annexins (or lipocortins) are a family of proteins that bind to phospholipids in a calcium-dependent manner []. They are distributed ubiquitously in different tissues and cell types of higher and lower eukaryotes, including mammals, fish, birds, Drosophila melanogaster (Fruit fly), Xenopus laevis (African clawed frog), Caenorhabditis elegans , Dictyostelium discoideum (Slime mold) and Neurospora crassa [, ]. Annexins are absent from yeasts and prokaryotes []. The plant annexins are somewhat distinct from those found in other taxa []. Most eukaryotic species have 1-20 annexin (ANX) genes. All annexins share a core domain made up of four similar repeats, each approximately 70 amino acids long []. Each individual annexin repeat (sometimes referred to as endonexin folds) is folded into five alpha-helices, and in turn are wound into a right-handed super-helix; they usually contain a characteristic 'type 2' motif for binding calcium ions with the sequence 'GxGT-[38 residues]-D/E'. Animal and fungal annexins also have variable amino-terminal domains. The core domains of most vertebrate annexins have been analysed by X-ray crystallography, revealing conservation of their secondary and tertiary structures despite only 45-55% amino-acid identity among individual members. The four repeats pack into a structure that resembles a flattened disc, with a slightly convex surface on which the Ca 2+ -binding loops are located and a concave surface at which the amino and carboxyl termini come into close apposition. Annexins are traditionally thought of as calcium-dependent phospholipid-binding proteins, but recent work suggests a more complex set of functions. The famiy has been linked with inhibition of phospholipase activity, exocytosis and endoctyosis, signal transduction, organisation of the extracellular matrix, resistance to reactive oxygen species and DNA replication [].; GO: 0005509 calcium ion binding, 0005544 calcium-dependent phospholipid binding; PDB: 1N44_A 1BC1_A 2IE6_A 2H0M_A 1A8B_A 2H0K_A 1BCW_A 1BCZ_A 1N42_A 1BC0_A ....
Probab=99.71 E-value=2.9e-17 Score=117.05 Aligned_cols=66 Identities=36% Similarity=0.637 Sum_probs=63.4
Q ss_pred hHHHHHHhhccCCCCchhHHHHHHHhccHhhHHHHHHHHHhhhCCchHhhhhhcCcHHHHHHHHHh
Q 021057 248 HFAEVIRTSIVGFGTDEAALNRAIITRAEVDMKLIKEVYPIMYKNTLEDDVIGDTSGDYQDFLLTL 313 (318)
Q Consensus 248 ~~A~~l~~a~~g~gtd~~~L~ril~~r~e~dl~~Ik~~y~~~yg~~L~~~i~~~~sg~y~~~Ll~l 313 (318)
++|+.|+.||+|+|+|+..|++|+++|++.++..|+++|++.||++|.++|++++||||+++|++|
T Consensus 1 ~DA~~l~~a~~~~g~de~~li~Il~~rs~~ql~~i~~~Y~~~~g~~L~~~i~~e~sGd~~~~Ll~l 66 (66)
T PF00191_consen 1 YDAELLHAALKGWGTDEDVLIEILCTRSPAQLRAIKQAYKKKYGKDLEEDIKKETSGDFEKLLLAL 66 (66)
T ss_dssp HHHHHHHHHHSSSSSTHHHHHHHHHHSTHHHHHHHHHHHHHHHSS-HHHHHHHHSTHHHHHHHHHH
T ss_pred CHHHHHHHHccCCCCChhHhhhHHhhhcccccceeehhhhhhhHHHHHHHHHHhCCHHHHHHHHhC
Confidence 589999999999999999999999999999999999999999999999999999999999999986
No 5
>smart00335 ANX Annexin repeats.
Probab=99.54 E-value=1.3e-14 Score=98.69 Aligned_cols=53 Identities=43% Similarity=0.680 Sum_probs=51.4
Q ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHhhchhHHHHHhhcccccHHHHHHHH
Q 021057 28 GTDEKAVTWVLSQRTASQRQLIRQAYQRLYNESLIDNITSELSGDFKDAVIMW 80 (318)
Q Consensus 28 gtde~~li~il~~rs~~q~~~i~~~Y~~~y~~~L~~~l~~e~sG~~~~~l~~l 80 (318)
||||..|++|+++|++.||+.|+++|+..||++|.++|++++||+|++++++|
T Consensus 1 gtde~~l~~il~~rs~~~~~~i~~~Y~~~~~~~L~~~i~~e~sG~~~~~l~~l 53 (53)
T smart00335 1 GTDEKTLIEILASRSNAQLQAIKQAYKKRYGKDLEDDIKSETSGDFEKLLLAL 53 (53)
T ss_pred CCCHHHHHHHHHcCCHHHHHHHHHHHHHHhCccHHHHHHHhcChHHHHHHHhC
Confidence 79999999999999999999999999999999999999999999999999875
No 6
>smart00335 ANX Annexin repeats.
