Query 021061
Match_columns 318
No_of_seqs 345 out of 2041
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 07:18:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021061.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021061hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10671 copA copper exporting 99.3 1.2E-10 2.7E-15 122.8 17.1 161 26-194 2-164 (834)
2 KOG0207 Cation transport ATPas 99.2 2.6E-10 5.6E-15 116.5 13.8 140 27-196 69-216 (951)
3 PF00403 HMA: Heavy-metal-asso 99.2 1.2E-10 2.6E-15 83.0 7.1 58 132-190 1-62 (62)
4 KOG0207 Cation transport ATPas 99.1 4E-10 8.7E-15 115.1 12.4 132 35-197 3-140 (951)
5 PF00403 HMA: Heavy-metal-asso 99.0 1.2E-09 2.6E-14 77.7 7.9 57 30-86 1-61 (62)
6 KOG1603 Copper chaperone [Inor 99.0 2.5E-09 5.4E-14 78.9 8.4 65 129-194 5-70 (73)
7 COG2608 CopZ Copper chaperone 98.9 9E-09 2E-13 75.5 8.1 64 130-194 3-70 (71)
8 KOG1603 Copper chaperone [Inor 98.8 1.4E-08 3.1E-13 74.9 7.8 66 25-90 3-68 (73)
9 COG2608 CopZ Copper chaperone 98.8 1.7E-08 3.7E-13 74.1 7.9 61 27-87 2-66 (71)
10 KOG4656 Copper chaperone for s 98.5 3.5E-07 7.6E-12 78.8 8.0 69 25-94 5-73 (247)
11 KOG4656 Copper chaperone for s 98.4 1.3E-06 2.9E-11 75.3 8.0 71 129-200 7-77 (247)
12 PLN02957 copper, zinc superoxi 97.9 6.6E-05 1.4E-09 68.0 9.4 70 129-199 6-75 (238)
13 PRK10671 copA copper exporting 97.6 0.00015 3.2E-09 77.0 7.3 63 130-195 4-67 (834)
14 COG2217 ZntA Cation transport 97.5 0.00019 4.2E-09 74.2 7.0 62 130-193 3-69 (713)
15 PLN02957 copper, zinc superoxi 97.3 0.0013 2.9E-08 59.5 9.3 66 27-93 6-71 (238)
16 TIGR00003 copper ion binding p 97.1 0.0047 1E-07 41.4 7.8 60 130-190 3-66 (68)
17 COG2217 ZntA Cation transport 97.0 0.0017 3.7E-08 67.4 7.5 58 28-86 3-65 (713)
18 TIGR00003 copper ion binding p 96.7 0.022 4.8E-07 38.0 9.0 55 28-82 3-61 (68)
19 PRK11033 zntA zinc/cadmium/mer 94.9 0.088 1.9E-06 55.4 8.2 64 128-192 52-117 (741)
20 PRK11033 zntA zinc/cadmium/mer 92.6 0.36 7.8E-06 50.9 7.5 58 26-83 52-111 (741)
21 TIGR02052 MerP mercuric transp 87.3 5.7 0.00012 28.6 8.3 63 130-193 24-90 (92)
22 cd00371 HMA Heavy-metal-associ 74.6 15 0.00032 21.6 6.9 49 136-184 6-56 (63)
23 KOG2236 Uncharacterized conser 71.9 9.4 0.0002 37.5 5.9 12 270-281 434-445 (483)
24 PRK13748 putative mercuric red 71.9 17 0.00037 36.8 8.2 64 132-196 3-69 (561)
25 COG1888 Uncharacterized protei 71.3 14 0.0003 28.2 5.4 48 146-194 24-79 (97)
26 TIGR02052 MerP mercuric transp 70.8 21 0.00046 25.5 6.6 42 28-69 24-66 (92)
27 PF02680 DUF211: Uncharacteriz 64.0 19 0.00041 27.7 5.0 63 130-194 6-77 (95)
28 cd00371 HMA Heavy-metal-associ 60.2 32 0.00069 19.9 5.9 37 33-69 4-41 (63)
29 COG1888 Uncharacterized protei 58.0 75 0.0016 24.3 7.2 62 25-86 4-74 (97)
30 PF01883 DUF59: Domain of unkn 57.9 17 0.00036 26.0 3.7 32 28-59 35-72 (72)
31 COG2177 FtsX Cell division pro 55.9 94 0.002 29.1 9.3 89 29-162 63-152 (297)
32 PF02162 XYPPX: XYPPX repeat ( 54.3 12 0.00027 18.6 1.6 6 289-294 6-11 (15)
33 PF01883 DUF59: Domain of unkn 51.2 23 0.0005 25.2 3.5 33 129-161 34-72 (72)
34 PRK13748 putative mercuric red 43.8 57 0.0012 32.9 6.3 40 30-69 3-43 (561)
35 PF02680 DUF211: Uncharacteriz 42.6 1.6E+02 0.0034 22.8 6.9 61 25-86 3-72 (95)
36 COG0841 AcrB Cation/multidrug 42.1 3.8E+02 0.0081 29.7 12.4 123 40-185 62-208 (1009)
37 KOG1924 RhoA GTPase effector D 40.1 64 0.0014 34.2 5.8 9 175-183 455-463 (1102)
38 PRK10553 assembly protein for 38.1 1.2E+02 0.0025 23.0 5.7 43 142-184 18-61 (87)
39 PF06495 Transformer: Fruit fl 36.7 62 0.0014 27.7 4.3 11 277-287 142-152 (182)
40 PF03927 NapD: NapD protein; 35.1 1.5E+02 0.0033 21.7 5.8 41 143-184 17-58 (79)
41 PF01206 TusA: Sulfurtransfera 34.3 1E+02 0.0022 21.5 4.7 53 132-194 2-57 (70)
42 PRK06418 transcription elongat 33.1 1.4E+02 0.0031 25.5 6.0 68 131-198 8-100 (166)
43 TIGR03406 FeS_long_SufT probab 33.0 56 0.0012 28.1 3.6 34 28-61 114-153 (174)
44 PRK14054 methionine sulfoxide 31.4 79 0.0017 27.1 4.3 44 141-184 11-76 (172)
45 TIGR02945 SUF_assoc FeS assemb 29.4 1.3E+02 0.0029 22.6 5.0 40 144-188 58-97 (99)
46 PRK11023 outer membrane lipopr 27.6 4E+02 0.0087 23.0 10.5 110 35-179 45-167 (191)
47 PF08712 Nfu_N: Scaffold prote 26.9 1.7E+02 0.0036 22.0 4.9 41 144-186 37-79 (87)
48 PRK10555 aminoglycoside/multid 26.0 9.3E+02 0.02 26.7 13.3 43 143-185 159-209 (1037)
49 PRK09577 multidrug efflux prot 25.5 8.9E+02 0.019 26.8 12.1 43 143-185 158-208 (1032)
50 PF05663 DUF809: Protein of un 24.8 1.5E+02 0.0032 22.9 4.3 43 141-184 48-90 (138)
51 TIGR03406 FeS_long_SufT probab 24.7 1.5E+02 0.0033 25.4 4.9 53 130-187 114-172 (174)
52 PF14437 MafB19-deam: MafB19-l 24.6 1.7E+02 0.0037 24.4 4.9 40 27-67 100-141 (146)
53 TIGR02945 SUF_assoc FeS assemb 24.1 1.1E+02 0.0023 23.2 3.6 21 42-62 58-78 (99)
54 cd04888 ACT_PheB-BS C-terminal 23.6 1.7E+02 0.0036 20.4 4.3 32 130-161 42-74 (76)
55 PRK10503 multidrug efflux syst 23.1 9.4E+02 0.02 26.7 11.8 42 144-185 169-219 (1040)
56 PF13732 DUF4162: Domain of un 22.3 2E+02 0.0043 20.7 4.6 43 150-194 26-69 (84)
57 PF14437 MafB19-deam: MafB19-l 22.1 1.8E+02 0.004 24.2 4.7 40 129-169 100-141 (146)
58 PF09580 Spore_YhcN_YlaJ: Spor 22.0 1.8E+02 0.004 24.4 4.9 32 140-171 74-105 (177)
59 PRK14054 methionine sulfoxide 20.4 2E+02 0.0043 24.7 4.7 28 38-65 10-37 (172)
No 1
>PRK10671 copA copper exporting ATPase; Provisional
Probab=99.27 E-value=1.2e-10 Score=122.76 Aligned_cols=161 Identities=19% Similarity=0.343 Sum_probs=113.0
Q ss_pred ceEEEEEEE-eeCHHHHHHHHHHHhcCCCeeEEEEecCCCEEEEeccCCHHHHHHHHHhcccCcccccCCCCCCCCCCCC
Q 021061 26 VVTVVLKVD-LHCEGCAKKIKRAMKNYEGVVDVKTDCGANKVTVTGKVEPAKLKERLEAKTKKKVDLVSPQPKKDAGGGE 104 (318)
Q Consensus 26 ~~~v~lkV~-m~C~~Ca~kIe~~L~~l~GV~~v~v~~~~~~v~V~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~ 104 (318)
+.+++|.|+ |+|.+|+.+|+++|++++||..+.+++. +.+|....+...+...|++. ++.+.+.++..........
T Consensus 2 ~~~~~l~V~gmtC~~C~~~i~~al~~~~gv~~v~v~~~--~~~v~~~~~~~~i~~~i~~~-Gy~~~~~~~~~~~~~~~~~ 78 (834)
T PRK10671 2 SQTIDLTLDGLSCGHCVKRVKESLEQRPDVEQADVSIT--EAHVTGTASAEALIETIKQA-GYDASVSHPKAKPLTESSI 78 (834)
T ss_pred CeEEEEEECCcccHHHHHHHHHHHhcCCCcceEEEeee--EEEEEecCCHHHHHHHHHhc-CCccccccccccccccccc
Confidence 356899999 9999999999999999999999999984 56666667888999999854 4466554321111000000
Q ss_pred CcccccccCCCCCCCcccCCCCCcceEEEEE-eechhhhHHHHHHHhhcCCCccEEeecCCCCeEEEEecCCHHHHHHHH
Q 021061 105 KKSEEKSEKKPDDKKSEEKKPPKESTVVLKI-RLHCEGCISKIKKIIYKTKGVDNVTIDGGKDLVTVKGTMDVKELVPYL 183 (318)
Q Consensus 105 ~~~~~~~~~k~~~~~~~~~~~~~~~~~~l~v-gm~C~~C~~kI~k~l~~~~GV~sv~vd~~~~~v~V~g~~d~~~l~~~l 183 (318)
. .+.....+. ..+.. ......++.|.| ||+|..|+..|++.+..++||.++.+++.++++.|.+..+...+...+
T Consensus 79 ~-~~~~~~~~~--~~~~~-~~~~~~~~~l~V~Gm~Ca~Ca~~Ie~~L~~~~GV~~a~vnl~t~~~~V~~~~s~~~I~~~I 154 (834)
T PRK10671 79 P-SEALTAASE--ELPAA-TADDDDSQQLLLSGMSCASCVSRVQNALQSVPGVTQARVNLAERTALVMGSASPQDLVQAV 154 (834)
T ss_pred C-chhhhhhhh--hcccc-ccCcCceEEEEeCCcCcHHHHHHHHHHHhcCCCceeeeeecCCCeEEEEccCCHHHHHHHH
Confidence 0 000000000 00000 001123577889 999999999999999999999999999999998887667788888888
Q ss_pred HHhcCCCeEEc
Q 021061 184 KEKLKRNVEVV 194 (318)
Q Consensus 184 ~~k~g~~a~~v 194 (318)
+ .+|+.+.++
T Consensus 155 ~-~~Gy~a~~~ 164 (834)
T PRK10671 155 E-KAGYGAEAI 164 (834)
T ss_pred H-hcCCCcccc
Confidence 8 888876543
No 2
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=99.18 E-value=2.6e-10 Score=116.48 Aligned_cols=140 Identities=21% Similarity=0.397 Sum_probs=116.9
Q ss_pred eEEEEEEE-eeCHHHHHHHHHHHhcCCCeeEEEEecCCCEEEEec---cCCHHHHHHHHHhcccCcccccCCCCCCCCCC
Q 021061 27 VTVVLKVD-LHCEGCAKKIKRAMKNYEGVVDVKTDCGANKVTVTG---KVEPAKLKERLEAKTKKKVDLVSPQPKKDAGG 102 (318)
Q Consensus 27 ~~v~lkV~-m~C~~Ca~kIe~~L~~l~GV~~v~v~~~~~~v~V~~---~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~ 102 (318)
.+..|++. |+|.+|++.|++.|+.+.||.++.+.+...++++.. ..+...+.+.++ ..++.+.++....
