Query 021064
Match_columns 318
No_of_seqs 228 out of 1248
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 12:13:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021064.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021064hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz5_s 60S acidic ribosomal pr 100.0 1.5E-83 5.3E-88 614.4 19.1 278 1-278 1-278 (319)
2 3u5i_q A0, L10E, 60S acidic ri 100.0 4.2E-82 1.5E-86 602.8 12.8 271 6-278 3-273 (312)
3 2zkr_g 60S acidic ribosomal pr 100.0 2.6E-81 9E-86 598.5 -1.8 274 1-277 1-274 (317)
4 3j21_k Acidic ribosomal protei 100.0 1.1E-77 3.7E-82 578.8 15.2 269 6-276 3-273 (339)
5 1vq8_G Acidic ribosomal protei 100.0 7.1E-75 2.4E-79 559.5 3.4 267 4-277 9-276 (348)
6 3a1y_G Acidic ribosomal protei 100.0 5.7E-73 2E-77 534.5 13.4 269 5-275 2-272 (284)
7 3jsy_A Acidic ribosomal protei 100.0 1.1E-65 3.8E-70 466.7 14.3 210 8-217 2-212 (213)
8 2j01_J 50S ribosomal protein L 99.9 1E-21 3.4E-26 172.6 10.6 95 7-110 2-98 (173)
9 1zav_A 50S ribosomal protein L 99.8 4.7E-21 1.6E-25 169.3 10.7 97 7-110 4-105 (180)
10 3sgf_H 50S ribosomal protein L 99.8 8.8E-22 3E-26 171.8 -1.2 98 6-110 3-101 (165)
11 3a1y_G Acidic ribosomal protei 99.1 2.2E-10 7.6E-15 107.6 9.0 230 12-258 35-283 (284)
12 1vq8_G Acidic ribosomal protei 99.0 2.2E-11 7.5E-16 117.4 0.0 153 95-259 132-286 (348)
13 3j21_k Acidic ribosomal protei 99.0 7.4E-11 2.5E-15 113.4 2.6 227 13-258 36-283 (339)
14 3u5i_q A0, L10E, 60S acidic ri 98.3 1.1E-07 3.7E-12 90.5 0.2 215 12-246 35-269 (312)
15 3iz5_s 60S acidic ribosomal pr 98.1 6.6E-07 2.3E-11 85.3 1.5 214 13-247 39-275 (319)
16 2zkr_g 60S acidic ribosomal pr 97.8 4.5E-06 1.5E-10 79.5 0.8 188 40-247 74-272 (317)
17 3jsy_A Acidic ribosomal protei 93.5 0.093 3.2E-06 46.9 5.6 151 12-176 32-203 (213)
18 1dl0_A J-atracotoxin-HV1C; neu 48.7 4.5 0.00015 25.6 0.4 11 304-314 9-19 (37)
19 2eo2_A Adult MALE hypothalamus 36.0 16 0.00056 26.9 1.8 44 129-188 25-68 (71)
20 1d7q_A Translation initiation 35.3 13 0.00043 31.2 1.2 51 146-197 60-121 (143)
21 1xao_A YDJ1, mitochondrial pro 28.7 91 0.0031 24.5 5.3 59 122-183 36-97 (121)
22 3hg9_A PILM; structural genomi 27.0 43 0.0015 27.4 3.1 69 80-168 56-126 (131)
23 3i38_A Putative chaperone DNAJ 26.5 45 0.0015 26.0 3.1 55 122-182 40-94 (109)
24 2dgy_A MGC11102 protein; EIF-1 22.7 25 0.00086 28.0 0.9 43 146-189 44-98 (111)
25 3gdw_A Sigma-54 interaction do 20.6 1.1E+02 0.0039 24.7 4.5 51 13-64 46-102 (139)
No 1
>3iz5_s 60S acidic ribosomal protein P0 (L10P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_s
Probab=100.00 E-value=1.5e-83 Score=614.40 Aligned_cols=278 Identities=79% Similarity=1.217 Sum_probs=256.7
Q ss_pred CCcccccHHHHHHHHHHHHHHHhccCeEEEEEeCCCCcHHHHHHHHHccCCcEEEEEehHHHHHHHhhchhhcCCccccc
Q 021064 1 MVVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLN 80 (318)
Q Consensus 1 m~~~kk~~e~K~~~v~el~e~l~~y~~v~iv~~~~v~s~qlq~IR~~Lr~~a~~~vgKNtL~r~AL~~~~~~~~~~~l~~ 80 (318)
|+.++.+++||+++|++|++++++|++++|+||+||+++|+++||+.||++++++|||||||++||+++.++++.+++++
T Consensus 1 m~~~~~~~e~K~~~v~el~e~l~~y~~v~vv~~~gl~v~ql~~LR~~lR~~~~~~V~KNTL~r~Al~~~~e~~~~~~le~ 80 (319)
T 3iz5_s 1 MAIKRTKAEKKVAYDKKLCQLLDEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNTLIRRCIKVHADNTGNKEFLE 80 (319)
T ss_dssp CCCCSSSCCCSSHHHHHHHHHHHHCSEEEEEECTTSCHHHHHHHHHHHHHHSCEECCSTTTCCHHHHHHHSSSCCSSSSS
T ss_pred CCCccchHHHHHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHHHhCCcEEEEEhHHHHHHHHhhchhhhccccHHH
Confidence 55478889999999999999999999999999999999999999999997789999999999999999987777778999
Q ss_pred ccccccCceEEEEecCChHHHHHHHHhhccCccccCCCCCCceEEECCCCCCCCCCchhhhhhcCcceEEecceEEEecC
Q 021064 81 LIPLLQGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITP 160 (318)
Q Consensus 81 L~~~L~G~~gLiFTn~dp~ev~k~l~~~k~~~~Ak~G~iA~~dVvIp~G~t~~~P~~~s~fqkLgIptki~kG~I~I~~d 160 (318)
|.++|+|++||+|||+||.+++++|.+|++++|||+|++||+||+||+|+|+|+|+++||||+|||||+|++|+|+|.+|
T Consensus 81 L~~~L~G~~gl~FT~~dp~~v~k~l~~~k~~~pAr~GaiAp~dV~VpaG~tg~~P~~~s~fq~LgiptkI~kG~I~I~~d 160 (319)