Probab=99.45 E-value=1.4e-13 Score=93.61 Aligned_cols=53 Identities=40% Similarity=0.702 Sum_probs=51.7
Q ss_pred CCchhHHHHHHHhccHhhHHHHHHHHHhhhCCchHhhhhhcCcHHHHHHHHHh
Q 021057 261 GTDEAALNRAIITRAEVDMKLIKEVYPIMYKNTLEDDVIGDTSGDYQDFLLTL 313 (318)
Q Consensus 261 gtd~~~L~ril~~r~e~dl~~Ik~~y~~~yg~~L~~~i~~~~sg~y~~~Ll~l 313 (318)
|||+..|++|+++|++.++..|+++|++.||++|.++|++++||+|+++|++|
T Consensus 1 gtde~~l~~il~~rs~~~~~~i~~~Y~~~~~~~L~~~i~~e~sG~~~~~l~~l 53 (53)
T smart00335 1 GTDEKTLIEILASRSNAQLQAIKQAYKKRYGKDLEDDIKSETSGDFEKLLLAL 53 (53)
T ss_pred CCCHHHHHHHHHcCCHHHHHHHHHHHHHHhCccHHHHHHHhcChHHHHHHHhC
Confidence 79999999999999999999999999999999999999999999999999975
No 7
>PF13766 ECH_C: 2-enoyl-CoA Hydratase C-terminal region; PDB: 3JU1_A 3BPT_A.
Probab=71.27 E-value=13 Score=29.27 Aligned_cols=49 Identities=16% Similarity=0.232 Sum_probs=38.8
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHhhCCCHHHHhhhhc--------cccHHHHHHHHH
Q 021057 191 QVVHILATRNFFQLKATFERYEQMHGSPIDEDISSVG--------KGDLVSLMKMVI 239 (318)
Q Consensus 191 ~li~Il~~rs~~~l~~I~~~Y~~~yg~~L~~~I~~e~--------sG~~~~~Ll~lv 239 (318)
.....|.++||.-+..++..+++-.+.+|.+.++.|+ .|||..++.+++
T Consensus 35 ~~~~~l~~~SP~Sl~vt~~~l~~~~~~sl~e~l~~E~~~a~~~~~~~DF~EGVRA~L 91 (118)
T PF13766_consen 35 KTLETLRSGSPLSLKVTFEQLRRGRNLSLAECLRMEYRLASRCMRHPDFAEGVRALL 91 (118)
T ss_dssp HHHHHHCCS-HHHHHHHHHHHHCCTTS-HHHHHHHHHHHHHHHHCCSCHHHHHHHHT
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 4567788899999999999999988899999998875 577777776654
No 8
>PF13758 Prefoldin_3: Prefoldin subunit
Probab=59.44 E-value=63 Score=24.60 Aligned_cols=44 Identities=25% Similarity=0.319 Sum_probs=36.4
Q ss_pred CCCCCChHHHHHHHHHhhhcCCCCHHHHHHHHcC-----CCHHHHHHHH
Q 021057 7 PDLVPPPEQDAKRLKEAFDGLGTDEKAVTWVLSQ-----RTASQRQLIR 50 (318)
Q Consensus 7 ~~~~~~~~~da~~L~~A~~g~gtde~~li~il~~-----rs~~q~~~i~ 50 (318)
|...+++..|...+++-++|...+++.|-+||+. ||++|+-.+-
T Consensus 25 ~~~~~~~~e~l~~i~r~f~g~lv~~kEi~~ilG~~~~i~Rt~~Qvv~~l 73 (99)
T PF13758_consen 25 PEDDDATREDLLRIRRDFGGSLVTEKEIKEILGEGQGITRTREQVVDVL 73 (99)
T ss_pred cccCCCCHHHHHHHHHhcCcccccHHHHHHHhCCCCCCCcCHHHHHHHH
Confidence 4434577788899999999999999999999998 8888887663
No 9
>COG5173 SEC6 Exocyst complex subunit SEC6 [Intracellular trafficking and secretion]
Probab=51.84 E-value=65 Score=32.25 Aligned_cols=177 Identities=15% Similarity=0.196 Sum_probs=87.8
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHhhchhHHHHHhhcccccHHHHHH-HHh------CCcHHHHHHHHHHHHhcCCCCCCc
