Query 021062
Match_columns 318
No_of_seqs 305 out of 2019
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 12:11:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021062.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021062hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ipb_A PHON protein, class A n 99.8 8.4E-19 2.9E-23 157.0 8.4 101 111-239 97-197 (230)
2 1d2t_A Acid phosphatase; all a 99.8 1.6E-18 5.5E-23 155.2 9.3 101 111-239 109-209 (231)
3 1qi9_A Protein (vanadium bromo 99.4 8.5E-14 2.9E-18 137.3 6.2 119 113-242 377-509 (556)
4 1up8_A Vanadium-dependent brom 99.2 4.1E-11 1.4E-15 118.5 10.4 87 156-242 478-576 (598)
5 3bb0_A Vanadium chloroperoxida 99.1 1.1E-10 3.6E-15 116.7 9.0 125 104-234 340-511 (609)
6 2lx0_A Membrane fusion protein 21.5 1.2E+02 0.0041 17.1 3.4 24 218-241 2-25 (32)
7 1jb0_I Photosystem 1 reaction 17.6 1.6E+02 0.0054 17.9 3.5 25 63-87 8-32 (38)
8 3iyz_A Aquaporin-4; water tran 13.5 7.2E+02 0.025 22.5 10.5 21 225-245 251-271 (340)
9 2ksd_A Aerobic respiration con 13.5 2.1E+02 0.007 21.9 4.0 37 204-240 35-72 (115)
10 4b19_A PEPA1; toxin, toxin apo 11.1 1.1E+02 0.0039 17.6 1.4 20 223-242 6-25 (30)
No 1
>2ipb_A PHON protein, class A nonspecific acid phosphatase PHON; class-A bacterial non-specific acid phosphatase; 2.23A {Salmonella typhimurium} PDB: 2a96_A 2akc_A
Probab=99.76 E-value=8.4e-19 Score=156.96 Aligned_cols=101 Identities=26% Similarity=0.166 Sum_probs=74.1
Q ss_pred HHHHHHHHhhCCCCCCcccccCCCCCcccccccceeecCCcccccCCCCCCCCchHHHHHHHHHHHHHHHhhcccccccC
Q 021062 111 VLTDAIKIAVGRPRPNFFWRCFPDGIAVYDQFNNVICHGDKHVVNEGHKSFPSGHTSWSFAGLGFLSLYISGKIKAFDRR 190 (318)
Q Consensus 111 ~i~~~lK~~~grpRP~~~~~c~p~~~~~~~~~~~~~c~~~~~~~~~~~~SFPSGHaa~a~a~~~~l~~~l~~~~~~~~~~ 190 (318)
+++..+|..++|+||+.... ...|........+.++||||||++.+++++++++.++..+
T Consensus 97 ~~~~~lK~~~~r~RP~~~~~-------------~~~~~~~~~~~~~~~~SFPSGHa~~a~a~a~~l~~~~~~~------- 156 (230)
T 2ipb_A 97 YATASAKKYYMRTRPFVLFN-------------HSTCRPEDENTLRKDGSYPSGHDAYSTLLALVLSQARPER------- 156 (230)
T ss_dssp TTTHHHHHHHCCCCHHHHTT-------------CCCSCGGGHHHHHTSCCSSCHHHHHHHHHHHHHHHHCGGG-------
T ss_pred HHHHHHHHHhCCCCcCccCC-------------CCeeccCcccCCCCCCCcChHHHHHHHHHHHHHHHHHHHH-------
Confidence 78899999999999975421 0112211111245789999999999999887776543211
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHHHHHHHHH
Q 021062 191 GHVAKLCLVFLPLLFASLVGISRVDDYWHHWQDVFAGGLLGLVVATFCY 239 (318)
Q Consensus 191 ~~~~r~~~~~~~l~~a~lv~~SRv~~g~H~~sDVlaG~liG~~~a~~~~ 239 (318)
.. ..+.++.++|+||||+|+||++||++|+++|..++..++