T 3iz5_s 81 LMPLLVGNVGLIFTKGDLKEVREEVAKYKVGAPARVGLVAPVDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITP 160 (319)
T ss_dssp SSCCCCTTEEEEEESSCHHHHHHHHHHSCEEECCCTTCBCSSCEEECCEECCCCSSCTHHHHHHTCCEEEETTEEEECSC
T ss_pred HHHHhcCCeEEEEECCChHHHHHHHHHccccccccCCCcCCceEEECCCCCCCCCcchHHHHHcCCceEEecCeEEEcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEeecCcccChhHHHHHHHhCCCccccccceeeeeccCcccCCCcccCChHHHHHHHHHHHHHHHHHhhhcCCCCccch
Q 021064 161 VELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAA 240 (318)
Q Consensus 161 ~~v~k~Ge~v~~~qA~LL~~L~I~p~~~~l~l~~~~~~g~~~~~~~L~i~~e~~~~~~~~a~~~a~~ls~~~~ypt~~s~ 240 (318)
++||++||+||++||+||++|||+|++|++.|+++||+|.+|++++|+||+|+|+++|++|++++++||+++||||++|+
T Consensus 161 ~~v~k~G~~v~~~~A~lL~~l~i~p~~f~l~l~~~~d~g~i~~~~vL~i~~e~~~~~~~~~~~~~~~lsl~~~ypt~~s~ 240 (319)
T 3iz5_s 161 VELIKKGDKVGSSESALLAKLGIRPFSYGLVITNVYDSGSVFSPEVLDLTEDDLMEKFASGVSMVASVSLAISYPTIAAA 240 (319)
T ss_dssp EEEECTTSBCCHHHHHHHHHHTCCCEEESCEEEEEEETTEEECHHHHSCCCHHHHHHHHHHHHHHHHHHHHHTCCSTTTH
T ss_pred eEEEecCCCcCHHHHHHHHHhCCCceEEEeeeeEEEeCCceeCHHHcCCCHHHHHHHHHHHHHHHHHHHHHhCCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhhhhhcCccCCChHhHHHHhhcCCCC
Q 021064 241 PHMFVNAYKNVVAVALATEYSFPQADKVKEYLAVCISC 278 (318)
Q Consensus 241 p~~i~~a~~~a~ala~~~~~~~~~~~~~~~~l~~~~~~ 278 (318)
||+|.|||++++|||++++|+||+++++|++|+||++-
T Consensus 241 ~~~i~~a~k~~~ala~~~~~~~~~~e~ik~~l~~p~~~ 278 (319)
T 3iz5_s 241 PHMFLNGYKNVLAVAVETEYSYPHADKIKEYLKDPSKF 278 (319)
T ss_dssp HHHHHHHHHHHHHHHSSSSCCC----------------
T ss_pred HHHHHHHHHHHHHHHHhcCcccCCchhHHHHHhhhhhh
Confidence 99999999999999999999999999999999999864
No 2
>3u5i_q A0, L10E, 60S acidic ribosomal protein P0; translation, ribosome, ribosomal R ribosomal protein, STM1; 3.00A {Saccharomyces cerevisiae} PDB: 4b6a_q 3izc_s 3izs_s 3j16_G* 3o5h_M 3jyw_8
Probab=100.00 E-value=4.2e-82 Score=602.84 Aligned_cols=271 Identities=42% Similarity=0.719 Sum_probs=138.0
Q ss_pred ccHHHHHHHHHHHHHHHhccCeEEEEEeCCCCcHHHHHHHHHccCCcEEEEEehHHHHHHHhhchhhcCCcccccccccc
Q 021064 6 SKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLL 85 (318)
Q Consensus 6 k~~e~K~~~v~el~e~l~~y~~v~iv~~~~v~s~qlq~IR~~Lr~~a~~~vgKNtL~r~AL~~~~~~~~~~~l~~L~~~L 85 (318)
.++++|+++|++|++++++|+.++|+||+||+++|+++||++||+.++++|+|||||++|++++.++ .+++++|.++|
T Consensus 3 ~~re~K~~~v~el~e~l~~~~~v~vv~~~gl~v~ql~~LR~~lR~~~~~~V~KNTL~r~Al~~~~~~--~~~le~L~~~L 80 (312)
T 3u5i_q 3 GIREKKAEYFAKLREYLEEYKSLFVVGVDNVSSQQMHEVRKELRGRAVVLMGKNTMVRRAIRGFLSD--LPDFEKLLPFV 80 (312)
T ss_dssp CHHHHHHHHHHHHHHHHHHCSEEEEEECSSCCHHHHHHHHHHHSSSCEEEECCHHHHHHHHHTTSSS--SCGGGGTGGGC
T ss_pred CcHHHHHHHHHHHHHHHHhCCEEEEEecCCCCHHHHHHHHHHHhcCceEEEeehHHHHHHHhhCccc--ccChHHHHHhc
Confidence 6799999999999999999999999999999999999999999988899999999999999997554 34599999999
Q ss_pred cCceEEEEecCChHHHHHHHHhhccCccccCCCCCCceEEECCCCCCCCCCchhhhhhcCcceEEecceEEEecCeEEee
Q 021064 86 QGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIR 165 (318)
Q Consensus 86 ~G~~gLiFTn~dp~ev~k~l~~~k~~~~Ak~G~iA~~dVvIp~G~t~~~P~~~s~fqkLgIptki~kG~I~I~~d~~v~k 165 (318)
+|++||+|||+||.+++++|.+|++++|||+|++||+||+||+|||+|+|+++||||+|||||+|++|+|+|.+|++||+
T Consensus 81 ~G~~gl~Ft~~dp~~v~k~l~~~k~~~pAr~GaiAp~dV~Ip~G~tg~~P~~~s~fq~Lgiptki~kG~I~I~~d~~v~k 160 (312)
T 3u5i_q 81 KGNVGFVFTNEPLTEIKNVIVSNRVAAPARAGAVAPEDIWVRAVNTGMEPGKTSFFQALGVPTKIARGTIEIVSDVKVVD 160 (312)
T ss_dssp CSSEEEEEESSCHHHHHHHHHTSSCCC-----------------------------------------------------
T ss_pred cCCEEEEEECCCHHHHHHHHHhccCcccccCCCcCCceEEECCCCCCCCCcchHHHHHcCCCeEeeCCEEEEccceEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccChhHHHHHHHhCCCccccccceeeeeccCcccCCCcccCChHHHHHHHHHHHHHHHHHhhhcCCCCccchhhHHH
Q 021064 166 KGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFV 245 (318)
Q Consensus 166 ~Ge~v~~~qA~LL~~L~I~p~~~~l~l~~~~~~g~~~~~~~L~i~~e~~~~~~~~a~~~a~~ls~~~~ypt~~s~p~~i~ 245 (318)
+||+||++||+||++|||+|++|++.|+++||+|.+|+|++|+||+|+|+++|++|++++++||+++||||++|+||+|.
