Query 021064
Match_columns 318
No_of_seqs 228 out of 1248
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 07:19:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021064.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021064hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00240 60S ribosomal protein 100.0 2.6E-82 5.6E-87 605.3 27.4 272 6-277 3-281 (323)
2 PTZ00135 60S acidic ribosomal 100.0 9.2E-81 2E-85 594.3 27.4 274 1-277 1-274 (310)
3 PRK04019 rplP0 acidic ribosoma 100.0 2.4E-69 5.3E-74 520.6 24.2 264 6-275 3-267 (330)
4 KOG0815 60S acidic ribosomal p 100.0 1.8E-67 3.9E-72 470.7 21.4 245 1-248 1-245 (245)
5 cd05795 Ribosomal_P0_L10e Ribo 100.0 5.2E-56 1.1E-60 393.3 19.4 175 9-185 1-175 (175)
6 cd05796 Ribosomal_P0_like Ribo 100.0 5.3E-50 1.1E-54 351.2 17.6 162 9-171 1-163 (163)
7 KOG0816 Protein involved in mR 100.0 4.9E-49 1.1E-53 348.1 15.3 196 4-200 16-212 (223)
8 COG0244 RplJ Ribosomal protein 100.0 1.5E-31 3.3E-36 237.1 7.7 171 6-200 3-174 (175)
9 cd00379 Ribosomal_L10_P0 Ribos 99.9 1.6E-24 3.5E-29 186.8 4.0 122 9-138 1-126 (155)
10 PF00466 Ribosomal_L10: Riboso 99.9 4.2E-22 9E-27 160.4 10.0 96 7-109 2-99 (100)
11 PRK00099 rplJ 50S ribosomal pr 99.8 1.6E-20 3.4E-25 165.8 11.0 97 7-110 2-99 (172)
12 cd05797 Ribosomal_L10 Ribosoma 99.8 2.3E-20 5E-25 162.1 10.8 98 7-111 1-99 (157)
13 PRK04019 rplP0 acidic ribosoma 99.8 2.2E-20 4.8E-25 180.6 9.8 229 12-259 35-279 (330)
14 PTZ00240 60S ribosomal protein 98.7 1.4E-07 2.9E-12 91.4 11.7 218 13-250 36-280 (323)
15 PTZ00135 60S acidic ribosomal 98.4 2.1E-06 4.6E-11 82.8 10.8 222 12-253 37-276 (310)
16 KOG4241 Mitochondrial ribosoma 96.9 0.0032 6.9E-08 57.4 7.0 87 15-109 79-166 (245)
17 cd05795 Ribosomal_P0_L10e Ribo 93.2 0.42 9.1E-06 42.5 7.8 128 12-148 30-175 (175)
18 PF00428 Ribosomal_60s: 60s Ac 88.9 0.13 2.8E-06 40.7 0.1 43 234-276 1-43 (88)
19 PF07697 7TMR-HDED: 7TM-HD ext 83.7 0.7 1.5E-05 41.3 2.1 27 150-183 193-219 (222)
20 COG2117 Predicted subunit of t 72.2 6 0.00013 35.4 4.3 75 160-243 2-84 (198)
21 TIGR03602 streptolysinS bacter 65.6 2.9 6.3E-05 29.8 0.8 13 303-315 22-34 (56)
22 KOG4101 Cysteine-rich hydropho 57.8 3.1 6.8E-05 36.2 -0.2 13 306-318 100-112 (175)
23 PF08800 VirE_N: VirE N-termin 55.4 19 0.0004 30.6 4.2 33 19-51 24-56 (136)
24 COG1480 Predicted membrane-ass 54.7 10 0.00022 40.6 2.9 50 132-189 219-273 (700)
25 KOG3414 Component of the U4/U6 50.4 32 0.00069 29.6 4.7 77 12-107 42-118 (142)
26 PF07945 Toxin_16: Janus-atrac 50.1 5.5 0.00012 25.8 0.1 11 304-314 9-19 (36)
27 KOG0716 Molecular chaperone (D 46.9 5.2 0.00011 38.3 -0.6 11 308-318 147-158 (279)
28 PF03716 WCCH: WCCH motif ; I 43.9 10 0.00022 23.3 0.6 8 310-317 6-13 (25)
29 PF05478 Prominin: Prominin; 40.5 10 0.00022 41.4 0.4 9 307-315 114-123 (806)
30 PF15482 CCER1: Coiled-coil do 40.0 12 0.00026 33.7 0.6 14 303-317 108-121 (214)
31 PF08496 Peptidase_S49_N: Pept 38.5 28 0.00061 30.6 2.7 26 24-49 96-122 (155)
32 smart00226 LMWPc Low molecular 37.1 37 0.00079 28.2 3.1 57 125-187 3-59 (140)
33 cd03523 NTR_like NTR_like doma 37.1 13 0.00027 29.6 0.3 9 306-314 53-61 (105)
34 PF05872 DUF853: Bacterial pro 36.0 1.8E+02 0.0039 30.3 8.3 127 139-273 41-207 (502)
35 TIGR00762 DegV EDD domain prot 34.3 2.9E+02 0.0063 25.8 9.1 120 12-186 65-186 (275)
36 PLN00208 translation initiatio 34.2 58 0.0013 28.4 3.9 47 146-193 61-118 (145)
37 PF15260 FAM219A: Protein fami 31.9 19 0.0004 30.5 0.5 9 306-314 111-119 (125)
38 PTZ00329 eukaryotic translatio 31.9 56 0.0012 28.8 3.5 28 170-197 95-122 (155)
39 PRK04531 acetylglutamate kinas 30.2 1.6E+02 0.0034 29.7 6.8 106 96-234 18-130 (398)
40 COG0303 MoeA Molybdopterin bio 28.4 61 0.0013 32.7 3.6 29 119-148 142-170 (404)
41 PF09778 Guanylate_cyc_2: Guan 28.1 51 0.0011 30.5 2.7 56 169-225 46-103 (212)
42 COG5133 Uncharacterized conser 27.0 1.1E+02 0.0024 26.8 4.4 78 96-176 54-151 (181)
43 PF14226 DIOX_N: non-haem diox 26.5 1.4E+02 0.003 23.6 4.8 42 7-49 9-50 (116)
44 TIGR01672 AphA HAD superfamily 26.4 2.2E+02 0.0047 26.5 6.7 122 15-146 51-186 (237)
45 PF12953 DUF3842: Domain of un 26.1 98 0.0021 26.6 3.8 73 28-100 2-83 (131)
46 PRK10126 tyrosine phosphatase; 26.1 60 0.0013 27.6 2.7 59 124-189 6-64 (147)
47 TIGR00253 RNA_bind_YhbY putati 25.7 3.5E+02 0.0077 21.7 7.0 76 15-95 6-85 (95)
48 PF08098 ATX_III: Anemonia sul 24.8 29 0.00063 21.4 0.3 10 309-318 3-12 (27)
49 PF04472 DUF552: Protein of un 24.6 1.6E+02 0.0034 22.1 4.4 36 14-50 11-46 (73)
50 PF13625 Helicase_C_3: Helicas 24.4 2.4E+02 0.0053 23.2 6.0 105 155-276 2-115 (129)
51 cd05796 Ribosomal_P0_like Ribo 24.2 3.7E+02 0.008 23.3 7.3 112 12-131 30-161 (163)
52 PRK10343 RNA-binding protein Y 23.4 4E+02 0.0087 21.5 6.8 76 15-95 8-87 (97)
53 PF03993 DUF349: Domain of Unk 22.7 51 0.0011 24.4 1.4 38 6-50 31-68 (77)
54 cd03067 PDI_b_PDIR_N PDIb fami 22.3 3.1E+02 0.0066 22.8 5.9 66 38-111 6-73 (112)
55 smart00460 TGc Transglutaminas 22.3 54 0.0012 23.2 1.4 17 138-154 17-33 (68)
56 COG0303 MoeA Molybdopterin bio 21.9 1.3E+02 0.0028 30.5 4.5 112 159-274 144-266 (404)
57 PF04225 OapA: Opacity-associa 21.2 55 0.0012 25.6 1.4 45 122-171 3-50 (85)
58 PRK06731 flhF flagellar biosyn 20.8 2.7E+02 0.0059 26.4 6.2 93 26-128 155-258 (270)
59 PRK01777 hypothetical protein; 20.5 74 0.0016 25.6 2.0 32 113-149 10-41 (95)
No 1
>PTZ00240 60S ribosomal protein P0; Provisional
Probab=100.00 E-value=2.6e-82 Score=605.34 Aligned_cols=272 Identities=40% Similarity=0.639 Sum_probs=264.3
Q ss_pred ccHHHHHHHHHHHHHHHhccCeEEEEEeCCCCcHHHHHHHHHccCCcEEEEEehHHHHHHHhhchhhcCCcccccc----
Q 021064 6 SKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNL---- 81 (318)
Q Consensus 6 k~~e~K~~~v~el~e~l~~y~~v~iv~~~~v~s~qlq~IR~~Lr~~a~~~vgKNtL~r~AL~~~~~~~~~~~l~~L---- 81 (318)
+.++||.+++++|++++++|++++||+++|++++|||+||+.||++++++|||||||++||++..++++.+++++|
T Consensus 3 ~~~~~K~~~v~~l~~~l~~y~~v~Iv~~~nv~s~qlq~IR~~lrg~a~~~~GKNtlm~~AL~~~~~~~~~~~~~~ll~~~ 82 (323)
T PTZ00240 3 SITTAKREYEERLVDCLTKYSCVLFVGMDNVRSQQVHDVRRALRGKAEFVMGKKTLQAKIVEKRAQAKKASAEAKLFNDQ 82 (323)
T ss_pred chhHHHHHHHHHHHHHHHhCCEEEEEEecCCCcHHHHHHHHHhhCCcEEEEecHHHHHHHHhhccccccchhHHHHhhhh
Confidence 5678999999999999999999999999999999999999999999999999999999999998877666567776
Q ss_pred ---cccccCceEEEEecCChHHHHHHHHhhccCccccCCCCCCceEEECCCCCCCCCCchhhhhhcCcceEEecceEEEe
Q 021064 82 ---IPLLQGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEII 158 (318)
Q Consensus 82 ---~~~L~G~~gLiFTn~dp~ev~k~l~~~k~~~~Ak~G~iA~~dVvIp~G~t~~~P~~~s~fqkLgIptki~kG~I~I~ 158 (318)
.++++||+||+|||+||++++++|+++++++|||+|+|||+||+||+|||+|+|+++++||+|||||+|++|+|+|.
T Consensus 83 ~~~~~~l~GnvgliFTn~~p~ev~~~l~~~k~~a~AraG~IAp~dVvvpaG~T~~~P~~~s~fq~LGIpTkI~kGkIeI~ 162 (323)
T PTZ00240 83 CEEKNLLSGNTGLIFTNNEVQEITSVLDSHRVKAPARVGAIAPCDVIVPAGSTGMEPTQTSFFQALNIATKIAKGMVEIV 162 (323)
T ss_pred ccccccccCCEEEEEeCCCHHHHHHHHHHcCCcccccCCCCCCceEEECCCCCCCCCcchHHHHHcCCCeEecCcEEEEe
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCeEEeecCcccChhHHHHHHHhCCCccccccceeeeeccCcccCCCcccCChHHHHHHHHHHHHHHHHHhhhcCCCCcc
Q 021064 159 TPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLA 238 (318)
Q Consensus 159 ~d~~v~k~Ge~v~~~qA~LL~~L~I~p~~~~l~l~~~~~~g~~~~~~~L~i~~e~~~~~~~~a~~~a~~ls~~~~ypt~~ 238 (318)
+|++||++||+||++||+||++|||+|++|+++++++||+|.+|++++|+||+|+|.++|++|++++++||+++||||++
T Consensus 163 ~d~~v~k~Ge~V~~~~A~LL~~L~IkP~~~gl~l~~vyd~g~i~~~~vL~i~~e~~~~~~~~a~~~~~~lsl~~~~pt~~ 242 (323)
T PTZ00240 163 TEKKVLSVGDKVDNSTATLLQKLNISPFYYQVEVLSVWDRGVLFTREDLSMTEDVVEKMLMEGLSNVAAMSLGAGIPTAA 242 (323)
T ss_pred cCeEEecCCCCcCHHHHHHHHHcCCCeEEEEEEEEEEEeCCeecCHHHcCCCHHHHHHHHHHHHHHHHHHHHhhCCCcHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHhhhhhcCccCCChHhHHHHhhcCCC
Q 021064 239 AAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLAVCIS 277 (318)
Q Consensus 239 s~p~~i~~a~~~a~ala~~~~~~~~~~~~~~~~l~~~~~ 277 (318)
|+||+|.|||++++|||++++|+||+++.++.++++|++
T Consensus 243 si~~~i~~a~~~~~alav~~~~~~~~~~~~~~~~A~~~~ 281 (323)
T PTZ00240 243 TIGPMLVDAFKNLLAVSVATSYEFEEHNGKELREAALEG 281 (323)
T ss_pred HHHHHHHHHHHHHHHHhhhcCcCChhhHHHHHhhhCHHh
Confidence 999999999999999999999999999999999998863
No 2
>PTZ00135 60S acidic ribosomal protein P0; Provisional
Probab=100.00 E-value=9.2e-81 Score=594.30 Aligned_cols=274 Identities=53% Similarity=0.858 Sum_probs=267.5
Q ss_pred CCcccccHHHHHHHHHHHHHHHhccCeEEEEEeCCCCcHHHHHHHHHccCCcEEEEEehHHHHHHHhhchhhcCCccccc
Q 021064 1 MVVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLN 80 (318)
Q Consensus 1 m~~~kk~~e~K~~~v~el~e~l~~y~~v~iv~~~~v~s~qlq~IR~~Lr~~a~~~vgKNtL~r~AL~~~~~~~~~~~l~~ 80 (318)
|+ ++.+++||++++++|++++++|+.++|++++||+++|||+||+.||++++++|||||||++||+++.++ .+++++
T Consensus 1 ~~-~~~~re~K~~~v~~l~e~l~~y~~v~vv~~~nv~s~ql~~iR~~LR~~a~~~vgKNTL~r~AL~~~~~~--~~~l~~ 77 (310)
T PTZ00135 1 MA-KPEKKAKKKAYFEKLYELLEKYKKILIVSVDNVGSKQMQDIRRSLRGKAELLMGKNTLIRKALKQRLEE--LPELEK 77 (310)
T ss_pred CC-cchhHHHHHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHHHhcCCEEEEEehHHHHHHHhhCccc--ccChHH
Confidence 56 788999999999999999999999999999999999999999999988999999999999999998655 345999
Q ss_pred ccccccCceEEEEecCChHHHHHHHHhhccCccccCCCCCCceEEECCCCCCCCCCchhhhhhcCcceEEecceEEEecC
Q 021064 81 LIPLLQGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITP 160 (318)
Q Consensus 81 L~~~L~G~~gLiFTn~dp~ev~k~l~~~k~~~~Ak~G~iA~~dVvIp~G~t~~~P~~~s~fqkLgIptki~kG~I~I~~d 160 (318)
|.++|+||+||+|||+||++++++|.+|++++|||+|.|||+||+||+|||+|+|+++++||+|||||+|++|+|+|.+|
T Consensus 78 L~~~LkG~~gliFTn~dp~ev~k~l~~~k~~~~AKaG~iAp~dv~ip~G~t~~~P~~~~~fq~LgipTkI~kG~I~I~~d 157 (310)
T PTZ00135 78 LLPHVKGNVGFVFTKDDLFEVKPVILENKVPAPARAGVIAPIDVVIPAGPTGMDPSQTSFFQALGIATKIVKGQIEITNE 157 (310)
T ss_pred HHhhccCCEEEEEECCCHHHHHHHHHHcCCccccccCCCCCceEEEcCCCCCCCcchhhHHHHcCCceEecCCeEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEeecCcccChhHHHHHHHhCCCccccccceeeeeccCcccCCCcccCChHHHHHHHHHHHHHHHHHhhhcCCCCccch
Q 021064 161 VELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAA 240 (318)
Q Consensus 161 ~~v~k~Ge~v~~~qA~LL~~L~I~p~~~~l~l~~~~~~g~~~~~~~L~i~~e~~~~~~~~a~~~a~~ls~~~~ypt~~s~ 240 (318)
++||++||+||++||+||++|||+|++|++++.++||+|.+|++++|+||+|+|.++|++|++++.+||+++||||++++
T Consensus 158 ~~v~k~Ge~v~~~~A~LL~~L~I~p~~~~l~~~~~yd~g~~~~~~vL~i~~e~~~~~~~~~~~~i~als~aag~pt~~s~ 237 (310)
T PTZ00135 158 VHLIKEGQKVGASQAVLLQKLNIKPFSYGLEVLSIYDNGSIYDAKVLDITDEDIVAKFQEGVQNVAAISLAAGYPTEASA 237 (310)
T ss_pred eEEecCCCCcCHHHHHHHHHcCCCeEEEEEEEEEEEECCeEeCHHHcCCCHHHHHHHHHHHHHHHHHHHHHhCCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhhhhhcCccCCChHhHHHHhhcCCC
Q 021064 241 PHMFVNAYKNVVAVALATEYSFPQADKVKEYLAVCIS 277 (318)
Q Consensus 241 p~~i~~a~~~a~ala~~~~~~~~~~~~~~~~l~~~~~ 277 (318)
||+|+|||++++|+|++++|+||+++++++++++|++
T Consensus 238 p~~ia~a~k~~~a~a~~~~~~~~~~~~~~~~~a~~~~ 274 (310)
T PTZ00135 238 PHSILNAFKNLAAIGLESGFTFPLAEKIKEALANPSA 274 (310)
T ss_pred HHHHHHHHHHHHHHHhhcCCCChhhHHHHHhhcCchh