T Consensus 157 ---~~-----~~~~~a~~v~~SRv~~G~H~~sDVlaG~~lG~~~~~~~~ 197 (230)
T 2ipb_A 157 ---AQ-----ELARRGWEFGQSRVICGAHWQSDVDAGRYVGAVEFARLQ 197 (230)
T ss_dssp ---HH-----HHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHT
T ss_pred ---HH-----HHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHH
Confidence 11 124577899999999999999999999999999887653
No 2
>1d2t_A Acid phosphatase; all alpha, hydrolase; 1.90A {Escherichia blattae} SCOP: a.111.1.1 PDB: 1eoi_A 1iw8_A
Probab=99.75 E-value=1.6e-18 Score=155.20 Aligned_cols=101 Identities=27% Similarity=0.211 Sum_probs=74.3
Q ss_pred HHHHHHHHhhCCCCCCcccccCCCCCcccccccceeecCCcccccCCCCCCCCchHHHHHHHHHHHHHHHhhcccccccC
Q 021062 111 VLTDAIKIAVGRPRPNFFWRCFPDGIAVYDQFNNVICHGDKHVVNEGHKSFPSGHTSWSFAGLGFLSLYISGKIKAFDRR 190 (318)
Q Consensus 111 ~i~~~lK~~~grpRP~~~~~c~p~~~~~~~~~~~~~c~~~~~~~~~~~~SFPSGHaa~a~a~~~~l~~~l~~~~~~~~~~ 190 (318)
+++..+|..++|+||+.... +..|........+.++||||||++.++++++++..++..+
T Consensus 109 ~~~~~lK~~~~r~RP~~~~~-------------~~~~~p~~~~~~~~~~SFPSGHa~~a~a~a~~l~~~~~~~------- 168 (231)
T 1d2t_A 109 LATRSAKDHYMRIRPFAFYG-------------VSTCNTTEQDKLSKNGSYPSGHTSIGWATALVLAEINPQR------- 168 (231)
T ss_dssp TTTHHHHHHHCCCCHHHHHT-------------CCCSCC--CCCCCSSCCSSCHHHHHHHHHHHHHHHHCGGG-------
T ss_pred HHHHHHHHHhCCCCcCccCC-------------CCceecCCcCCCCCCCCCChHHHHHHHHHHHHHHHHHHHH-------
Confidence 78899999999999985421 0111100001135789999999999999888776653221
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHHHHHHHHH
Q 021062 191 GHVAKLCLVFLPLLFASLVGISRVDDYWHHWQDVFAGGLLGLVVATFCY 239 (318)
Q Consensus 191 ~~~~r~~~~~~~l~~a~lv~~SRv~~g~H~~sDVlaG~liG~~~a~~~~ 239 (318)
+. ..+.++.++|+||||+|+||++||++|+++|..++..++
T Consensus 169 ----~~----~~~~~a~~v~~SRvylGvH~psDVlaG~~lG~~~~~~~~ 209 (231)
T 1d2t_A 169 ----QN----EILKRGYELGQSRVICGYHWQSDVDAARVVGSAVVATLH 209 (231)
T ss_dssp ----HH----HHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHH
T ss_pred ----HH----HHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHH
Confidence 11 235678899999999999999999999999999987654
No 3
>1qi9_A Protein (vanadium bromoperoxidase); haloperoxidase, oxidoreductase; 2.05A {Ascophyllum nodosum} SCOP: a.111.1.2
Probab=99.43 E-value=8.5e-14 Score=137.34 Aligned_cols=119 Identities=19% Similarity=0.054 Sum_probs=75.2
Q ss_pred HHHHHHhhCCCCCCcccccCCCCCcccccccceeecCCcccccCCCCCCCCchHHHHHHHHHHHHHHHhhcc--cccccC
Q 021062 113 TDAIKIAVGRPRPNFFWRCFPDGIAVYDQFNNVICHGDKHVVNEGHKSFPSGHTSWSFAGLGFLSLYISGKI--KAFDRR 190 (318)
Q Consensus 113 ~~~lK~~~grpRP~~~~~c~p~~~~~~~~~~~~~c~~~~~~~~~~~~SFPSGHaa~a~a~~~~l~~~l~~~~--~~~~~~ 190 (318)