T Consensus 69 ~~~~l~v~GmtC~scv~~i~~~l~~~~gv~~~~val~~~~~~v~~dp~v~s~~~~~e~ie-~~gf~a~~i~~~~------ 141 (951)
T KOG0207|consen 69 SKCYLSVNGMTCASCVATIERNLRKIEGVESAVVALSASKAEVIYDPAVTSPDSIAESIE-DLGFSAELIESVN------ 141 (951)
T ss_pred ceeEEEecCceeHHHHHHHHHHhhccCCcceEEEEeeccceeEEECCcccCchhHHHHHH-hcCccceehhccc------
Confidence 46789999 999999999999999999999999999999999974 367788999998 4555554433211
Q ss_pred CCCcccccccCCCCCCCcccCCCCCcceEEEEE-eechhhhHHHHHHHhhcCCCccEEeecCCCCeEEEEe---cCCHHH
Q 021061 103 GEKKSEEKSEKKPDDKKSEEKKPPKESTVVLKI-RLHCEGCISKIKKIIYKTKGVDNVTIDGGKDLVTVKG---TMDVKE 178 (318)
Q Consensus 103 ~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~l~v-gm~C~~C~~kI~k~l~~~~GV~sv~vd~~~~~v~V~g---~~d~~~ 178 (318)
.....++.|.| ||.|.+|+.+|++.|.+++||.++++++.++++.|.. .+.+.+
T Consensus 142 ----------------------~~~~~~i~L~v~g~~c~s~~~~ie~~l~~l~gV~~~sv~~~t~~~~V~~~~~~~~pr~ 199 (951)
T KOG0207|consen 142 ----------------------GNSNQKIYLDVLGMTCASCVSKIESILERLRGVKSFSVSLATDTAIVVYDPEITGPRD 199 (951)
T ss_pred ----------------------CCCCCcEEEEeecccccchhhhhHHHHhhccCeeEEEEeccCCceEEEecccccChHH
Confidence 01115789999 9999999999999999999999999999999999973 378899
Q ss_pred HHHHHHHhcCCCeEEccC
Q 021061 179 LVPYLKEKLKRNVEVVPA 196 (318)
Q Consensus 179 l~~~l~~k~g~~a~~v~~ 196 (318)
+++.|. .+++.+.+.+.
T Consensus 200 i~k~ie-~~~~~~~~~~~ 216 (951)
T KOG0207|consen 200 IIKAIE-ETGFEASVRPY 216 (951)
T ss_pred HHHHHH-hhcccceeeec
Confidence 999999 88887776653
No 3
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=99.15 E-value=1.2e-10 Score=82.97 Aligned_cols=58 Identities=28% Similarity=0.513 Sum_probs=53.0
Q ss_pred EEEE-eechhhhHHHHHHHhhcCCCccEEeecCCCCeEEEEec---CCHHHHHHHHHHhcCCC
Q 021061 132 VLKI-RLHCEGCISKIKKIIYKTKGVDNVTIDGGKDLVTVKGT---MDVKELVPYLKEKLKRN 190 (318)
Q Consensus 132 ~l~v-gm~C~~C~~kI~k~l~~~~GV~sv~vd~~~~~v~V~g~---~d~~~l~~~l~~k~g~~ 190 (318)
+|+| +|+|.+|+.+|+++|.+++||.++.+|+.+++++|.+. ++.++|.++|+ ++||.
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~~~v~v~~~~~~~~~~~i~~~i~-~~Gy~ 62 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLETKTVTVTYDPDKTSIEKIIEAIE-KAGYE 62 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEESTTTSCHHHHHHHHH-HTTSE
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCCCEEEEEEecCCCCHHHHHHHHH-HhCcC
Confidence 5788 99999999999999999999999999999999999966 45599999999 88873
No 4
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=99.13 E-value=4e-10 Score=115.11 Aligned_cols=132 Identities=19% Similarity=0.390 Sum_probs=113.1
Q ss_pred eeCHHHHHHHHHHHhcCCCeeEEEEecCCCEEEEec--cCCHHHHHHHHHhcccCcccccCCCCCCCCCCCCCccccccc
Q 021061 35 LHCEGCAKKIKRAMKNYEGVVDVKTDCGANKVTVTG--KVEPAKLKERLEAKTKKKVDLVSPQPKKDAGGGEKKSEEKSE 112 (318)
Q Consensus 35 m~C~~Ca~kIe~~L~~l~GV~~v~v~~~~~~v~V~~--~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (318)
|+|..|++.|+.+++..+||.++.|++..++++|.. .++++.|.++|+. .++.+.+++...
T Consensus 3 mtc~ac~~si~~~~~~~~g~~~i~vsl~~~~~~v~~~~~~~~~~i~~~ied-~gf~~~~~~~~~---------------- 65 (951)
T KOG0207|consen 3 MTCSACSNSIEKAISRKPGVQKIEVSLAQKRANVSYDNIVSPESIKETIED-MGFEASLLSDSE---------------- 65 (951)
T ss_pred ccHHHHhhhHHHHHhcCCCceeEEEEeccccceEEEeeccCHHHHHHHhhc-ccceeeecccCc----------------
Confidence 899999999999999999999999999999999975 4788999999995 455665543221
Q ss_pred CCCCCCCcccCCCCCcceEEEEE-eechhhhHHHHHHHhhcCCCccEEeecCCCCeEEEE---ecCCHHHHHHHHHHhcC
Q 021061 113 KKPDDKKSEEKKPPKESTVVLKI-RLHCEGCISKIKKIIYKTKGVDNVTIDGGKDLVTVK---GTMDVKELVPYLKEKLK 188 (318)
Q Consensus 113 ~k~~~~~~~~~~~~~~~~~~l~v-gm~C~~C~~kI~k~l~~~~GV~sv~vd~~~~~v~V~---g~~d~~~l~~~l~~k~g 188 (318)
....+..|.| ||+|.+|++.|++.|+++.||.++.+.+......|. ....++.+.+.+. ++|
T Consensus 66 -------------~~~~~~~l~v~GmtC~scv~~i~~~l~~~~gv~~~~val~~~~~~v~~dp~v~s~~~~~e~ie-~~g 131 (951)
T KOG0207|consen 66 -------------ITASKCYLSVNGMTCASCVATIERNLRKIEGVESAVVALSASKAEVIYDPAVTSPDSIAESIE-DLG 131 (951)
T ss_pred -------------cccceeEEEecCceeHHHHHHHHHHhhccCCcceEEEEeeccceeEEECCcccCchhHHHHHH-hcC
Confidence 2233778999 999999999999999999999999999999999987 3478899999999 999
Q ss_pred CCeEEccCC
Q 021061 189 RNVEVVPAK 197 (318)
Q Consensus 189 ~~a~~v~~~ 197 (318)
+.++++...
T Consensus 132 f~a~~i~~~ 140 (951)
T KOG0207|consen 132 FSAELIESV 140 (951)
T ss_pred ccceehhcc
Confidence 999887553
No 5
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=99.03 E-value=1.2e-09 Score=77.70 Aligned_cols=57 Identities=39% Similarity=0.582 Sum_probs=51.3
Q ss_pred EEEEE-eeCHHHHHHHHHHHhcCCCeeEEEEecCCCEEEEecc---CCHHHHHHHHHhccc
Q 021061 30 VLKVD-LHCEGCAKKIKRAMKNYEGVVDVKTDCGANKVTVTGK---VEPAKLKERLEAKTK 86 (318)
Q Consensus 30 ~lkV~-m~C~~Ca~kIe~~L~~l~GV~~v~v~~~~~~v~V~~~---~~~~~i~~~i~~~~~ 86 (318)
+|+|. |+|++|+++|+++|.+++||.++.+|+.+++++|.+. .++..|.++|++.+|
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~~~v~v~~~~~~~~~~~i~~~i~~~Gy 61 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLETKTVTVTYDPDKTSIEKIIEAIEKAGY 61 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEESTTTSCHHHHHHHHHHTTS
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCCCEEEEEEecCCCCHHHHHHHHHHhCc
Confidence 58898 9999999999999999999999999999999999864 456999999996554
No 6
>KOG1603 consensus Copper chaperone [Inorganic ion transport and metabolism]
Probab=98.99 E-value=2.5e-09 Score=78.91 Aligned_cols=65 Identities=46% Similarity=0.734 Sum_probs=59.1
Q ss_pred ceEEEEEeechhhhHHHHHHHhhcCCCccEEeecCCCCeEEEEecCCHHHHHHHHHHhcC-CCeEEc
Q 021061 129 STVVLKIRLHCEGCISKIKKIIYKTKGVDNVTIDGGKDLVTVKGTMDVKELVPYLKEKLK-RNVEVV 194 (318)
Q Consensus 129 ~~~~l~vgm~C~~C~~kI~k~l~~~~GV~sv~vd~~~~~v~V~g~~d~~~l~~~l~~k~g-~~a~~v 194 (318)
...++++.|+|.+|..+|.+.|..+.||.++.+|...++++|.|.+|+..|+..|++ .+ ..+.++
T Consensus 5 ~~~v~kv~~~C~gc~~kV~~~l~~~~GV~~v~id~~~~kvtV~g~~~p~~vl~~l~k-~~~k~~~~~ 70 (73)
T KOG1603|consen 5 KTVVLKVNMHCEGCARKVKRVLQKLKGVESVDIDIKKQKVTVKGNVDPVKLLKKLKK-TGGKRAELW 70 (73)
T ss_pred cEEEEEECcccccHHHHHHHHhhccCCeEEEEecCCCCEEEEEEecCHHHHHHHHHh-cCCCceEEe
Confidence 467888899999999999999999999999999999999999999999999999994 54 666654
No 7
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=98.89 E-value=9e-09 Score=75.52 Aligned_cols=64 Identities=23% Similarity=0.485 Sum_probs=57.4
Q ss_pred eEEEEE-eechhhhHHHHHHHhhcCCCccEEeecCCCCeEEEE--e-cCCHHHHHHHHHHhcCCCeEEc
Q 021061 130 TVVLKI-RLHCEGCISKIKKIIYKTKGVDNVTIDGGKDLVTVK--G-TMDVKELVPYLKEKLKRNVEVV 194 (318)
Q Consensus 130 ~~~l~v-gm~C~~C~~kI~k~l~~~~GV~sv~vd~~~~~v~V~--g-~~d~~~l~~~l~~k~g~~a~~v 194 (318)
...|+| +|+|.+|+..|+++|.++.||.++.+++..++++|. + .++.++|..+|. .+||.+..+
T Consensus 3 ~~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~~~~~~V~~d~~~~~~~~i~~ai~-~aGy~~~~~ 70 (71)
T COG2608 3 KTTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLEKGTATVTFDSNKVDIEAIIEAIE-DAGYKVEEI 70 (71)
T ss_pred eEEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEcccCeEEEEEcCCcCCHHHHHHHHH-HcCCCeeec
Confidence 568999 999999999999999999999999999999777765 4 589999999999 999988654
No 8
>KOG1603 consensus Copper chaperone [Inorganic ion transport and metabolism]
Probab=98.84 E-value=1.4e-08 Score=74.88 Aligned_cols=66 Identities=45% Similarity=0.800 Sum_probs=58.5
Q ss_pred CceEEEEEEEeeCHHHHHHHHHHHhcCCCeeEEEEecCCCEEEEeccCCHHHHHHHHHhcccCccc
Q 021061 25 GVVTVVLKVDLHCEGCAKKIKRAMKNYEGVVDVKTDCGANKVTVTGKVEPAKLKERLEAKTKKKVD 90 (318)
Q Consensus 25 ~~~~v~lkV~m~C~~Ca~kIe~~L~~l~GV~~v~v~~~~~~v~V~~~~~~~~i~~~i~~~~~~~~~ 90 (318)
.++..++++.|||.+|..+|++.|+.+.||.++.++...++++|.+.+++..|+..|.+.+.+.+.
T Consensus 3 ~~~~~v~kv~~~C~gc~~kV~~~l~~~~GV~~v~id~~~~kvtV~g~~~p~~vl~~l~k~~~k~~~ 68 (73)
T KOG1603|consen 3 PIKTVVLKVNMHCEGCARKVKRVLQKLKGVESVDIDIKKQKVTVKGNVDPVKLLKKLKKTGGKRAE 68 (73)
T ss_pred CccEEEEEECcccccHHHHHHHHhhccCCeEEEEecCCCCEEEEEEecCHHHHHHHHHhcCCCceE
Confidence 356688999999999999999999999999999999999999999999999999999964434443
No 9
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=98.83 E-value=1.7e-08 Score=74.05 Aligned_cols=61 Identities=31% Similarity=0.543 Sum_probs=53.8
Q ss_pred eEEEEEEE-eeCHHHHHHHHHHHhcCCCeeEEEEecCCCEEEEe--c-cCCHHHHHHHHHhcccC
Q 021061 27 VTVVLKVD-LHCEGCAKKIKRAMKNYEGVVDVKTDCGANKVTVT--G-KVEPAKLKERLEAKTKK 87 (318)
Q Consensus 27 ~~v~lkV~-m~C~~Ca~kIe~~L~~l~GV~~v~v~~~~~~v~V~--~-~~~~~~i~~~i~~~~~~ 87 (318)
....|+|+ |+|.+|+.+|+++|..++||.++.+++..+++.|. + .++...|+++|+..+|.