Confidence 9999999999999999999999999999999999984
No 3
>PRK04019 rplP0 acidic ribosomal protein P0; Validated
Probab=100.00 E-value=2.4e-69 Score=520.62 Aligned_cols=264 Identities=31% Similarity=0.505 Sum_probs=255.5
Q ss_pred ccHHHHHHHHHHHHHHHhccCeEEEEEeCCCCcHHHHHHHHHccCCcEEEEEehHHHHHHHhhchhhcCCcccccccccc
Q 021064 6 SKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLL 85 (318)
Q Consensus 6 k~~e~K~~~v~el~e~l~~y~~v~iv~~~~v~s~qlq~IR~~Lr~~a~~~vgKNtL~r~AL~~~~~~~~~~~l~~L~~~L 85 (318)
+-++||+++|++|+++|++|++++|++|+|++++|+|+||+.||+.++|+|+|||||++||+++.+ +++++|.++|
T Consensus 3 ~~~e~K~~~v~el~~~l~~~~~v~iv~~~gl~~~ql~~lR~~lr~~~~~~v~KNtL~~~Al~~~~~----~~~~~L~~~l 78 (330)
T PRK04019 3 HVPEWKKEEVEELKELIKSYPVVGIVDLEGIPARQLQEIRRKLRGKAELKVSKNTLIKRALEEAGE----EDLEKLEDYL 78 (330)
T ss_pred chHHHHHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHHHHcCCEEEEEehHHHHHHHHhcCc----ccHHHHHhhc
Confidence 458999999999999999999999999999999999999999998899999999999999998753 3489999999
Q ss_pred cCceEEEEecCChHHHHHHHHhhccCccccCCCCCCceEEECCCCCCCCCCch-hhhhhcCcceEEecceEEEecCeEEe
Q 021064 86 QGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDPSQT-SFFQVLNIPTKINKGTVEIITPVELI 164 (318)
Q Consensus 86 ~G~~gLiFTn~dp~ev~k~l~~~k~~~~Ak~G~iA~~dVvIp~G~t~~~P~~~-s~fqkLgIptki~kG~I~I~~d~~v~ 164 (318)
+|++||+|||+||++++++|.+|++++|||+|+|||+||+||+|||++.|+++ ++||+|||||+|++|+|+|.+|++||
T Consensus 79 ~G~~alift~~dp~~v~k~l~~~~~~~~ak~G~iA~~divip~G~t~~~P~~~~~~l~~lgipt~i~~G~I~i~~~~~v~ 158 (330)
T PRK04019 79 EGQVALIFTNMNPFKLYKLLEKSKTPAPAKPGDIAPEDIVVPAGPTGFPPGPILSELQKLGIPARIQKGKIVIKKDTVVA 158 (330)
T ss_pred cCCEEEEEECCCHHHHHHHHHHcCCcccCCCCCCCCCeEEEcCCCCCCCCcccHHHHHHcCCCeEecCCEEEEecCeEEe
Confidence 99999999999999999999999999999999999999999999999999995 99999999999999999999999999
Q ss_pred ecCcccChhHHHHHHHhCCCccccccceeeeeccCcccCCCcccCChHHHHHHHHHHHHHHHHHhhhcCCCCccchhhHH
Q 021064 165 RKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMF 244 (318)
Q Consensus 165 k~Ge~v~~~qA~LL~~L~I~p~~~~l~l~~~~~~g~~~~~~~L~i~~e~~~~~~~~a~~~a~~ls~~~~ypt~~s~p~~i 244 (318)
++|++||++||++|++|||+|++|++++.++|++|.+|++++|+||+++|..+|++|++++++||++++|||++++||+|
T Consensus 159 ~~G~~v~~~~a~lL~~LgI~p~~~~~~i~a~~~~G~~~~~~~l~i~~e~~~~~i~~A~~~a~~Ls~~~~~pt~~tl~~~i 238 (330)
T PRK04019 159 KAGEVISPELANVLQKLGIKPIEVGLDLKAAYEDGVIYTPEVLAIDEEKYRSDIQEAAQNAFNLAVNAAYPTPETLETLI 238 (330)
T ss_pred cCCCCcCHHHHHHHHHcCCCHHHhhhHHHHHHhcCCccCHHHccCCHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhcCccCCChHhHHHHhhcC
Q 021064 245 VNAYKNVVAVALATEYSFPQADKVKEYLAVC 275 (318)
Q Consensus 245 ~~a~~~a~ala~~~~~~~~~~~~~~~~l~~~ 275 (318)
++||++|++||++++|+++ +.++.+|+++
T Consensus 239 ~kA~~~a~aLa~~~~~~t~--e~~~~il~kA 267 (330)
T PRK04019 239 QKAFREAKALAVEAGIVTP--ETADDILSKA 267 (330)
T ss_pred HHHHHHHHHHHHHcCCCCh--hhHHHHHHHH
Confidence 9999999999999999766 8888888776
No 4
>KOG0815 consensus 60S acidic ribosomal protein P0 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.8e-67 Score=470.67 Aligned_cols=245 Identities=64% Similarity=1.014 Sum_probs=240.2
Q ss_pred CCcccccHHHHHHHHHHHHHHHhccCeEEEEEeCCCCcHHHHHHHHHccCCcEEEEEehHHHHHHHhhchhhcCCccccc
Q 021064 1 MVVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLN 80 (318)
Q Consensus 1 m~~~kk~~e~K~~~v~el~e~l~~y~~v~iv~~~~v~s~qlq~IR~~Lr~~a~~~vgKNtL~r~AL~~~~~~~~~~~l~~ 80 (318)
|+ +...++||..++.++++++++|+.++++..+|+.+.|||+||+.||+++++.|||||+||+|++...++.+. ++.
T Consensus 1 m~-~~~~~e~k~~y~~K~~~L~~~y~~~~~v~~dnv~s~ql~~ir~~lrg~a~vlmgkntm~rrair~~~~~~~~--~~~ 77 (245)
T KOG0815|consen 1 MV-RADKAEKKAVYFTKLRQLFEEYPKCFVVGADNVGSTQLQNIRKQLRGDAVVLMGKNTMMRRAIRGHLENNPA--LEK 77 (245)
T ss_pred Cc-chhhhHHHHHHHHHHHHHHHhcCceEEEeecchhhHHHHHHHHHhcCceeeeechhHHHHHHHHhccCCcHH--HHh
Confidence 56 778899999999999999999999999999999999999999999999999999999999999999877666 999
Q ss_pred ccccccCceEEEEecCChHHHHHHHHhhccCccccCCCCCCceEEECCCCCCCCCCchhhhhhcCcceEEecceEEEecC
Q 021064 81 LIPLLQGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITP 160 (318)
Q Consensus 81 L~~~L~G~~gLiFTn~dp~ev~k~l~~~k~~~~Ak~G~iA~~dVvIp~G~t~~~P~~~s~fqkLgIptki~kG~I~I~~d 160 (318)
+.++++|++||+||++|..++.+.|.++++.+|||+|.|||+||+||+++||++|+++||||+|||||||.+|+|||.+|
T Consensus 78 llp~~~g~vgfvftk~~L~ei~~~i~~n~~~apar~GaiAp~dV~V~~~nTg~~P~ktsfFQaLgIpTKIsrGtiEIlsd 157 (245)
T KOG0815|consen 78 LLPVVKGNVGFVFTKGDLKEIRKEIIENKVGAPARVGAIAPIDVTVPAQNTGLGPEKTSFFQALGIPTKISRGTIEILSD 157 (245)
T ss_pred hccceeeceeEEEEeccHHHHHHHHHhcccccccccCCcCCceEEeccccCCCCcchhhhhhhcCCceeeecceEEeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEeecCcccChhHHHHHHHhCCCccccccceeeeeccCcccCCCcccCChHHHHHHHHHHHHHHHHHhhhcCCCCccch
Q 021064 161 VELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAA 240 (318)
Q Consensus 161 ~~v~k~Ge~v~~~qA~LL~~L~I~p~~~~l~l~~~~~~g~~~~~~~L~i~~e~~~~~~~~a~~~a~~ls~~~~ypt~~s~ 240 (318)
+.++++||||+++||.||.+|||+||.|||.++++||||.+|+||+||||+|++.+.|.+|+++.+++|+.+||||.+++
T Consensus 158 V~lik~GDKVGaSEAtLLnmL~IsPFsyGLvv~qVyDnGsiy~pevLDiteE~l~~~f~~~vs~va~~sL~~~ypt~asv 237 (245)
T KOG0815|consen 158 VQLIKTGDKVGASEATLLNMLNISPFSYGLVVQQVYDNGSIYNPEVLDITEEDLFSKFLSGVSNVASVSLAAGYPTLASV 237 (245)
T ss_pred ceeeccCCccChhHHHHHhhhCCCccccceEEEEEecCCcccChhhcCCcHHHHHHHHHHHHHHHHHHHHhcCCCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHH
Q 021064 241 PHMFVNAY 248 (318)
Q Consensus 241 p~~i~~a~ 248 (318)
||.+.|||
T Consensus 238 ~h~~~n~~ 245 (245)
T KOG0815|consen 238 PHSFINAY 245 (245)
T ss_pred chhhhhcC
Confidence 99999985
No 5
>cd05795 Ribosomal_P0_L10e Ribosomal protein L10 family, P0 and L10e subfamily; composed of eukaryotic 60S ribosomal protein P0 and the archaeal P0 homolog, L10e. P0 or L10e forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. The stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WASP-interacting protein (WIP). These eukaryotic and archaeal P0 sequences have an additional C-terminal domain homologous with acidic proteins P1 and P2.
Probab=100.00 E-value=5.2e-56 Score=393.31 Aligned_cols=175 Identities=54% Similarity=0.875 Sum_probs=169.7
Q ss_pred HHHHHHHHHHHHHHhccCeEEEEEeCCCCcHHHHHHHHHccCCcEEEEEehHHHHHHHhhchhhcCCcccccccccccCc
Q 021064 9 EKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGN 88 (318)
Q Consensus 9 e~K~~~v~el~e~l~~y~~v~iv~~~~v~s~qlq~IR~~Lr~~a~~~vgKNtL~r~AL~~~~~~~~~~~l~~L~~~L~G~ 88 (318)
|||+++|++|++++++|++++|++|+|++++|+++||+.||++++|+|||||||++||+++.+ ..++++.|.++|+|+
T Consensus 1 ~~K~~~v~el~e~l~~~~~v~v~~~~gl~~~ql~~lR~~lr~~~~~~v~KNtL~~~Al~~~~~--~~~~~~~L~~~l~G~ 78 (175)
T cd05795 1 EWKKEYVEKLTELLKSYPKVLIVDADNVGSKQLQKIRRSLRGKAEILMGKNTLIRRALRNLGD--ENPELEKLLPYLKGN 78 (175)
T ss_pred ChHHHHHHHHHHHHHhCCEEEEEEecCCChHHHHHHHHHhhCCCEEEEechHHHHHHHHhccc--ccccHHHHHHHhcCC
Confidence 689999999999999999999999999999999999999998899999999999999999863 334599999999999
Q ss_pred eEEEEecCChHHHHHHHHhhccCccccCCCCCCceEEECCCCCCCCCCchhhhhhcCcceEEecceEEEecCeEEeecCc
Q 021064 89 VGLIFTKGDLKEVKEEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGD 168 (318)
Q Consensus 89 ~gLiFTn~dp~ev~k~l~~~k~~~~Ak~G~iA~~dVvIp~G~t~~~P~~~s~fqkLgIptki~kG~I~I~~d~~v~k~Ge 168 (318)
+||+|||+||++++++|++|++++|||+|+|||+||+||+|||+|+|+++++||+|||||+|++|+|+|.+|++||++||
T Consensus 79 ~~liFt~~dp~~v~k~l~~~~~~~~ar~G~iA~~dvvi~~G~t~~~p~~~~~~~~lgiptki~~G~i~i~~d~~v~k~G~ 158 (175)
T cd05795 79 VGFIFTNGDPFEIRKILEENKVPAPAKPGAIAPCDVVVPAGPTGMPPGPTSFFQALGIPTKIEKGKIEIISDVVVVKKGE 158 (175)
T ss_pred EEEEEECCCHHHHHHHHHHcCCcccccCCCccCceEEEcCCCcCCCCCchHHHHHcCCceEEecCEEEEecCeEEecCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccChhHHHHHHHhCCCc
Q 021064 169 KVGSSEAALLAKLGIRP 185 (318)
Q Consensus 169 ~v~~~qA~LL~~L~I~p 185 (318)
+||++||+||++|||+|
T Consensus 159 ~v~~~~A~lL~~l~i~P 175 (175)
T cd05795 159 KVGASEATLLNKLNIKP 175 (175)
T ss_pred CcCHHHHHHHHHcCCCC
Confidence 99999999999999998
No 6
>cd05796 Ribosomal_P0_like Ribosomal protein L10 family, P0-like protein subfamily; composed of uncharacterized eukaryotic proteins with similarity to the 60S ribosomal protein P0, including the Saccharomyces cerevisiae protein called mRNA turnover protein 4 (MRT4). MRT4 may be involved in mRNA decay. P0 forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. It occupies the L7/L12 stalk of the ribosome. The stalk is known to contain the binding site for elongation factors EF-G and EF-Tu; however, there is disagreement as to whether or not P0 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, P0 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WAS
Probab=100.00 E-value=5.3e-50 Score=351.23 Aligned_cols=162 Identities=27% Similarity=0.405 Sum_probs=156.1
Q ss_pred HHHHHHHHHHHHHHhccCeEEEEEeCCCCcHHHHHHHHHccCCcEEEEEehHHHHHHHhhchhhcCCcccccccccccCc
Q 021064 9 EKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGN 88 (318)
Q Consensus 9 e~K~~~v~el~e~l~~y~~v~iv~~~~v~s~qlq~IR~~Lr~~a~~~vgKNtL~r~AL~~~~~~~~~~~l~~L~~~L~G~ 88 (318)
+||.+++++|+++|++|++++|++++|++++|+++||+.||+. +|+|||||||++||+++.+++..++++.|.++|+|+
T Consensus 1 e~K~~~v~~l~e~l~~y~~v~iv~~~gl~~~ql~~iR~~lr~~-~~~v~KNtl~~~Al~~~~~~~~~~~~~~L~~~l~G~ 79 (163)
T cd05796 1 ELKQKLVENIREAVDKYKYIYVFSVDNMRNNKLKDIRQEWKDS-RFFFGKNKVMQVALGRTPEDEYKPNLHKLSKYLKGQ 79 (163)
T ss_pred ChHHHHHHHHHHHHHhCCEEEEEEecCCCHHHHHHHHHHhcCC-EEEEEchHHHHHHHhhCccccccccHHHHHHHhCCC
Confidence 5899999999999999999999999999999999999999986 999999999999999988777777899999999999
Q ss_pred eEEEEecCChHHHHHHHHhhccCccccCCCCCCceEEECCCCCCCCCCc-hhhhhhcCcceEEecceEEEecCeEEeecC
Q 021064 89 VGLIFTKGDLKEVKEEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKG 167 (318)
Q Consensus 89 ~gLiFTn~dp~ev~k~l~~~k~~~~Ak~G~iA~~dVvIp~G~t~~~P~~-~s~fqkLgIptki~kG~I~I~~d~~v~k~G 167 (318)
+||+|||+||++++++|++|++++|||+|+|||+||+||+|||++.|++ .++||+|||||+|++|+|+|.+|++||++|
T Consensus 80 ~~lift~~dp~~v~k~l~~~~~~~~ar~G~iA~~dvvi~~G~~~~~p~~~~~~~~~lgiptki~~G~I~i~~d~~v~k~G 159 (163)
T cd05796 80 VGLLFTNEPPEEVIEYFDSYSEPDFARAGSIATETVTLPEGPLEQFPHSMEPQLRKLGLPTKLKKGVITLEADYVVCEEG 159 (163)
T ss_pred EEEEEECCCHHHHHHHHHHcCCcccccCCCCCCceEEEeCCCCCCCCCCcchHHHHcCCCeEEeCCEEEEecCcEEECCC
Confidence 9999999999999999999999999999999999999999999988766 699999999999999999999999999999
Q ss_pred cccC
Q 021064 168 DKVG 171 (318)
Q Consensus 168 e~v~ 171 (318)
|+||
T Consensus 160 ~~v~ 163 (163)
T cd05796 160 KVLT 163 (163)
T ss_pred CCCc
Confidence 9986
No 7
>KOG0816 consensus Protein involved in mRNA turnover [RNA processing and modification]
Probab=100.00 E-value=4.9e-49 Score=348.13 Aligned_cols=196 Identities=28% Similarity=0.431 Sum_probs=190.8
Q ss_pred ccccHHHHHHHHHHHHHHHhccCeEEEEEeCCCCcHHHHHHHHHccCCcEEEEEehHHHHHHHhhchhhcCCcccccccc
Q 021064 4 KASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIP 83 (318)
Q Consensus 4 ~kk~~e~K~~~v~el~e~l~~y~~v~iv~~~~v~s~qlq~IR~~Lr~~a~~~vgKNtL~r~AL~~~~~~~~~~~l~~L~~ 83 (318)
.||.+|+|+.+|++|++++++|+++||+++.|||+..+++||.+|+ +++|+||||++|.+||+++.++|+++++++++.