Q 021057 33 AVTWVLSQRTASQRQLIRQAYQRLYNESLIDNITSELSGDFKDAVI-MWT------LDPAERDAKMAKEALKKSKSGVKH 105 (318)
Q Consensus 33 ~li~il~~rs~~q~~~i~~~Y~~~y~~~L~~~l~~e~sG~~~~~l~-~l~------~~~~~~da~~l~~A~~g~~~~gtd 105 (318)
.+-+.+....|.. .-|...|.+.|.+.|...+..+.+-.....+. ++. .+-.+.++-....+++|. .+.+
T Consensus 295 ~i~e~i~~~~pp~-~NI~~~y~~~YqecL~~L~td~v~~~~~a~~iL~ii~f~~~y~~t~e~~f~f~~dev~~~--l~d~ 371 (742)
T COG5173 295 FIRENISLSFPPF-DNILTLYHNNYQECLLKLFTDEVTERLDAGEILAIIEFVGNYYNTIESKFNFIADEVGGR--LLDN 371 (742)
T ss_pred HHHHHccccCCch-HHHHHHHHHHHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHhCCccHHHhccc--ccCC
Confidence 3445555555443 34678999999999999888887766544332 221 233455555556666663 5555
Q ss_pred hH-HHHHHhhcCCHHHHHHHHHHHHhhhcccHHHHHHhhcCccHHHHHHHHHhhhccCccc-------cCHHHHHHHHHH
Q 021057 106 LQ-VIVEISCASSPYHLAAVRQAYCALFDCSIEEDITAVVSMPLRKVLLRLVSSFRYDKEL-------LDIEAAASEANQ 177 (318)
Q Consensus 106 e~-~lieIl~~rs~~~l~~i~~~Y~~~y~~sL~~~i~~~~sg~~~~~l~~ll~~~r~~~~~-------vd~~~a~~da~~ 177 (318)
|. .|. +.|-.....-+.+.+.+-+...+...+ .|++++. +-+.-+.. -+.
T Consensus 372 e~g~L~---------------~~Yt~l~~~Kl~EWv~nl~~~evd~F~------~R~~ep~~Dsdg~l~l~Gt~~~-fQm 429 (742)
T COG5173 372 ETGELL---------------EKYTKLAQEKLKEWVMNLTRIEVDKFY------ARNEEPSRDSDGKLVLPGTVSL-FQM 429 (742)
T ss_pred cchHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHH------HcCCCCCcCCCcCccCccHHHH-HHH
Confidence 53 232 445555444444443332222222211 2322211 11111111 111
Q ss_pred HHHHHhcC-CCChhhHHHHHhcCCHHHHHHHHHHHHHhhCCCHHHHhhhhccc--------cHHHHHHHH
Q 021057 178 LHEAIKAK-QLDHDQVVHILATRNFFQLKATFERYEQMHGSPIDEDISSVGKG--------DLVSLMKMV 238 (318)
Q Consensus 178 L~~A~~~~-~~~~~~li~Il~~rs~~~l~~I~~~Y~~~yg~~L~~~I~~e~sG--------~~~~~Ll~l 238 (318)
+..-++-- +++...++.|+ .+|+..+...|++.....|.+.+++.++| -+..-|+++
T Consensus 430 itqQ~e~ia~tn~sdvvgiV----~~~i~~~~tk~q~~wks~l~ee~~kq~~~npEs~~p~Gl~eyliav 495 (742)
T COG5173 430 ITQQLEPIAFTNRSDVVGIV----FAHITRTITKYQEIWKSNLVEEMDKQFKSNPESSSPAGLEEYLIAV 495 (742)
T ss_pred HHHHhhhhhcCCccchhhhh----HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCcchHHHHHHHH
Confidence 22222211 12332333333 35566777788887777788888776643 455555553
No 10
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=42.72 E-value=78 Score=20.07 Aligned_cols=33 Identities=30% Similarity=0.379 Sum_probs=27.5
Q ss_pred HHHHHHHHhhhcCCCC-HHHHHHHHc-CCCHHHHH
Q 021057 15 QDAKRLKEAFDGLGTD-EKAVTWVLS-QRTASQRQ 47 (318)
Q Consensus 15 ~da~~L~~A~~g~gtd-e~~li~il~-~rs~~q~~ 47 (318)
.+-+.|.+|++-.|.+ =..|-+-+. +||..|..
