BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 021063
         (318 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2L1O|A Chain A, Zinc To Cadmium Replacement In The A. Thaliana Superman
           Cys2his2 Zinc Finger Induces Structural Rearrangements
           Of Typical Dna Base Determinant Positions
 pdb|1NJQ|A Chain A, Nmr Structure Of The Single Qalggh Zinc Finger Domain From
           Arabidopsis Thaliana Superman Protein
          Length = 39

 Score = 34.7 bits (78), Expect = 0.076,   Method: Composition-based stats.
 Identities = 14/23 (60%), Positives = 15/23 (65%)

Query: 227 HECSICGSEFTSGQALGGHMRRH 249
           + CS C  EF S QALGGHM  H
Sbjct: 7   YTCSFCKREFRSAQALGGHMNVH 29



 Score = 30.8 bits (68), Expect = 0.91,   Method: Composition-based stats.
 Identities = 13/23 (56%), Positives = 13/23 (56%)

Query: 132 YECKTCNRSFPSFQALGGHRASH 154
           Y C  C R F S QALGGH   H
Sbjct: 7   YTCSFCKREFRSAQALGGHMNVH 29


>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           752- 784) Of Human Zinc Finger Protein 28 Homolog
          Length = 46

 Score = 29.3 bits (64), Expect = 3.2,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 18/32 (56%)

Query: 225 KIHECSICGSEFTSGQALGGHMRRHRAAVATG 256
           K +ECS+CG  F+  Q+L  H R H     +G
Sbjct: 11  KPYECSVCGKAFSHRQSLSVHQRIHSGKKPSG 42


>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
          Length = 82

 Score = 28.1 bits (61), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 223 GNKIHECSICGSEFTSGQALGGHMRRH 249
           G K H+C +CG  F+    L  H R+H
Sbjct: 54  GEKPHKCQVCGKAFSQSSNLITHSRKH 80


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.129    0.377 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,604,795
Number of Sequences: 62578
Number of extensions: 235142
Number of successful extensions: 724
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 662
Number of HSP's gapped (non-prelim): 63
length of query: 318
length of database: 14,973,337
effective HSP length: 99
effective length of query: 219
effective length of database: 8,778,115
effective search space: 1922407185
effective search space used: 1922407185
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)