T Consensus 16 ~KKg~e~K~~i~~~ir~~vd~Y~~v~Vf~~~nMRn~~lk~iR~~~k-~sr~f~GknKVm~vaLG~~~~dE~~~~l~klsk 94 (223)
T KOG0816|consen 16 AKKGKEKKEAIVEEIREAVDKYPYVFVFEVPNMRNTTLKEIRQDFK-NSRFFFGKNKVMQVALGRSREDEYKENLYKLSK 94 (223)
T ss_pred hhhhHHHHHHHHHHHHHHHhhCCeEEEEEcCCcchHHHHHHHHHhh-ccceecchhhHHHHHhcCCchhhHHHHHHHhhh
Confidence 4678999999999999999999999999999999999999999999 799999999999999999999999999999999
Q ss_pred cccCceEEEEecCChHHHHHHHHhhccCccccCCCCCCceEEECCCCC-CCCCCchhhhhhcCcceEEecceEEEecCeE
Q 021064 84 LLQGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGLVAPIDVVVPPGNT-GLDPSQTSFFQVLNIPTKINKGTVEIITPVE 162 (318)
Q Consensus 84 ~L~G~~gLiFTn~dp~ev~k~l~~~k~~~~Ak~G~iA~~dVvIp~G~t-~~~P~~~s~fqkLgIptki~kG~I~I~~d~~ 162 (318)
.++|.+||+|||.++.++..+|.+|...+|||+|++||++|+||+||. .++|++.+.+|+||+||++.+|+|++.+|++
T Consensus 95 ll~G~~GLlFTd~~keeV~e~f~sy~~~DyaR~g~vA~~Tv~ip~Gpl~~f~hsmEP~lRklglPt~lk~G~vtL~sdy~ 174 (223)
T KOG0816|consen 95 LLKGSVGLLFTDMSKEEVIEWFRSYVEEDYARAGDVAPETVTIPEGPLEQFAHSMEPQLRKLGLPTKLKKGVVTLLSDYT 174 (223)
T ss_pred hccCceEEEecCCCHHHHHHHHHHHHHHhhhccCCcCcceEeecCcchhhcccccchhhHhhcCceeecCCeEEEecCce
Confidence 999999999999999999999999999999999999999999999997 5889999999999999999999999999999
Q ss_pred EeecCcccChhHHHHHHHhCCCccccccceeeeeccCc
Q 021064 163 LIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGS 200 (318)
Q Consensus 163 v~k~Ge~v~~~qA~LL~~L~I~p~~~~l~l~~~~~~g~ 200 (318)
||++||+++++||+||++||+++.+|++.+.++|+...
T Consensus 175 VCeEG~~Ld~rqA~ILKlfg~kma~Fkl~~~~~w~~s~ 212 (223)
T KOG0816|consen 175 VCEEGDVLDPRQAKILKLFGKKMAKFKLAVKAYWSKSS 212 (223)
T ss_pred eecCCcccCHHHHHHHHHHhHhhHhheEEEEEEEcCcc
Confidence 99999999999999999999999999999999999643
No 8
>COG0244 RplJ Ribosomal protein L10 [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=1.5e-31 Score=237.06 Aligned_cols=171 Identities=25% Similarity=0.320 Sum_probs=163.0
Q ss_pred ccHHHHHHHHHHHHHHHhccCeEEEEEeCCCCcHHHHHHHHHccC-CcEEEEEehHHHHHHHhhchhhcCCccccccccc
Q 021064 6 SKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRG-DSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPL 84 (318)
Q Consensus 6 k~~e~K~~~v~el~e~l~~y~~v~iv~~~~v~s~qlq~IR~~Lr~-~a~~~vgKNtL~r~AL~~~~~~~~~~~l~~L~~~ 84 (318)
..++||.++|++++++|++|++++|+||+|+++.|+++||++||+ +++++|+||||+++||+++. .+.|.++
T Consensus 3 ~~~e~K~~~v~el~e~~~~s~~~~i~dy~Gl~~~ql~~lR~~lr~~g~~lkV~KNtL~~rAl~~~~-------~e~l~~~ 75 (175)
T COG0244 3 LAREWKKELVAELKELIKESPSVVIVDYRGLTVAQLTELRKKLREAGAKLKVVKNTLLRRALEEAG-------LEGLDDL 75 (175)
T ss_pred ccHHHHHHHHHHHHHHHhhCCEEEEEEeCCCcHHHHHHHHHHHHhCCcEEEEEhhHHHHHHHHhcc-------hhhHHHh
Confidence 567999999999999999999999999999999999999999997 59999999999999999885 6679999
Q ss_pred ccCceEEEEecCChHHHHHHHHhhccCccccCCCCCCceEEECCCCCCCCCCchhhhhhcCcceEEecceEEEecCeEEe
Q 021064 85 LQGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI 164 (318)
Q Consensus 85 L~G~~gLiFTn~dp~ev~k~l~~~k~~~~Ak~G~iA~~dVvIp~G~t~~~P~~~s~fqkLgIptki~kG~I~I~~d~~v~ 164 (318)
++|++|++||++||++++|+|.+|..+. |++++.++.+++|. .|++|+.++.|+|.+.+|..+.
T Consensus 76 l~Gp~ai~fs~~dp~~~~K~~~~f~k~~----~~~~~~~~~~~eg~------------~l~~~~v~~~aklp~~~el~~~ 139 (175)
T COG0244 76 LKGPTAIAFSNEDPVAAAKLLKDFAKEA----GDKAPIKGGVPEGK------------VLGAAEVIALAKLPSKEELVVM 139 (175)
T ss_pred ccCCeEEEEecCCHHHHHHHHHHHhhhh----cccceEEEEEecCc------------ccCHHHHHHHhcCCcHHHHHHH
Confidence 9999999999999999999999887766 99999999999998 5799999999999999999999
Q ss_pred ecCcccChhHHHHHHHhCCCccccccceeeeeccCc
Q 021064 165 RKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGS 200 (318)
Q Consensus 165 k~Ge~v~~~qA~LL~~L~I~p~~~~l~l~~~~~~g~ 200 (318)
..|+.+.|.. .++..|++.|.++++.+.++|++|.
T Consensus 140 l~g~~~ap~~-~~~~~L~a~~~~~~~~~~a~~~~g~ 174 (175)
T COG0244 140 LLGVLQAPAT-KLLRALKAVPDKVGLKLLAAYEKGV 174 (175)
T ss_pred HHHhhHhhHH-HHHHHHhccHHHHhhHHHHhhccCC
Confidence 9999999999 9999999999999999999999885
No 9
>cd00379 Ribosomal_L10_P0 Ribosomal protein L10 family; composed of the large subunit ribosomal protein called L10 in bacteria, P0 in eukaryotes, and L10e in archaea, as well as uncharacterized P0-like eukaryotic proteins. In all three kingdoms, L10 forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. The N-terminal domain (NTD) of L10 interacts with L11 protein and forms the base of the L7/L12 stalk, while the extended C-terminal helix binds to two or three dimers of the NTD of L7/L12 (L7 and L12 are identical except for an acetylated N-terminus). The L7/L12 stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been sho
Probab=99.90 E-value=1.6e-24 Score=186.75 Aligned_cols=122 Identities=33% Similarity=0.472 Sum_probs=115.3
Q ss_pred HHHHHHHHHHHHHHhccCeEEEEEeCCCCcHHHHHHHHHccCC-cEEEEEehHHHHHHHhhchhhcCCcccccccccccC
Q 021064 9 EKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGD-SVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQG 87 (318)
Q Consensus 9 e~K~~~v~el~e~l~~y~~v~iv~~~~v~s~qlq~IR~~Lr~~-a~~~vgKNtL~r~AL~~~~~~~~~~~l~~L~~~L~G 87 (318)
++|.++++++++++++|+.+++++|+|+++++++++|++||+. ++++|+|||||++||+++. ++.+.++|+|
T Consensus 1 ~~K~~~v~~l~~~l~~~~~v~v~~~~~l~~~~~~~lR~~l~~~~~~~~v~KNtl~~~Al~~t~-------~~~~~~~l~G 73 (155)
T cd00379 1 EKKEELVEELKELLKKYKSVVVVDYRGLTVAQLTELRKELRESGAKLKVGKNTLMRRALKGTG-------FEELKPLLKG 73 (155)
T ss_pred CchHHHHHHHHHHHHhCCEEEEEecCCCcHHHHHHHHHHHHHcCCEEEEEehHHHHHHHcCCC-------ccchhhhCcC
Confidence 5799999999999999999999999999999999999999975 8999999999999999985 6788899999
Q ss_pred ceEEEEecCChHHHHHHHHhhccC---ccccCCCCCCceEEECCCCCCCCCCch
Q 021064 88 NVGLIFTKGDLKEVKEEVAKYKVG---APARVGLVAPIDVVVPPGNTGLDPSQT 138 (318)
Q Consensus 88 ~~gLiFTn~dp~ev~k~l~~~k~~---~~Ak~G~iA~~dVvIp~G~t~~~P~~~ 138 (318)
++|++||++||.++.++|.+++.. .++|+|.++ .+|+.|+|.+.+++.|.
T Consensus 74 ~~~~~f~~~~~~~~~k~~~~~~k~~~~~~~k~g~~~-~~v~~~~~~~~l~~lp~ 126 (155)
T cd00379 74 PTALAFTNEDPVEVAKVLKDFAKENKKLFAKGGVVA-GKVLDPAGVTALAKLPS 126 (155)
T ss_pred CEEEEEeCCChHHHHHHHHHHHHhCCCceEEEEEEc-CEecCHHHHHHHhcCCC
Confidence 999999999999999999999888 899999999 99999999998877773
No 10
>PF00466 Ribosomal_L10: Ribosomal protein L10; InterPro: IPR001790 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. On the basis of sequence similarities the following prokaryotic and eukaryotic ribosomal proteins can be grouped: Bacterial 50S ribosomal protein L10; Archaebacterial acidic ribosomal protein P0 homologue (L10E); Eukaryotic 60S ribosomal protein P0 (L10E). This entry represents the ribosomal protein L10P family, with includes the above mentioned ribosomal proteins.; GO: 0042254 ribosome biogenesis, 0005622 intracellular; PDB: 3A1Y_G 3D5D_J 3PYT_I 3PYV_I 3D5B_J 3PYO_I 3PYR_I 3MS1_I 3MRZ_I 1VQ9_G ....
Probab=99.87 E-value=4.2e-22 Score=160.40 Aligned_cols=96 Identities=32% Similarity=0.485 Sum_probs=90.7
Q ss_pred cHHHHHHHHHHHHHHHhccCeEEEEEeCCCCcHHHHHHHHHccCC-cEEEEEehHHHHHHHhhchhhcCCcccc-ccccc
Q 021064 7 KAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGD-SVVLMGKNTMMKRTIRMHAEKTGNTAFL-NLIPL 84 (318)
Q Consensus 7 ~~e~K~~~v~el~e~l~~y~~v~iv~~~~v~s~qlq~IR~~Lr~~-a~~~vgKNtL~r~AL~~~~~~~~~~~l~-~L~~~ 84 (318)
++++|+++++++++.|++|+.+++++|+|++++|++++|++||+. ++++|+|||||++||+++. .+ .|.++
T Consensus 2 ~~~~K~~~v~~~~~~l~~~~~v~v~~~~~l~~~~~~~lR~~l~~~~~~~~v~KN~l~~~Al~~~~-------~~~~l~~~ 74 (100)
T PF00466_consen 2 TKEKKEEIVEELKELLKKSKYVIVVDYNGLSANQLQELRKELRKKGGKFKVVKNTLMKKALKNTG-------FEEALSPL 74 (100)
T ss_dssp SCHHHHHHHHHHHHHHHCSSEEEEEECTTSCHHHHHHHHHHHHHHTEEEEECSHHHHHHHHHHHH-------TSSSSSCC
T ss_pred cHHHHHHHHHHHHHHHHhCCEEEEEEeCCCCHHHHHHHHHHHHhcCcEEEEecHHHHHHHHhcCc-------cccCcccc
Confidence 589999999999999999999999999999999999999999975 9999999999999999986 44 68999
Q ss_pred ccCceEEEEecCChHHHHHHHHhhc
Q 021064 85 LQGNVGLIFTKGDLKEVKEEVAKYK 109 (318)
Q Consensus 85 L~G~~gLiFTn~dp~ev~k~l~~~k 109 (318)
|+|++|++||++||.+++++|.+|.
T Consensus 75 l~G~~~~if~~~d~~~~~k~l~~~~ 99 (100)
T PF00466_consen 75 LKGPTALIFSNEDPFEIAKILKKFA 99 (100)
T ss_dssp TSSSEEEEEESSSHHHHHHHHHHST
T ss_pred ccCCEEEEEECCCHHHHHHHHHHhc
Confidence 9999999999999999999998774
No 11
>PRK00099 rplJ 50S ribosomal protein L10; Reviewed
Probab=99.83 E-value=1.6e-20 Score=165.76 Aligned_cols=97 Identities=23% Similarity=0.296 Sum_probs=92.0
Q ss_pred cHHHHHHHHHHHHHHHhccCeEEEEEeCCCCcHHHHHHHHHccC-CcEEEEEehHHHHHHHhhchhhcCCcccccccccc
Q 021064 7 KAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRG-DSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLL 85 (318)
Q Consensus 7 ~~e~K~~~v~el~e~l~~y~~v~iv~~~~v~s~qlq~IR~~Lr~-~a~~~vgKNtL~r~AL~~~~~~~~~~~l~~L~~~L 85 (318)
+|++|+++++++++++++|+.+++++|+|++++|+++||++||+ +++++|+|||||++|++++. ++.|.++|
T Consensus 2 ~r~~K~~~v~~l~~~l~~~~~v~v~~~~gl~~~~~~~lR~~lr~~~~~~~V~KNtL~~~Al~~~~-------~~~l~~~l 74 (172)
T PRK00099 2 NREEKKEIVAELAEKLKKAQSAVVADYRGLTVAQMTELRKKLREAGVEYKVVKNTLARRALEGTG-------FEGLDDLL 74 (172)
T ss_pred CHHHHHHHHHHHHHHHHhCCEEEEEecCCCcHHHHHHHHHHHHHcCCEEEEehhHHHHHHHhcCC-------chhhhhhC
Confidence 48899999999999999999999999999999999999999997 58999999999999999874 88999999
Q ss_pred cCceEEEEecCChHHHHHHHHhhcc
Q 021064 86 QGNVGLIFTKGDLKEVKEEVAKYKV 110 (318)
Q Consensus 86 ~G~~gLiFTn~dp~ev~k~l~~~k~ 110 (318)
+|++|++||++||.++++++.+|..
T Consensus 75 ~G~~al~fs~~d~~~~~k~l~~f~K 99 (172)
T PRK00099 75 KGPTAIAFSYEDPVAAAKVLKDFAK 99 (172)
T ss_pred cCCeEEEEeCCChHHHHHHHHHHHh
Confidence 9999999999999999999988854
No 12
>cd05797 Ribosomal_L10 Ribosomal protein L10 family, L10 subfamily; composed of bacterial 50S ribosomal protein and eukaryotic mitochondrial 39S ribosomal protein, L10. L10 occupies the L7/L12 stalk of the ribosome. The N-terminal domain (NTD) of L10 interacts with L11 protein and forms the base of the L7/L12 stalk, while the extended C-terminal helix binds to two or three dimers of the NTD of L7/L12 (L7 and L12 are identical except for an acetylated N-terminus). The L7/L12 stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WASP-in
Probab=99.83 E-value=2.3e-20 Score=162.13 Aligned_cols=98 Identities=27% Similarity=0.338 Sum_probs=92.6
Q ss_pred cHHHHHHHHHHHHHHHhccCeEEEEEeCCCCcHHHHHHHHHccCC-cEEEEEehHHHHHHHhhchhhcCCcccccccccc
Q 021064 7 KAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGD-SVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLL 85 (318)
Q Consensus 7 ~~e~K~~~v~el~e~l~~y~~v~iv~~~~v~s~qlq~IR~~Lr~~-a~~~vgKNtL~r~AL~~~~~~~~~~~l~~L~~~L 85 (318)
.+++|+++++++++++++|+.+++++|+|++++|++++|++||+. ++++|+||||+++|+++++ ++.+.++|
T Consensus 1 ~~~~K~~~v~~l~~~l~~~~~v~v~~~~gl~~~~~~~lR~~lr~~~~~~~V~KNtL~~~Al~~t~-------~~~l~~~l 73 (157)
T cd05797 1 NREKKEEIVAELKEKLKEAKSVVVADYRGLTVAQLTELRKELREAGVKLKVVKNTLAKRALEGTG-------FEDLDDLL 73 (157)
T ss_pred ChHHHHHHHHHHHHHHHhCCEEEEEecCCCcHHHHHHHHHHHHHcCCEEEEehhHHHHHHHhcCC-------chhhHhhC
Confidence 478999999999999999999999999999999999999999974 8999999999999999885 78899999
Q ss_pred cCceEEEEecCChHHHHHHHHhhccC
Q 021064 86 QGNVGLIFTKGDLKEVKEEVAKYKVG 111 (318)
Q Consensus 86 ~G~~gLiFTn~dp~ev~k~l~~~k~~ 111 (318)
+|++|++||++||.+++++|.+|...