T Consensus 2 ~~~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~~~~~~V~~d~~~~~~~~i~~ai~~aGy~ 66 (71)
T COG2608 2 MKTTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLEKGTATVTFDSNKVDIEAIIEAIEDAGYK 66 (71)
T ss_pred ceEEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEcccCeEEEEEcCCcCCHHHHHHHHHHcCCC
Confidence 45789999 99999999999999999999999999999777776 3 47899999999976663
No 10
>KOG4656 consensus Copper chaperone for superoxide dismutase [Inorganic ion transport and metabolism]
Probab=98.52 E-value=3.5e-07 Score=78.82 Aligned_cols=69 Identities=25% Similarity=0.461 Sum_probs=61.9
Q ss_pred CceEEEEEEEeeCHHHHHHHHHHHhcCCCeeEEEEecCCCEEEEeccCCHHHHHHHHHhcccCcccccCC
Q 021061 25 GVVTVVLKVDLHCEGCAKKIKRAMKNYEGVVDVKTDCGANKVTVTGKVEPAKLKERLEAKTKKKVDLVSP 94 (318)
Q Consensus 25 ~~~~v~lkV~m~C~~Ca~kIe~~L~~l~GV~~v~v~~~~~~v~V~~~~~~~~i~~~i~~~~~~~~~~~~~ 94 (318)
...+++|.|+|+|.+|++.|+..|..++||.++.+++..+.+.|.+...+.+|.+.|+ .+++.+.+...
T Consensus 5 ~~~~~efaV~M~cescvnavk~~L~~V~Gi~~vevdle~q~v~v~ts~p~s~i~~~le-~tGr~Avl~G~ 73 (247)
T KOG4656|consen 5 DTYEAEFAVQMTCESCVNAVKACLKGVPGINSVEVDLEQQIVSVETSVPPSEIQNTLE-NTGRDAVLRGA 73 (247)
T ss_pred CceeEEEEEechhHHHHHHHHHHhccCCCcceEEEEhhhcEEEEEccCChHHHHHHHH-hhChheEEecC
Confidence 3456899999999999999999999999999999999999999999999999999999 67777766543
No 11
>KOG4656 consensus Copper chaperone for superoxide dismutase [Inorganic ion transport and metabolism]
Probab=98.38 E-value=1.3e-06 Score=75.33 Aligned_cols=71 Identities=20% Similarity=0.403 Sum_probs=64.9
Q ss_pred ceEEEEEeechhhhHHHHHHHhhcCCCccEEeecCCCCeEEEEecCCHHHHHHHHHHhcCCCeEEccCCCCc
Q 021061 129 STVVLKIRLHCEGCISKIKKIIYKTKGVDNVTIDGGKDLVTVKGTMDVKELVPYLKEKLKRNVEVVPAKKDD 200 (318)
Q Consensus 129 ~~~~l~vgm~C~~C~~kI~k~l~~~~GV~sv~vd~~~~~v~V~g~~d~~~l~~~l~~k~g~~a~~v~~~~~~ 200 (318)
-+++|.|.|+|.+|+..|+..|..++||.+++||+..+.|.|.+.+-+.+|...|+ .+|+.|.+...+++.
T Consensus 7 ~~~efaV~M~cescvnavk~~L~~V~Gi~~vevdle~q~v~v~ts~p~s~i~~~le-~tGr~Avl~G~G~ps 77 (247)
T KOG4656|consen 7 YEAEFAVQMTCESCVNAVKACLKGVPGINSVEVDLEQQIVSVETSVPPSEIQNTLE-NTGRDAVLRGAGKPS 77 (247)
T ss_pred eeEEEEEechhHHHHHHHHHHhccCCCcceEEEEhhhcEEEEEccCChHHHHHHHH-hhChheEEecCCchh
Confidence 35678889999999999999999999999999999999999999999999999999 999999988665443
No 12
>PLN02957 copper, zinc superoxide dismutase
Probab=97.90 E-value=6.6e-05 Score=67.96 Aligned_cols=70 Identities=23% Similarity=0.451 Sum_probs=62.2
Q ss_pred ceEEEEEeechhhhHHHHHHHhhcCCCccEEeecCCCCeEEEEecCCHHHHHHHHHHhcCCCeEEccCCCC
Q 021061 129 STVVLKIRLHCEGCISKIKKIIYKTKGVDNVTIDGGKDLVTVKGTMDVKELVPYLKEKLKRNVEVVPAKKD 199 (318)
Q Consensus 129 ~~~~l~vgm~C~~C~~kI~k~l~~~~GV~sv~vd~~~~~v~V~g~~d~~~l~~~l~~k~g~~a~~v~~~~~ 199 (318)
.++.|.++|+|..|+.+|++.|..++||.++.+++..++++|....+...|+..|+ ++||.++++.....
T Consensus 6 ~~~~~~VgMsC~~Ca~~Iek~L~~~~GV~~v~vn~~~~~v~V~~~~~~~~I~~aIe-~~Gy~a~~~~~~~~ 75 (238)
T PLN02957 6 LLTEFMVDMKCEGCVAAVKNKLETLEGVKAVEVDLSNQVVRVLGSSPVKAMTAALE-QTGRKARLIGQGDP 75 (238)
T ss_pred EEEEEEECccCHHHHHHHHHHHhcCCCeEEEEEEcCCCEEEEEecCCHHHHHHHHH-HcCCcEEEecCCCc
Confidence 46678889999999999999999999999999999999999987778888999999 99999988866433
No 13
>PRK10671 copA copper exporting ATPase; Provisional
Probab=97.57 E-value=0.00015 Score=77.00 Aligned_cols=63 Identities=21% Similarity=0.394 Sum_probs=56.9
Q ss_pred eEEEEE-eechhhhHHHHHHHhhcCCCccEEeecCCCCeEEEEecCCHHHHHHHHHHhcCCCeEEcc
Q 021061 130 TVVLKI-RLHCEGCISKIKKIIYKTKGVDNVTIDGGKDLVTVKGTMDVKELVPYLKEKLKRNVEVVP 195 (318)
Q Consensus 130 ~~~l~v-gm~C~~C~~kI~k~l~~~~GV~sv~vd~~~~~v~V~g~~d~~~l~~~l~~k~g~~a~~v~ 195 (318)
+++|.| ||+|.+|+.+|+++|.+++||.++.+++ ++.+|.+..+.+.|...+. ++||.+.+..
T Consensus 4 ~~~l~V~gmtC~~C~~~i~~al~~~~gv~~v~v~~--~~~~v~~~~~~~~i~~~i~-~~Gy~~~~~~ 67 (834)
T PRK10671 4 TIDLTLDGLSCGHCVKRVKESLEQRPDVEQADVSI--TEAHVTGTASAEALIETIK-QAGYDASVSH 67 (834)
T ss_pred EEEEEECCcccHHHHHHHHHHHhcCCCcceEEEee--eEEEEEecCCHHHHHHHHH-hcCCcccccc
Confidence 678999 9999999999999999999999999999 4566777788999999999 9999998864
No 14
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=97.52 E-value=0.00019 Score=74.21 Aligned_cols=62 Identities=21% Similarity=0.401 Sum_probs=55.6
Q ss_pred eEEEEE-eechhhhHHHHHHHhhcCCCccEEeecCCCCeEEEEe---cCC-HHHHHHHHHHhcCCCeEE
Q 021061 130 TVVLKI-RLHCEGCISKIKKIIYKTKGVDNVTIDGGKDLVTVKG---TMD-VKELVPYLKEKLKRNVEV 193 (318)
Q Consensus 130 ~~~l~v-gm~C~~C~~kI~k~l~~~~GV~sv~vd~~~~~v~V~g---~~d-~~~l~~~l~~k~g~~a~~ 193 (318)
+..|.| ||+|..|+.+|+ +|.+++||.++.+|+.+++++|.. ..+ .+.+...++ ..||.+..
T Consensus 3 ~~~l~v~Gm~Ca~C~~~ie-~l~~~~gV~~~~vn~~t~~~~v~~~~~~~~~~~~~~~~v~-~~gy~~~~ 69 (713)
T COG2217 3 ETSLSVEGMTCAACASRIE-ALNKLPGVEEARVNLATERATVVYDPEEVDLPADIVAAVE-KAGYSARL 69 (713)
T ss_pred eeEEeecCcCcHHHHHHHH-HHhcCCCeeEEEeecccceEEEEecccccccHHHHHHHHH-hcCccccc
Confidence 567999 999999999999 999999999999999999999973 345 688999998 99998876
No 15
>PLN02957 copper, zinc superoxide dismutase
Probab=97.32 E-value=0.0013 Score=59.46 Aligned_cols=66 Identities=29% Similarity=0.517 Sum_probs=54.8
Q ss_pred eEEEEEEEeeCHHHHHHHHHHHhcCCCeeEEEEecCCCEEEEeccCCHHHHHHHHHhcccCcccccC
Q 021061 27 VTVVLKVDLHCEGCAKKIKRAMKNYEGVVDVKTDCGANKVTVTGKVEPAKLKERLEAKTKKKVDLVS 93 (318)
Q Consensus 27 ~~v~lkV~m~C~~Ca~kIe~~L~~l~GV~~v~v~~~~~~v~V~~~~~~~~i~~~i~~~~~~~~~~~~ 93 (318)
.++.|.+.|+|.+|+.+|++.|..++||..+.+++..++++|........|...|+..+ +.+.+++
T Consensus 6 ~~~~~~VgMsC~~Ca~~Iek~L~~~~GV~~v~vn~~~~~v~V~~~~~~~~I~~aIe~~G-y~a~~~~ 71 (238)
T PLN02957 6 LLTEFMVDMKCEGCVAAVKNKLETLEGVKAVEVDLSNQVVRVLGSSPVKAMTAALEQTG-RKARLIG 71 (238)
T ss_pred EEEEEEECccCHHHHHHHHHHHhcCCCeEEEEEEcCCCEEEEEecCCHHHHHHHHHHcC-CcEEEec
Confidence 45667778999999999999999999999999999999999987677888888888444 4555544
No 16
>TIGR00003 copper ion binding protein. This model describes an apparently copper-specific subfamily of the metal-binding domain HMA (Pfam family pfam00403). Closely related sequences outside this model include mercury resistance proteins and repeated domains of eukaryotic eukaryotic copper transport proteins. Members of this family are strictly prokaryotic. The model identifies both small proteins consisting of just this domain and N-terminal regions of cation (probably copper) transporting ATPases.
Probab=97.05 E-value=0.0047 Score=41.44 Aligned_cols=60 Identities=18% Similarity=0.312 Sum_probs=48.7
Q ss_pred eEEEEE-eechhhhHHHHHHHhhcCCCccEEeecCCCCeEEEEe---cCCHHHHHHHHHHhcCCC
Q 021061 130 TVVLKI-RLHCEGCISKIKKIIYKTKGVDNVTIDGGKDLVTVKG---TMDVKELVPYLKEKLKRN 190 (318)
Q Consensus 130 ~~~l~v-gm~C~~C~~kI~k~l~~~~GV~sv~vd~~~~~v~V~g---~~d~~~l~~~l~~k~g~~ 190 (318)
+..+.| +|+|..|...|++.+....++..+.+++....+.|.. ..+...+...+. ..|+.
T Consensus 3 ~~~~~v~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~ 66 (68)
T TIGR00003 3 KFTVQVMSMTCQHCVDKIEKFVGELEGVSKVQVKLEKASVKVEFDAPQATEICIAEAIL-DAGYE 66 (68)
T ss_pred EEEEEECCeEcHHHHHHHHHHHhcCCCEEEEEEEcCCCEEEEEeCCCCCCHHHHHHHHH-HcCCC
Confidence 356888 9999999999999999999999999999999988863 246667766665 65653
No 17
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=97.02 E-value=0.0017 Score=67.37 Aligned_cols=58 Identities=26% Similarity=0.528 Sum_probs=50.7
Q ss_pred EEEEEEE-eeCHHHHHHHHHHHhcCCCeeEEEEecCCCEEEEecc---CC-HHHHHHHHHhccc
Q 021061 28 TVVLKVD-LHCEGCAKKIKRAMKNYEGVVDVKTDCGANKVTVTGK---VE-PAKLKERLEAKTK 86 (318)
Q Consensus 28 ~v~lkV~-m~C~~Ca~kIe~~L~~l~GV~~v~v~~~~~~v~V~~~---~~-~~~i~~~i~~~~~ 86 (318)
++.|.|. |+|++|+.+|+ +|++++||..+.+|+.+.+++|..+ .+ .+.+...++..+|
T Consensus 3 ~~~l~v~Gm~Ca~C~~~ie-~l~~~~gV~~~~vn~~t~~~~v~~~~~~~~~~~~~~~~v~~~gy 65 (713)
T COG2217 3 ETSLSVEGMTCAACASRIE-ALNKLPGVEEARVNLATERATVVYDPEEVDLPADIVAAVEKAGY 65 (713)
T ss_pred eeEEeecCcCcHHHHHHHH-HHhcCCCeeEEEeecccceEEEEecccccccHHHHHHHHHhcCc
Confidence 5679999 99999999999 9999999999999999999999853 34 6788888886555
No 18
>TIGR00003 copper ion binding protein. This model describes an apparently copper-specific subfamily of the metal-binding domain HMA (Pfam family pfam00403). Closely related sequences outside this model include mercury resistance proteins and repeated domains of eukaryotic eukaryotic copper transport proteins. Members of this family are strictly prokaryotic. The model identifies both small proteins consisting of just this domain and N-terminal regions of cation (probably copper) transporting ATPases.