T Consensus 7 eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~ 41 (48)
T PF00249_consen 7 EEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCR 41 (48)
T ss_dssp HHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHH
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHH
Confidence 5567889999999988 788888888 89988764
No 11
>PF14003 YlbE: YlbE-like protein
Probab=41.95 E-value=76 Score=22.18 Aligned_cols=38 Identities=18% Similarity=0.142 Sum_probs=31.3
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHhhCCCHHHHhhhhccc
Q 021057 191 QVVHILATRNFFQLKATFERYEQMHGSPIDEDISSVGKG 229 (318)
Q Consensus 191 ~li~Il~~rs~~~l~~I~~~Y~~~yg~~L~~~I~~e~sG 229 (318)
.|-++| +|+|.++...-.++...||+++-+.|++-..+
T Consensus 13 ~WYR~L-sR~P~~l~~fe~~a~~~y~kT~p~rVek~~n~ 50 (65)
T PF14003_consen 13 IWYRIL-SRNPEELEAFEKEAKHFYKKTIPHRVEKFSNQ 50 (65)
T ss_pred HHHHHH-ccCHHHHHHHHHHHHHHHhccccHHHHHHHhH
Confidence 455666 48899999999999999999999999875433
No 12
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.14 E-value=2e+02 Score=24.93 Aligned_cols=66 Identities=6% Similarity=0.144 Sum_probs=44.8
Q ss_pred CCHHHHHHHHHHHHhhhcccHHHHHHhhcCccHHHHHHHHHhhhccCccccC-HHHHHHHHHHHHHHH
Q 021057 116 SSPYHLAAVRQAYCALFDCSIEEDITAVVSMPLRKVLLRLVSSFRYDKELLD-IEAAASEANQLHEAI 182 (318)
Q Consensus 116 rs~~~l~~i~~~Y~~~y~~sL~~~i~~~~sg~~~~~l~~ll~~~r~~~~~vd-~~~a~~da~~L~~A~ 182 (318)
++-+-|.+|++.|.+.||.....++.-.+...|.+.|..-+...-+.+. +| ...++..+.++..-|
T Consensus 75 ipfaFLe~Ik~~F~k~YG~~a~ta~AysmN~EFs~vL~qqm~y~s~~p~-id~lskvkaqv~evk~vM 141 (217)
T KOG0859|consen 75 IPFAFLERIKEDFKKRYGGGAHTAVAYSMNKEFSSVLKQQMQYCSEHPE-ISKLAKVKAQVTEVKGVM 141 (217)
T ss_pred ccHHHHHHHHHHHHHHhccchhHHHHhHhHHHHHHHHHHHHHHHHcCcc-hhHHHHHHHHHHHHHHHH
Confidence 4567899999999999999988888777777777777755554433333 33 244555555555444
No 13
>cd00171 Sec7 Sec7 domain; Domain named after the S. cerevisiae SEC7 gene product. The Sec7 domain is the central domain of the guanine-nucleotide-exchange factors (GEFs) of the ADP-ribosylation factor family of small GTPases (ARFs) . It carries the exchange factor activity.
Probab=34.10 E-value=1.4e+02 Score=25.27 Aligned_cols=53 Identities=23% Similarity=0.311 Sum_probs=42.5
Q ss_pred CChHHHHHHHHHhhhcCCCCHHHHHHHHcCCCHHHHHHHHHHHHHhh---chhHHHHHhh
Q 021057 11 PPPEQDAKRLKEAFDGLGTDEKAVTWVLSQRTASQRQLIRQAYQRLY---NESLIDNITS 67 (318)
Q Consensus 11 ~~~~~da~~L~~A~~g~gtde~~li~il~~rs~~q~~~i~~~Y~~~y---~~~L~~~l~~ 67 (318)
++|..-|+-|+.. -|.|...|-+.|+... +....+.+.|-..+ |.++.+.|+.