T Consensus 74 ~G~~al~f~~~d~~~~~k~l~~f~k~ 99 (157)
T cd05797 74 KGPTAIAFSEEDPVAAAKVLKDFAKE 99 (157)
T ss_pred cCCEEEEEeCCChHHHHHHHHHHHHh
Confidence 99999999999999999999988664
No 13
>PRK04019 rplP0 acidic ribosomal protein P0; Validated
Probab=99.82 E-value=2.2e-20 Score=180.62 Aligned_cols=229 Identities=15% Similarity=0.136 Sum_probs=187.8
Q ss_pred HHHHHHHHHHHhccCeEEEEE-------eCCCCcHHHHHHHHHccCCcEEEEEehHH--HHHHHhhchhhcCC-cc----
Q 021064 12 IAYDAKLCQLLEEYTQILVAA-------ADNVGSNQLQNIRRGLRGDSVVLMGKNTM--MKRTIRMHAEKTGN-TA---- 77 (318)
Q Consensus 12 ~~~v~el~e~l~~y~~v~iv~-------~~~v~s~qlq~IR~~Lr~~a~~~vgKNtL--~r~AL~~~~~~~~~-~~---- 77 (318)
...+.+||..+.....+++.. +.+.....+.+|-..|+|..-+.+.+... +.+.+.+.....+. .|
T Consensus 35 ~~ql~~lR~~lr~~~~~~v~KNtL~~~Al~~~~~~~~~~L~~~l~G~~alift~~dp~~v~k~l~~~~~~~~ak~G~iA~ 114 (330)
T PRK04019 35 ARQLQEIRRKLRGKAELKVSKNTLIKRALEEAGEEDLEKLEDYLEGQVALIFTNMNPFKLYKLLEKSKTPAPAKPGDIAP 114 (330)
T ss_pred HHHHHHHHHHHHcCCEEEEEehHHHHHHHHhcCcccHHHHHhhccCCEEEEEECCCHHHHHHHHHHcCCcccCCCCCCCC
Confidence 356788899888764444442 12222133788888999887777765443 34445544322221 11
Q ss_pred cccccccccCceEEEEecCChHHHHHHHHhhccCccccCCC--CCCceEEECCCCCCCCCCchhhhhhcCcceEEecceE
Q 021064 78 FLNLIPLLQGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGL--VAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTV 155 (318)
Q Consensus 78 l~~L~~~L~G~~gLiFTn~dp~ev~k~l~~~k~~~~Ak~G~--iA~~dVvIp~G~t~~~P~~~s~fqkLgIptki~kG~I 155 (318)
.+-..+ .|+| +.+|+.+...|.+.+.|++++.|. |+++++++++|++ ++|++.+.||+|||++...+++|
T Consensus 115 ~divip--~G~t-----~~~P~~~~~~l~~lgipt~i~~G~I~i~~~~~v~~~G~~-v~~~~a~lL~~LgI~p~~~~~~i 186 (330)
T PRK04019 115 EDIVVP--AGPT-----GFPPGPILSELQKLGIPARIQKGKIVIKKDTVVAKAGEV-ISPELANVLQKLGIKPIEVGLDL 186 (330)
T ss_pred CeEEEc--CCCC-----CCCCcccHHHHHHcCCCeEecCCEEEEecCeEEecCCCC-cCHHHHHHHHHcCCCHHHhhhHH
Confidence 111222 4555 789999999999999999999999 9999999999999 99999999999999999999999
Q ss_pred EEecCeEEeecCcccChhHHHHHHHhCCCccccccceeeeeccCcccCCCcccCChHHHHHHHHHHHHHHHHHhhhcCCC
Q 021064 156 EIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYP 235 (318)
Q Consensus 156 ~I~~d~~v~k~Ge~v~~~qA~LL~~L~I~p~~~~l~l~~~~~~g~~~~~~~L~i~~e~~~~~~~~a~~~a~~ls~~~~yp 235 (318)
..+...|..++++.+ +|.|.++..++..+|.++..++.+.-.+|++.+...|.+|+++|++||+++|||
T Consensus 187 -----~a~~~~G~~~~~~~l------~i~~e~~~~~i~~A~~~a~~Ls~~~~~pt~~tl~~~i~kA~~~a~aLa~~~~~~ 255 (330)
T PRK04019 187 -----KAAYEDGVIYTPEVL------AIDEEKYRSDIQEAAQNAFNLAVNAAYPTPETLETLIQKAFREAKALAVEAGIV 255 (330)
T ss_pred -----HHHHhcCCccCHHHc------cCCHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 788889999999887 699999999999999999888888889999999999999999999999999999
Q ss_pred CccchhhHHHHHHHHHHhhhhhcC
Q 021064 236 TLAAAPHMFVNAYKNVVAVALATE 259 (318)
Q Consensus 236 t~~s~p~~i~~a~~~a~ala~~~~ 259 (318)
|+++++++|.+|+++++||+.+++
T Consensus 256 t~e~~~~il~kA~~~~~ala~~~~ 279 (330)
T PRK04019 256 TPETADDILSKAVAQALALAAALA 279 (330)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999976
No 14
>PTZ00240 60S ribosomal protein P0; Provisional
Probab=98.70 E-value=1.4e-07 Score=91.37 Aligned_cols=218 Identities=12% Similarity=0.120 Sum_probs=163.6
Q ss_pred HHHHHHHHHHhccCeEEEEEe-----------CCCCcHHHHHHH-------HHccCCcEEEEEehHHHHH--HHhhchhh
Q 021064 13 AYDAKLCQLLEEYTQILVAAA-----------DNVGSNQLQNIR-------RGLRGDSVVLMGKNTMMKR--TIRMHAEK 72 (318)
Q Consensus 13 ~~v~el~e~l~~y~~v~iv~~-----------~~v~s~qlq~IR-------~~Lr~~a~~~vgKNtL~r~--AL~~~~~~ 72 (318)
..+++||..+.....+++-.- ++.....++++- ..++|+.-+.|.+-..... -+.+....
T Consensus 36 ~qlq~IR~~lrg~a~~~~GKNtlm~~AL~~~~~~~~~~~~~~ll~~~~~~~~~l~GnvgliFTn~~p~ev~~~l~~~k~~ 115 (323)
T PTZ00240 36 QQVHDVRRALRGKAEFVMGKKTLQAKIVEKRAQAKKASAEAKLFNDQCEEKNLLSGNTGLIFTNNEVQEITSVLDSHRVK 115 (323)
T ss_pred HHHHHHHHHhhCCcEEEEecHHHHHHHHhhccccccchhHHHHhhhhccccccccCCEEEEEeCCCHHHHHHHHHHcCCc
Confidence 467788888887666655421 111123366663 6778877777766655433 33333222
Q ss_pred cCC-cc----cccccccccCceEEEEecCChHHHHHHHHhhccCccccCCC--CCCceEEECCCCCCCCCCchhhhhhcC
Q 021064 73 TGN-TA----FLNLIPLLQGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGL--VAPIDVVVPPGNTGLDPSQTSFFQVLN 145 (318)
Q Consensus 73 ~~~-~~----l~~L~~~L~G~~gLiFTn~dp~ev~k~l~~~k~~~~Ak~G~--iA~~dVvIp~G~t~~~P~~~s~fqkLg 145 (318)
.+. .| .+-..+ .|+| +.+|. ....|.+...|+....|. |..+.+++++|.. ++|++...|++||
T Consensus 116 a~AraG~IAp~dVvvp--aG~T-----~~~P~-~~s~fq~LGIpTkI~kGkIeI~~d~~v~k~Ge~-V~~~~A~LL~~L~ 186 (323)
T PTZ00240 116 APARVGAIAPCDVIVP--AGST-----GMEPT-QTSFFQALNIATKIAKGMVEIVTEKKVLSVGDK-VDNSTATLLQKLN 186 (323)
T ss_pred ccccCCCCCCceEEEC--CCCC-----CCCCc-chHHHHHcCCCeEecCcEEEEecCeEEecCCCC-cCHHHHHHHHHcC
Confidence 111 11 112222 4665 57887 488999999999999998 7788889999999 9999999999999
Q ss_pred cceEEecceEEEecCeEEeecCcccChhHHHHHHHhCCCccccccceeeeeccCcccCCCcccCChHHHHHHHHHHHHHH
Q 021064 146 IPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMV 225 (318)
Q Consensus 146 Iptki~kG~I~I~~d~~v~k~Ge~v~~~qA~LL~~L~I~p~~~~l~l~~~~~~g~~~~~~~L~i~~e~~~~~~~~a~~~a 225 (318)
|.+---+-+| ..+...|...+++. |+|....|.-++..++.+-..++.+.-++|++.+.-.+.+|++++
T Consensus 187 IkP~~~gl~l-----~~vyd~g~i~~~~v------L~i~~e~~~~~~~~a~~~~~~lsl~~~~pt~~si~~~i~~a~~~~ 255 (323)
T PTZ00240 187 ISPFYYQVEV-----LSVWDRGVLFTRED------LSMTEDVVEKMLMEGLSNVAAMSLGAGIPTAATIGPMLVDAFKNL 255 (323)
T ss_pred CCeEEEEEEE-----EEEEeCCeecCHHH------cCCCHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHH
Confidence 9998887777 45666777778754 568888888888888888778889999999999999999999999
Q ss_pred HHHhhhcCCCCccchhhHHHHHHHH
Q 021064 226 TALALAISYPTLAAAPHMFVNAYKN 250 (318)
Q Consensus 226 ~~ls~~~~ypt~~s~p~~i~~a~~~ 250 (318)
++||++++|+++++.+..+.+|--.
T Consensus 256 ~alav~~~~~~~~~~~~~~~~A~~~ 280 (323)
T PTZ00240 256 LAVSVATSYEFEEHNGKELREAALE 280 (323)
T ss_pred HHHhhhcCcCChhhHHHHHhhhCHH
Confidence 9999999999999999999888433
No 15
>PTZ00135 60S acidic ribosomal protein P0; Provisional
Probab=98.39 E-value=2.1e-06 Score=82.84 Aligned_cols=222 Identities=14% Similarity=0.096 Sum_probs=160.0
Q ss_pred HHHHHHHHHHHhccCeEEEEE-------eCCCC--cHHHHHHHHHccCCcEEEEEehHHH--HHHHhhchhhcC-Ccc--
Q 021064 12 IAYDAKLCQLLEEYTQILVAA-------ADNVG--SNQLQNIRRGLRGDSVVLMGKNTMM--KRTIRMHAEKTG-NTA-- 77 (318)
Q Consensus 12 ~~~v~el~e~l~~y~~v~iv~-------~~~v~--s~qlq~IR~~Lr~~a~~~vgKNtL~--r~AL~~~~~~~~-~~~-- 77 (318)
.+.+.+||..+.....+++.. +++.. ...+.+|-..|+|+.-+.+.+.... ++.+.+.....+ +.|
T Consensus 37 s~ql~~iR~~LR~~a~~~vgKNTL~r~AL~~~~~~~~~l~~L~~~LkG~~gliFTn~dp~ev~k~l~~~k~~~~AKaG~i 116 (310)
T PTZ00135 37 SKQMQDIRRSLRGKAELLMGKNTLIRKALKQRLEELPELEKLLPHVKGNVGFVFTKDDLFEVKPVILENKVPAPARAGVI 116 (310)
T ss_pred HHHHHHHHHHHhcCCEEEEEehHHHHHHHhhCcccccChHHHHhhccCCEEEEEECCCHHHHHHHHHHcCCccccccCCC
Confidence 356788899888765544432 11211 1247788889998877777755443 333443321111 111
Q ss_pred --cccccccccCceEEEEecCChHHHHHHHHhhccCccccCCC--CCCceEEECCCCCCCCCCchhhhhhcCcceEEecc
Q 021064 78 --FLNLIPLLQGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGL--VAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKG 153 (318)
Q Consensus 78 --l~~L~~~L~G~~gLiFTn~dp~ev~k~l~~~k~~~~Ak~G~--iA~~dVvIp~G~t~~~P~~~s~fqkLgIptki~kG 153 (318)
.+-..+ .|+| ..+|.. ...|.+...|+...-|. |..+.+++++|.. ++|++...|+.|||..---+-
T Consensus 117 Ap~dv~ip--~G~t-----~~~P~~-~~~fq~LgipTkI~kG~I~I~~d~~v~k~Ge~-v~~~~A~LL~~L~I~p~~~~l 187 (310)
T PTZ00135 117 APIDVVIP--AGPT-----GMDPSQ-TSFFQALGIATKIVKGQIEITNEVHLIKEGQK-VGASQAVLLQKLNIKPFSYGL 187 (310)
T ss_pred CCceEEEc--CCCC-----CCCcch-hhHHHHcCCceEecCCeEEEecCeEEecCCCC-cCHHHHHHHHHcCCCeEEEEE
Confidence 111122 4554 678875 78999999999999998 6788889999999 999999999999999988877
Q ss_pred eEEEecCeEEeecCcccChhHHHHHHHhCCCccccccceeeeeccCcccCCCcccCChHHHHHHHHHHHHHHHHHhhhcC
Q 021064 154 TVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAIS 233 (318)
Q Consensus 154 ~I~I~~d~~v~k~Ge~v~~~qA~LL~~L~I~p~~~~l~l~~~~~~g~~~~~~~L~i~~e~~~~~~~~a~~~a~~ls~~~~ 233 (318)
++ ..+...|...+++. |+|....+.-++...+.+-..++.+.-.+++..+...|.+|++++++||++++
T Consensus 188 ~~-----~~~yd~g~~~~~~v------L~i~~e~~~~~~~~~~~~i~als~aag~pt~~s~p~~ia~a~k~~~a~a~~~~ 256 (310)
T PTZ00135 188 EV-----LSIYDNGSIYDAKV------LDITDEDIVAKFQEGVQNVAAISLAAGYPTEASAPHSILNAFKNLAAIGLESG 256 (310)
T ss_pred EE-----EEEEECCeEeCHHH------cCCCHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhhcC
Confidence 77 34555666666654 55777777767776666655566666678999999999999999999999999
Q ss_pred CCCccchhhHHHHHHHHHHh
Q 021064 234 YPTLAAAPHMFVNAYKNVVA 253 (318)
Q Consensus 234 ypt~~s~p~~i~~a~~~a~a 253 (318)
|+.+++.+.....|.-.+.+
T Consensus 257 ~~~~~~~~~~~~~a~~~~~~ 276 (310)
T PTZ00135 257 FTFPLAEKIKEALANPSAAA 276 (310)
T ss_pred CCChhhHHHHHhhcCchhhc
Confidence 99999999998887665554
No 16
>KOG4241 consensus Mitochondrial ribosomal protein L10 [Translation, ribosomal structure and biogenesis]
Probab=96.86 E-value=0.0032 Score=57.41 Aligned_cols=87 Identities=21% Similarity=0.253 Sum_probs=77.6
Q ss_pred HHHHHHHHhccCeEEEEEeCCCCcHHHHHHHHHccC-CcEEEEEehHHHHHHHhhchhhcCCcccccccccccCceEEEE
Q 021064 15 DAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRG-DSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIF 93 (318)
Q Consensus 15 v~el~e~l~~y~~v~iv~~~~v~s~qlq~IR~~Lr~-~a~~~vgKNtL~r~AL~~~~~~~~~~~l~~L~~~L~G~~gLiF 93 (318)
..|+...++++..+.++.+--+++.++--.|.+||. +.+|+..-|++++.+++++. ++.|.+.+.||.+++|
T Consensus 79 ~re~~~v~~~~R~~Avcq~~~v~a~d~~~~r~QLrk~ni~~ksygnkIlk~~~~~t~-------y~~l~plfvgnh~ill 151 (245)
T KOG4241|consen 79 LREDWMVREEFRVMAVCQFLPVPARDLWFARNQLRKKNIEFKSYGNKILKKIFDKTP-------YSSLNPLFVGNHAILL 151 (245)
T ss_pred HHHHHHHHhhhhheeeeecccCcHHHHHHHHHHHHhccchhhhchHHHHHHHHhcCc-------hhhhhhheeccceEEE
Confidence 446677889999999999999999999999999996 57999999999999999886 8899999999999999
Q ss_pred ecCChHHHHHHHHhhc
Q 021064 94 TKGDLKEVKEEVAKYK 109 (318)
Q Consensus 94 Tn~dp~ev~k~l~~~k 109 (318)
.. |+.++++++...+
T Consensus 152 ~~-d~~kik~~lri~r 166 (245)
T KOG4241|consen 152 AK-DISKIKSILRITR 166 (245)
T ss_pred cC-ChHHHHHHHHHHh
Confidence 76 6888888886553
No 17
>cd05795 Ribosomal_P0_L10e Ribosomal protein L10 family, P0 and L10e subfamily; composed of eukaryotic 60S ribosomal protein P0 and the archaeal P0 homolog, L10e. P0 or L10e forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. The stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WASP-interacting protein (WIP). These eukaryotic and archaeal P0 sequences have an additional C-terminal domain homologous with acidic proteins P1 and P2.