Probab=96.71 E-value=0.022 Score=37.96 Aligned_cols=55 Identities=22% Similarity=0.368 Sum_probs=45.2
Q ss_pred EEEEEEE-eeCHHHHHHHHHHHhcCCCeeEEEEecCCCEEEEec---cCCHHHHHHHHH
Q 021061 28 TVVLKVD-LHCEGCAKKIKRAMKNYEGVVDVKTDCGANKVTVTG---KVEPAKLKERLE 82 (318)
Q Consensus 28 ~v~lkV~-m~C~~Ca~kIe~~L~~l~GV~~v~v~~~~~~v~V~~---~~~~~~i~~~i~ 82 (318)
+..+.|. |+|..|+..|+..+..+.++..+.+++....+.+.. ..+...+...+.
T Consensus 3 ~~~~~v~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 61 (68)
T TIGR00003 3 KFTVQVMSMTCQHCVDKIEKFVGELEGVSKVQVKLEKASVKVEFDAPQATEICIAEAIL 61 (68)
T ss_pred EEEEEECCeEcHHHHHHHHHHHhcCCCEEEEEEEcCCCEEEEEeCCCCCCHHHHHHHHH
Confidence 4678999 999999999999999999999999999999988874 235555655554
No 19
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=94.94 E-value=0.088 Score=55.41 Aligned_cols=64 Identities=14% Similarity=0.261 Sum_probs=51.4
Q ss_pred cceEEEEE-eechhhhHHHHHHHhhcCCCccEEeecCCCCeEEEEecC-CHHHHHHHHHHhcCCCeE
Q 021061 128 ESTVVLKI-RLHCEGCISKIKKIIYKTKGVDNVTIDGGKDLVTVKGTM-DVKELVPYLKEKLKRNVE 192 (318)
Q Consensus 128 ~~~~~l~v-gm~C~~C~~kI~k~l~~~~GV~sv~vd~~~~~v~V~g~~-d~~~l~~~l~~k~g~~a~ 192 (318)
..++.+.+ +|+|.+|+.+|++.+..++||.++.+++.+.++.|.... ....+...++ ..|+.+.
T Consensus 52 ~~r~~l~V~Gm~C~sCa~~Ie~aL~~~~GV~~v~Vn~at~k~~V~~d~~~~~~I~~aI~-~~Gy~a~ 117 (741)
T PRK11033 52 GTRYSWKVSGMDCPSCARKVENAVRQLAGVNQVQVLFATEKLVVDADNDIRAQVESAVQ-KAGFSLR 117 (741)
T ss_pred CceEEEEECCCCcHHHHHHHHHHHhcCCCeeeEEEEcCCCeEEEEecccchHHHHHHHH-hcccccc
Confidence 44678889 999999999999999999999999999999998876321 1255666666 7787664
No 20
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=92.55 E-value=0.36 Score=50.88 Aligned_cols=58 Identities=22% Similarity=0.410 Sum_probs=46.0
Q ss_pred ceEEEEEEE-eeCHHHHHHHHHHHhcCCCeeEEEEecCCCEEEEeccC-CHHHHHHHHHh
Q 021061 26 VVTVVLKVD-LHCEGCAKKIKRAMKNYEGVVDVKTDCGANKVTVTGKV-EPAKLKERLEA 83 (318)
Q Consensus 26 ~~~v~lkV~-m~C~~Ca~kIe~~L~~l~GV~~v~v~~~~~~v~V~~~~-~~~~i~~~i~~ 83 (318)
..++.+.+. |+|.+|+..|++.+..++||..+.+++.+.++.+.... ....+...++.
T Consensus 52 ~~r~~l~V~Gm~C~sCa~~Ie~aL~~~~GV~~v~Vn~at~k~~V~~d~~~~~~I~~aI~~ 111 (741)
T PRK11033 52 GTRYSWKVSGMDCPSCARKVENAVRQLAGVNQVQVLFATEKLVVDADNDIRAQVESAVQK 111 (741)
T ss_pred CceEEEEECCCCcHHHHHHHHHHHhcCCCeeeEEEEcCCCeEEEEecccchHHHHHHHHh
Confidence 346778899 99999999999999999999999999999998886321 12455555553
No 21
>TIGR02052 MerP mercuric transport protein periplasmic component. This model represents the periplasmic mercury (II) binding protein of the bacterial mercury detoxification system which passes mercuric ion to the MerT transporter for subsequent reduction to Hg(0) by the mercuric reductase MerA. MerP contains a distinctive GMTCXXC motif associated with metal binding. MerP is related to a larger family of metal binding proteins (pfam00403).
Probab=87.30 E-value=5.7 Score=28.64 Aligned_cols=63 Identities=21% Similarity=0.305 Sum_probs=45.6
Q ss_pred eEEEEE-eechhhhHHHHHHHhhcCCCccEEeecCCCCeEEEEe---cCCHHHHHHHHHHhcCCCeEE
Q 021061 130 TVVLKI-RLHCEGCISKIKKIIYKTKGVDNVTIDGGKDLVTVKG---TMDVKELVPYLKEKLKRNVEV 193 (318)
Q Consensus 130 ~~~l~v-gm~C~~C~~kI~k~l~~~~GV~sv~vd~~~~~v~V~g---~~d~~~l~~~l~~k~g~~a~~ 193 (318)
.+.+.+ ++.|..|...++..+....++....+++....+.+.. ..+...+...+. ..++.+++
T Consensus 24 ~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~ 90 (92)
T TIGR02052 24 TVTLEVPGMTCVACPITVETALQKVDGVSKAEVTFKTKLAVVTFDDEKTNVKALTEATT-DAGYPSSL 90 (92)
T ss_pred EEEEEECCeEcHHHHHHHHHHHhcCCCEEEEEEEecCCEEEEEECCCCCCHHHHHHHHH-hcCCCeEe
Confidence 345667 9999999999999999999988888888777765542 235555555555 66665543
No 22
>cd00371 HMA Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain contains two cysteine residues that are important in binding and transfer of metal ions, such as copper, cadmium, cobalt and zinc. In the case of copper, stoichiometry of binding is one Cu+ ion per binding domain. Repeats of the HMA domain in copper chaperone has been associated with Menkes/Wilson disease due to binding of multiple copper ions.
Probab=74.56 E-value=15 Score=21.56 Aligned_cols=49 Identities=33% Similarity=0.556 Sum_probs=34.7
Q ss_pred eechhhhHHHHHHHhhcCCCccEEeecCCCCeEEEEec--CCHHHHHHHHH
Q 021061 136 RLHCEGCISKIKKIIYKTKGVDNVTIDGGKDLVTVKGT--MDVKELVPYLK 184 (318)
Q Consensus 136 gm~C~~C~~kI~k~l~~~~GV~sv~vd~~~~~v~V~g~--~d~~~l~~~l~ 184 (318)
++.|..|...+...+....++....+++....+.+... .+...+...+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (63)
T cd00371 6 GMTCAGCVSKIEKALEKLPGVESVEVDLETGKATVEYDPEVSPEELLEAIE 56 (63)
T ss_pred CeEcHHHHHHHHHHHhcCCCEeEEEEEccCCEEEEEECCCCCHHHHHHHHH
Confidence 78899999999998888889887777776666555432 24444444443
No 23
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.92 E-value=9.4 Score=37.52 Aligned_cols=12 Identities=8% Similarity=-0.263 Sum_probs=5.2
Q ss_pred CCCCCCCCCCCC
Q 021061 270 VYGQSYPMENQH 281 (318)
Q Consensus 270 ~~~~~y~~y~~~ 281 (318)
.+.+++.+|+++
T Consensus 434 ~~~~p~~~~g~~ 445 (483)
T KOG2236|consen 434 PESNPPANFGQA 445 (483)
T ss_pred CCCCCccccccc
Confidence 334444445433
No 24
>PRK13748 putative mercuric reductase; Provisional
Probab=71.90 E-value=17 Score=36.79 Aligned_cols=64 Identities=20% Similarity=0.321 Sum_probs=48.8
Q ss_pred EEEE-eechhhhHHHHHHHhhcCCCccEEeecCCCCeEEEEe--cCCHHHHHHHHHHhcCCCeEEccC
Q 021061 132 VLKI-RLHCEGCISKIKKIIYKTKGVDNVTIDGGKDLVTVKG--TMDVKELVPYLKEKLKRNVEVVPA 196 (318)
Q Consensus 132 ~l~v-gm~C~~C~~kI~k~l~~~~GV~sv~vd~~~~~v~V~g--~~d~~~l~~~l~~k~g~~a~~v~~ 196 (318)
.+.+ +|+|.+|..+++..+..++++....+++....+.+.. ..+...+...+. ..++.+++...
T Consensus 3 ~i~i~g~~C~~c~~~ie~~l~~~~gv~~a~~~~~~~~~~v~~~~~~~~~~i~~~i~-~~g~~~~~~~~ 69 (561)
T PRK13748 3 TLKITGMTCDSCAAHVKDALEKVPGVQSADVSYPKGSAQLAIEVGTSPDALTAAVA-GLGYRATLADA 69 (561)
T ss_pred EEEECCeecHHHHHHHHHHHhcCCCeeEEEEEcCCCEEEEEECCCCCHHHHHHHHH-HcCCeeeccCc
Confidence 4567 9999999999999999999999999999888877663 245566666665 67776655544
No 25
>COG1888 Uncharacterized protein conserved in archaea [Function unknown]
Probab=71.32 E-value=14 Score=28.19 Aligned_cols=48 Identities=25% Similarity=0.453 Sum_probs=33.7
Q ss_pred HHHHhhcCCCccEEee-----cCCCC--eEEEEec-CCHHHHHHHHHHhcCCCeEEc
Q 021061 146 IKKIIYKTKGVDNVTI-----DGGKD--LVTVKGT-MDVKELVPYLKEKLKRNVEVV 194 (318)
Q Consensus 146 I~k~l~~~~GV~sv~v-----d~~~~--~v~V~g~-~d~~~l~~~l~~k~g~~a~~v 194 (318)
+-+.|+++.||.-|.+ |..+. ++||.|+ +|-++|.+.|. .+|..++.+
T Consensus 24 ~A~~lskl~gVegVNItv~eiD~et~~~~itIeG~~ldydei~~~iE-~~Gg~IHSi 79 (97)
T COG1888 24 LALELSKLEGVEGVNITVTEIDVETENLKITIEGTNLDYDEIEEVIE-ELGGAIHSI 79 (97)
T ss_pred HHHHHhhcCCcceEEEEEEEeeehhcceEEEEEcCCCCHHHHHHHHH-HcCCeeeeh
Confidence 4456778888765543 33343 3445565 99999999999 888888765
No 26
>TIGR02052 MerP mercuric transport protein periplasmic component. This model represents the periplasmic mercury (II) binding protein of the bacterial mercury detoxification system which passes mercuric ion to the MerT transporter for subsequent reduction to Hg(0) by the mercuric reductase MerA. MerP contains a distinctive GMTCXXC motif associated with metal binding. MerP is related to a larger family of metal binding proteins (pfam00403).
Probab=70.79 E-value=21 Score=25.46 Aligned_cols=42 Identities=26% Similarity=0.506 Sum_probs=34.8
Q ss_pred EEEEEEE-eeCHHHHHHHHHHHhcCCCeeEEEEecCCCEEEEe
Q 021061 28 TVVLKVD-LHCEGCAKKIKRAMKNYEGVVDVKTDCGANKVTVT 69 (318)
Q Consensus 28 ~v~lkV~-m~C~~Ca~kIe~~L~~l~GV~~v~v~~~~~~v~V~ 69 (318)
++.+.+. ++|..|...++..+....++....+++....+.+.
T Consensus 24 ~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (92)
T TIGR02052 24 TVTLEVPGMTCVACPITVETALQKVDGVSKAEVTFKTKLAVVT 66 (92)
T ss_pred EEEEEECCeEcHHHHHHHHHHHhcCCCEEEEEEEecCCEEEEE
Confidence 4557788 99999999999999999998888888777776554
No 27
>PF02680 DUF211: Uncharacterized ArCR, COG1888; InterPro: IPR003831 This entry describes proteins of unknown function.; PDB: 3BPD_I 2RAQ_F 2X3D_E.