T Consensus 32 ~~~~~iA~fl~~~---~~l~k~~ig~~L~~~~-~~~~~vL~~y~~~f~f~~~~i~~ALR~ 87 (185)
T cd00171 32 DSPKEIAKFLYET---EGLNKKAIGEYLGENN-EFNSLVLHEFVDLFDFSGLRLDEALRK 87 (185)
T ss_pred CCHHHHHHHHHhC---CCCCHHHHHHHHcCCc-hHHHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 5788888888886 4579999999999987 45588888899886 6777777765
No 14
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=33.15 E-value=19 Score=33.27 Aligned_cols=48 Identities=27% Similarity=0.395 Sum_probs=38.6
Q ss_pred HHHHHhccHhhHHHHHHHHHhhhCCchHhhhhhcCcHH--HHHHHHHhhc
Q 021057 268 NRAIITRAEVDMKLIKEVYPIMYKNTLEDDVIGDTSGD--YQDFLLTLTG 315 (318)
Q Consensus 268 ~ril~~r~e~dl~~Ik~~y~~~yg~~L~~~i~~~~sg~--y~~~Ll~l~~ 315 (318)
.=+|++|++..|++++++-.++|+....-.+..-++|+ |++++-.|-+
T Consensus 75 nvvLIsRt~~KL~~v~kEI~~~~~vev~~i~~Dft~~~~~ye~i~~~l~~ 124 (312)
T KOG1014|consen 75 NVVLISRTQEKLEAVAKEIEEKYKVEVRIIAIDFTKGDEVYEKLLEKLAG 124 (312)
T ss_pred EEEEEeCCHHHHHHHHHHHHHHhCcEEEEEEEecCCCchhHHHHHHHhcC
Confidence 34678999999999999999999977766666668888 8888765543
No 15
>PF13720 Acetyltransf_11: Udp N-acetylglucosamine O-acyltransferase; Domain 2; PDB: 3I3A_A 3I3X_A 3HSQ_B 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 4EQY_F ....
Probab=33.04 E-value=63 Score=23.60 Aligned_cols=26 Identities=35% Similarity=0.528 Sum_probs=18.5
Q ss_pred CCHHHHHHHHHHHHhhhc--ccHHHHHH
Q 021057 116 SSPYHLAAVRQAYCALFD--CSIEEDIT 141 (318)
Q Consensus 116 rs~~~l~~i~~~Y~~~y~--~sL~~~i~ 141 (318)
-|++++.+|+++|+..|. .++.+.+.
T Consensus 28 fs~~~i~~l~~ayr~l~~~~~~~~~a~~ 55 (83)
T PF13720_consen 28 FSKEEISALRRAYRILFRSGLTLEEALE 55 (83)
T ss_dssp S-HHHHHHHHHHHHHHHTSSS-HHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 478899999999999995 34455443
No 16
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.69 E-value=1.2e+02 Score=26.09 Aligned_cols=49 Identities=12% Similarity=0.104 Sum_probs=39.0
Q ss_pred CCHHHHHHHHHHHHHhhCCCHHHHhhhhccccHHHHHHHHHHhhCCchh
Q 021057 199 RNFFQLKATFERYEQMHGSPIDEDISSVGKGDLVSLMKMVILCIRCPER 247 (318)
Q Consensus 199 rs~~~l~~I~~~Y~~~yg~~L~~~I~~e~sG~~~~~Ll~lv~~~~~~~~ 247 (318)
++..-|..|++.|.+.||.....++...+..+|...|..-+....+-|.
T Consensus 75 ipfaFLe~Ik~~F~k~YG~~a~ta~AysmN~EFs~vL~qqm~y~s~~p~ 123 (217)
T KOG0859|consen 75 IPFAFLERIKEDFKKRYGGGAHTAVAYSMNKEFSSVLKQQMQYCSEHPE 123 (217)
T ss_pred ccHHHHHHHHHHHHHHhccchhHHHHhHhHHHHHHHHHHHHHHHHcCcc
Confidence 3577889999999999999999998888888888888776655444444
No 17
>PF14003 YlbE: YlbE-like protein
Probab=29.45 E-value=60 Score=22.69 Aligned_cols=45 Identities=13% Similarity=0.266 Sum_probs=34.3
Q ss_pred HHHHhccHhhHHHHHHHHHhhhCCchHhhhhhcCcH-HHHHHHHHhh
Q 021057 269 RAIITRAEVDMKLIKEVYPIMYKNTLEDDVIGDTSG-DYQDFLLTLT 314 (318)
Q Consensus 269 ril~~r~e~dl~~Ik~~y~~~yg~~L~~~i~~~~sg-~y~~~Ll~l~ 314 (318)
|+| +|.+.++.....++...|+++.-+.|.+-..| ..-.+++.++
T Consensus 16 R~L-sR~P~~l~~fe~~a~~~y~kT~p~rVek~~n~lqMa~MM~~M~ 61 (65)
T PF14003_consen 16 RIL-SRNPEELEAFEKEAKHFYKKTIPHRVEKFSNQLQMASMMMEMF 61 (65)
T ss_pred HHH-ccCHHHHHHHHHHHHHHHhccccHHHHHHHhHHHHHHHHHHHH
Confidence 555 69999999999999999999999999876444 3444444433
No 18
>PF13720 Acetyltransf_11: Udp N-acetylglucosamine O-acyltransferase; Domain 2; PDB: 3I3A_A 3I3X_A 3HSQ_B 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 4EQY_F ....