Probab=93.22 E-value=0.42 Score=42.46 Aligned_cols=128 Identities=16% Similarity=0.223 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHhccCeEEEEE-------eCCCC--cHHHHHHHHHccCCcEEEEEehHHH--HHHHhhchhhcCC-cc--
Q 021064 12 IAYDAKLCQLLEEYTQILVAA-------ADNVG--SNQLQNIRRGLRGDSVVLMGKNTMM--KRTIRMHAEKTGN-TA-- 77 (318)
Q Consensus 12 ~~~v~el~e~l~~y~~v~iv~-------~~~v~--s~qlq~IR~~Lr~~a~~~vgKNtL~--r~AL~~~~~~~~~-~~-- 77 (318)
...+.+||..+.+...+++.. +.+.. ...+..+...|+|..-+.+.+.... .+.+.+.....+. .|
T Consensus 30 ~~ql~~lR~~lr~~~~~~v~KNtL~~~Al~~~~~~~~~~~~L~~~l~G~~~liFt~~dp~~v~k~l~~~~~~~~ar~G~i 109 (175)
T cd05795 30 SKQLQKIRRSLRGKAEILMGKNTLIRRALRNLGDENPELEKLLPYLKGNVGFIFTNGDPFEIRKILEENKVPAPAKPGAI 109 (175)
T ss_pred hHHHHHHHHHhhCCCEEEEechHHHHHHHHhcccccccHHHHHHHhcCCEEEEEECCCHHHHHHHHHHcCCcccccCCCc
Confidence 356778888888764444431 11221 1137788889998877778765443 3445544322221 11
Q ss_pred --cccccccccCceEEEEecCChHHHHHHHHhhccCccccCCC--CCCceEEECCCCCCCCCCchhhhhhcCcce
Q 021064 78 --FLNLIPLLQGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGL--VAPIDVVVPPGNTGLDPSQTSFFQVLNIPT 148 (318)
Q Consensus 78 --l~~L~~~L~G~~gLiFTn~dp~ev~k~l~~~k~~~~Ak~G~--iA~~dVvIp~G~t~~~P~~~s~fqkLgIpt 148 (318)
.+-..+ .|+++ .+|...- .|.+...|+..+.|. |..+.+++.+|.. ++|++...|+.|||.+
T Consensus 110 A~~dvvi~--~G~t~-----~~p~~~~-~~~~lgiptki~~G~i~i~~d~~v~k~G~~-v~~~~A~lL~~l~i~P 175 (175)
T cd05795 110 APCDVVVP--AGPTG-----MPPGPTS-FFQALGIPTKIEKGKIEIISDVVVVKKGEK-VGASEATLLNKLNIKP 175 (175)
T ss_pred cCceEEEc--CCCcC-----CCCCchH-HHHHcCCceEEecCEEEEecCeEEecCCCC-cCHHHHHHHHHcCCCC
Confidence 111222 56664 4555544 899999999999998 7888899999999 9999999999999964
No 18
>PF00428 Ribosomal_60s: 60s Acidic ribosomal protein; InterPro: IPR001813 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The 60S acidic ribosomal protein plays an important role in the elongation step of protein synthesis. This family includes archaebacterial L12, eukaryotic P0, P1 and P2 []. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Alt a 6, Alt a 12, Cla h 3, Cla h 4 and Cla h 12.; GO: 0003735 structural constituent of ribosome, 0006414 translational elongation, 0005622 intracellular, 0005840 ribosome; PDB: 3A1Y_C 3N2D_B 2LBF_A 3IZS_t 3IZR_t 1S4J_A 2JDL_C 2W1O_B 1S4H_A 2ZKR_g.
Probab=88.92 E-value=0.13 Score=40.68 Aligned_cols=43 Identities=21% Similarity=0.096 Sum_probs=37.2
Q ss_pred CCCccchhhHHHHHHHHHHhhhhhcCccCCChHhHHHHhhcCC
Q 021064 234 YPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLAVCI 276 (318)
Q Consensus 234 ypt~~s~p~~i~~a~~~a~ala~~~~~~~~~~~~~~~~l~~~~ 276 (318)
|||.++++++|.+++.+..+..+.+.+.+.+..+++++|+++.
T Consensus 1 ~pT~~~i~~vl~aag~~v~~~~~~~~~~~l~~~~i~~li~~~~ 43 (88)
T PF00428_consen 1 EPTAENIKKVLKAAGVEVEAIWLELFAKALEGKDIKELIANGS 43 (88)
T ss_dssp S-SCCCHHHHHHHHTHHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCchhHHHHHHHHHHHcCCcHHHHHhccc
Confidence 7999999999999999888888888888888889999998764
No 19
>PF07697 7TMR-HDED: 7TM-HD extracellular; InterPro: IPR011624 This entry represents the extracellular domain of the 7TM-HD (7TM Receptors with HD hydrolase) protein family []. These proteins are known or predicted, to posses metal-dependent phospohydrolase activity.
Probab=83.74 E-value=0.7 Score=41.30 Aligned_cols=27 Identities=33% Similarity=0.621 Sum_probs=24.0
Q ss_pred EecceEEEecCeEEeecCcccChhHHHHHHHhCC
Q 021064 150 INKGTVEIITPVELIRKGDKVGSSEAALLAKLGI 183 (318)
Q Consensus 150 i~kG~I~I~~d~~v~k~Ge~v~~~qA~LL~~L~I 183 (318)
|.+|. .++++|++||+++..+|+.||+
T Consensus 193 V~~Ge-------~IV~kGe~VT~e~~~~L~~l~~ 219 (222)
T PF07697_consen 193 VKKGE-------VIVRKGEIVTEEQYEKLESLGL 219 (222)
T ss_pred ccCCC-------EEecCCcEeCHHHHHHHHHcCC
Confidence 56666 4999999999999999999986
No 20
>COG2117 Predicted subunit of tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=72.22 E-value=6 Score=35.41 Aligned_cols=75 Identities=24% Similarity=0.310 Sum_probs=51.5
Q ss_pred CeEEeecCcccChhHHHHHHHhCCCcc----ccccceeeeeccC----cccCCCcccCChHHHHHHHHHHHHHHHHHhhh
Q 021064 160 PVELIRKGDKVGSSEAALLAKLGIRPF----SYGLVVQSVYENG----SVYSPEVLDLSEDDLVEKFASSVSMVTALALA 231 (318)
Q Consensus 160 d~~v~k~Ge~v~~~qA~LL~~L~I~p~----~~~l~l~~~~~~g----~~~~~~~L~i~~e~~~~~~~~a~~~a~~ls~~ 231 (318)
|+-++-.|-|=|+=.|-+|++||+.|- .||+.-.+-|-.. .-|+-++|.++.+- ...|..+.+|
T Consensus 2 ~v~vLfSGGKDSSLaA~iL~klgyev~LVTvnFGv~d~~k~A~~tA~~lgF~h~vl~Ldr~i--------le~A~em~ie 73 (198)
T COG2117 2 DVYVLFSGGKDSSLAALILDKLGYEVELVTVNFGVLDSWKYARETAAILGFPHEVLQLDREI--------LEDAVEMIIE 73 (198)
T ss_pred ceEEEecCCCchhHHHHHHHHhCCCcEEEEEEeccccchhhHHHHHHHhCCCcceeccCHHH--------HHHHHHHHHh
Confidence 345667788888888999999999984 3443333333211 23788888888554 4577889999
Q ss_pred cCCCCccchhhH
Q 021064 232 ISYPTLAAAPHM 243 (318)
Q Consensus 232 ~~ypt~~s~p~~ 243 (318)
=|||+.+ +.|+
T Consensus 74 dg~P~~a-Iq~i 84 (198)
T COG2117 74 DGYPRNA-IQYI 84 (198)
T ss_pred cCCCchH-HHHH
Confidence 9999864 4444
No 21
>TIGR03602 streptolysinS bacteriocin protoxin, streptolysin S family. Members of this family are bacteriocin precursors. These small, ribosomally produced polypeptide precursors are extensively processed post-translationally. This family belongs to a class of heterocycle-containing bacteriocins, including streptolysin S from Streptococcus pyogenes, and related bacteriocins from Streptococcus iniae and Clostridium botulinum. Streptolysin S is hemolytic. Bacteriocin genes in general are small and highly diverse, with odd sequence composition, and are easily missed by many gene-finding programs.
Probab=65.63 E-value=2.9 Score=29.85 Aligned_cols=13 Identities=54% Similarity=1.789 Sum_probs=6.6
Q ss_pred CCcceeeecCCCc
Q 021064 303 GPKQVCCCCCPGC 315 (318)
Q Consensus 303 ~~~~~~~~~~~~~ 315 (318)
.|..-|||||--|
T Consensus 22 apggcccccc~cc 34 (56)
T TIGR03602 22 APGGCCCCCCCCC 34 (56)
T ss_pred cCCCeEEEeccEE
Confidence 3444555555444
No 22
>KOG4101 consensus Cysteine-rich hydrophobic proteins [General function prediction only]
Probab=57.79 E-value=3.1 Score=36.16 Aligned_cols=13 Identities=54% Similarity=1.789 Sum_probs=10.6
Q ss_pred ceeeecCCCcccC
Q 021064 306 QVCCCCCPGCWRW 318 (318)
Q Consensus 306 ~~~~~~~~~~~~~ 318 (318)
-+||||--||--|
T Consensus 100 c~cCCCtlGCSmW 112 (175)
T KOG4101|consen 100 CLCCCCTLGCSMW 112 (175)
T ss_pred HHHHhhccCcccc
Confidence 3688888999887
No 23
>PF08800 VirE_N: VirE N-terminal domain; InterPro: IPR014907 This domain is associated with the N terminus of Virulence E proteins. The function of the domain is unknown.
Probab=55.42 E-value=19 Score=30.61 Aligned_cols=33 Identities=21% Similarity=0.396 Sum_probs=29.1
Q ss_pred HHHHhccCeEEEEEeCCCCcHHHHHHHHHccCC
Q 021064 19 CQLLEEYTQILVAAADNVGSNQLQNIRRGLRGD 51 (318)
Q Consensus 19 ~e~l~~y~~v~iv~~~~v~s~qlq~IR~~Lr~~ 51 (318)
.+.+..|+.++++|+++++..++.++|+.++..
T Consensus 24 ~~~l~~~sglv~lDiD~l~~ee~~~~r~~l~~~ 56 (136)
T PF08800_consen 24 ADNLKAYSGLVVLDIDHLDPEEAEELRQLLFED 56 (136)
T ss_pred hhhhhhCCCcEEEEeCCCCHHHHHHHHHHHhcC
Confidence 355778999999999999999999999999864
No 24
>COG1480 Predicted membrane-associated HD superfamily hydrolase [General function prediction only]
Probab=54.67 E-value=10 Score=40.65 Aligned_cols=50 Identities=26% Similarity=0.510 Sum_probs=35.8
Q ss_pred CCCCCchhhhh-----hcCcceEEecceEEEecCeEEeecCcccChhHHHHHHHhCCCccccc
Q 021064 132 GLDPSQTSFFQ-----VLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYG 189 (318)
Q Consensus 132 ~~~P~~~s~fq-----kLgIptki~kG~I~I~~d~~v~k~Ge~v~~~qA~LL~~L~I~p~~~~ 189 (318)
-++++++...+ +.. |++|.+|+| ++++|+.|+.++..+|++||+.--+..
T Consensus 219 ~~D~e~T~~~~~ea~~~v~-~V~I~~gqi-------Iv~~ge~It~~~~~~L~~lgl~~~s~~ 273 (700)
T COG1480 219 VYDEEQTENLRQEALSKVE-PVKISKGQI-------IVKEGEIITDEDYVILDLLGLLSLSVN 273 (700)
T ss_pred ccCHHHHHHHHHHHHhccC-ceEEecCce-------EeecCceecHHHHHHHHHhhHHhcccc
Confidence 36666654432 222 666666665 999999999999999999988765443
No 25
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=50.36 E-value=32 Score=29.59 Aligned_cols=77 Identities=14% Similarity=0.162 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHhccCeEEEEEeCCCCcHHHHHHHHHccCCcEEEEEehHHHHHHHhhchhhcCCcccccccccccCceEE
Q 021064 12 IAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGL 91 (318)
Q Consensus 12 ~~~v~el~e~l~~y~~v~iv~~~~v~s~qlq~IR~~Lr~~a~~~vgKNtL~r~AL~~~~~~~~~~~l~~L~~~L~G~~gL 91 (318)
.++.+++.+.++++-.+|++|.+.+ ..+.+.=..--..+.+++-.|+=|+.-++.. .|+-+
T Consensus 42 D~~L~~i~~~vsnfa~IylvdideV--~~~~~~~~l~~p~tvmfFfn~kHmkiD~gtg-----------------dn~Ki 102 (142)
T KOG3414|consen 42 DELLSSIAEDVSNFAVIYLVDIDEV--PDFVKMYELYDPPTVMFFFNNKHMKIDLGTG-----------------DNNKI 102 (142)
T ss_pred HHHHHHHHHHHhhceEEEEEecchh--hhhhhhhcccCCceEEEEEcCceEEEeeCCC-----------------CCceE
Confidence 4678899999999999999999954 3333333222234789999998888776642 33456
Q ss_pred EEecCChHHHHHHHHh
Q 021064 92 IFTKGDLKEVKEEVAK 107 (318)
Q Consensus 92 iFTn~dp~ev~k~l~~ 107 (318)
.|.-+|..+..++++.
T Consensus 103 n~~~~~kq~~Idiie~ 118 (142)
T KOG3414|consen 103 NFAFEDKQEFIDIIET 118 (142)
T ss_pred EEEeccHHHHHHHHHH
Confidence 6667788888888864
No 26
>PF07945 Toxin_16: Janus-atracotoxin; InterPro: IPR012499 This family includes three peptides secreted by the spider Hadronyche versuta (Blue mountains funnel-web spider) (P82226 from SWISSPROT, P82227 from SWISSPROT, P82228 from SWISSPROT). These are insect-selective, excitatory neurotoxins that may function by antagonising muscle acetylcholine receptors, or acetylcholine receptor subtypes present in other invertebrate neurons []. Janus atracotoxin-Hv1c (J-ACTX-Hv1c, P82228 from SWISSPROT) is organised into a disulphide-rich globular core (residues 3-19) and a beta-hairpin (residues 20-34). There are 4 disulphide bridges, one of which is a vicinal disulphide bridge; this is known to be unimportant in the maintenance of structure but critical for insecticidal activity []. ; GO: 0009405 pathogenesis, 0005576 extracellular region; PDB: 1DL0_A.
Probab=50.06 E-value=5.5 Score=25.84 Aligned_cols=11 Identities=64% Similarity=1.869 Sum_probs=3.6
Q ss_pred CcceeeecCCC
Q 021064 304 PKQVCCCCCPG 314 (318)
Q Consensus 304 ~~~~~~~~~~~ 314 (318)
|-..||-||||
T Consensus 9 pcaaccpccpg 19 (36)
T PF07945_consen 9 PCAACCPCCPG 19 (36)
T ss_dssp B--SS----TT
T ss_pred CcccccCCCCC
Confidence 45568888887
No 27
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=46.86 E-value=5.2 Score=38.26 Aligned_cols=11 Identities=55% Similarity=1.736 Sum_probs=7.4
Q ss_pred eeecCC-CcccC
Q 021064 308 CCCCCP-GCWRW 318 (318)
Q Consensus 308 ~~~~~~-~~~~~ 318 (318)
|||||+ +||.|
T Consensus 147 ~~~~~~~~c~~~ 158 (279)
T KOG0716|consen 147 CCCCCNRFCCGK 158 (279)
T ss_pred hhhcchHHHhhc
Confidence 345667 88876
No 28
>PF03716 WCCH: WCCH motif ; InterPro: IPR005159 The WCCH motif is found in a retrotransposons and Gemini viruses. A specific function has not been associated to this motif [].