Probab=63.99 E-value=19 Score=27.70 Aligned_cols=63 Identities=24% Similarity=0.442 Sum_probs=39.3
Q ss_pred eEEEEE-eechhhhHHHHHHHhhcCCCccEEee-----cCCCCeEEE--Eec-CCHHHHHHHHHHhcCCCeEEc
Q 021061 130 TVVLKI-RLHCEGCISKIKKIIYKTKGVDNVTI-----DGGKDLVTV--KGT-MDVKELVPYLKEKLKRNVEVV 194 (318)
Q Consensus 130 ~~~l~v-gm~C~~C~~kI~k~l~~~~GV~sv~v-----d~~~~~v~V--~g~-~d~~~l~~~l~~k~g~~a~~v 194 (318)
+++|.| --+-.+ .-.+-+.|..+.||..+++ |..+..+.| .|. +|.+.|.+.|. .+|..++.+
T Consensus 6 RlVLDVlKP~~p~-i~e~A~~l~~~~gV~gVnitv~EvD~ete~lkitiEG~~id~d~i~~~Ie-~~Gg~IHSI 77 (95)
T PF02680_consen 6 RLVLDVLKPHEPS-IVELAKALSELEGVDGVNITVVEVDVETENLKITIEGDDIDFDEIKEAIE-ELGGVIHSI 77 (95)
T ss_dssp EEEEEEEEESSS--HHHHHHHHHTSTTEEEEEEEEEEE-SSEEEEEEEEEESSE-HHHHHHHHH-HTT-EEEEE
T ss_pred EEEEEeecCCCCC-HHHHHHHHHhCCCcceEEEEEEEeeccccEEEEEEEeCCCCHHHHHHHHH-HcCCeEEee
Confidence 455555 223332 3445677889999877664 334444444 476 99999999999 888877654
No 28
>cd00371 HMA Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain contains two cysteine residues that are important in binding and transfer of metal ions, such as copper, cadmium, cobalt and zinc. In the case of copper, stoichiometry of binding is one Cu+ ion per binding domain. Repeats of the HMA domain in copper chaperone has been associated with Menkes/Wilson disease due to binding of multiple copper ions.
Probab=60.17 E-value=32 Score=19.94 Aligned_cols=37 Identities=38% Similarity=0.738 Sum_probs=29.5
Q ss_pred EE-eeCHHHHHHHHHHHhcCCCeeEEEEecCCCEEEEe
Q 021061 33 VD-LHCEGCAKKIKRAMKNYEGVVDVKTDCGANKVTVT 69 (318)
Q Consensus 33 V~-m~C~~Ca~kIe~~L~~l~GV~~v~v~~~~~~v~V~ 69 (318)
+. +.|..|...+...+....++.....++......+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 41 (63)
T cd00371 4 VEGMTCAGCVSKIEKALEKLPGVESVEVDLETGKATVE 41 (63)
T ss_pred ECCeEcHHHHHHHHHHHhcCCCEeEEEEEccCCEEEEE
Confidence 55 88999999999999888888777777766665554
No 29
>COG1888 Uncharacterized protein conserved in archaea [Function unknown]
Probab=58.00 E-value=75 Score=24.29 Aligned_cols=62 Identities=23% Similarity=0.315 Sum_probs=38.1
Q ss_pred CceEEEEEEE-eeCHHHHHHHHHHHhcCCCeeEEEEe-----cC--CCEEEEec-cCCHHHHHHHHHhccc
Q 021061 25 GVVTVVLKVD-LHCEGCAKKIKRAMKNYEGVVDVKTD-----CG--ANKVTVTG-KVEPAKLKERLEAKTK 86 (318)
Q Consensus 25 ~~~~v~lkV~-m~C~~Ca~kIe~~L~~l~GV~~v~v~-----~~--~~~v~V~~-~~~~~~i~~~i~~~~~ 86 (318)
...+++|-+. -+-.--.--+-..|++++||..|.+. .. +-+++|.+ +.+..+|.+.|++.++
T Consensus 4 ~iRRlVLDvlKP~~~p~ive~A~~lskl~gVegVNItv~eiD~et~~~~itIeG~~ldydei~~~iE~~Gg 74 (97)
T COG1888 4 GIRRLVLDVLKPHRGPTIVELALELSKLEGVEGVNITVTEIDVETENLKITIEGTNLDYDEIEEVIEELGG 74 (97)
T ss_pred cceeeeeeecCCcCCCcHHHHHHHHhhcCCcceEEEEEEEeeehhcceEEEEEcCCCCHHHHHHHHHHcCC
Confidence 3455566555 33233334455678888887765544 22 33445555 6899999999996655
No 30
>PF01883 DUF59: Domain of unknown function DUF59; InterPro: IPR002744 This family includes prokaryotic proteins of unknown function. The family also includes PhaH (O84984 from SWISSPROT) from Pseudomonas putida. PhaH forms a complex with PhaF (O84982 from SWISSPROT), PhaG (O84983 from SWISSPROT) and PhaI (O84985 from SWISSPROT), which hydroxylates phenylacetic acid to 2-hydroxyphenylacetic acid []. So members of this family may all be components of ring hydroxylating complexes.; PDB: 3LNO_C 3CQ3_A 3CQ2_D 2CU6_B 3CQ1_A 3UX3_B 3UX2_A 1WCJ_A 1UWD_A.
Probab=57.95 E-value=17 Score=25.96 Aligned_cols=32 Identities=31% Similarity=0.580 Sum_probs=22.3
Q ss_pred EEEEEEEeeCHHHH------HHHHHHHhcCCCeeEEEE
Q 021061 28 TVVLKVDLHCEGCA------KKIKRAMKNYEGVVDVKT 59 (318)
Q Consensus 28 ~v~lkV~m~C~~Ca------~kIe~~L~~l~GV~~v~v 59 (318)
++.|.+.+..++|. ..|+.+|+.++||.++.|
T Consensus 35 ~V~v~l~l~~~~~~~~~~l~~~i~~~l~~l~gv~~V~V 72 (72)
T PF01883_consen 35 KVSVSLELPTPACPAAEPLREEIREALKALPGVKSVKV 72 (72)
T ss_dssp EEEEEE--SSTTHTTHHHHHHHHHHHHHTSTT-SEEEE
T ss_pred EEEEEEEECCCCchHHHHHHHHHHHHHHhCCCCceEeC
Confidence 45666677777776 668888999999988865
No 31
>COG2177 FtsX Cell division protein [Cell division and chromosome partitioning]
Probab=55.92 E-value=94 Score=29.09 Aligned_cols=89 Identities=17% Similarity=0.212 Sum_probs=56.1
Q ss_pred EEEEEEeeCHHHHHHHHHHHhcCCCeeEEEEecCCCEEEEeccCCHHHHHHHHHhcccCc-ccccCCCCCCCCCCCCCcc
Q 021061 29 VVLKVDLHCEGCAKKIKRAMKNYEGVVDVKTDCGANKVTVTGKVEPAKLKERLEAKTKKK-VDLVSPQPKKDAGGGEKKS 107 (318)
Q Consensus 29 v~lkV~m~C~~Ca~kIe~~L~~l~GV~~v~v~~~~~~v~V~~~~~~~~i~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~ 107 (318)
+.+.++.+ ..|...++..|..++||.++++ .+.++-.+.++...+.. ....+
T Consensus 63 vyL~~~~~-~~~~~~v~~~i~~~~gV~~v~~------------~sre~~l~~L~~~lg~~~~~~l~-------------- 115 (297)
T COG2177 63 VYLQIDAD-QDDAALVREKIEGIPGVKSVRF------------ISREEALKELQPWLGFGALLMLD-------------- 115 (297)
T ss_pred EEEecCCC-hHHHHHHHHHHhcCCCcceEEE------------eCHHHHHHHHHHHcCchhhhcCC--------------
Confidence 34444444 8899999999999999998866 34455555555444321 00011
Q ss_pred cccccCCCCCCCcccCCCCCcceEEEEEeechhhhHHHHHHHhhcCCCccEEeec
Q 021061 108 EEKSEKKPDDKKSEEKKPPKESTVVLKIRLHCEGCISKIKKIIYKTKGVDNVTID 162 (318)
Q Consensus 108 ~~~~~~k~~~~~~~~~~~~~~~~~~l~vgm~C~~C~~kI~k~l~~~~GV~sv~vd 162 (318)
..|-...+++++ +-+.-...+.+.|..++||.+|..+
T Consensus 116 ----------------~nPLP~~~vV~~--~~p~~~~~i~~~l~~l~gV~~V~~~ 152 (297)
T COG2177 116 ----------------ENPLPDVFVVTP--DDPPQVKAIAAALRDLPGVAEVDDD 152 (297)
T ss_pred ----------------CCCCCceEEEEe--CCCccHHHHHHHHHcCccceehhcc
Confidence 112233445555 2266678889999999999988755
No 32
>PF02162 XYPPX: XYPPX repeat (two copies); InterPro: IPR006031 This repeat is found in a wide variety of proteins and generally consists of the motif XYPPX where X can be any amino acid. The family includes annexin VII ANX7_DICDI, the carboxy tail of certain rhodopsins OPSD_LOLSU. This family also includes plaque matrix proteins, however this motif is embedded in a ten residue repeat in FP1_MYTED. The molecular function of this repeat is unknown. It is also not clear is all the members of this family share a common evolutionary ancestor due to its short length and biased amino acid composition.
Probab=54.34 E-value=12 Score=18.59 Aligned_cols=6 Identities=83% Similarity=1.597 Sum_probs=2.3
Q ss_pred CCCCCC
Q 021061 289 GYPPQM 294 (318)
Q Consensus 289 ~~~~~p 294 (318)
+|+++.
T Consensus 6 G~pPQ~ 11 (15)
T PF02162_consen 6 GYPPQG 11 (15)
T ss_pred CCCCCC
Confidence 334333
No 33
>PF01883 DUF59: Domain of unknown function DUF59; InterPro: IPR002744 This family includes prokaryotic proteins of unknown function. The family also includes PhaH (O84984 from SWISSPROT) from Pseudomonas putida. PhaH forms a complex with PhaF (O84982 from SWISSPROT), PhaG (O84983 from SWISSPROT) and PhaI (O84985 from SWISSPROT), which hydroxylates phenylacetic acid to 2-hydroxyphenylacetic acid []. So members of this family may all be components of ring hydroxylating complexes.; PDB: 3LNO_C 3CQ3_A 3CQ2_D 2CU6_B 3CQ1_A 3UX3_B 3UX2_A 1WCJ_A 1UWD_A.
Probab=51.16 E-value=23 Score=25.20 Aligned_cols=33 Identities=21% Similarity=0.450 Sum_probs=20.9
Q ss_pred ceEEEEEeechhhh------HHHHHHHhhcCCCccEEee
Q 021061 129 STVVLKIRLHCEGC------ISKIKKIIYKTKGVDNVTI 161 (318)
Q Consensus 129 ~~~~l~vgm~C~~C------~~kI~k~l~~~~GV~sv~v 161 (318)
.++.+.+.+...+| ...|+.+|..++||.+|+|
T Consensus 34 ~~V~v~l~l~~~~~~~~~~l~~~i~~~l~~l~gv~~V~V 72 (72)
T PF01883_consen 34 GKVSVSLELPTPACPAAEPLREEIREALKALPGVKSVKV 72 (72)
T ss_dssp CEEEEEE--SSTTHTTHHHHHHHHHHHHHTSTT-SEEEE
T ss_pred CEEEEEEEECCCCchHHHHHHHHHHHHHHhCCCCceEeC
Confidence 35555554444443 4778889999999998875
No 34
>PRK13748 putative mercuric reductase; Provisional
Probab=43.78 E-value=57 Score=32.95 Aligned_cols=40 Identities=23% Similarity=0.532 Sum_probs=34.6
Q ss_pred EEEEE-eeCHHHHHHHHHHHhcCCCeeEEEEecCCCEEEEe
Q 021061 30 VLKVD-LHCEGCAKKIKRAMKNYEGVVDVKTDCGANKVTVT 69 (318)
Q Consensus 30 ~lkV~-m~C~~Ca~kIe~~L~~l~GV~~v~v~~~~~~v~V~ 69 (318)
.+.+. |+|.+|...++..+..++++....+++....+.+.
T Consensus 3 ~i~i~g~~C~~c~~~ie~~l~~~~gv~~a~~~~~~~~~~v~ 43 (561)
T PRK13748 3 TLKITGMTCDSCAAHVKDALEKVPGVQSADVSYPKGSAQLA 43 (561)
T ss_pred EEEECCeecHHHHHHHHHHHhcCCCeeEEEEEcCCCEEEEE
Confidence 36678 99999999999999999998888888888876665
No 35
>PF02680 DUF211: Uncharacterized ArCR, COG1888; InterPro: IPR003831 This entry describes proteins of unknown function.; PDB: 3BPD_I 2RAQ_F 2X3D_E.