T Consensus 161 ~G~~v~~~~A~lL~~l~i~p~~~~l~l~~~~d~g~i~~~~~L~i~~e~~~~~~~~~~~~~~~lsl~~~ypt~~s~~~~i~ 240 (312)
T 3u5i_q 161 AGNKVGQSEASLLNLLNISPFTFGLTVVQVYDNGQVFPXXXXXXXXXXXXXXXXXXXXXXXSISLAIGYPTLPSVGHTLI 240 (312)
T ss_dssp -----------------------CCEEEEEEESSCCCCSTTTSCCSSTTTHHHHHHHTTCC-------------------
T ss_pred CCCCcCHHHHHHHHHcCcCcEEEEEEEEEEecCCceeccccccccccccccccccchhhHhhhHHhhCCCcHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhcCccCCChHhHHHHhhcCCCC
Q 021064 246 NAYKNVVAVALATEYSFPQADKVKEYLAVCISC 278 (318)
Q Consensus 246 ~a~~~a~ala~~~~~~~~~~~~~~~~l~~~~~~ 278 (318)
|||++++|||++++|+||+++++|++|+||++-
T Consensus 241 ~a~k~~~a~a~~~~~~~~~~~~ik~~la~p~a~ 273 (312)
T 3u5i_q 241 NNYKDLLAVAIAASYHYPEIEDLVDRIENPEKY 273 (312)
T ss_dssp ---------------------------------
T ss_pred HHHHHHHHHHHhhcccCccchhHHHHHhChhhh
Confidence 999999999999999999999999999999864
No 3
>2zkr_g 60S acidic ribosomal protein P0; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=2.6e-81 Score=598.52 Aligned_cols=274 Identities=51% Similarity=0.853 Sum_probs=13.0
Q ss_pred CCcccccHHHHHHHHHHHHHHHhccCeEEEEEeCCCCcHHHHHHHHHccCCcEEEEEehHHHHHHHhhchhhcCCccccc
Q 021064 1 MVVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLN 80 (318)
Q Consensus 1 m~~~kk~~e~K~~~v~el~e~l~~y~~v~iv~~~~v~s~qlq~IR~~Lr~~a~~~vgKNtL~r~AL~~~~~~~~~~~l~~ 80 (318)
|+ ++++++||+++|++|++++++|+.++|+||+||+++|+++||++||+.++++|+|||||++||+++.+. .+++++
T Consensus 1 ~~-~~~~~e~K~~~V~eL~e~l~~~~~v~vvd~~gl~v~ql~~LR~~lR~~~~~~V~KNTL~r~Al~~~~~~--~~~~e~ 77 (317)
T 2zkr_g 1 MP-REDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHLEN--NPALEK 77 (317)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CC-ccchHHHHHHHHHHHHHHHHhCCEEEEEECCCCCHHHHHHHHHHHhcCcEEEEEeHHHHHHHHhhCccc--ccchhh
Confidence 66 777899999999999999999999999999999999999999999988999999999999999998543 345999
Q ss_pred ccccccCceEEEEecCChHHHHHHHHhhccCccccCCCCCCceEEECCCCCCCCCCchhhhhhcCcceEEecceEEEecC
Q 021064 81 LIPLLQGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITP 160 (318)
Q Consensus 81 L~~~L~G~~gLiFTn~dp~ev~k~l~~~k~~~~Ak~G~iA~~dVvIp~G~t~~~P~~~s~fqkLgIptki~kG~I~I~~d 160 (318)
|.++|+|++||+||++||.+++++|.+|++++|||+|++||+||+||+|+|+|+|+++++||+|||||+|++|+|+|.+|
T Consensus 78 L~~~L~G~~al~Ft~~Dp~~vaK~l~~f~~~~pAr~GaiAp~dV~Ip~G~t~~~p~~~~~fq~LgipTkI~kG~I~i~~d 157 (317)
T 2zkr_g 78 LLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSD 157 (317)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhccCCCEEEEEECCCHHHHHHHHHHhCccchhccCCcCCceEEeCCCCCCCCCcchHHHHHcCCCeEeeCCeEEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEeecCcccChhHHHHHHHhCCCccccccceeeeeccCcccCCCcccCChHHHHHHHHHHHHHHHHHhhhcCCCCccch
Q 021064 161 VELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAA 240 (318)
Q Consensus 161 ~~v~k~Ge~v~~~qA~LL~~L~I~p~~~~l~l~~~~~~g~~~~~~~L~i~~e~~~~~~~~a~~~a~~ls~~~~ypt~~s~ 240 (318)
++||++||+||++||+||++|||+|++|++.++++||+|.+|+|++|+||+|+|.++|++|++++++||+++||||++|+
T Consensus 158 ~~v~k~G~~v~~~~A~lL~~l~i~p~~~~l~l~~~~d~g~~~~~~~L~i~~e~~~~~~~~~~~~~~~lsl~~~~pt~~s~ 237 (317)
T 2zkr_g 158 VQLIKTGDKVGASEATLLNMLNISPFSFGLVIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASV 237 (317)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eEEecCCCCcCHHHHHHHHHcCCCceeeeeeeeEEEecCcccchHhccCCHHHHHHHHHHHHHHHHHHHHHhCCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhhhhhcCccCCChHhHHHHhhcCCC
Q 021064 241 PHMFVNAYKNVVAVALATEYSFPQADKVKEYLAVCIS 277 (318)
Q Consensus 241 p~~i~~a~~~a~ala~~~~~~~~~~~~~~~~l~~~~~ 277 (318)
||+|.|||+++++||++++|+||+++++|++|+||++
T Consensus 238 ~~~i~~a~~~~~ala~~~~~~~~ea~~vk~~l~~~~~ 274 (317)
T 2zkr_g 238 PHSIINGYKRVLALSVETDYTFPLAEKVKAFLADPSA 274 (317)