Probab=43.86 E-value=10 Score=23.26 Aligned_cols=8 Identities=75% Similarity=2.157 Sum_probs=6.5
Q ss_pred ecCCCccc
Q 021064 310 CCCPGCWR 317 (318)
Q Consensus 310 ~~~~~~~~ 317 (318)
||||.|-|
T Consensus 6 C~cphCpr 13 (25)
T PF03716_consen 6 CCCPHCPR 13 (25)
T ss_pred cCCCCCcc
Confidence 78899866
No 29
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=40.54 E-value=10 Score=41.38 Aligned_cols=9 Identities=67% Similarity=2.508 Sum_probs=5.6
Q ss_pred eeee-cCCCc
Q 021064 307 VCCC-CCPGC 315 (318)
Q Consensus 307 ~~~~-~~~~~ 315 (318)
.||| ||.+|
T Consensus 114 fCcCRCc~~C 123 (806)
T PF05478_consen 114 FCCCRCCGNC 123 (806)
T ss_pred HhccccCCCc
Confidence 4666 66666
No 30
>PF15482 CCER1: Coiled-coil domain-containing glutamate-rich protein family 1
Probab=39.99 E-value=12 Score=33.70 Aligned_cols=14 Identities=50% Similarity=1.780 Sum_probs=7.1
Q ss_pred CCcceeeecCCCccc
Q 021064 303 GPKQVCCCCCPGCWR 317 (318)
Q Consensus 303 ~~~~~~~~~~~~~~~ 317 (318)
|-...|-||| .||.
T Consensus 108 gl~plc~ccc-scw~ 121 (214)
T PF15482_consen 108 GLHPLCLCCC-SCWC 121 (214)
T ss_pred ccCchhheec-cccC
Confidence 3334555555 4664
No 31
>PF08496 Peptidase_S49_N: Peptidase family S49 N-terminal; InterPro: IPR013703 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found to the N terminus of bacterial signal peptidases that belong to the MEROPS peptidase family S49 (protease IV family, clan SK) (see also IPR002142 from INTERPRO) [, ]. ; GO: 0004252 serine-type endopeptidase activity, 0005886 plasma membrane
Probab=38.55 E-value=28 Score=30.55 Aligned_cols=26 Identities=8% Similarity=0.310 Sum_probs=23.9
Q ss_pred ccCeEEEEEeCC-CCcHHHHHHHHHcc
Q 021064 24 EYTQILVAAADN-VGSNQLQNIRRGLR 49 (318)
Q Consensus 24 ~y~~v~iv~~~~-v~s~qlq~IR~~Lr 49 (318)
.-+.+|++||+| +++++...||.+..
T Consensus 96 ~~~r~~VldF~Gdi~A~~v~~LReeis 122 (155)
T PF08496_consen 96 PKPRLFVLDFKGDIKASEVESLREEIS 122 (155)
T ss_pred CCCeEEEEecCCCccHHHHHHHHHHHH
Confidence 479999999997 99999999999985
No 32
>smart00226 LMWPc Low molecular weight phosphatase family.
Probab=37.13 E-value=37 Score=28.21 Aligned_cols=57 Identities=19% Similarity=0.200 Sum_probs=39.3
Q ss_pred EECCCCCCCCCCchhhhhhcCcceEEecceEEEecCeEEeecCcccChhHHHHHHHhCCCccc
Q 021064 125 VVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFS 187 (318)
Q Consensus 125 vIp~G~t~~~P~~~s~fqkLgIptki~kG~I~I~~d~~v~k~Ge~v~~~qA~LL~~L~I~p~~ 187 (318)
+|-.|++.-+|--..+|+++. ++.+++.+==+....|+++++.-+.+|+..||.+..
T Consensus 3 FVC~~N~cRSpmAEa~~~~~~------~~~~~v~SAG~~~~~g~~~~~~a~~~l~~~Gid~~~ 59 (140)
T smart00226 3 FVCTGNICRSPMAEALFKAIV------GDRVKIDSAGTGAWVGGGADPRAVEVLKEHGIALSH 59 (140)
T ss_pred EEeCChhhhHHHHHHHHHHhc------CCCEEEEcCcccCCCCCCCCHHHHHHHHHcCcCccc
Confidence 455666665555567777765 335666554444457889999999999999998753
No 33
>cd03523 NTR_like NTR_like domain; a beta barrel with an oligosaccharide/oligonucleotide-binding fold found in netrins, complement proteins, tissue inhibitors of metalloproteases (TIMP), and procollagen C-proteinase enhancers (PCOLCE), amongst others. In netrins, the domain plays a role in controlling axon branching in neural development, while the common function of these modules in TIMPs appears to be binding to metzincins. A subset of this family is also known as the C345C domain because it occurs as a C-terminal domain in complement C3, C4 and C5. In C5, the domain interacts with various partners during the formation of the membrane attack complex.
Probab=37.10 E-value=13 Score=29.60 Aligned_cols=9 Identities=44% Similarity=1.224 Sum_probs=6.2
Q ss_pred ceeeecCCC
Q 021064 306 QVCCCCCPG 314 (318)
Q Consensus 306 ~~~~~~~~~ 314 (318)
..||||||.
T Consensus 53 ~~~~~c~~~ 61 (105)
T cd03523 53 PACCPCHPI 61 (105)
T ss_pred CcccccCcc
Confidence 348888873
No 34
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=36.05 E-value=1.8e+02 Score=30.26 Aligned_cols=127 Identities=16% Similarity=0.187 Sum_probs=90.2
Q ss_pred hhhhhcCcceEEe--cceEEEecCeEEeecCcccChhHHHHHHHhCCCccccccceeeeecc----C-------------
Q 021064 139 SFFQVLNIPTKIN--KGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYEN----G------------- 199 (318)
Q Consensus 139 s~fqkLgIptki~--kG~I~I~~d~~v~k~Ge~v~~~qA~LL~~L~I~p~~~~l~l~~~~~~----g------------- 199 (318)
.-|...|+|+=+- ||-+ ..++++|+. ++....-++.+|+..++|.--....||= |
T Consensus 41 E~fS~~GVPVflaDvKGDL-----sGla~~G~~-~~ki~~R~~~~gl~~~~~~~~Pv~fwdl~g~~G~PvRaTvsemGPl 114 (502)
T PF05872_consen 41 EQFSDAGVPVFLADVKGDL-----SGLAAPGEP-NEKIEERAEKLGLQDFEPRAFPVEFWDLFGEKGHPVRATVSEMGPL 114 (502)
T ss_pred HHhhhcCCcEEEeecccch-----hcccCCCCC-CHHHHHHHHHcCCCCCCCCCCCEEEEecCCCCCceEEeeHHhhchH
Confidence 6688999999884 6666 689999988 7888888999999888777777777762 2
Q ss_pred -----------------ccc----CCCcccCChHHHHHHHHHHHHHHHHHhhhcCCCCccchhhHHHHHHHHHHhhhhhc
Q 021064 200 -----------------SVY----SPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALAT 258 (318)
Q Consensus 200 -----------------~~~----~~~~L~i~~e~~~~~~~~a~~~a~~ls~~~~ypt~~s~p~~i~~a~~~a~ala~~~ 258 (318)
.+| +...+-+|-.+++.++.-.-.++..++.+.|-++++|+-.+ +++.-..-.-+.+.
T Consensus 115 LLsrlL~LNdtQ~gvL~i~F~~ADd~gLlLlDLkDLra~l~~v~e~~~e~~~~yG~is~aS~gaI-~R~ll~LE~qG~d~ 193 (502)
T PF05872_consen 115 LLSRLLELNDTQEGVLNIVFRIADDEGLLLLDLKDLRAMLQYVSENAKELSAEYGNISSASIGAI-QRALLVLEQQGGDQ 193 (502)
T ss_pred HHHHHhccchHHHHHHHHHHHHhccCCCccccHHHHHHHHHHHHhhHHHHHHHcCCccHHHHHHH-HHHHHHHHHcchHh
Confidence 011 24556788899999999999999999999999999998766 33333333333333
Q ss_pred CccCCChHhHHHHhh
Q 021064 259 EYSFPQADKVKEYLA 273 (318)
Q Consensus 259 ~~~~~~~~~~~~~l~ 273 (318)
-|-.|.- .+.|++.
T Consensus 194 FFGEPal-di~Dl~r 207 (502)
T PF05872_consen 194 FFGEPAL-DIEDLMR 207 (502)
T ss_pred hCCCccC-CHHHHhc
Confidence 3444432 3455554
No 35
>TIGR00762 DegV EDD domain protein, DegV family. This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each than to most homologs from other species. This suggests both recent paralogy and diversity of function. DegV itself is encoded immediately downstream of DegU, a transcriptional regulator of degradation, but is itself uncharacterized. Crystallography suggested a lipid-binding site, while comparison of the crystal structure to dihydroxyacetone kinase and to a mannose transporter EIIA domain suggests a conserved domain, EDD, with phosphotransferase activity.
Probab=34.32 E-value=2.9e+02 Score=25.84 Aligned_cols=120 Identities=17% Similarity=0.171 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHhccCeEEEEEeCCCCcHHHHHHHHHccC--CcEEEEEehHHHHHHHhhchhhcCCcccccccccccCce
Q 021064 12 IAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRG--DSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNV 89 (318)
Q Consensus 12 ~~~v~el~e~l~~y~~v~iv~~~~v~s~qlq~IR~~Lr~--~a~~~vgKNtL~r~AL~~~~~~~~~~~l~~L~~~L~G~~ 89 (318)
.++.+.+.++.++|..|+.+.+..--|...+..+..-.. +-.+.|.-......+.+-.... ..++.+ .
T Consensus 65 ~~~~~~~~~l~~~~~~vi~i~iSs~lSgty~~a~~aa~~~~~~~i~ViDS~~~s~~~g~~v~~-----a~~~~~--~--- 134 (275)
T TIGR00762 65 GEFLELYEKLLEEGDEVLSIHLSSGLSGTYQSARQAAEMVDEAKVTVIDSKSASMGLGLLVLE-----AAKLAE--E--- 134 (275)
T ss_pred HHHHHHHHHHHhCCCeEEEEEcCCchhHHHHHHHHHHhhCCCCCEEEECChHHHHHHHHHHHH-----HHHHHH--c---
Confidence 355666777888999999999987666666666555432 2368888777777776654311 112222 1
Q ss_pred EEEEecCChHHHHHHHHhhccCccccCCCCCCceEEECCCCCCCCCCchhhhhhcCcceEEecceEEEecCeEEeecCcc
Q 021064 90 GLIFTKGDLKEVKEEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDK 169 (318)
Q Consensus 90 gLiFTn~dp~ev~k~l~~~k~~~~Ak~G~iA~~dVvIp~G~t~~~P~~~s~fqkLgIptki~kG~I~I~~d~~v~k~Ge~ 169 (318)
+.++.++.+.+++++... ..++++ .|..-+.+|-.
T Consensus 135 -----G~s~~eI~~~l~~~~~~~---------~~~f~v-------------------------------~~L~~L~~gGR 169 (275)
T TIGR00762 135 -----GKSLEEILAKLEELRERT---------KLYFVV-------------------------------DTLEYLVKGGR 169 (275)
T ss_pred -----CCCHHHHHHHHHHHHhhc---------EEEEEE-------------------------------CcHHHHHhcCC
Confidence 346888888888766532 112211 12222335556
Q ss_pred cChhHHHHHHHhCCCcc
Q 021064 170 VGSSEAALLAKLGIRPF 186 (318)
Q Consensus 170 v~~~qA~LL~~L~I~p~ 186 (318)
|+.-++.+-++|+|+|.
T Consensus 170 is~~~~~~g~lL~ikPI 186 (275)
T TIGR00762 170 ISKAAALIGSLLNIKPI 186 (275)
T ss_pred ccHHHHHHHHhhcceeE
Confidence 88888999999999986
No 36
>PLN00208 translation initiation factor (eIF); Provisional
Probab=34.22 E-value=58 Score=28.41 Aligned_cols=47 Identities=32% Similarity=0.275 Sum_probs=31.9
Q ss_pred cceEEecceEEEec-CeEEe-------ecCcc---cChhHHHHHHHhCCCcccccccee
Q 021064 146 IPTKINKGTVEIIT-PVELI-------RKGDK---VGSSEAALLAKLGIRPFSYGLVVQ 193 (318)
Q Consensus 146 Iptki~kG~I~I~~-d~~v~-------k~Ge~---v~~~qA~LL~~L~I~p~~~~l~l~ 193 (318)
||.|+.+ +|||.. |++++ .+|+. .+++|++-|+..|.=|..|.+.=.
T Consensus 61 IpGKmRK-rIWI~~GD~VlVel~~~d~~KgdIv~ry~~dqvr~Lkk~G~~P~~f~~~~~ 118 (145)
T PLN00208 61 IRGKMRK-KVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEG 118 (145)
T ss_pred Eecccee-eEEecCCCEEEEEccCCCCCEEEEEEEcCHHHHHHHHHcCCCCcceeeccc
Confidence 5555555 455543 44444 34443 689999999999999988876433
No 37
>PF15260 FAM219A: Protein family FAM219A
Probab=31.94 E-value=19 Score=30.54 Aligned_cols=9 Identities=56% Similarity=1.877 Sum_probs=5.0
Q ss_pred ceeeecCCC
Q 021064 306 QVCCCCCPG 314 (318)
Q Consensus 306 ~~~~~~~~~ 314 (318)
+-|||||+.
T Consensus 111 ~~~~~C~~~ 119 (125)
T PF15260_consen 111 SSCCCCQPS 119 (125)
T ss_pred ccccccCCC
Confidence 346666553
No 38
>PTZ00329 eukaryotic translation initiation factor 1A; Provisional
Probab=31.90 E-value=56 Score=28.79 Aligned_cols=28 Identities=18% Similarity=0.237 Sum_probs=24.3
Q ss_pred cChhHHHHHHHhCCCccccccceeeeec
Q 021064 170 VGSSEAALLAKLGIRPFSYGLVVQSVYE 197 (318)
Q Consensus 170 v~~~qA~LL~~L~I~p~~~~l~l~~~~~ 197 (318)
.+++|++-|+..|.=|..|++.=...+.
T Consensus 95 y~~devr~Lk~~g~~P~~~~~~~~~~~~ 122 (155)
T PTZ00329 95 YTPDEARALKQHGELPETAKINETDIFD 122 (155)
T ss_pred cCHHHHHHHHHcCCCCcceeeccccccC
Confidence 7899999999999999999887766653
No 39
>PRK04531 acetylglutamate kinase; Provisional
Probab=30.19 E-value=1.6e+02 Score=29.74 Aligned_cols=106 Identities=21% Similarity=0.238 Sum_probs=62.5
Q ss_pred CChHHHHHHHHhhccCccccCCCCCCceEEECCCCCCCCCCc------hhhhhhcCcceEEecceEEEecCeEEeecCcc
Q 021064 96 GDLKEVKEEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDPSQ------TSFFQVLNIPTKINKGTVEIITPVELIRKGDK 169 (318)
Q Consensus 96 ~dp~ev~k~l~~~k~~~~Ak~G~iA~~dVvIp~G~t~~~P~~------~s~fqkLgIptki~kG~I~I~~d~~v~k~Ge~ 169 (318)
.++.++..++..|+..+|- +.+||+=|-.-+.... ..+|+++|+.+-+.-|-
T Consensus 18 ~~~~e~~~~l~~F~~~~~~-------~~~VIKiGG~~l~~~~~~l~~dla~L~~~G~~~VlVHGg--------------- 75 (398)
T PRK04531 18 ASAKEISQYLKRFSQLDAE-------RFAVIKVGGAVLRDDLEALASSLSFLQEVGLTPIVVHGA--------------- 75 (398)
T ss_pred CChhhhHHHHHHHhCcCCC-------cEEEEEEChHHhhcCHHHHHHHHHHHHHCCCcEEEEECC---------------
Confidence 4788888888888776433 6677777654343322 26678888866555332
Q ss_pred cChhHHHHHHHhCCCccccccceeeeeccCc-ccCCCcccCChHHHHHHHHHHHHHHHHHhhhcCC
Q 021064 170 VGSSEAALLAKLGIRPFSYGLVVQSVYENGS-VYSPEVLDLSEDDLVEKFASSVSMVTALALAISY 234 (318)
Q Consensus 170 v~~~qA~LL~~L~I~p~~~~l~l~~~~~~g~-~~~~~~L~i~~e~~~~~~~~a~~~a~~ls~~~~y 234 (318)
++.--.+|+.+||++... +|. +.+++.|++-.+.+. .+...+..+..-+++.|+
T Consensus 76 -gpqI~~~l~~~gie~~~v---------~G~RVTd~~tl~vv~~~l~-~vn~~lv~~I~~~L~~g~ 130 (398)
T PRK04531 76 -GPQLDAELDAAGIEKETV---------NGLRVTSPEALAIVRKVFQ-RSNLDLVEAVESSLRAGS 130 (398)
T ss_pred -CHHHHHHHHHcCCCcEEE---------CCEecCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCC
Confidence 234447888899887543 553 335566555555543 333333333444556666
No 40
>COG0303 MoeA Molybdopterin biosynthesis enzyme [Coenzyme metabolism]
Probab=28.43 E-value=61 Score=32.74 Aligned_cols=29 Identities=34% Similarity=0.547 Sum_probs=23.3
Q ss_pred CCCceEEECCCCCCCCCCchhhhhhcCcce
Q 021064 119 VAPIDVVVPPGNTGLDPSQTSFFQVLNIPT 148 (318)
Q Consensus 119 iA~~dVvIp~G~t~~~P~~~s~fqkLgIpt 148 (318)
+++-++++++| |-+.|...+.|-++||..