Probab=29.37 E-value=47 Score=24.27 Aligned_cols=21 Identities=19% Similarity=0.377 Sum_probs=17.1
Q ss_pred CCCHHHHHHHHHHHHHhhchh
Q 021057 40 QRTASQRQLIRQAYQRLYNES 60 (318)
Q Consensus 40 ~rs~~q~~~i~~~Y~~~y~~~ 60 (318)
+.+.+++..|+++|+..|...
T Consensus 27 Gfs~~~i~~l~~ayr~l~~~~ 47 (83)
T PF13720_consen 27 GFSKEEISALRRAYRILFRSG 47 (83)
T ss_dssp TS-HHHHHHHHHHHHHHHTSS
T ss_pred CCCHHHHHHHHHHHHHHHhCC
Confidence 358899999999999999654
No 19
>PF09888 DUF2115: Uncharacterized protein conserved in archaea (DUF2115); InterPro: IPR019215 This entry represents various hypothetical archaeal proteins, has no known function.
Probab=27.58 E-value=3.6e+02 Score=22.44 Aligned_cols=75 Identities=13% Similarity=0.023 Sum_probs=41.8
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHh-------hhcccHHHHHHhhcCccHHHHHHHHHhhhccCccccCHHHHHHHHHHHHH
Q 021057 108 VIVEISCASSPYHLAAVRQAYCA-------LFDCSIEEDITAVVSMPLRKVLLRLVSSFRYDKELLDIEAAASEANQLHE 180 (318)
Q Consensus 108 ~lieIl~~rs~~~l~~i~~~Y~~-------~y~~sL~~~i~~~~sg~~~~~l~~ll~~~r~~~~~vd~~~a~~da~~L~~ 180 (318)
.|-+.+..-|..+|..++..... .|...+...+...+.+.+.++...--.+.-.+...+|..........+.+
T Consensus 9 ~Lk~~~~~~si~DL~~i~~~l~~~~~~lp~~Yr~~~~~~~~~~~~~~~~eIk~~~~~~~~~~~~~~d~~~~~~~~~~i~~ 88 (163)
T PF09888_consen 9 ILKEEASNYSIYDLMKIRGFLEKDIKYLPPEYREKYIESFFEYFFGTYHEIKNMYRSGSFIEDFEIDEEEFKEFLNMIED 88 (163)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcccccCCHHHHHHHHHHHHH
Confidence 44456666788888888777776 45666666666656555555443222222222233566555555555544
Q ss_pred HH
Q 021057 181 AI 182 (318)
Q Consensus 181 A~ 182 (318)
.+
T Consensus 89 ~~ 90 (163)
T PF09888_consen 89 GC 90 (163)
T ss_pred hh
Confidence 43
No 20
>KOG2286 consensus Exocyst complex subunit SEC6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.41 E-value=6.5e+02 Score=26.15 Aligned_cols=208 Identities=12% Similarity=0.105 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcCCCCCCchHHHHHHhhcCCHHHHHHHHHHHHhhhcccHHHHHHh-hcCccHHHHHHHHHhhhccCc
Q 021057 85 AERDAKMAKEALKKSKSGVKHLQVIVEISCASSPYHLAAVRQAYCALFDCSIEEDITA-VVSMPLRKVLLRLVSSFRYDK 163 (318)
Q Consensus 85 ~~~da~~l~~A~~g~~~~gtde~~lieIl~~rs~~~l~~i~~~Y~~~y~~sL~~~i~~-~~sg~~~~~l~~ll~~~r~~~ 163 (318)
...+...++..+.- |-..+.+.+.-+.|+++. |..+|-..|...|..-+.. .....+..-.+.++.-.+.