Probab=42.56 E-value=1.6e+02 Score=22.76 Aligned_cols=61 Identities=23% Similarity=0.377 Sum_probs=38.8
Q ss_pred CceEEEEEEE-eeCHHHHHHHHHHHhcCCCeeEEEEe-----cCCCEEE--Eec-cCCHHHHHHHHHhccc
Q 021061 25 GVVTVVLKVD-LHCEGCAKKIKRAMKNYEGVVDVKTD-----CGANKVT--VTG-KVEPAKLKERLEAKTK 86 (318)
Q Consensus 25 ~~~~v~lkV~-m~C~~Ca~kIe~~L~~l~GV~~v~v~-----~~~~~v~--V~~-~~~~~~i~~~i~~~~~ 86 (318)
...+++|-|- -|=. -.-.+-..|..++||..+.+. ..+..+. |.| ..+...|.++|+..++
T Consensus 3 ~irRlVLDVlKP~~p-~i~e~A~~l~~~~gV~gVnitv~EvD~ete~lkitiEG~~id~d~i~~~Ie~~Gg 72 (95)
T PF02680_consen 3 GIRRLVLDVLKPHEP-SIVELAKALSELEGVDGVNITVVEVDVETENLKITIEGDDIDFDEIKEAIEELGG 72 (95)
T ss_dssp SEEEEEEEEEEESSS--HHHHHHHHHTSTTEEEEEEEEEEE-SSEEEEEEEEEESSE-HHHHHHHHHHTT-
T ss_pred ceeEEEEEeecCCCC-CHHHHHHHHHhCCCcceEEEEEEEeeccccEEEEEEEeCCCCHHHHHHHHHHcCC
Confidence 3456677666 4333 344667889999999877655 3334433 345 5899999999996554
No 36
>COG0841 AcrB Cation/multidrug efflux pump [Defense mechanisms]
Probab=42.06 E-value=3.8e+02 Score=29.72 Aligned_cols=123 Identities=10% Similarity=0.224 Sum_probs=68.9
Q ss_pred HHHHHHHHHhcCCCeeEEEEecCCCEEEEe--c--cCCHH----HHHHHHHhcccCcccccCCCCCCCCCCCCCcccccc
Q 021061 40 CAKKIKRAMKNYEGVVDVKTDCGANKVTVT--G--KVEPA----KLKERLEAKTKKKVDLVSPQPKKDAGGGEKKSEEKS 111 (318)
Q Consensus 40 Ca~kIe~~L~~l~GV~~v~v~~~~~~v~V~--~--~~~~~----~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (318)
-...||+.|+.++|+..++-....+..+|+ . ..|++ ++.++|..... .++... ......+.
T Consensus 62 Vt~piE~~l~~i~gi~~i~S~S~~G~s~itv~F~~~~d~d~A~~~V~~kv~~~~~----~LP~~~---~~p~v~~~---- 130 (1009)
T COG0841 62 VTQPIEQQLNGLDGLDYMSSTSSSGSSSITVTFELGTDPDTAAVQVQNKIQQAES----RLPSGV---QQPGVTVE---- 130 (1009)
T ss_pred HhHHHHHHHhcCCCccEEEEEEcCCcEEEEEEEeCCCChHHHHHHHHHHHHHHHh----cCCCcc---CCCceEec----
Confidence 346799999999999877666555655554 2 34444 45555542211 111110 00000000
Q ss_pred cCCCCCCCcccCCCCCcceEEEEE-e--ec----hhhhHHHHHHHhhcCCCccEEeecCC-CCeEEEE--------ecCC
Q 021061 112 EKKPDDKKSEEKKPPKESTVVLKI-R--LH----CEGCISKIKKIIYKTKGVDNVTIDGG-KDLVTVK--------GTMD 175 (318)
Q Consensus 112 ~~k~~~~~~~~~~~~~~~~~~l~v-g--m~----C~~C~~kI~k~l~~~~GV~sv~vd~~-~~~v~V~--------g~~d 175 (318)
+....-.+.+.+ . +. -..-...|+..|.+++||.++++-.. ...++|. -.++
T Consensus 131 ------------~~~~~~i~~~al~s~~~~~~~l~~~~~~~l~~~L~~v~GV~~V~~~G~~~~~~rI~ldp~kLa~~gLt 198 (1009)
T COG0841 131 ------------KSSSNPLLILALTSTTDSSSDLTDYAASNVRDELSRVPGVGSVQLFGAQEYAMRIWLDPAKLAAYGLT 198 (1009)
T ss_pred ------------cCCCceEEEEEEEcCCCChHHHHHHHHHHHHHHHhcCCCceEEEEcCCCceeEEEEeCHHHHHHcCCC
Confidence 001112333444 2 32 12345668899999999999999886 4555664 2377
Q ss_pred HHHHHHHHHH
Q 021061 176 VKELVPYLKE 185 (318)
Q Consensus 176 ~~~l~~~l~~ 185 (318)
+.+|...|+.
T Consensus 199 ~~dV~~ai~~ 208 (1009)
T COG0841 199 PSDVQSAIRA 208 (1009)
T ss_pred HHHHHHHHHH
Confidence 8889999983
No 37
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=40.08 E-value=64 Score=34.21 Aligned_cols=9 Identities=33% Similarity=0.641 Sum_probs=3.5
Q ss_pred CHHHHHHHH
Q 021061 175 DVKELVPYL 183 (318)
Q Consensus 175 d~~~l~~~l 183 (318)
|...|++.+
T Consensus 455 d~~~liD~~ 463 (1102)
T KOG1924|consen 455 DLTELIDKM 463 (1102)
T ss_pred cHHHHHHHH
Confidence 333444333
No 38
>PRK10553 assembly protein for periplasmic nitrate reductase; Provisional
Probab=38.14 E-value=1.2e+02 Score=22.98 Aligned_cols=43 Identities=19% Similarity=0.202 Sum_probs=31.3
Q ss_pred hHHHHHHHhhcCCCccEEeecCCCCeEEEE-ecCCHHHHHHHHH
Q 021061 142 CISKIKKIIYKTKGVDNVTIDGGKDLVTVK-GTMDVKELVPYLK 184 (318)
Q Consensus 142 C~~kI~k~l~~~~GV~sv~vd~~~~~v~V~-g~~d~~~l~~~l~ 184 (318)
-...+.+.|..++|++-...|...+++.|+ -.-+...+++.|.
T Consensus 18 ~~~~V~~~l~~ipg~Evh~~d~~~GKiVVtiE~~~~~~~~~~i~ 61 (87)
T PRK10553 18 RISDISTQLNAFPGCEVAVSDAPSGQLIVVVEAEDSETLLQTIE 61 (87)
T ss_pred HHHHHHHHHHcCCCcEEEeecCCCCeEEEEEEeCChHHHHHHHH
Confidence 367788899999999888777777888876 3345555555554
No 39
>PF06495 Transformer: Fruit fly transformer protein; InterPro: IPR010519 This family consists of transformer proteins from several Drosophila species and also from Ceratitis capitata (Mediterranean fruit fly). The transformer locus (tra) produces an RNA processing protein that alternatively splices the doublesex pre-mRNA in the sex determination hierarchy of Drosophila melanogaster [].; GO: 0006397 mRNA processing, 0046660 female sex differentiation, 0005634 nucleus
Probab=36.66 E-value=62 Score=27.73 Aligned_cols=11 Identities=9% Similarity=0.015 Sum_probs=6.1
Q ss_pred CCCCCCCCCCC
Q 021061 277 MENQHQVVYAN 287 (318)
Q Consensus 277 ~y~~~gy~~~~ 287 (318)
+|+..+|...+
T Consensus 142 m~~~~~y~~~~ 152 (182)
T PF06495_consen 142 MQGAYPYQMPP 152 (182)
T ss_pred cccccccccCC
Confidence 45555666554
No 40
>PF03927 NapD: NapD protein; InterPro: IPR005623 This entry represents NapD, the twin-arginine signal-peptide-binding chaperone for NapA, functioning as an assembly protein for the periplasmic nitrate reductase NapABC. The periplasmic NapABC enzyme likely functions during growth in nitrate-limited environments [].; PDB: 2JSX_A 2PQ4_A.
Probab=35.11 E-value=1.5e+02 Score=21.74 Aligned_cols=41 Identities=15% Similarity=0.265 Sum_probs=30.2
Q ss_pred HHHHHHHhhcCCCccEEeecCCCCeEEEE-ecCCHHHHHHHHH
Q 021061 143 ISKIKKIIYKTKGVDNVTIDGGKDLVTVK-GTMDVKELVPYLK 184 (318)
Q Consensus 143 ~~kI~k~l~~~~GV~sv~vd~~~~~v~V~-g~~d~~~l~~~l~ 184 (318)
...+.+.|..++|++-...+.. +++.|+ -..+...+.+.|.
T Consensus 17 ~~~v~~~l~~~~gvEVh~~~~~-GKiVVtiE~~~~~~~~~~~~ 58 (79)
T PF03927_consen 17 LEEVAEALAAIPGVEVHAVDED-GKIVVTIEAESSEEEVDLID 58 (79)
T ss_dssp HHHHHHHHCCSTTEEEEEEETT-TEEEEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcEEEeeCCC-CeEEEEEEeCChHHHHHHHH
Confidence 5678889999999977677766 777765 4566666666666
No 41
>PF01206 TusA: Sulfurtransferase TusA; InterPro: IPR001455 SirA functions as a response regulator as part of a two-component system, where BarA is the sensor kinase. This system increases the expression of virulence genes and decreases the expression of motility genes []. BarA phosphorylates SirA, thereby activating the protein. Phosphorylated SirA directly activates virulence expression by interacting with hilA and hilC promoters, while repressing the flagellar regulon indirectly by binding to the csrB promoter, which in turn affects flagellar gene expression. Orthologues of SirA from Salmonella spp. can be found throughout proteobacteria, such as GacA in Psuedomonas spp., VarA in Vibrio cholerae, ExpA in Erwinia carotovora, LetA in Legionella pneumophila, and UvrY in Escherichia coli []. A sensor kinase for SirA is present in each of these organisms as well; the sensor kinase is known as BarA in E. coli and Salmonella spp., but has different names in other genera. In different species, SirA/BarA orthologues are required for virulence gene expression, exoenzyme and antibiotic production, motility, and biofilm formation. The structure of SirA consists of an alpha/beta sandwich with a beta-alpha-beta-alpha-beta(2) fold, comprising a mixed four-stranded beta-sheet stacked against two alpha-helices, both of which are nearly parallel to the strands of the beta-sheet []. Several uncharacterised bacterial proteins (73 to 81 amino-acid residues in length) that contain a well-conserved region in their N-terminal region show structural similarity to the SirA protein, including the E. coli protein YedF (P0AA31 from SWISSPROT), and other members of the UPF0033 family.; GO: 0016783 sulfurtransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3LVJ_D 3LVK_B 1DCJ_A 3HZ7_A 1JDQ_A 1JE3_A 1PAV_A.
Probab=34.30 E-value=1e+02 Score=21.52 Aligned_cols=53 Identities=19% Similarity=0.217 Sum_probs=35.8
Q ss_pred EEEE-eechhhhHHHHHHHhhcCCCccEEeecCCCCeEEEEe--cCCHHHHHHHHHHhcCCCeEEc
Q 021061 132 VLKI-RLHCEGCISKIKKIIYKTKGVDNVTIDGGKDLVTVKG--TMDVKELVPYLKEKLKRNVEVV 194 (318)
Q Consensus 132 ~l~v-gm~C~~C~~kI~k~l~~~~GV~sv~vd~~~~~v~V~g--~~d~~~l~~~l~~k~g~~a~~v 194 (318)
+|.+ |+.|+...-++.++|..++. ++.+.|.. .....+|...++ ..|+.+..+
T Consensus 2 ~lD~rg~~CP~Pll~~~~~l~~l~~---------G~~l~v~~d~~~~~~di~~~~~-~~g~~~~~~ 57 (70)
T PF01206_consen 2 TLDLRGLSCPMPLLKAKKALKELPP---------GEVLEVLVDDPAAVEDIPRWCE-ENGYEVVEV 57 (70)
T ss_dssp EEECSS-STTHHHHHHHHHHHTSGT---------T-EEEEEESSTTHHHHHHHHHH-HHTEEEEEE
T ss_pred EEeCCCCCCCHHHHHHHHHHHhcCC---------CCEEEEEECCccHHHHHHHHHH-HCCCEEEEE
Confidence 4667 99999999999999998742 23444442 244577888887 888864433
No 42
>PRK06418 transcription elongation factor NusA-like protein; Validated
Probab=33.14 E-value=1.4e+02 Score=25.46 Aligned_cols=68 Identities=28% Similarity=0.403 Sum_probs=42.5
Q ss_pred EEEEEeechhhhHHHHHH------------HhhcC------CCccEEeecCCCCeEEE-E--ec---C-CHHHHHHHHHH
Q 021061 131 VVLKIRLHCEGCISKIKK------------IIYKT------KGVDNVTIDGGKDLVTV-K--GT---M-DVKELVPYLKE 185 (318)
Q Consensus 131 ~~l~vgm~C~~C~~kI~k------------~l~~~------~GV~sv~vd~~~~~v~V-~--g~---~-d~~~l~~~l~~ 185 (318)
+-++-|+-|.+|.+++.. +|.+| .++.-...-...+++++ . |. + -.-..+++|++
T Consensus 8 ~c~kt~ilC~~c~~~~~~G~v~~~dv~i~~~l~~l~~~~~l~~~~~~k~~~~ddrvIfvV~~gdg~aIGk~G~~ik~l~~ 87 (166)
T PRK06418 8 VCVKTGLLCPRCQSLLDSGEVTELDVEVSKVLLKLEEDKELKDVEYKKAYEVDDLVILLVTSGPRIPIGKGGKIAKALSR 87 (166)
T ss_pred EEeccCccChhHHhHhhcCceEEeehHHHHHHHHhhccccccCceEEEEEEeCCEEEEEEeCCCcccccccchHHHHHHH
Confidence 444558999999998754 56665 33332222223466664 3 33 1 11267889999
Q ss_pred hcCCCeEEccCCC
Q 021061 186 KLKRNVEVVPAKK 198 (318)
Q Consensus 186 k~g~~a~~v~~~~ 198 (318)
.+|+.++++....