T ss_dssp -----------------------CHHHHHTTTHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcccChhhhhhHHHHHhccCc
Confidence 9999999999999999999999999999999999974
No 4
>3j21_k Acidic ribosomal protein P0 homolog; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=1.1e-77 Score=578.78 Aligned_cols=269 Identities=26% Similarity=0.481 Sum_probs=206.5
Q ss_pred ccHHHHHHHHHHHHHHHhccCeEEEEEeCCCCcHHHHHHHHHccCC-cEEEEEehHHHHHHHhhchhhcCCccccccccc
Q 021064 6 SKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGD-SVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPL 84 (318)
Q Consensus 6 k~~e~K~~~v~el~e~l~~y~~v~iv~~~~v~s~qlq~IR~~Lr~~-a~~~vgKNtL~r~AL~~~~~~~~~~~l~~L~~~ 84 (318)
+.++||+++|++|++++++|++++|++|+||+++|+++||+.||+. ++|+|||||||++|++++.++++.+++++|.++
T Consensus 3 ~~~e~K~~~v~el~e~l~~~~~v~v~~~~gl~v~ql~~lR~~lr~~g~~~~v~KNtL~r~Al~~~~~~e~~~~l~~L~~~ 82 (339)
T 3j21_k 3 HVAEWKKKEVEELANLIKSYPVVALVDVSSMPAYPLSQMRRLIRENNGLLRVSRNTLIELAIKKVAQELGKPELEKLINY 82 (339)
T ss_dssp ---CCTTTHHHHHHHHHHHSSEEEEEECTTCCTTHHHHHHHHHHHTTEEEECCHHHHSCHHHHHHHSSCCCSSSSSSSCC
T ss_pred ccHHHHHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHHHhcCCeEEEEEhHHHHHHHHhcChhhhccccHHHHHHH
Confidence 6789999999999999999999999999999999999999999976 899999999999999999877788889999999
Q ss_pred ccCceEEEEecCChHHHHHHHHhhccCccccCCCCCCceEEECCCCCCCCCCch-hhhhhcCcceEEecceEEEecCeEE
Q 021064 85 LQGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDPSQT-SFFQVLNIPTKINKGTVEIITPVEL 163 (318)
Q Consensus 85 L~G~~gLiFTn~dp~ev~k~l~~~k~~~~Ak~G~iA~~dVvIp~G~t~~~P~~~-s~fqkLgIptki~kG~I~I~~d~~v 163 (318)
|+|++||+|||+||.+++++|.+|++++|||+|++||+||+||+|||++.|+++ ++||+|||||+|++|+|+|.+|++|
T Consensus 83 L~G~~~l~Ft~~dp~~v~k~l~~~~~~~~Ar~GaiAp~dV~Ip~G~t~~~p~~~~~~fq~lgiptki~~G~I~i~~d~~v 162 (339)
T 3j21_k 83 IEGGAGILVTTMNPFKLYKFLQQNRQPAPAKPGAKVPKDVVIPAGPTSLAPGPIVGQMQAMGIPARIERGKVTIQKDTVV 162 (339)
T ss_dssp CCTTEEEEEESSCHHHHHHHHHHSCCCCCCCTTCBCSSCEEECCEECSCCSSHHHHHHHHHTCCEEEETTEEEECSCEEE
T ss_pred hcCCeEEEEECCCHHHHHHHHHHcCCcccccCCCcCCceEEecCCCCCCCCCccHHHHHHcCCCeEeccCeEEEccceEE
Confidence 999999999999999999999999999999999999999999999999999995 9999999999999999999999999
Q ss_pred eecCcccChhHHHHHHHhCCCccccccceeeeeccCcccCCCcccCChHHHHHHHHHHHHHHHHHhhhcCCCCccchhhH
Q 021064 164 IRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHM 243 (318)
Q Consensus 164 ~k~Ge~v~~~qA~LL~~L~I~p~~~~l~l~~~~~~g~~~~~~~L~i~~e~~~~~~~~a~~~a~~ls~~~~ypt~~s~p~~ 243 (318)
|++||+||++||+||++|||+|++|++.++++|++|.+|+|++|+||+|+|.++|++|+++|++||+++||||++|+||+
T Consensus 163 ~k~G~~v~~~~A~lL~~l~i~p~~~~l~l~~~~~~g~i~~~~~L~i~~e~~~~~~~~a~~~a~~lsl~~~ypT~~svp~~ 242 (339)
T 3j21_k 163 LKAGEEITPELANILNALGIQPLEVGLDLLAVYEDGIIYTPDVLAIDESEYINMLQKAYMHAFNLAVNIAYPTPQTIEAI 242 (339)
T ss_dssp ECTTSBCCHHHHHHHHHHTCCCSCCSCEEEEEEETTEEECHHHHCCCHHHHHHHC-------------------------
T ss_pred EecCCCcCHHHHHHHHHcCCCcEEeeeeEEEEEeCCcEecHHhCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhcCccCCChHhHHHHhhcCC
Q 021064 244 FVNAYKNVVAVALATEYSFPQADKVKEYLAVCI 276 (318)
Q Consensus 244 i~~a~~~a~ala~~~~~~~~~~~~~~~~l~~~~ 276 (318)
|.|||+++++||++++|++| +.++++|.++.
T Consensus 243 i~~a~k~~lala~~~~~~~~--e~~~~~l~ka~ 273 (339)
T 3j21_k 243 IQKAFLNAKAVAVEAGYITK--ETISDIIGRAI 273 (339)
T ss_dssp ---------------------------------
T ss_pred HHHHHHHHHHHHhhcCCCCh--hhHHHHHHHHH
Confidence 99999999999999999999 56666666543
No 5
>1vq8_G Acidic ribosomal protein P0 homolog; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: j.84.1.1 PDB: 1k73_I* 1k8a_I* 1k9m_I* 1kc8_I* 1kd1_I* 1kqs_G* 1m1k_I* 1m90_I* 1n8r_I* 1nji_I* 1q7y_I* 1q81_I* 1q82_I* 1q86_I* 1qvf_G 1qvg_G 1s72_G* 1vq4_G* 1vq5_G* 1vq6_G* ...