T Consensus 235 ~~~~~e~~r~~i~E------dL~~~~~~l~~cfpp~~~-if~~~l~~Yh~~ls~ll~dl~s~~l~~~eil~llawV~~-- 305 (667)
T KOG2286|consen 235 QVRLLEVLRFVIRE------DLRVAKRVLVPCFPPHYN-IFSAYLELYHQALSDLLRDLASEALELREILQLLAWVRN-- 305 (667)
T ss_pred HHHHHHHHHHHHHH------HHHHHHHhhcccCCchhH-HHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHH--
Q ss_pred cccCHHHHHHHHHHHHHHHhcCCCChhhHHHHHhcCCHHHHHHHHHHHHHhhCCCHHHHhhhhccccHHHHHHHHH----
Q 021057 164 ELLDIEAAASEANQLHEAIKAKQLDHDQVVHILATRNFFQLKATFERYEQMHGSPIDEDISSVGKGDLVSLMKMVI---- 239 (318)
Q Consensus 164 ~~vd~~~a~~da~~L~~A~~~~~~~~~~li~Il~~rs~~~l~~I~~~Y~~~yg~~L~~~I~~e~sG~~~~~Ll~lv---- 239 (318)
..........+..+.+..... .+.|+.++.+.|-...-.++.+.+.+-++-+........-
T Consensus 306 -~~~~~~l~~~~~~~~~l~p~l--------------~~~~v~~Ll~~Y~~~~t~n~~ewl~~~~e~e~~~~~~~~~P~rd 370 (667)
T KOG2286|consen 306 -EYYTPLLQLNVDVLRALGPLL--------------RPKHVVALLDLYLERATANMKEWLMNALELEAAAWAKETEPPRD 370 (667)
T ss_pred -HhcChhhhccchhhhhhcCcc--------------ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcc
Q ss_pred ---HhhCCchhhHHHHHHhhccCCCCchhHHHHHHHhccHhhHHHHHHHHHhhhCCchHhhhhhcCcHHHHHHHHHhhcC
Q 021057 240 ---LCIRCPERHFAEVIRTSIVGFGTDEAALNRAIITRAEVDMKLIKEVYPIMYKNTLEDDVIGDTSGDYQDFLLTLTGS 316 (318)
Q Consensus 240 ---~~~~~~~~~~A~~l~~a~~g~gtd~~~L~ril~~r~e~dl~~Ik~~y~~~yg~~L~~~i~~~~sg~y~~~Ll~l~~~ 316 (318)
.+..+-|.-+..++...+......-..|.-.+..-+-..+....+-|.+.+-...+.. +.+..+.|..+++|...+
T Consensus 371 ~~g~~~t~~p~~~fqmi~q~l~~~~~~~~Dl~~~~~~~~~~~v~~f~~~~~~~~~~~~e~~-~~~~~~~l~~y~iA~~N~ 449 (667)
T KOG2286|consen 371 EEGYLYTPGPVIFFQMITQQLQVAAATSSDLSGKILRSLLSEVPSFARNYPKAQDEDQESH-RREQPEGLREYLIANINN 449 (667)
T ss_pred ccccccCcccHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHhc-hhcccccHHHHHHHHHhc
Q ss_pred C
Q 021057 317 K 317 (318)
Q Consensus 317 ~ 317 (318)
+
T Consensus 450 ~ 450 (667)
T KOG2286|consen 450 N 450 (667)
T ss_pred h
No 21
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=27.26 E-value=63 Score=30.61 Aligned_cols=41 Identities=17% Similarity=0.366 Sum_probs=32.3
Q ss_pred hHHHHHHHHHhhhcCCCCHHHHHHHHcCCCHHHHHHHHHHHHHh
Q 021057 13 PEQDAKRLKEAFDGLGTDEKAVTWVLSQRTASQRQLIRQAYQRL 56 (318)
Q Consensus 13 ~~~da~~L~~A~~g~gtde~~li~il~~rs~~q~~~i~~~Y~~~ 56 (318)
...+.+..|+|+.-||||...|-...-+| .|.+|+.-|...