T Consensus 88 ~lgk~VevVE~s~ 100 (166)
T PRK06418 88 KLGKKVRVVEKTN 100 (166)
T ss_pred HhCCcEEEEEcCC
Confidence 9999999997543
No 43
>TIGR03406 FeS_long_SufT probable FeS assembly SUF system protein SufT. The function is unknown for this protein family, but members are found almost always in operons for the the SUF system of iron-sulfur cluster biosynthesis. The SUF system is present elsewhere on the chromosome for those few species where SUF genes are not adjacent. This family shares this property of association with the SUF system with a related family, TIGR02945. TIGR02945 consists largely of a DUF59 domain (see Pfam family pfam01883), while this protein is about double the length, with a unique N-terminal domain and DUF59 C-terminal domain. A location immediately downstream of the cysteine desulfurase gene sufS in many contexts suggests the gene symbol sufT. Note that some other homologs of this family and of TIGR02945, but no actual members of this family, are found in operons associated with phenylacetic acid (or other ring-hydroxylating) degradation pathways.
Probab=33.02 E-value=56 Score=28.08 Aligned_cols=34 Identities=18% Similarity=0.398 Sum_probs=25.1
Q ss_pred EEEEEEEeeCHHHH------HHHHHHHhcCCCeeEEEEec
Q 021061 28 TVVLKVDLHCEGCA------KKIKRAMKNYEGVVDVKTDC 61 (318)
Q Consensus 28 ~v~lkV~m~C~~Ca------~kIe~~L~~l~GV~~v~v~~ 61 (318)
++.+.|.++..+|. ..|+.+|..++||.++.|++
T Consensus 114 ~V~I~mtLt~p~c~~~~~L~~dV~~aL~~l~gV~~V~V~l 153 (174)
T TIGR03406 114 RVDIEMTLTAPGCGMGPVLVEDVEDKVLAVPNVDEVEVEL 153 (174)
T ss_pred EEEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCceeEEEEE
Confidence 35566667766665 44888899999999888764
No 44
>PRK14054 methionine sulfoxide reductase A; Provisional
Probab=31.39 E-value=79 Score=27.11 Aligned_cols=44 Identities=18% Similarity=0.311 Sum_probs=31.8
Q ss_pred hhHHHHHHHhhcCCCccEEeecCCCCe-------------------EEEE---ecCCHHHHHHHHH
Q 021061 141 GCISKIKKIIYKTKGVDNVTIDGGKDL-------------------VTVK---GTMDVKELVPYLK 184 (318)
Q Consensus 141 ~C~~kI~k~l~~~~GV~sv~vd~~~~~-------------------v~V~---g~~d~~~l~~~l~ 184 (318)
+|-.-++..+.+++||.++.+-.+++. |.|+ ..++-++|+....
T Consensus 11 GCFWg~E~~f~~~~GV~~t~vGYagG~~~~PtY~~Vcsg~tgh~E~V~V~yDp~~isy~~Ll~~f~ 76 (172)
T PRK14054 11 GCFWGMEAPFDRVKGVISTRVGYTGGHVENPTYEQVCSGTTGHAEAVEITYDPAVISYRELLELFF 76 (172)
T ss_pred CChhhhHHHHccCCCEEEEEeeecCCCCCCCChhhcccCCCCCeEEEEEEECCCcCCHHHHHHHHH
Confidence 566667777889999999998876664 3444 2366677877766
No 45
>TIGR02945 SUF_assoc FeS assembly SUF system protein. Members of this family belong to the broader Pfam family pfam01883, or Domain of Unknown Function DUF59. Many members of DUF59 are candidate ring hydroxylating complex subunits. However, members of the narrower family defined here all are found in genomes that carry the FeS assembly SUF system. For 70 % of these species, the member of this protein family is found as part of the SUF locus, usually immediately downstream of the sufS gene.
Probab=29.35 E-value=1.3e+02 Score=22.65 Aligned_cols=40 Identities=13% Similarity=0.150 Sum_probs=25.6
Q ss_pred HHHHHHhhcCCCccEEeecCCCCeEEEEecCCHHHHHHHHHHhcC
Q 021061 144 SKIKKIIYKTKGVDNVTIDGGKDLVTVKGTMDVKELVPYLKEKLK 188 (318)
Q Consensus 144 ~kI~k~l~~~~GV~sv~vd~~~~~v~V~g~~d~~~l~~~l~~k~g 188 (318)
..|+.+|..++|+.++.+++. ..-.-.++.+.+.-|++++
T Consensus 58 ~~i~~al~~l~gv~~v~v~i~-----~~~~~~~~~~~~~~~~~~~ 97 (99)
T TIGR02945 58 GEVENAVRAVPGVGSVTVELV-----WDPPWTPERMSEEARLELG 97 (99)
T ss_pred HHHHHHHHhCCCCceEEEEEE-----eeCCCChHHCCHHHHHHcC
Confidence 457888999999998887742 2223344555555555554
No 46
>PRK11023 outer membrane lipoprotein; Provisional
Probab=27.61 E-value=4e+02 Score=22.96 Aligned_cols=110 Identities=18% Similarity=0.202 Sum_probs=65.1
Q ss_pred eeCHHHHHHHHHHHhcCCCee---EEEEecCCCEEEEeccCCHHHHHHHHHhcccCcccccCCCCCCCCCCCCCcccccc
Q 021061 35 LHCEGCAKKIKRAMKNYEGVV---DVKTDCGANKVTVTGKVEPAKLKERLEAKTKKKVDLVSPQPKKDAGGGEKKSEEKS 111 (318)
Q Consensus 35 m~C~~Ca~kIe~~L~~l~GV~---~v~v~~~~~~v~V~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (318)
+....=..+|..+|..-+.+. .+.|....+.++++|.++............. .+.-+.
T Consensus 45 ~dD~~i~~~V~~aL~~~~~l~~~~~I~V~v~~G~V~L~G~V~~~~~k~~A~~ia~-~v~GV~------------------ 105 (191)
T PRK11023 45 VDDGTLELRVNNALSKDEQIKKEARINVTAYQGKVLLTGQSPNAELSERAKQIAM-GVEGVN------------------ 105 (191)
T ss_pred ehhHHHHHHHHHHHhhCcccCcCceEEEEEECCEEEEEEEeCCHHHHHHHHHHHh-cCCCce------------------
Confidence 445556678888887766553 5777888999999987655544443331111 110000
Q ss_pred cCCCCCCCcccCCCCCcceEEEEE--------eechhhhHHHHHHHhhcCCCcc--EEeecCCCCeEEEEecCCHHHH
Q 021061 112 EKKPDDKKSEEKKPPKESTVVLKI--------RLHCEGCISKIKKIIYKTKGVD--NVTIDGGKDLVTVKGTMDVKEL 179 (318)
Q Consensus 112 ~~k~~~~~~~~~~~~~~~~~~l~v--------gm~C~~C~~kI~k~l~~~~GV~--sv~vd~~~~~v~V~g~~d~~~l 179 (318)
...-.|.| .++...=..+|+.+|...+.+. ++.|.-.++.|++.|.++..+.
T Consensus 106 ----------------~V~N~l~V~~~~~~~~~~~D~~It~kik~~L~~~~~v~~~~I~V~t~~G~V~L~G~v~~~e~ 167 (191)
T PRK11023 106 ----------------EVYNEIRQGQPIGLGTASKDTWITTKVRSQLLTSDSVKSSNVKVTTENGEVFLLGLVTQREA 167 (191)
T ss_pred ----------------eecceeeeccccccccccCcHHHHHHHHHHHhcCCCCCcceEEEEEECcEEEEEEEeCHHHH
Confidence 00001111 1233445778888888887776 4445556899999998876544
No 47
>PF08712 Nfu_N: Scaffold protein Nfu/NifU N terminal; InterPro: IPR014824 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This domain is found at the N terminus of NifU (from NIF system) and NifU related proteins, and in the human Nfu protein. Both of these proteins are thought to be involved in the assembly of iron-sulphur clusters, functioning as scaffolds [, ]. ; GO: 0005506 iron ion binding; PDB: 2FFM_A 1PQX_A 2K1H_A.
Probab=26.88 E-value=1.7e+02 Score=21.96 Aligned_cols=41 Identities=29% Similarity=0.507 Sum_probs=29.9
Q ss_pred HHHHHHhhcCCCccEEeecCCCCeEEEE--ecCCHHHHHHHHHHh
Q 021061 144 SKIKKIIYKTKGVDNVTIDGGKDLVTVK--GTMDVKELVPYLKEK 186 (318)
Q Consensus 144 ~kI~k~l~~~~GV~sv~vd~~~~~v~V~--g~~d~~~l~~~l~~k 186 (318)
.-+-+.|-.++||.+|-+. .+-|+|+ ..++.+.|...|+.-
T Consensus 37 spLA~~Lf~i~gV~~Vf~~--~dfItVtK~~~~~W~~l~~~I~~~ 79 (87)
T PF08712_consen 37 SPLAQALFAIPGVKSVFIG--DDFITVTKNPDADWEDLKPEIREV 79 (87)
T ss_dssp -HHHHHHHTSTTEEEEEEE--TTEEEEEE-TTS-HHHHHHHHHHH
T ss_pred CHHHHHhcCCCCEeEEEEE--CCEEEEeeCCCCCHHHHHHHHHHH
Confidence 3445566699999998765 7888887 558889998888743
No 48
>PRK10555 aminoglycoside/multidrug efflux system; Provisional
Probab=25.97 E-value=9.3e+02 Score=26.67 Aligned_cols=43 Identities=16% Similarity=0.269 Sum_probs=33.3
Q ss_pred HHHHHHHhhcCCCccEEeecCCCCeEEEE--------ecCCHHHHHHHHHH
Q 021061 143 ISKIKKIIYKTKGVDNVTIDGGKDLVTVK--------GTMDVKELVPYLKE 185 (318)
Q Consensus 143 ~~kI~k~l~~~~GV~sv~vd~~~~~v~V~--------g~~d~~~l~~~l~~ 185 (318)
...++..|.+++||.++++......+.|. -.++..+|...|+.
T Consensus 159 ~~~l~~~L~~v~GV~~V~~~G~~~ei~V~vD~~kl~~~gls~~~v~~al~~ 209 (1037)
T PRK10555 159 ASNIQDPLSRVNGVGDIDAYGSQYSMRIWLDPAKLNSFQMTTKDVTDAIES 209 (1037)
T ss_pred HHHHHHHhhcCCCeEEEEEcCCceEEEEEECHHHHHHcCCCHHHHHHHHHH
Confidence 46788999999999999998765556664 23677888889884
No 49
>PRK09577 multidrug efflux protein; Reviewed
Probab=25.48 E-value=8.9e+02 Score=26.83 Aligned_cols=43 Identities=9% Similarity=0.218 Sum_probs=33.2
Q ss_pred HHHHHHHhhcCCCccEEeecCCCCeEEEE--------ecCCHHHHHHHHHH
Q 021061 143 ISKIKKIIYKTKGVDNVTIDGGKDLVTVK--------GTMDVKELVPYLKE 185 (318)
Q Consensus 143 ~~kI~k~l~~~~GV~sv~vd~~~~~v~V~--------g~~d~~~l~~~l~~ 185 (318)
...|+..|.+++||.+|.+......+.|. --++..+|.+.|+.