T Consensus 142 i~~G~vil~~G-~~L~p~~i~llas~Gi~~ 170 (404)
T COG0303 142 VAKGDVILRAG-TRLTPAEIALLASLGIAE 170 (404)
T ss_pred ccCCCEeecCC-CCcCHHHHHHHHhCCCce
Confidence 78888888888 558888888888888764
No 41
>PF09778 Guanylate_cyc_2: Guanylylate cyclase; InterPro: IPR018616 Members of this family of proteins catalyse the conversion of guanosine triphosphate (GTP) to 3',5'-cyclic guanosine monophosphate (cGMP) and pyrophosphate.
Probab=28.08 E-value=51 Score=30.48 Aligned_cols=56 Identities=23% Similarity=0.277 Sum_probs=42.2
Q ss_pred ccChhHHHHHHHhCCCccccccc--eeeeeccCcccCCCcccCChHHHHHHHHHHHHHH
Q 021064 169 KVGSSEAALLAKLGIRPFSYGLV--VQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMV 225 (318)
Q Consensus 169 ~v~~~qA~LL~~L~I~p~~~~l~--l~~~~~~g~~~~~~~L~i~~e~~~~~~~~a~~~a 225 (318)
.=|-+.|-||++||++...|... +.-.|....-|. +.++-|++.+...|++|..+-
T Consensus 46 iWTIDLayLL~~f~v~~~f~T~TlGvnp~y~~~~FY~-~~~~~D~~RV~~lF~~A~~~g 103 (212)
T PF09778_consen 46 IWTIDLAYLLRRFGVRHSFYTVTLGVNPNYSVESFYK-KNFDEDENRVNRLFQKAKAAG 103 (212)
T ss_pred eehhHHHHHHHHcCCCeeEecCccccCcCccccchHH-HhhhhHHHHHHHHHHHHHHcC
Confidence 46789999999999998666655 566676666664 677777888888888876643
No 42
>COG5133 Uncharacterized conserved protein [Function unknown]
Probab=27.00 E-value=1.1e+02 Score=26.81 Aligned_cols=78 Identities=18% Similarity=0.301 Sum_probs=53.4
Q ss_pred CChHHHHHHHHhhccCc----cccCCCCCCceEEECCCCCC---------CCCC----chhhhhhcCcceEEecce---E
Q 021064 96 GDLKEVKEEVAKYKVGA----PARVGLVAPIDVVVPPGNTG---------LDPS----QTSFFQVLNIPTKINKGT---V 155 (318)
Q Consensus 96 ~dp~ev~k~l~~~k~~~----~Ak~G~iA~~dVvIp~G~t~---------~~P~----~~s~fqkLgIptki~kG~---I 155 (318)
-|+.++++.+.+.+-|. -++-|.+.-+||.||.|-.+ +.|. .+.-+=-|+|.+++++-- .
T Consensus 54 id~qeiydLia~I~DPEHPltL~QLsVV~lEdi~v~D~~~~n~i~~v~v~itPTIpHCSmatlIGLcIrvrleR~lpprF 133 (181)
T COG5133 54 IDQQEIYDLIADIRDPEHPLTLEQLSVVSLEDISVPDGIAPNVIRCVKVVITPTIPHCSMATLIGLCIRVRLERHLPPRF 133 (181)
T ss_pred cCHHHHHHHHHhcCCCCCCccHhhcceeeeccccccCCCCCCeeEEEEEEeccCCCchhHHHHhhhheeeeehhcCCCce
Confidence 37888888888776654 34556688888888887432 3333 345566789999887642 1
Q ss_pred EEecCeEEeecCcccChhHHH
Q 021064 156 EIITPVELIRKGDKVGSSEAA 176 (318)
Q Consensus 156 ~I~~d~~v~k~Ge~v~~~qA~ 176 (318)
.+ .+.+++|-.++..|..
T Consensus 134 ~v---~v~ikkGtH~se~qvN 151 (181)
T COG5133 134 HV---QVHIKKGTHISERQVN 151 (181)
T ss_pred eE---EEEEecCCcccHHHHh
Confidence 22 3678899999888765
No 43
>PF14226 DIOX_N: non-haem dioxygenase in morphine synthesis N-terminal; PDB: 3OOX_A 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A ....
Probab=26.53 E-value=1.4e+02 Score=23.55 Aligned_cols=42 Identities=10% Similarity=0.157 Sum_probs=34.2
Q ss_pred cHHHHHHHHHHHHHHHhccCeEEEEEeCCCCcHHHHHHHHHcc
Q 021064 7 KAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLR 49 (318)
Q Consensus 7 ~~e~K~~~v~el~e~l~~y~~v~iv~~~~v~s~qlq~IR~~Lr 49 (318)
..+.+.+++++|.+.++++-.++|++. |++...++++.+..+
T Consensus 9 ~~~~~~~~~~~l~~A~~~~GFf~l~nh-Gi~~~l~~~~~~~~~ 50 (116)
T PF14226_consen 9 DPADREEVAEQLRDACEEWGFFYLVNH-GIPQELIDRVFAAAR 50 (116)
T ss_dssp CHHHHHHHHHHHHHHHHHTSEEEEESS-SSSHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHhCCEEEEecc-cccchhhHHHHHHHH
Confidence 457788999999999999888777665 898877777777665
No 44
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=26.44 E-value=2.2e+02 Score=26.51 Aligned_cols=122 Identities=17% Similarity=0.119 Sum_probs=60.9
Q ss_pred HHHHHHHHhccC-eEEEEEeCC--CCcHHHHHHHHHcc--CCcEEEEEehHHHHHHHhhchhhc--CCcccccccccc--
Q 021064 15 DAKLCQLLEEYT-QILVAAADN--VGSNQLQNIRRGLR--GDSVVLMGKNTMMKRTIRMHAEKT--GNTAFLNLIPLL-- 85 (318)
Q Consensus 15 v~el~e~l~~y~-~v~iv~~~~--v~s~qlq~IR~~Lr--~~a~~~vgKNtL~r~AL~~~~~~~--~~~~l~~L~~~L-- 85 (318)
|++|++-|+.-+ ..++||+|+ +.+.... +.-+. ....+..-+|.-+.....+....+ +.++..++.+++
T Consensus 51 ~~~~~~~~~~~~p~aViFDlDgTLlDSs~~~--~~G~~~~s~~~~~~l~g~~~w~~~~~~~~~~s~p~~~a~elL~~l~~ 128 (237)
T TIGR01672 51 VAQIENSLEGRPPIAVSFDIDDTVLFSSPGF--WRGKKTFSPGSEDYLKNQVFWEKVNNGWDEFSIPKEVARQLIDMHQR 128 (237)
T ss_pred HHHHHHhcCCCCCeEEEEeCCCccccCcHHH--hCCcccCCHHHhhhhcChHHHHHHHHhcccCCcchhHHHHHHHHHHH
Confidence 678888888664 599999999 4444433 11111 112234434444444443332222 222244444444
Q ss_pred cCceEEEEecCC---hH-HHHHHHHhhccCccccCCCCCCceEEECCCCCC-CCCCchhhhhhcCc
Q 021064 86 QGNVGLIFTKGD---LK-EVKEEVAKYKVGAPARVGLVAPIDVVVPPGNTG-LDPSQTSFFQVLNI 146 (318)
Q Consensus 86 ~G~~gLiFTn~d---p~-ev~k~l~~~k~~~~Ak~G~iA~~dVvIp~G~t~-~~P~~~s~fqkLgI 146 (318)
.|-.-.+.||.+ +. -+..+++.+..+. ..++++....++ -.|++...++++|+
T Consensus 129 ~G~~i~iVTnr~~~k~~~~a~~ll~~lGi~~--------~f~~i~~~d~~~~~Kp~~~~~l~~~~i 186 (237)
T TIGR01672 129 RGDAIFFVTGRTPGKTDTVSKTLAKNFHIPA--------MNPVIFAGDKPGQYQYTKTQWIQDKNI 186 (237)
T ss_pred CCCEEEEEeCCCCCcCHHHHHHHHHHhCCch--------heeEEECCCCCCCCCCCHHHHHHhCCC
Confidence 355667778862 33 3444444566543 124555544432 23455555566665
No 45
>PF12953 DUF3842: Domain of unknown function (DUF3842); InterPro: IPR024208 This family of proteins has no known function.
Probab=26.08 E-value=98 Score=26.57 Aligned_cols=73 Identities=18% Similarity=0.387 Sum_probs=49.1
Q ss_pred EEEEEeCC--CCcHHHHHHHHHccCCc-EEEEEehHHHHHHHhhchhhcCCcccc------cccccccCceEEEEecCCh
Q 021064 28 ILVAAADN--VGSNQLQNIRRGLRGDS-VVLMGKNTMMKRTIRMHAEKTGNTAFL------NLIPLLQGNVGLIFTKGDL 98 (318)
Q Consensus 28 v~iv~~~~--v~s~qlq~IR~~Lr~~a-~~~vgKNtL~r~AL~~~~~~~~~~~l~------~L~~~L~G~~gLiFTn~dp 98 (318)
+.++|=+| +...-.++||+++.++. .+-+|=|.+..-++-+...++..+|-. .=.+.+-|+.|+++.|.=.
T Consensus 2 I~VIDGQGGGiG~~iv~~lr~~~~~~~eI~AlGTNa~AT~~MlKaGA~~gATGENaIv~n~~~aDiIvGpigIv~a~sml 81 (131)
T PF12953_consen 2 IAVIDGQGGGIGKQIVEKLRKELPEEVEIIALGTNAIATSAMLKAGANEGATGENAIVVNARKADIIVGPIGIVIANSML 81 (131)
T ss_pred EEEEeCCCChhHHHHHHHHHHhCCCCcEEEEEehhHHHHHHHHHcCCCCcccccchheeccCCCCEEECcHHHhccCccc
Confidence 55666664 77788899999999754 557899999999998887665553311 1134556666666655433
Q ss_pred HH
Q 021064 99 KE 100 (318)
Q Consensus 99 ~e 100 (318)
.|
T Consensus 82 GE 83 (131)
T PF12953_consen 82 GE 83 (131)
T ss_pred cc
Confidence 33
No 46
>PRK10126 tyrosine phosphatase; Provisional
Probab=26.07 E-value=60 Score=27.57 Aligned_cols=59 Identities=14% Similarity=0.081 Sum_probs=36.6
Q ss_pred EEECCCCCCCCCCchhhhhhcCcceEEecceEEEecCeEEeecCcccChhHHHHHHHhCCCccccc
Q 021064 124 VVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYG 189 (318)
Q Consensus 124 VvIp~G~t~~~P~~~s~fqkLgIptki~kG~I~I~~d~~v~k~Ge~v~~~qA~LL~~L~I~p~~~~ 189 (318)
++|--|++.-+|--...|+.++- .+++.+==+....|+++++.-+.+|+..||++..+.
T Consensus 6 LFVC~gN~cRSpmAEa~~~~~~~-------~~~v~SAG~~~~~g~~~~~~a~~~l~~~Gid~~~h~ 64 (147)
T PRK10126 6 LVVCVGNICRSPTAERLLQRYHP-------ELKVESAGLGALVGKGADPTAISVAAEHQLSLEGHC 64 (147)
T ss_pred EEEcCCcHhHHHHHHHHHHHhcC-------CeEEEeeeccCCCCCCCCHHHHHHHHHcCCCcCCCc
Confidence 35566666555544566776651 154444333334788888888888888888776543
No 47
>TIGR00253 RNA_bind_YhbY putative RNA-binding protein, YhbY family. A combination of crystal structure, molecular modeling, and bioinformatic data together suggest that members of this family, including YhbY of E. coli, are RNA binding proteins.
Probab=25.66 E-value=3.5e+02 Score=21.70 Aligned_cols=76 Identities=9% Similarity=0.141 Sum_probs=52.2
Q ss_pred HHHHHHHHhccCeEEEEEeCCCCcHHHHHHHHHccCC--cEEEEEehHHHHH-HH-hhchhhcCCcccccccccccCceE
Q 021064 15 DAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGD--SVVLMGKNTMMKR-TI-RMHAEKTGNTAFLNLIPLLQGNVG 90 (318)
Q Consensus 15 v~el~e~l~~y~~v~iv~~~~v~s~qlq~IR~~Lr~~--a~~~vgKNtL~r~-AL-~~~~~~~~~~~l~~L~~~L~G~~g 90 (318)
-..|+..-..-+-++.+.=+|++-+-+.+++..|... .++++.+|.--.+ .+ ....+.. -..+... -|.++
T Consensus 6 r~~Lr~~ah~l~p~v~IGK~Glt~~vi~ei~~aL~~hELIKVkvl~~~~~~~~e~a~~i~~~~----~a~~Vq~-iG~~~ 80 (95)
T TIGR00253 6 KRHLRGKAHHLKPVVLVGKNGLTEGVIKEIEQALEHRELIKVKVATEDREDKTLIAEALVKET----GACNVQV-IGKTI 80 (95)
T ss_pred HHHHHHHhCCCCCeEEECCCCCCHHHHHHHHHHHHhCCcEEEEecCCChhHHHHHHHHHHHHH----CCEEEEE-EccEE
Confidence 3568888888999999999999999999999999854 6778888854322 11 1111110 1123333 49999
Q ss_pred EEEec
Q 021064 91 LIFTK 95 (318)
Q Consensus 91 LiFTn 95 (318)
++|-.
T Consensus 81 vlYR~ 85 (95)
T TIGR00253 81 VLYRP 85 (95)
T ss_pred EEEec
Confidence 99853
No 48
>PF08098 ATX_III: Anemonia sulcata toxin III family; InterPro: IPR012509 This entry occurs within the Anemonia sulcata toxin III (ATX III) neurotoxin family. ATX III is a neurotoxin that is produced by sea anemone; it adopts a compact structure containing four reverse turns and two other chain reversals, but no regular alpha-helix or beta-sheet. A hydrophobic patch found on the surface of the peptide may constitute part of the sodium channel binding surface [].; GO: 0019871 sodium channel inhibitor activity, 0009405 pathogenesis, 0042151 nematocyst; PDB: 1ANS_A.
Probab=24.77 E-value=29 Score=21.41 Aligned_cols=10 Identities=40% Similarity=1.029 Sum_probs=2.5
Q ss_pred eecCCCcccC
Q 021064 309 CCCCPGCWRW 318 (318)
Q Consensus 309 ~~~~~~~~~~ 318 (318)
||-|..||-|
T Consensus 3 CCPCamc~~~ 12 (27)
T PF08098_consen 3 CCPCAMCKYT 12 (27)
T ss_dssp S--S----TT
T ss_pred ccccccceee
Confidence 6677778865
No 49
>PF04472 DUF552: Protein of unknown function (DUF552); InterPro: IPR007561 This entry represents a cell division protein, designated SepF, which is conserved in Gram-positive bacteria. SepF accumulates at the cell division site in an FtsZ-dependent manner and is required for proper septum formation []. Mutants are viable but the formation of the septum is much slower and occurs with a very abnormal morphology. This entry also includes archaeal related proteins of unknown function.; GO: 0000917 barrier septum formation; PDB: 3P04_A.
Probab=24.61 E-value=1.6e+02 Score=22.09 Aligned_cols=36 Identities=22% Similarity=0.307 Sum_probs=25.0
Q ss_pred HHHHHHHHHhccCeEEEEEeCCCCcHHHHHHHHHccC
Q 021064 14 YDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRG 50 (318)
Q Consensus 14 ~v~el~e~l~~y~~v~iv~~~~v~s~qlq~IR~~Lr~ 50 (318)
-+.++.+.+.+. .++++|++++..++.+++-..+.|
T Consensus 11 D~~~i~~~l~~g-~~Vivnl~~l~~~~~~Ri~Dfl~G 46 (73)
T PF04472_consen 11 DAREIVDALREG-KIVIVNLENLDDEEAQRILDFLSG 46 (73)
T ss_dssp GHHHHHHHHHTT---EEEE-TTS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC-CEEEEECCCCCHHHHHHHHHHHhc
Confidence 344566666665 566999999999999999888886
No 50
>PF13625 Helicase_C_3: Helicase conserved C-terminal domain
Probab=24.43 E-value=2.4e+02 Score=23.21 Aligned_cols=105 Identities=17% Similarity=0.230 Sum_probs=63.9
Q ss_pred EEEecCeEEee-cCcccChhHHHHHHHhCCC--c---cccccceeeeeccCcccCCCcccCChHHHHHHHHHHHHHHHHH
Q 021064 155 VEIITPVELIR-KGDKVGSSEAALLAKLGIR--P---FSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTAL 228 (318)
Q Consensus 155 I~I~~d~~v~k-~Ge~v~~~qA~LL~~L~I~--p---~~~~l~l~~~~~~g~~~~~~~L~i~~e~~~~~~~~a~~~a~~l 228 (318)
++|..|..++= +| ..+++++..|..+-=. + .+|++.-. +++.+-...++.|++.+.+.+
T Consensus 2 liVqpd~~I~v~~~-~~~~~~~~~L~~fae~~s~~~~~~yrlT~~------Sl~~A~~~G~~~e~i~~~L~~-------- 66 (129)
T PF13625_consen 2 LIVQPDFEILVEPG-HPSPADAWFLARFAELKSPDTMHVYRLTPA------SLWRAASAGLTAEEIIEFLER-------- 66 (129)
T ss_pred EEECCCCEEEEeCC-CCCHHHHHHHHHHhcccccCceEEEEECHH------HHHHHHHcCCCHHHHHHHHHH--------
Confidence 45666766665 54 4455666666554322 1 23333322 223333344566666655443
Q ss_pred hhhcCCCCccchhhHHHHHHHHHHhhhhhc-Cc--cCCChHhHHHHhhcCC
Q 021064 229 ALAISYPTLAAAPHMFVNAYKNVVAVALAT-EY--SFPQADKVKEYLAVCI 276 (318)
Q Consensus 229 s~~~~ypt~~s~p~~i~~a~~~a~ala~~~-~~--~~~~~~~~~~~l~~~~ 276 (318)
-..+|-|+++...|....++.-.+.... .+ ...+.+.+++++++|.