+.++|.++.|+||+... ++........ .......++||||||++.+++++.++..++..+. ..++.+
T Consensus 377 ~~lLK~l~~RpRP~~~~---~~~~~Ll~~~--------~~~~tp~~~SFPSGHAt~A~A~A~vL~~l~g~~~~~~~~~~r 445 (556)
T 1qi9_A 377 AELLKRVAAINAAQNPN---NEVTYLLPQA--------IQEGSPTHPSYPSGHATQNGAFATVLKALIGLDRGGDCYPDP 445 (556)
T ss_dssp HHHHHHHHHHHHHHSGG---GCCCCCCCBS--------STTCSCSSCCSSCHHHHHHHHHHHHHHHHHCHHHHTSBCSSC
T ss_pred hhHHHhhhccCCCCCCc---cccceeeecc--------cccCCCCCCCCChHHHHHHHHHHHHHHHHHhccccccccccc
Confidence 35899999999996310 1100000000 0000246799999999999999988877763220 000000
Q ss_pred -----chhHH-----HHHH--HHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHHHHHHHHHHhh
Q 021062 191 -----GHVAK-----LCLV--FLPLLFASLVGISRVDDYWHHWQDVFAGGLLGLVVATFCYLQF 242 (318)
Q Consensus 191 -----~~~~r-----~~~~--~~~l~~a~lv~~SRv~~g~H~~sDVlaG~liG~~~a~~~~~~~ 242 (318)
....+ .++. .....++.++|+||||.|+||++||++|+++|..++..++...
T Consensus 446 ~~~~~~G~~r~~~~~~~l~~~~~l~~lA~lIg~SRVYlGVHYPSDVlaG~lLG~~va~~vl~~~ 509 (556)
T 1qi9_A 446 VYPDDDGLKLIDFRGSCLTFEGEINKLAVNVAFGRQMLGIHYRFDGIQGLLLGETITVRTLHQE 509 (556)
T ss_dssp EEECTTSSSEEECCSSCCBHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccceeehhhHHHHHHHHHHHHHHeeCccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000 0011 1134578899999999999999999999999999998877654
No 4
>1up8_A Vanadium-dependent bromoperoxidase 1; haloperoxidase, vanadate; 2.20A {Corallina pilulifera} SCOP: a.111.1.2 PDB: 1qhb_A
Probab=99.20 E-value=4.1e-11 Score=118.49 Aligned_cols=87 Identities=25% Similarity=0.194 Sum_probs=62.4
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHHHhhcccc-----cccCch--hH-----HHHHHHHHHHHHHHHHHhhhcCCCCChhh
Q 021062 156 EGHKSFPSGHTSWSFAGLGFLSLYISGKIKA-----FDRRGH--VA-----KLCLVFLPLLFASLVGISRVDDYWHHWQD 223 (318)
Q Consensus 156 ~~~~SFPSGHaa~a~a~~~~l~~~l~~~~~~-----~~~~~~--~~-----r~~~~~~~l~~a~lv~~SRv~~g~H~~sD 223 (318)
..+.|||||||+.+++++..+..++...... +...+. .. .+.+......++..+|+||||.|+||++|
T Consensus 478 P~~pSYPSGHAt~S~A~A~vL~~lf~~~~~~~~~~~~~~~G~~R~~p~~g~~ltv~~sl~~lA~eig~SRVYlGVHypSD 557 (598)
T 1up8_A 478 PFHPSYGSGHAVVAGACVTILKAFFDSGIEIDQVFEVDKDEDKLVKSSFKGTLTVAGELNKLADNIAIGRNMAGVHYFSD 557 (598)
T ss_dssp CSSCSSSCHHHHHHHHHHHHHHHHBTTTCBCSCCEEECSSSSSEEECCCCSCCBHHHHHHHHHHHHHHHHHHHTSCCHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHHhccccccccccccccCcccccccccccchhHHHHHHHHHHHHHHHhheeeeecHHH
Confidence 3679999999999999999888776554310 000000 00 01111234568899999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhh
Q 021062 224 VFAGGLLGLVVATFCYLQF 242 (318)
Q Consensus 224 VlaG~liG~~~a~~~~~~~ 242 (318)
|++|+.+|..++..+....