Probab=100.00 E-value=7.1e-75 Score=559.47 Aligned_cols=267 Identities=26% Similarity=0.460 Sum_probs=28.3
Q ss_pred ccccHHHHHHHHHHHHHHHhccCeEEEEEeCCCCcHHHHHHHHHccCCcEEEEEehHHHHHHHhhchhhcCCcccccccc
Q 021064 4 KASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIP 83 (318)
Q Consensus 4 ~kk~~e~K~~~v~el~e~l~~y~~v~iv~~~~v~s~qlq~IR~~Lr~~a~~~vgKNtL~r~AL~~~~~~~~~~~l~~L~~ 83 (318)
+++.++||+++|++|++++++|+.++|++|+||+++|+++||+.||+.++|+|+|||||++||+++.. +++.|.+
T Consensus 9 ~k~~~e~K~~~V~eL~e~l~~~~~v~vvdy~GLtv~ql~~LR~~lR~~~~~~V~KNTL~r~Al~~~~~-----~le~L~~ 83 (348)
T 1vq8_G 9 TETIPEWKQEEVDAIVEMIESYESVGVVNIAGIPSRQLQDMRRDLHGTAELRVSRNTLLERALDDVDD-----GLEDLNG 83 (348)
T ss_dssp ---CCHHHHHHHHHHHHHHHC---------------------------------CHHHHHHHHTC---------------
T ss_pred ccccHHHHHHHHHHHHHHHHhCCEEEEEECCCCCHHHHHHHHHHHHhcceEEEeHHHHHHHHHHhCCc-----chHHHHH
Confidence 34678999999999999999999999999999999999999999998799999999999999998743 3889999
Q ss_pred cccCceEEEEecCChHHHHHHHHhhccCccccCCCCCCceEEECCCCCCCCCCch-hhhhhcCcceEEecceEEEecCeE
Q 021064 84 LLQGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDPSQT-SFFQVLNIPTKINKGTVEIITPVE 162 (318)
Q Consensus 84 ~L~G~~gLiFTn~dp~ev~k~l~~~k~~~~Ak~G~iA~~dVvIp~G~t~~~P~~~-s~fqkLgIptki~kG~I~I~~d~~ 162 (318)
+|+|++||+||++||.+++|+|.+|++++|||+|.+||+||+||+|+|+++|+++ ++||+|||||+|++|+|+|.+|++
T Consensus 84 ~LkG~tal~Ft~~Dp~~vaK~l~~f~~~~pAr~GaiAp~dV~IpaG~t~~~P~~~~~~fq~LgIPTkI~kG~I~I~~d~~ 163 (348)
T 1vq8_G 84 YITGQVGLIGTDDNPFSLFQELEASKTPAPIGAGEVAPNDIVIPEGDTGVDPGPFVGELQSVGADARIQEGSIQVLSDST 163 (348)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hccCCEEEEEeCCCHHHHHHHHHHhcccchhhcCCcCCceEEeCCCCCCCCCCchHHHHHHcCCCEEeccCceEecCceE
Confidence 9999999999999999999999999999999999999999999999999999996 999999999999999999999999
Q ss_pred EeecCcccChhHHHHHHHhCCCccccccceeeeeccCcccCCCcccCChHHHHHHHHHHHHHHHHHhhhcCCCCccchhh
Q 021064 163 LIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPH 242 (318)
Q Consensus 163 v~k~Ge~v~~~qA~LL~~L~I~p~~~~l~l~~~~~~g~~~~~~~L~i~~e~~~~~~~~a~~~a~~ls~~~~ypt~~s~p~ 242 (318)
||++||+||++||+||++|||+|++|++.++++|++|.+|++++|+||+|+|.++|++|++++++||+++||||++|+||
T Consensus 164 v~k~G~~v~~~~A~LL~~LgI~p~~f~l~l~~~~d~g~~~~~~vL~i~~e~~~~~~~~~~~~~~~lsl~~~ypt~~s~~~ 243 (348)
T 1vq8_G 164 VLDTGEEVSQELSNVLNELGIEPKEVGLDLRAVFADGVLFEPEELELDIDEYRSDIQAAAGRAFNLSVNADYPTATTAPT 243 (348)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EeeCCCCcCHHHHHHHHHcCCCceeeeeeeEEEEeCCcccCHHHccCCHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhcCccCCChHhHHHHhhcCCC
Q 021064 243 MFVNAYKNVVAVALATEYSFPQADKVKEYLAVCIS 277 (318)
Q Consensus 243 ~i~~a~~~a~ala~~~~~~~~~~~~~~~~l~~~~~ 277 (318)
+|.|||+++++||++++|+|| +.++++|+++.+
T Consensus 244 ~i~~a~~~~~ala~~~~~~~~--~~~~~il~kA~~ 276 (348)
T 1vq8_G 244 MLQSDRGNAKSLALQAAIEDP--EVVPDLVSKADA 276 (348)
T ss_dssp -----------------------------------
T ss_pred HHHHHHHHHHHHHHhcCcCCh--hhHHHHHHHHHH
Confidence 999999999999999999999 678888887754
No 6
>3a1y_G Acidic ribosomal protein P0; stalk, helix SPIN, ribonucleoprotein; 2.13A {Pyrococcus horikoshii}
Probab=100.00 E-value=5.7e-73 Score=534.52 Aligned_cols=269 Identities=28% Similarity=0.483 Sum_probs=189.5
Q ss_pred cccHHHHHHHHHHHHHHHhccCeEEEEEeCCCCcHHHHHHHHHccCC-cEEEEEehHHHHHHHhhchhhcCCcccccccc
Q 021064 5 ASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGD-SVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIP 83 (318)
Q Consensus 5 kk~~e~K~~~v~el~e~l~~y~~v~iv~~~~v~s~qlq~IR~~Lr~~-a~~~vgKNtL~r~AL~~~~~~~~~~~l~~L~~ 83 (318)
+++++||+++|++|++++++|+.++++||+|++++|+++||++||+. ++++|+|||||++|++++.++++.++++.|.+
T Consensus 2 ~~~~e~K~~~v~el~~~l~~~~~v~v~~~~gl~~~ql~~lR~~lr~~g~~~~v~KNtL~~~Al~~~~~~~~~~~~~~L~~ 81 (284)
T 3a1y_G 2 AHVAEWKKKEVEELAKLIKSYPVIALVDVSSMPAYPLSQMRRLIRENGGLLRVSRNTLIELAIKKAAKELGKPELEKLVE 81 (284)
T ss_dssp CSSCCCTTTHHHHHHHHHTTCSEEEEEECTTCCHHHHHHHHHHHHHTTEEEEECSSSSCCHHHHHHHTTCSCSSTTSSSC
T ss_pred CCcHHHHHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHHHHhcCcEEEEeHHHHHHHHHhhCccccccccHHHHhh
Confidence 46799999999999999999999999999999999999999999975 89999999999999999987777788999999
Q ss_pred cccCceEEEEecCChHHHHHHHHhhccCccccCCCCCCceEEECCCCCCCCCCch-hhhhhcCcceEEecceEEEecCeE
Q 021064 84 LLQGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDPSQT-SFFQVLNIPTKINKGTVEIITPVE 162 (318)
Q Consensus 84 ~L~G~~gLiFTn~dp~ev~k~l~~~k~~~~Ak~G~iA~~dVvIp~G~t~~~P~~~-s~fqkLgIptki~kG~I~I~~d~~ 162 (318)