T Consensus 369 s~~e~ekFYKALs~wGtdF~LIs~lfP~R---~RkqIKaKfi~E 409 (507)
T COG5118 369 SKKEIEKFYKALSIWGTDFSLISSLFPNR---ERKQIKAKFIKE 409 (507)
T ss_pred cHHHHHHHHHHHHHhcchHHHHHHhcCch---hHHHHHHHHHHH
Confidence 34788999999999999998888887666 466677777654
No 22
>PF01992 vATP-synt_AC39: ATP synthase (C/AC39) subunit; InterPro: IPR002843 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit C from the A0 complex of A-ATPases, and subunits C and D from the V0 complex of V-ATPases, all of which are involved in the translocation of protons across a membrane. There is more than one type of D subunit in V-ATPases, where the D1 subunit is ubiquitous, while the D2 subunit has limited tissue expressivity, possibly to account for differential functions, targeting or regulation of V-ATPase activity []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 1R5Z_A 1V9M_A 3J0J_M.
Probab=26.92 E-value=4e+02 Score=24.33 Aligned_cols=48 Identities=19% Similarity=0.331 Sum_probs=28.9
Q ss_pred hhHHHHHHhhccCCCCchhHHHHHHHhccHhhHHHHHHHHHh-hhCCchHh
Q 021057 247 RHFAEVIRTSIVGFGTDEAALNRAIITRAEVDMKLIKEVYPI-MYKNTLED 296 (318)
Q Consensus 247 ~~~A~~l~~a~~g~gtd~~~L~ril~~r~e~dl~~Ik~~y~~-~yg~~L~~ 296 (318)
.|+...+..+.+-.|++...+.+++. .++|+.+|+..|+- .||.+.+.
T Consensus 172 ~yy~~~~~~~~~~~~~~~~~l~~~~~--~~iD~~Ni~~~~R~k~~~~~~~~ 220 (337)
T PF01992_consen 172 RYYEDLLKAAKKLSGSEREILRELLG--MEIDLTNIKTILRAKKYGLSPEE 220 (337)
T ss_dssp HHHHHHHHHHH---TSS-HHHHHHHH--HHHHHHHHHHHHHTTTS---GGG
T ss_pred HHHHHHHHHhhccccchHHHHHHHHH--HHHHHHHHHHHHHHhhcCCCHhh
Confidence 46677777776333456655657774 67899999999984 37766654
No 23
>PF11159 DUF2939: Protein of unknown function (DUF2939); InterPro: IPR021330 This bacterial family of proteins has no known function.
Probab=24.26 E-value=1.5e+02 Score=22.01 Aligned_cols=50 Identities=20% Similarity=0.188 Sum_probs=35.8
Q ss_pred hhCCchhhHHHHHHhhccCCCCchhHHHHHHHhccHhhHHHHHHHHHhhhCCchHhhh
Q 021057 241 CIRCPERHFAEVIRTSIVGFGTDEAALNRAIITRAEVDMKLIKEVYPIMYKNTLEDDV 298 (318)
Q Consensus 241 ~~~~~~~~~A~~l~~a~~g~gtd~~~L~ril~~r~e~dl~~Ik~~y~~~yg~~L~~~i 298 (318)
+..-.|.+....|.+|++. .|-..|.+.+ |+..++...+......+...+
T Consensus 8 ~~~~sPy~al~~i~~Ai~~--~D~~~l~~~V------D~~avr~slk~ql~~~~~~~~ 57 (95)
T PF11159_consen 8 YYAASPYYALYQIRQAIQA--HDAAALARYV------DFPAVRASLKDQLNAELVSRI 57 (95)
T ss_pred HHHHCHHHHHHHHHHHHHH--cCHHHHHHHc------CHHHHHHHHHHHHHHHHHhhc
Confidence 3344667789999999986 5666666654 777888877777766666655
No 24
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=20.89 E-value=2e+02 Score=16.98 Aligned_cols=34 Identities=24% Similarity=0.245 Sum_probs=26.7
Q ss_pred HHHHHHHHhhhcCC-CCHHHHHHHHcCCCHHHHHH
Q 021057 15 QDAKRLKEAFDGLG-TDEKAVTWVLSQRTASQRQL 48 (318)
Q Consensus 15 ~da~~L~~A~~g~g-tde~~li~il~~rs~~q~~~ 48 (318)
.+-..|.+++...| .+=..|.+.+.+||..|...
T Consensus 5 eE~~~l~~~~~~~g~~~w~~Ia~~~~~rs~~~~~~ 39 (45)
T cd00167 5 EEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRE 39 (45)
T ss_pred HHHHHHHHHHHHHCcCCHHHHHhHcCCCCHHHHHH
Confidence 45567788888888 78888889998899887653
Done!