T Consensus 558 VlAG~~LG~aVa~~vl~~~ 576 (598)
T 1up8_A 558 QFESLLLGEQVAIGILEEQ 576 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999988776654
No 5
>3bb0_A Vanadium chloroperoxidase; protein phosphate-intermediate complex, phospatase activity, chloride, metal-binding, oxidoreductase, secreted; 1.50A {Curvularia inaequalis} PDB: 1vns_A 1vnc_A 1vni_A 1idq_A 1vne_A 1vnf_A 1idu_A 1vng_A 1vnh_A
Probab=99.12 E-value=1.1e-10 Score=116.72 Aligned_cols=125 Identities=17% Similarity=0.061 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCCcccc-------cCCCCCcccccccceeecCCcccccCCCCCCCCchHHHHHHHHHHH
Q 021062 104 YSVLVTGVLTDAIKIAVGRPRPNFFWR-------CFPDGIAVYDQFNNVICHGDKHVVNEGHKSFPSGHTSWSFAGLGFL 176 (318)
Q Consensus 104 ~~~~~~~~i~~~lK~~~grpRP~~~~~-------c~p~~~~~~~~~~~~~c~~~~~~~~~~~~SFPSGHaa~a~a~~~~l 176 (318)
.++.-+.+.+..+|..+.|+||...-+ +.|........ .. ..+.......+.||||||++.+++++..+
T Consensus 340 ~A~~DA~ia~w~~K~~y~R~RP~taI~~~~~~~~~dp~w~~l~~~---~~-~~~~~~~tP~~pSYPSGHAt~s~A~A~vL 415 (609)
T 3bb0_A 340 VACTDAGIFSWKEKWEFEFWRPLSGVRDDGRPDHGDPFWLTLGAP---AT-NTNDIPFKPPFPAYPSGHATFGGAVFQMV 415 (609)
T ss_dssp HHHHHHHHHHHHHHHHHCBCCHHHHHHTCCCTTTCCTTCCBCCBC---CT-TSSSCCBCCSSCCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhcCCCcCchhhcccccccCCccchhhccc---cc-ccccccCCCCCCCCCCHHHHHHHHHHHHH
Confidence 344445555667999999999964321 11111100000 00 00000123577999999999999999998
Q ss_pred HHHHh-----------hccccc------------------cc-------Cc----hhHHHHHHHHHHHHHHHHHHhhhcC
Q 021062 177 SLYIS-----------GKIKAF------------------DR-------RG----HVAKLCLVFLPLLFASLVGISRVDD 216 (318)
Q Consensus 177 ~~~l~-----------~~~~~~------------------~~-------~~----~~~r~~~~~~~l~~a~lv~~SRv~~ 216 (318)
..++. .++... +. .+ ...+.+ .....++..+|+||||.
T Consensus 416 ~~~f~~~~~~~~~~G~d~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~r~~--~sl~~~A~e~g~SRIY~ 493 (609)
T 3bb0_A 416 RRYYNGRVGTWKDDEPDNIAIDMMISEELNGVNRDLRQPYDPTAPIEDQPGIVRTRIVRHF--DSAWELMFENAISRIFL 493 (609)
T ss_dssp HHHHBTTTBCCCTTSCCCCCEEEEECTTSSSSCEEESSCCCTTSCGGGSCEEECCCCEEEE--SCHHHHHHHHHHHHHHT
T ss_pred HHHHhcccccccccCccccceeecccccccccccccccccccccccccccccccccchhhH--HHHHHHHHHHhhhhhee
Confidence 88772 111100 00 00 000000 01234678999999999
Q ss_pred CCCChhhhHHHHHHHHHH
Q 021062 217 YWHHWQDVFAGGLLGLVV 234 (318)
Q Consensus 217 g~H~~sDVlaG~liG~~~ 234 (318)
|+||++||++|..+|..+
T Consensus 494 GVHypsDv~aG~~lG~~~ 511 (609)
T 3bb0_A 494 GVHWRFDAAAARDILIPT 511 (609)
T ss_dssp TSSCHHHHSCHHHHBCBC
T ss_pred eeeCHHHHHHHHHHHHhh
Confidence 999999999999999776
No 6
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=21.50 E-value=1.2e+02 Score=17.05 Aligned_cols=24 Identities=25% Similarity=0.237 Sum_probs=14.6
Q ss_pred CCChhhhHHHHHHHHHHHHHHHHh