+|+|++||+||++||.+++++|.+|+.++|||+|.+|++||+||+|+|++.|+++ ++||+|||||++++|+|+|.+|++
T Consensus 82 ~l~G~~al~Ft~~dp~~vak~l~~f~~~~~ar~Gaia~~dv~ip~g~~~~~p~~~~~~l~~LgIptki~~g~I~i~~d~~ 161 (284)
T 3a1y_G 82 YIDRGAGILVTNMNPFKLYKFLQQNRQPAPAKPGAVVPKDVVVPAGPTPLAPGPIVGQMQALGIPARIEKGKVTIQKDTT 161 (284)
T ss_dssp CCCTTEEEEEESSCHHHHHHHHHHCCCC----------------------------------------------------
T ss_pred hcCCCEEEEEECCCHHHHHHHHHHhcchhhhhcCCccceeEEecCCCCCCCCcchHHHHHHCCCCeEEecCeeEeecceE
Confidence 9999999999999999999999999999999999999999999999999988875 999999999999999999999999
Q ss_pred EeecCcccChhHHHHHHHhCCCccccccceeeeeccCcccCCCcccCChHHHHHHHHHHHHHHHHHhhhcCCCCccchhh
Q 021064 163 LIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPH 242 (318)
Q Consensus 163 v~k~Ge~v~~~qA~LL~~L~I~p~~~~l~l~~~~~~g~~~~~~~L~i~~e~~~~~~~~a~~~a~~ls~~~~ypt~~s~p~ 242 (318)
||++|++|+++||+||++|||+|++|+++++++|++|.+|++++|+||+|++...|++|+++|++||+++||||++|+||
T Consensus 162 v~~~G~~l~~~~a~lL~~L~i~~~~~~l~i~~~~~~~~~~~~~vl~i~~e~~~~~~~~a~~~a~~lsl~~~~pt~~s~~~ 241 (284)
T 3a1y_G 162 VLKAGEVITPELANILNALGIQPLEVGLDVLAVYEDGIVYTPDVLAIDEQEYIDMLQKAYMHAFNLAVNIAYPTPETIEA 241 (284)
T ss_dssp ---------------------CCCCCCCEEEEEEETTEEECHHHHSCCHHHHHHHHHHHHHHHHHHHHHHTCCCTTTHHH
T ss_pred EEecCCCcCHHHHHHHHHcCCCHHHHHHHHHHHhhccccCCHHHccCCHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhcCccCCChHhHHHHhhcC
Q 021064 243 MFVNAYKNVVAVALATEYSFPQADKVKEYLAVC 275 (318)
Q Consensus 243 ~i~~a~~~a~ala~~~~~~~~~~~~~~~~l~~~ 275 (318)
+|.|||++++|||++++|+|| +.++++|+++
T Consensus 242 ~i~ka~~~~~ala~~~~~~~~--~~~~~~~~ka 272 (284)
T 3a1y_G 242 IIQKAFLNAKTVAIEAGYITK--ETIQDIIGRA 272 (284)
T ss_dssp HHHHHHHHHHHHHHHTTCCCT--TTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCh--hhHHHHHHHH
Confidence 999999999999999999999 5777777654
No 7
>3jsy_A Acidic ribosomal protein P0 homolog; ribonucleoprotein; 1.60A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=1.1e-65 Score=466.69 Aligned_cols=210 Identities=30% Similarity=0.485 Sum_probs=204.8
Q ss_pred HHHHHHHHHHHHHHHhccCeEEEEEeCCCCcHHHHHHHHHccCCcEEEEEehHHHHHHHhhchhhcCCcccccccccccC
Q 021064 8 AEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQG 87 (318)
Q Consensus 8 ~e~K~~~v~el~e~l~~y~~v~iv~~~~v~s~qlq~IR~~Lr~~a~~~vgKNtL~r~AL~~~~~~~~~~~l~~L~~~L~G 87 (318)
++||+++|++|++++++|++++++||+|++++|+++||++||+.++++|||||||++|++++.++++.+++++|.++|+|
T Consensus 2 ~e~K~~~v~el~e~l~~~~~v~v~~~~gl~~~ql~~lR~~lr~~~~~~v~KNtL~r~Al~~~~~~e~~~~~~~L~~~l~G 81 (213)
T 3jsy_A 2 APWKIEEVKTLKGLIKSKPVVAIVDMMDVPAPQLQEIRDKIRDKVKLRMSRNTLIIRALKEAAEELNNPKLAELANYVER 81 (213)
T ss_dssp CHHHHHHHHHHHHHHHHSSEEEEEECCSCCHHHHHHHHHHHTTTEEEEECCHHHHHHHHHHHHHHTTCGGGGGGGGGCCS
T ss_pred chHHHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHHHhCCCEEEEEeHHHHHHHHhhchhhhcccchhHHHHhCcC
Confidence 48999999999999999999999999999999999999999988899999999999999999888888889999999999
Q ss_pred ceEEEEecCChHHHHHHHHhhccCccccCCCCCCceEEECCCCCCCCCCc-hhhhhhcCcceEEecceEEEecCeEEeec
Q 021064 88 NVGLIFTKGDLKEVKEEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRK 166 (318)
Q Consensus 88 ~~gLiFTn~dp~ev~k~l~~~k~~~~Ak~G~iA~~dVvIp~G~t~~~P~~-~s~fqkLgIptki~kG~I~I~~d~~v~k~ 166 (318)
++||+|||+||.+++++|.+|++++|||+|++||+||+||+|||++.|++ +++||+|||||+|++|+|+|.+|++||++
T Consensus 82 ~~~l~Ft~~dp~~v~k~l~~~~~~~~Ar~GaiAp~dV~ip~G~t~~~p~~~~~~~q~lgiptki~~G~I~i~~d~~v~k~ 161 (213)
T 3jsy_A 82 GAAILVTDMNPFKLYKLLEENKSPAPVRGGQIAPCDIKVEKGSTGMPPGPFLGELKSVGIPAAIEKGKIAIKEDKVVVKK 161 (213)
T ss_dssp SEEEEEESSCHHHHHHHHHHSCEEECCCTTCBCSSCEEECSEEEEECSSTHHHHHHHTTCCEEEETTEEEECSCEEEECT
T ss_pred CeEEEEeCCCHHHHHHHHHHcCCcccccCCCcCCceEEECCCCCCCCCCccHHHHHHcCCceEeecCeEEEccceEEEec
Confidence 99999999999999999999999999999999999999999999999999 59999999999999999999999999999
Q ss_pred CcccChhHHHHHHHhCCCccccccceeeeeccCcccCCCcccCChHHHHHH
Q 021064 167 GDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEK 217 (318)
Q Consensus 167 Ge~v~~~qA~LL~~L~I~p~~~~l~l~~~~~~g~~~~~~~L~i~~e~~~~~ 217 (318)
||+||++||+||++|||+|++|++.++++||+|.+|+|++|+||+|+|.++
T Consensus 162 G~~v~~~~A~lL~~l~i~p~~~~l~l~~~~~~g~i~~~~~L~i~~e~~~~~ 212 (213)
T 3jsy_A 162 GEVVSPKLAAVLDRLGIKPIKVGLNILAVYEDGIIYTPDVLKVDEEKLLAD 212 (213)
T ss_dssp TSBCCHHHHHHHHHTTCCCEEESCEEEEEEETTEEECHHHHHHHCSCTTSC
T ss_pred CCCcCHHHHHHHHHcCCCcEEEEEEEEEEEeCCceeCHHHcccCHHHHhhh
Confidence 999999999999999999999999999999999999999999999988754
No 8