T Consensus 67 --~S~~~lP~~v~~~i~~w~~~~g~v~l~~~~~~l~~~d~~~l~~l~~~~~ 115 (129)
T PF13625_consen 67 --YSKNPLPQNVEQSIEDWARRYGRVRLYKGAYLLECDDPELLDELLADPE 115 (129)
T ss_pred --HcCCCCCHHHHHHHHHHHHhcCCEEEecCeEEEEECCHHHHHHHHhChh
Confidence 3378889999999999999887777765 22 4566677888888875
No 51
>cd05796 Ribosomal_P0_like Ribosomal protein L10 family, P0-like protein subfamily; composed of uncharacterized eukaryotic proteins with similarity to the 60S ribosomal protein P0, including the Saccharomyces cerevisiae protein called mRNA turnover protein 4 (MRT4). MRT4 may be involved in mRNA decay. P0 forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. It occupies the L7/L12 stalk of the ribosome. The stalk is known to contain the binding site for elongation factors EF-G and EF-Tu; however, there is disagreement as to whether or not P0 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, P0 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WAS
Probab=24.15 E-value=3.7e+02 Score=23.34 Aligned_cols=112 Identities=12% Similarity=0.117 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHhccCeEEEEE-------eCCCCc----HHHHHHHHHccCCcEEEEEehHHH--HHHHhhchhhcCC-cc
Q 021064 12 IAYDAKLCQLLEEYTQILVAA-------ADNVGS----NQLQNIRRGLRGDSVVLMGKNTMM--KRTIRMHAEKTGN-TA 77 (318)
Q Consensus 12 ~~~v~el~e~l~~y~~v~iv~-------~~~v~s----~qlq~IR~~Lr~~a~~~vgKNtL~--r~AL~~~~~~~~~-~~ 77 (318)
...+.+||..+... .+++.. +.+... ..+..|-..|+|+.-+.+.+.... ++.|.+.....+. .|
T Consensus 30 ~~ql~~iR~~lr~~-~~~v~KNtl~~~Al~~~~~~~~~~~~~~L~~~l~G~~~lift~~dp~~v~k~l~~~~~~~~ar~G 108 (163)
T cd05796 30 NNKLKDIRQEWKDS-RFFFGKNKVMQVALGRTPEDEYKPNLHKLSKYLKGQVGLLFTNEPPEEVIEYFDSYSEPDFARAG 108 (163)
T ss_pred HHHHHHHHHHhcCC-EEEEEchHHHHHHHhhCccccccccHHHHHHHhCCCEEEEEECCCHHHHHHHHHHcCCcccccCC
Confidence 45678889988876 444431 112211 127788888998877878765333 3344443222221 11
Q ss_pred ----cccccccccCceEEEEecCChHHHHHHHHhhccCccccCCC--CCCceEEECCCCC
Q 021064 78 ----FLNLIPLLQGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGL--VAPIDVVVPPGNT 131 (318)
Q Consensus 78 ----l~~L~~~L~G~~gLiFTn~dp~ev~k~l~~~k~~~~Ak~G~--iA~~dVvIp~G~t 131 (318)
.+-..+ .|++ ...|..+...|.+...|+...-|. |..+.+++.+|..
T Consensus 109 ~iA~~dvvi~--~G~~-----~~~p~~~~~~~~~lgiptki~~G~I~i~~d~~v~k~G~~ 161 (163)
T cd05796 109 SIATETVTLP--EGPL-----EQFPHSMEPQLRKLGLPTKLKKGVITLEADYVVCEEGKV 161 (163)
T ss_pred CCCCceEEEe--CCCC-----CCCCCCcchHHHHcCCCeEEeCCEEEEecCcEEECCCCC
Confidence 111112 3544 345666666999999999999996 7888889999975
No 52
>PRK10343 RNA-binding protein YhbY; Provisional
Probab=23.38 E-value=4e+02 Score=21.53 Aligned_cols=76 Identities=11% Similarity=0.140 Sum_probs=52.2
Q ss_pred HHHHHHHHhccCeEEEEEeCCCCcHHHHHHHHHccCC--cEEEEEehHHHH--HHHhhchhhcCCcccccccccccCceE
Q 021064 15 DAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGD--SVVLMGKNTMMK--RTIRMHAEKTGNTAFLNLIPLLQGNVG 90 (318)
Q Consensus 15 v~el~e~l~~y~~v~iv~~~~v~s~qlq~IR~~Lr~~--a~~~vgKNtL~r--~AL~~~~~~~~~~~l~~L~~~L~G~~g 90 (318)
-..|+.+-..-+-++.+.=.|++-+-+.++++.|... .++++.+|.--. -+.+...+.. -.++.. .-|+++
T Consensus 8 r~~LR~~ah~l~Pvv~IGk~Glt~~vi~ei~~aL~~hELIKvkv~~~~~~~~~e~~~~i~~~~----~ae~Vq-~IG~~~ 82 (97)
T PRK10343 8 KQHLKGLAHPLKPVVLLGSNGLTEGVLAEIEQALEHHELIKVKIATEDRETKTLIVEAIVRET----GACNVQ-VIGKTL 82 (97)
T ss_pred HHHHHHhcCCCCCeEEECCCCCCHHHHHHHHHHHHHCCcEEEEecCCChhHHHHHHHHHHHHH----CCEEEe-eeCcEE
Confidence 3468888889999999999999999999999999854 577777776432 1122221111 112333 359999
Q ss_pred EEEec
Q 021064 91 LIFTK 95 (318)
Q Consensus 91 LiFTn 95 (318)
++|-.
T Consensus 83 vlYR~ 87 (97)
T PRK10343 83 VLYRP 87 (97)
T ss_pred EEEec
Confidence 99954
No 53
>PF03993 DUF349: Domain of Unknown Function (DUF349); InterPro: IPR007139 This motif is found singly or as up to five tandem repeats in a small set of bacterial proteins. There are two or three alpha-helices, and possibly a beta-strand.
Probab=22.73 E-value=51 Score=24.38 Aligned_cols=38 Identities=16% Similarity=0.140 Sum_probs=30.2
Q ss_pred ccHHHHHHHHHHHHHHHhccCeEEEEEeCCCCcHHHHHHHHHccC
Q 021064 6 SKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRG 50 (318)
Q Consensus 6 k~~e~K~~~v~el~e~l~~y~~v~iv~~~~v~s~qlq~IR~~Lr~ 50 (318)
.+.+.|.+++++++++...-+ -+-..+.+++|++.|+.
T Consensus 31 ~n~~~K~~Li~~~~~l~~~~d-------~~~~~~~~k~l~~~Wk~ 68 (77)
T PF03993_consen 31 ENLEKKEALIEEAEALAESED-------WKEAAEEIKELQQEWKE 68 (77)
T ss_pred HHHHHHHHHHHHHHHhccccc-------HHHHHHHHHHHHHHHHH
Confidence 356789999999998887665 34447889999999985
No 54
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=22.34 E-value=3.1e+02 Score=22.85 Aligned_cols=66 Identities=15% Similarity=0.217 Sum_probs=46.6
Q ss_pred cHHHHHHHHHccC--CcEEEEEehHHHHHHHhhchhhcCCcccccccccccCceEEEEecCChHHHHHHHHhhccC
Q 021064 38 SNQLQNIRRGLRG--DSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLKEVKEEVAKYKVG 111 (318)
Q Consensus 38 s~qlq~IR~~Lr~--~a~~~vgKNtL~r~AL~~~~~~~~~~~l~~L~~~L~G~~gLiFTn~dp~ev~k~l~~~k~~ 111 (318)
.++.+++.+.||- +.-+++.|..--.-+.=+. +.+..+.++|+--++|-+..-.|-+|+..+.++.
T Consensus 6 i~d~KdfKKLLRTr~NVLvLy~ks~k~a~~~Lk~--------~~~~A~~vkG~gT~~~vdCgd~e~kKLCKKlKv~ 73 (112)
T cd03067 6 ISDHKDFKKLLRTRNNVLVLYSKSAKSAEALLKL--------LSDVAQAVKGQGTIAWIDCGDSESRKLCKKLKVD 73 (112)
T ss_pred ccchHHHHHHHhhcCcEEEEEecchhhHHHHHHH--------HHHHHHHhcCceeEEEEecCChHHHHHHHHHccC
Confidence 3567888889984 3555666665433322222 5566777899988999888888999999998885
No 55
>smart00460 TGc Transglutaminase/protease-like homologues. Transglutaminases are enzymes that establish covalent links between proteins. A subset of transglutaminase homologues appear to catalyse the reverse reaction, the hydrolysis of peptide bonds. Proteins with this domain are both extracellular and intracellular, and it is likely that the eukaryotic intracellular proteins are involved in signalling events.
Probab=22.29 E-value=54 Score=23.22 Aligned_cols=17 Identities=24% Similarity=0.600 Sum_probs=14.7
Q ss_pred hhhhhhcCcceEEecce
Q 021064 138 TSFFQVLNIPTKINKGT 154 (318)
Q Consensus 138 ~s~fqkLgIptki~kG~ 154 (318)
..+++.+|||+++..|-
T Consensus 17 ~~llr~~GIpar~v~g~ 33 (68)
T smart00460 17 VALLRSLGIPARVVSGY 33 (68)
T ss_pred HHHHHHCCCCeEEEeee
Confidence 46889999999999875
No 56
>COG0303 MoeA Molybdopterin biosynthesis enzyme [Coenzyme metabolism]
Probab=21.93 E-value=1.3e+02 Score=30.45 Aligned_cols=112 Identities=20% Similarity=0.195 Sum_probs=63.1
Q ss_pred cCeEEeecCcccChhHHHHHHHhCCCccccccce-eeeeccC-cccCCC-------cccCChHHHHHHHHHHHHHHHHHh
Q 021064 159 TPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVV-QSVYENG-SVYSPE-------VLDLSEDDLVEKFASSVSMVTALA 229 (318)
Q Consensus 159 ~d~~v~k~Ge~v~~~qA~LL~~L~I~p~~~~l~l-~~~~~~g-~~~~~~-------~L~i~~e~~~~~~~~a~~~a~~ls 229 (318)
...+++++|.+|++.+..+|.-+||.-.+..=++ .++...| ++.++. +.+-+--. +...++++-.-.
T Consensus 144 ~G~vil~~G~~L~p~~i~llas~Gi~~V~V~rkprV~IisTGdELv~~~~~l~~gqI~dsN~~~----l~a~l~~~G~e~ 219 (404)
T COG0303 144 KGDVILRAGTRLTPAEIALLASLGIAEVKVYRKPRVAIISTGDELVEPGQPLEPGQIYDSNSYM----LAALLERAGGEV 219 (404)
T ss_pred CCCEeecCCCCcCHHHHHHHHhCCCceEEEecCCEEEEEecCccccCCCCCCCCCeEEecCHHH----HHHHHHHcCCce
Confidence 3456999999999999999999999987655444 4455555 344444 33333222 222222222222
Q ss_pred hhcCCC--CccchhhHHHHHHHHHHhhhhhcCccCCChHhHHHHhhc
Q 021064 230 LAISYP--TLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLAV 274 (318)
Q Consensus 230 ~~~~yp--t~~s~p~~i~~a~~~a~ala~~~~~~~~~~~~~~~~l~~ 274 (318)
...|.. .++.+...|.+|..++=.+-.-.|-..-+.+-+++++++
T Consensus 220 ~~~giv~Dd~~~l~~~i~~a~~~~DviItsGG~SvG~~D~v~~~l~~ 266 (404)
T COG0303 220 VDLGIVPDDPEALREAIEKALSEADVIITSGGVSVGDADYVKAALER 266 (404)
T ss_pred eeccccCCCHHHHHHHHHHhhhcCCEEEEeCCccCcchHhHHHHHHh
Confidence 233332 224444555555554333444445555567778888874
No 57
>PF04225 OapA: Opacity-associated protein A LysM-like domain; InterPro: IPR007340 This entry includes the Haemophilus influenzae opacity-associated protein. This protein is required for efficient nasopharyngeal mucosal colonization, and its expression is associated with a distinctive transparent colony phenotype. OapA is thought to be a secreted protein, and its expression exhibits high-frequency phase variation [].; PDB: 2GU1_A.
Probab=21.24 E-value=55 Score=25.58 Aligned_cols=45 Identities=16% Similarity=0.293 Sum_probs=21.1
Q ss_pred ceEEECCCCCCCCCCchhhhhhcCcceEEecceEEEe---cCeEEeecCcccC
Q 021064 122 IDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEII---TPVELIRKGDKVG 171 (318)
Q Consensus 122 ~dVvIp~G~t~~~P~~~s~fqkLgIptki~kG~I~I~---~d~~v~k~Ge~v~ 171 (318)
.+.+|++|+| +...|+++|+|..-.--.++.. +...-+++|+.|.
T Consensus 3 ~~~~V~~GDt-----Ls~iF~~~gls~~dl~~v~~~~~~~k~L~~L~pGq~l~ 50 (85)
T PF04225_consen 3 QEYTVKSGDT-----LSTIFRRAGLSASDLYAVLEADGEAKPLTRLKPGQTLE 50 (85)
T ss_dssp -EEE--TT-------HHHHHHHTT--HHHHHHHHHHGGGT--GGG--TT-EEE
T ss_pred cEEEECCCCc-----HHHHHHHcCCCHHHHHHHHhccCccchHhhCCCCCEEE
Confidence 4678999998 6788999999987543222221 2245567777743
No 58
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=20.81 E-value=2.7e+02 Score=26.43 Aligned_cols=93 Identities=14% Similarity=0.115 Sum_probs=54.9
Q ss_pred CeEEEEEeCCCC---cHHHHHHHHHccC---CcEEEEEehHHHHHHHhhchhhcCCcccccccccccCceEEEEecCC--
Q 021064 26 TQILVAAADNVG---SNQLQNIRRGLRG---DSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGD-- 97 (318)
Q Consensus 26 ~~v~iv~~~~v~---s~qlq~IR~~Lr~---~a~~~vgKNtL~r~AL~~~~~~~~~~~l~~L~~~L~G~~gLiFTn~d-- 97 (318)
.-++++|..|-. ..++.++++.++. +-.++|.-=+.-...+.+. ++.+.+ .+-.++|||+.|
T Consensus 155 ~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~~~--------~~~f~~--~~~~~~I~TKlDet 224 (270)
T PRK06731 155 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEI--------ITNFKD--IHIDGIVFTKFDET 224 (270)
T ss_pred CCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHHHHH--------HHHhCC--CCCCEEEEEeecCC
Confidence 367788888765 5667778776653 2234443222211111111 112222 478899999865
Q ss_pred --hHHHHHHHHhhccC-ccccCCCCCCceEEECC
Q 021064 98 --LKEVKEEVAKYKVG-APARVGLVAPIDVVVPP 128 (318)
Q Consensus 98 --p~ev~k~l~~~k~~-~~Ak~G~iA~~dVvIp~ 128 (318)
...+..+...++.| .|.-.|+--|+|+....
T Consensus 225 ~~~G~~l~~~~~~~~Pi~~it~Gq~vp~di~~a~ 258 (270)
T PRK06731 225 ASSGELLKIPAVSSAPIVLMTDGQDVKKNIHIAT 258 (270)
T ss_pred CCccHHHHHHHHHCcCEEEEeCCCCCCcchhhCC
Confidence 56777777777665 46777777777765544
No 59
>PRK01777 hypothetical protein; Validated
Probab=20.54 E-value=74 Score=25.57 Aligned_cols=32 Identities=9% Similarity=-0.088 Sum_probs=21.8
Q ss_pred cccCCCCCCceEEECCCCCCCCCCchhhhhhcCcceE
Q 021064 113 PARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTK 149 (318)
Q Consensus 113 ~Ak~G~iA~~dVvIp~G~t~~~P~~~s~fqkLgIptk 149 (318)
||.+..-.+..+.+|+|.| ...-++++||+..
T Consensus 10 ya~~~~~~~~~l~vp~GtT-----v~dal~~sgi~~~ 41 (95)
T PRK01777 10 YALPERQYLQRLTLQEGAT-----VEEAIRASGLLEL 41 (95)
T ss_pred EECCCceEEEEEEcCCCCc-----HHHHHHHcCCCcc
Confidence 4555555667888999987 3355677777665
Done!