Q 021062 218 WHHWQDVFAGGLLGLVVATFCYLQ 241 (318)
Q Consensus 218 ~H~~sDVlaG~liG~~~a~~~~~~ 241 (318)
.|..-+|++|.+.=+....+.+++
T Consensus 2 khtiweviaglvalltflafgfwl 25 (32)
T 2lx0_A 2 KHTIWEVIAGLVALLTFLAFGFWL 25 (32)
T ss_dssp CSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHH
Confidence 477888998876544443344443
No 7
>1jb0_I Photosystem 1 reaction centre subunit VIII; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.17.1 PDB: 3pcq_I*
Probab=17.62 E-value=1.6e+02 Score=17.95 Aligned_cols=25 Identities=20% Similarity=0.515 Sum_probs=18.7
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHH
Q 021062 63 NTVPVWAVPVYAVLVPVIIFLIVYY 87 (318)
Q Consensus 63 ~tv~~~~~~~~~i~lp~~i~~~~~~ 87 (318)
...|...++++++++|.+.+....+
T Consensus 8 ~~LPsI~VPlVglvfPai~Mallf~ 32 (38)
T 1jb0_I 8 SFLPWIFIPVVCWLMPTVVMGLLFL 32 (38)
T ss_dssp TTHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred hhCChhhHhHHHHHHHHHHHHHHHH
Confidence 3467778888999999888766544
No 8
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus}
Probab=13.50 E-value=7.2e+02 Score=22.51 Aligned_cols=21 Identities=33% Similarity=0.592 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHhhcCC
Q 021062 225 FAGGLLGLVVATFCYLQFFPP 245 (318)
Q Consensus 225 laG~liG~~~a~~~~~~~~~~ 245 (318)
+.|=++|.+++.+.|..++.+
T Consensus 251 wvgPiiGailaallY~~l~~p 271 (340)
T 3iyz_A 251 WVGPIIGAVLAGALYEYVFCP 271 (340)
T ss_pred hHHHHHHHHHHHHHHHHHhCC
Confidence 467788888888888877643
No 9
>2ksd_A Aerobic respiration control sensor protein ARCB; methods development, histidine kinase receptor, membrane domain, two-helical hairpin; NMR {Escherichia coli}
Probab=13.48 E-value=2.1e+02 Score=21.92 Aligned_cols=37 Identities=16% Similarity=0.156 Sum_probs=29.0
Q ss_pred HHHHHHHHhhhcCCCCChhhhHHHHHHHHHHH-HHHHH
Q 021062 204 LFASLVGISRVDDYWHHWQDVFAGGLLGLVVA-TFCYL 240 (318)
Q Consensus 204 ~~a~lv~~SRv~~g~H~~sDVlaG~liG~~~a-~~~~~ 240 (318)
.+..=+.++=+..|.=++.|++...++|.+++ ++.|.
T Consensus 35 A~~~q~~~~~~~~G~v~~~Di~rsI~Fgli~aP~viYF 72 (115)
T 2ksd_A 35 AIVVQMAVTMVLHGQVESIDVIRSIFFGLLITPWAVYF 72 (115)
T ss_dssp HHHHHHHHHHHSCCCSSSSSCCSTTTHHHHHHHHHHHH
T ss_pred HHHHHHhHhhhhcccchHHHHHHHHHHHHHHHHHHHHH
Confidence 34445677788899999999999999999998 44443
No 10
>4b19_A PEPA1; toxin, toxin apoptotic peptide, apoptosis; NMR {Staphylococcus aureus}
Probab=11.08 E-value=1.1e+02 Score=17.57 Aligned_cols=20 Identities=25% Similarity=0.351 Sum_probs=14.2
Q ss_pred hhHHHHHHHHHHHHHHHHhh
Q 021062 223 DVFAGGLLGLVVATFCYLQF 242 (318)
Q Consensus 223 DVlaG~liG~~~a~~~~~~~ 242 (318)
.+++-.+-|.+++++.+|+-
T Consensus 6 ~iia~visGcivalF~hWL~ 25 (30)
T 4b19_A 6 HIIAPVISGCAIAFFSYWLS 25 (30)
T ss_dssp SSTTTTHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 35566677788888888764
Done!