>2j01_J 50S ribosomal protein L10; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} PDB: 2j03_J 3d5b_J 3d5d_J 3i8i_Y 3kir_J 3kit_J 3kiw_J 3kiy_J 3mrz_I 3ms1_I 3pyt_I 3pyr_I 3pyo_I 3pyv_I
Probab=99.86 E-value=1e-21 Score=172.56 Aligned_cols=95 Identities=15% Similarity=0.296 Sum_probs=89.8
Q ss_pred cHHHHHHHHHHHHHHHhccC-eEEEEEeCCCCcHHHHHHHHHccC-CcEEEEEehHHHHHHHhhchhhcCCccccccccc
Q 021064 7 KAEKKIAYDAKLCQLLEEYT-QILVAAADNVGSNQLQNIRRGLRG-DSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPL 84 (318)
Q Consensus 7 ~~e~K~~~v~el~e~l~~y~-~v~iv~~~~v~s~qlq~IR~~Lr~-~a~~~vgKNtL~r~AL~~~~~~~~~~~l~~L~~~ 84 (318)
++++|+++|++|++.+++|+ .+++++|+|++++|+++||++||+ +++++|+|||||++|++++. ++. .++
T Consensus 2 ~~~~K~~~v~el~~~l~~~~~~v~v~~~~gltv~~~~~LR~~lr~~g~~~~V~KNtL~~~Al~~~~-------~~~-~~~ 73 (173)
T 2j01_J 2 PNKRNVELLATLKENLERAQGSFFLVNYQGLPAKETHALRQALKQNGARLFVAKNTLIRLALKELG-------LPE-LDG 73 (173)
T ss_pred CHHHHHHHHHHHHHHHHHCCCEEEEEEcCCCCHHHHHHHHHHHHHCCcEEEEehhHHHHHHHhcCC-------CCc-ccc
Confidence 38999999999999999999 999999999999999999999997 58999999999999999874 889 999
Q ss_pred ccCceEEEEecCChHHHHHHHHhhcc
Q 021064 85 LQGNVGLIFTKGDLKEVKEEVAKYKV 110 (318)
Q Consensus 85 L~G~~gLiFTn~dp~ev~k~l~~~k~ 110 (318)
|+|++|++|| +||.+++++|.+|..
T Consensus 74 l~G~~a~~fs-~dp~~~ak~l~~f~k 98 (173)
T 2j01_J 74 LQGPSAVVFY-EDPVAAAKTLVQFAK 98 (173)
T ss_pred ccCCEEEEEe-CCHHHHHHHHHHHHH
Confidence 9999999999 999999999988754
No 9
>1zav_A 50S ribosomal protein L10; ribosome structure and function, L10-L12 complex structure, L10E structure, L7/12 ribosomal stalk; 1.90A {Thermotoga maritima} SCOP: d.58.62.1 PDB: 1zaw_A 1zax_A
Probab=99.84 E-value=4.7e-21 Score=169.28 Aligned_cols=97 Identities=16% Similarity=0.266 Sum_probs=91.9
Q ss_pred cHHHHHHHHHHHHHHHhccCeEEEEEeCCCCcHHHHHHHHHccC----CcEEEEEehHHHHHHHhhchhhcCCccccccc
Q 021064 7 KAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRG----DSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLI 82 (318)
Q Consensus 7 ~~e~K~~~v~el~e~l~~y~~v~iv~~~~v~s~qlq~IR~~Lr~----~a~~~vgKNtL~r~AL~~~~~~~~~~~l~~L~ 82 (318)
++++|+++|++|++.+++|+.+++++|+|++++|+++||++||+ +++++|+|||||++|++++. ++.|.
T Consensus 4 ~~~~K~~~v~el~~~l~~~~~v~v~~~~gltv~q~~~LR~~lr~~~~~g~~~~V~KNtL~~~Al~~~~-------~~~L~ 76 (180)
T 1zav_A 4 TRQQKELIVKEMSEIFKKTSLILFADFLGFTVADLTELRSRLREKYGDGARFRVVKNTLLNLALKNAE-------YEGYE 76 (180)
T ss_dssp CHHHHHHHHHHHHHHHTTCSEEEEECCTTCCHHHHHHHHHHHHHHHTTSEEEEEECHHHHHHHHHHTT-------CCSCG
T ss_pred CHHHHHHHHHHHHHHHHhCCEEEEEEeCCCCHHHHHHHHHHHHhcccCCeEEEEehHHHHHHHHccCC-------hhhHH
Confidence 48999999999999999999999999999999999999999996 48999999999999999874 89999
Q ss_pred ccccCceEEEEec-CChHHHHHHHHhhcc
Q 021064 83 PLLQGNVGLIFTK-GDLKEVKEEVAKYKV 110 (318)
Q Consensus 83 ~~L~G~~gLiFTn-~dp~ev~k~l~~~k~ 110 (318)
++|+|++|++||+ +||.+++++|.+|..
T Consensus 77 ~~l~G~~a~~fs~~~dp~~~ak~l~~f~k 105 (180)
T 1zav_A 77 EFLKGPTAVLYVTEGDPVEAVKIIYNFYK 105 (180)
T ss_dssp GGCSSSEEEEEESSSCTHHHHHHHHHHHH
T ss_pred HhCcCCEEEEEecCCCHHHHHHHHHHHHH
Confidence 9999999999999 999999999998754
No 10
>3sgf_H 50S ribosomal protein L10; typeii release factor binding with ribosome, ribosome-antibi complex; 3.20A {Escherichia coli} PDB: 3uos_H 3j12_J* 3j0w_J* 3j0y_J* 3j11_J* 3j0t_J* 3j14_J*
Probab=99.81 E-value=8.8e-22 Score=171.84 Aligned_cols=98 Identities=14% Similarity=0.200 Sum_probs=92.5
Q ss_pred ccHHHHHHHHHHHHHHHhccCeEEEEEeCCCCcHHHHHHHHHccC-CcEEEEEehHHHHHHHhhchhhcCCccccccccc
Q 021064 6 SKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRG-DSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPL 84 (318)
Q Consensus 6 k~~e~K~~~v~el~e~l~~y~~v~iv~~~~v~s~qlq~IR~~Lr~-~a~~~vgKNtL~r~AL~~~~~~~~~~~l~~L~~~ 84 (318)
.++++|+++|++|++.+++|+.++++||+|++++|+++||++||+ +++++|+||||+++|++++. ++.|.++
T Consensus 3 ~~r~~K~~~V~el~~~l~~~~~v~v~~~~gltv~q~~~LR~~lr~~g~~~~V~KNtL~~~Al~~~~-------~~~L~~~ 75 (165)
T 3sgf_H 3 LNLQDKQAIVAEVSEVAKGALSAVVADSRGVTVDKMTELRKAGREAGVYMRVVRNTLLRRAVEGTP-------FECLKDA 75 (165)
T ss_dssp SHHHHHHHHHHHHHHHHSCSCEEECCCTTCCHHHHHHHTTTTTSSCCSSEECCCCTTTTTTTTTCT-------TTCTTCS
T ss_pred CCHHHHHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHHHHHcCcEEEEECcHHHHHHHhcCC-------cchhHHh
Confidence 679999999999999999999999999999999999999999997 58999999999999999864 8999999
Q ss_pred ccCceEEEEecCChHHHHHHHHhhcc
Q 021064 85 LQGNVGLIFTKGDLKEVKEEVAKYKV 110 (318)
Q Consensus 85 L~G~~gLiFTn~dp~ev~k~l~~~k~ 110 (318)
|+|+++++||++||.+++|++.+|..