T Consensus 158 ~~~l~~~L~~v~GV~~V~~~G~e~~v~V~vD~~kl~~~Gls~~~V~~~l~~ 208 (1032)
T PRK09577 158 SANVLQALRRVEGVGKVQFWGAEYAMRIWPDPVKLAALGLTASDIASAVRA 208 (1032)
T ss_pred HHHHHHHHhcCCCcEEEEecCCceEEEEEeCHHHHHHcCCCHHHHHHHHHH
Confidence 46789999999999999998755555553 23677888899984
No 50
>PF05663 DUF809: Protein of unknown function (DUF809); InterPro: IPR008527 This family consists of several proteins of unknown function Raphanus sativus (Radish) and Brassica napus (Rape).
Probab=24.76 E-value=1.5e+02 Score=22.95 Aligned_cols=43 Identities=14% Similarity=0.114 Sum_probs=21.8
Q ss_pred hhHHHHHHHhhcCCCccEEeecCCCCeEEEEecCCHHHHHHHHH
Q 021061 141 GCISKIKKIIYKTKGVDNVTIDGGKDLVTVKGTMDVKELVPYLK 184 (318)
Q Consensus 141 ~C~~kI~k~l~~~~GV~sv~vd~~~~~v~V~g~~d~~~l~~~l~ 184 (318)
.|.+.+ +.|.++.=--......-.-++||...+..+++..++.
T Consensus 48 hclrtm-rhleklkipyefqygwlgvkitiksnvpndevtkkvs 90 (138)
T PF05663_consen 48 HCLRTM-RHLEKLKIPYEFQYGWLGVKITIKSNVPNDEVTKKVS 90 (138)
T ss_pred HHHHHH-HHHHhcCCCeeeeecceeEEEEEecCCCchHhhhccC
Confidence 344333 3344443222333334455667777777677766554
No 51
>TIGR03406 FeS_long_SufT probable FeS assembly SUF system protein SufT. The function is unknown for this protein family, but members are found almost always in operons for the the SUF system of iron-sulfur cluster biosynthesis. The SUF system is present elsewhere on the chromosome for those few species where SUF genes are not adjacent. This family shares this property of association with the SUF system with a related family, TIGR02945. TIGR02945 consists largely of a DUF59 domain (see Pfam family pfam01883), while this protein is about double the length, with a unique N-terminal domain and DUF59 C-terminal domain. A location immediately downstream of the cysteine desulfurase gene sufS in many contexts suggests the gene symbol sufT. Note that some other homologs of this family and of TIGR02945, but no actual members of this family, are found in operons associated with phenylacetic acid (or other ring-hydroxylating) degradation pathways.
Probab=24.72 E-value=1.5e+02 Score=25.43 Aligned_cols=53 Identities=17% Similarity=0.271 Sum_probs=31.0
Q ss_pred eEEEEEeechhhhH------HHHHHHhhcCCCccEEeecCCCCeEEEEecCCHHHHHHHHHHhc
Q 021061 130 TVVLKIRLHCEGCI------SKIKKIIYKTKGVDNVTIDGGKDLVTVKGTMDVKELVPYLKEKL 187 (318)
Q Consensus 130 ~~~l~vgm~C~~C~------~kI~k~l~~~~GV~sv~vd~~~~~v~V~g~~d~~~l~~~l~~k~ 187 (318)
.+.+.+.+....|. ..|+.+|..++||.++.|++ +..-.-+++.+.+..|.++
T Consensus 114 ~V~I~mtLt~p~c~~~~~L~~dV~~aL~~l~gV~~V~V~l-----~~dp~W~~~~~s~~ar~~l 172 (174)
T TIGR03406 114 RVDIEMTLTAPGCGMGPVLVEDVEDKVLAVPNVDEVEVEL-----VFDPPWSREMMSEAAKLEL 172 (174)
T ss_pred EEEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCceeEEEEE-----EecCCCChHHCCHHHHHHc
Confidence 45555555544443 45888899999999887763 1112234455555555443
No 52
>PF14437 MafB19-deam: MafB19-like deaminase
Probab=24.59 E-value=1.7e+02 Score=24.43 Aligned_cols=40 Identities=20% Similarity=0.281 Sum_probs=30.4
Q ss_pred eEEEEEEE-eeCHHHHHHHHHHHhcCCCeeEEEEecC-CCEEE
Q 021061 27 VTVVLKVD-LHCEGCAKKIKRAMKNYEGVVDVKTDCG-ANKVT 67 (318)
Q Consensus 27 ~~v~lkV~-m~C~~Ca~kIe~~L~~l~GV~~v~v~~~-~~~v~ 67 (318)
..+++.|+ -.|..|..-|....++ -|+.++.|... ++++.
T Consensus 100 ~~~tm~Vdr~vC~~C~~~i~~~a~~-lGl~~L~I~~~~sG~~~ 141 (146)
T PF14437_consen 100 RSMTMYVDRDVCGYCGGDIPSMAEK-LGLKSLTIHEPDSGKVY 141 (146)
T ss_pred CeEEEEECcccchHHHHHHHHHHHH-cCCCeEEEEecCCCcEE
Confidence 45778899 9999999888777666 67888888766 55443
No 53
>TIGR02945 SUF_assoc FeS assembly SUF system protein. Members of this family belong to the broader Pfam family pfam01883, or Domain of Unknown Function DUF59. Many members of DUF59 are candidate ring hydroxylating complex subunits. However, members of the narrower family defined here all are found in genomes that carry the FeS assembly SUF system. For 70 % of these species, the member of this protein family is found as part of the SUF locus, usually immediately downstream of the sufS gene.
Probab=24.15 E-value=1.1e+02 Score=23.17 Aligned_cols=21 Identities=19% Similarity=0.289 Sum_probs=16.9
Q ss_pred HHHHHHHhcCCCeeEEEEecC
Q 021061 42 KKIKRAMKNYEGVVDVKTDCG 62 (318)
Q Consensus 42 ~kIe~~L~~l~GV~~v~v~~~ 62 (318)
..|+.+|..++|+.++.+++.
T Consensus 58 ~~i~~al~~l~gv~~v~v~i~ 78 (99)
T TIGR02945 58 GEVENAVRAVPGVGSVTVELV 78 (99)
T ss_pred HHHHHHHHhCCCCceEEEEEE
Confidence 447888999999998888764
No 54
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=23.57 E-value=1.7e+02 Score=20.35 Aligned_cols=32 Identities=19% Similarity=0.317 Sum_probs=24.5
Q ss_pred eEEEEEeechhh-hHHHHHHHhhcCCCccEEee
Q 021061 130 TVVLKIRLHCEG-CISKIKKIIYKTKGVDNVTI 161 (318)
Q Consensus 130 ~~~l~vgm~C~~-C~~kI~k~l~~~~GV~sv~v 161 (318)
.+.|.|...-.. -...|.+.|++++||.+|.+
T Consensus 42 ~i~~~v~v~~~~~~l~~l~~~L~~i~~V~~v~~ 74 (76)
T cd04888 42 NVTISIDTSTMNGDIDELLEELREIDGVEKVEL 74 (76)
T ss_pred EEEEEEEcCchHHHHHHHHHHHhcCCCeEEEEE
Confidence 455555555554 88899999999999998864
No 55
>PRK10503 multidrug efflux system subunit MdtB; Provisional
Probab=23.13 E-value=9.4e+02 Score=26.67 Aligned_cols=42 Identities=24% Similarity=0.367 Sum_probs=31.8
Q ss_pred HHHHHHhhcCCCccEEeecCCC-CeEEEE--------ecCCHHHHHHHHHH
Q 021061 144 SKIKKIIYKTKGVDNVTIDGGK-DLVTVK--------GTMDVKELVPYLKE 185 (318)
Q Consensus 144 ~kI~k~l~~~~GV~sv~vd~~~-~~v~V~--------g~~d~~~l~~~l~~ 185 (318)
..|+..|.+++||..|++.... ..+.|. -.+++.+|...|+.
T Consensus 169 ~~l~~~L~~i~gV~~V~~~G~~~~ei~V~vd~~kl~~~gls~~~v~~ai~~ 219 (1040)
T PRK10503 169 TRVAQKISQVSGVGLVTLSGGQRPAVRVKLNAQAIAALGLTSETVRTAITG 219 (1040)
T ss_pred HHHHHHhcCCCCceEEEecCCCceEEEEEECHHHHHHcCCCHHHHHHHHHH
Confidence 5788999999999999988743 445554 23677788888874
No 56
>PF13732 DUF4162: Domain of unknown function (DUF4162)
Probab=22.35 E-value=2e+02 Score=20.66 Aligned_cols=43 Identities=19% Similarity=0.236 Sum_probs=29.3
Q ss_pred hhcCCCccEEeecCCC-CeEEEEecCCHHHHHHHHHHhcCCCeEEc
Q 021061 150 IYKTKGVDNVTIDGGK-DLVTVKGTMDVKELVPYLKEKLKRNVEVV 194 (318)
Q Consensus 150 l~~~~GV~sv~vd~~~-~~v~V~g~~d~~~l~~~l~~k~g~~a~~v 194 (318)
|..++||.++...... -.+.|....+..+|+..|. ..|. +.-.
T Consensus 26 l~~~~~v~~v~~~~~~~~~i~l~~~~~~~~ll~~l~-~~g~-I~~f 69 (84)
T PF13732_consen 26 LEELPGVESVEQDGDGKLRIKLEDEETANELLQELI-EKGI-IRSF 69 (84)
T ss_pred HhhCCCeEEEEEeCCcEEEEEECCcccHHHHHHHHH-hCCC-eeEE
Confidence 7788999998765322 2334445577889999998 6676 5443
No 57
>PF14437 MafB19-deam: MafB19-like deaminase
Probab=22.15 E-value=1.8e+02 Score=24.25 Aligned_cols=40 Identities=23% Similarity=0.329 Sum_probs=29.8
Q ss_pred ceEEEEE-eechhhhHHHHHHHhhcCCCccEEeecCC-CCeEE
Q 021061 129 STVVLKI-RLHCEGCISKIKKIIYKTKGVDNVTIDGG-KDLVT 169 (318)
Q Consensus 129 ~~~~l~v-gm~C~~C~~kI~k~l~~~~GV~sv~vd~~-~~~v~ 169 (318)
..++|.| .-.|..|..-|...+.+ -|+.+++|... ++++.
T Consensus 100 ~~~tm~Vdr~vC~~C~~~i~~~a~~-lGl~~L~I~~~~sG~~~ 141 (146)
T PF14437_consen 100 RSMTMYVDRDVCGYCGGDIPSMAEK-LGLKSLTIHEPDSGKVY 141 (146)
T ss_pred CeEEEEECcccchHHHHHHHHHHHH-cCCCeEEEEecCCCcEE
Confidence 4678888 78899999888776655 48888888765 55443
No 58
>PF09580 Spore_YhcN_YlaJ: Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ); InterPro: IPR019076 This entry contains YhcN and YlaJ, which are predicted lipoproteins that have been detected as spore proteins but not vegetative proteins in Bacillus subtilis. Both appear to be expressed under control of the RNA polymerase sigma-G factor. The YlaJ-like members of this family have a low-complexity, strongly acidic, 40-residue C-terminal domain.
Probab=21.95 E-value=1.8e+02 Score=24.39 Aligned_cols=32 Identities=22% Similarity=0.251 Sum_probs=27.4
Q ss_pred hhhHHHHHHHhhcCCCccEEeecCCCCeEEEE
Q 021061 140 EGCISKIKKIIYKTKGVDNVTIDGGKDLVTVK 171 (318)
Q Consensus 140 ~~C~~kI~k~l~~~~GV~sv~vd~~~~~v~V~ 171 (318)
..=+..|.+.+.+++||.++.+-...+.+.|.
T Consensus 74 ~~~a~~i~~~v~~~~~V~~A~vvv~~~~a~Va 105 (177)
T PF09580_consen 74 QQLADRIANRVKKVPGVEDATVVVTDDNAYVA 105 (177)
T ss_pred HHHHHHHHHHHhcCCCceEEEEEEECCEEEEE
Confidence 45578999999999999999988888888875
No 59
>PRK14054 methionine sulfoxide reductase A; Provisional
Probab=20.37 E-value=2e+02 Score=24.65 Aligned_cols=28 Identities=14% Similarity=0.389 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHhcCCCeeEEEEecCCCE
Q 021061 38 EGCAKKIKRAMKNYEGVVDVKTDCGANK 65 (318)
Q Consensus 38 ~~Ca~kIe~~L~~l~GV~~v~v~~~~~~ 65 (318)
.+|-.-++..+..++||.++.+-.+.+.
T Consensus 10 gGCFWg~E~~f~~~~GV~~t~vGYagG~ 37 (172)
T PRK14054 10 GGCFWGMEAPFDRVKGVISTRVGYTGGH 37 (172)
T ss_pred cCChhhhHHHHccCCCEEEEEeeecCCC
Confidence 4677777888999999999998877664
Done!