T Consensus 76 l~G~tai~fs~~dp~~~aK~l~~f~K 101 (165)
T 3sgf_H 76 FVGPTLIAYSMEHPGAAARLFKEFAK 101 (165)
T ss_dssp TTCCSCCCEEEECSSCSHHHHHHHHH
T ss_pred CcCCEEEEEeCCCHHHHHHHHHHHHH
Confidence 99999999999999999999987743
No 11
>3a1y_G Acidic ribosomal protein P0; stalk, helix SPIN, ribonucleoprotein; 2.13A {Pyrococcus horikoshii}
Probab=99.08 E-value=2.2e-10 Score=107.60 Aligned_cols=230 Identities=10% Similarity=0.107 Sum_probs=123.1
Q ss_pred HHHHHHHHHHHhccCeEEEEEeCCCCcHH------------HHHHHHHccCCcEEEEEehHH--HHHHHhhchhhcCC-c
Q 021064 12 IAYDAKLCQLLEEYTQILVAAADNVGSNQ------------LQNIRRGLRGDSVVLMGKNTM--MKRTIRMHAEKTGN-T 76 (318)
Q Consensus 12 ~~~v~el~e~l~~y~~v~iv~~~~v~s~q------------lq~IR~~Lr~~a~~~vgKNtL--~r~AL~~~~~~~~~-~ 76 (318)
.+.+.+||..+.+...-+.+-=..+-..- +..|-..|+|..-+.+.+... +.+.+.+.....+. .
T Consensus 35 ~~ql~~lR~~lr~~g~~~~v~KNtL~~~Al~~~~~~~~~~~~~~L~~~l~G~~al~Ft~~dp~~vak~l~~f~~~~~ar~ 114 (284)
T 3a1y_G 35 AYPLSQMRRLIRENGGLLRVSRNTLIELAIKKAAKELGKPELEKLVEYIDRGAGILVTNMNPFKLYKFLQQNRQPAPAKP 114 (284)
T ss_dssp HHHHHHHHHHHHHTTEEEEECSSSSCCHHHHHHHTTCSCSSTTSSSCCCCTTEEEEEESSCHHHHHHHHHHCCCC-----
T ss_pred HHHHHHHHHHHHhcCcEEEEeHHHHHHHHHhhCccccccccHHHHhhhcCCCEEEEEECCCHHHHHHHHHHhcchhhhhc
Confidence 35677888888877555555433333333 333444577776777775443 33445443211111 0
Q ss_pred c-cccccc-cccCceEEEEecCChHHHHHHHHhhccCccccCCC--CCCceEEECCCCCCCCCCchhhhhhcCcceEEec
Q 021064 77 A-FLNLIP-LLQGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGL--VAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINK 152 (318)
Q Consensus 77 ~-l~~L~~-~L~G~~gLiFTn~dp~ev~k~l~~~k~~~~Ak~G~--iA~~dVvIp~G~t~~~P~~~s~fqkLgIptki~k 152 (318)
| +..-+- .-.|++ ...|.++...|.+...|.-...|. +..+..++.+|.. ++|++...|+.|||...--+
T Consensus 115 Gaia~~dv~ip~g~~-----~~~p~~~~~~l~~LgIptki~~g~I~i~~d~~v~~~G~~-l~~~~a~lL~~L~i~~~~~~ 188 (284)
T 3a1y_G 115 GAVVPKDVVVPAGPT-----PLAPGPIVGQMQALGIPARIEKGKVTIQKDTTVLKAGEV-ITPELANILNALGIQPLEVG 188 (284)
T ss_dssp --------------------------------------------------------------------------CCCCCC
T ss_pred CCccceeEEecCCCC-----CCCCcchHHHHHHCCCCeEEecCeeEeecceEEEecCCC-cCHHHHHHHHHcCCCHHHHH
Confidence 0 000000 113443 456888899999999999999998 5567789999998 99999999999999998777
Q ss_pred ceEEEecCeEEeecCcccChhHHHHHHHhCCCccccccceeeeeccCcccCCCcccCChHHHHHHHHHHHHHHHHHhhhc
Q 021064 153 GTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAI 232 (318)
Q Consensus 153 G~I~I~~d~~v~k~Ge~v~~~qA~LL~~L~I~p~~~~l~l~~~~~~g~~~~~~~L~i~~e~~~~~~~~a~~~a~~ls~~~ 232 (318)
-.| ..+...|...+++.. .|.+.++...+..++.+...++.+.-.+|++.+...+.+|+.++++||+++
T Consensus 189 l~i-----~~~~~~~~~~~~~vl------~i~~e~~~~~~~~a~~~a~~lsl~~~~pt~~s~~~~i~ka~~~~~ala~~~ 257 (284)
T 3a1y_G 189 LDV-----LAVYEDGIVYTPDVL------AIDEQEYIDMLQKAYMHAFNLAVNIAYPTPETIEAIIQKAFLNAKTVAIEA 257 (284)
T ss_dssp CEE-----EEEEETTEEECHHHH------SCCHHHHHHHHHHHHHHHHHHHHHHTCCCTTTHHHHHHHHHHHHHHHHHHT
T ss_pred HHH-----HHHhhccccCCHHHc------cCCHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 777 466778888888654 489999999999999888888888889999999999999999999999999
Q ss_pred CCCCccchhhHHHHHHHHHHhhhhhc
Q 021064 233 SYPTLAAAPHMFVNAYKNVVAVALAT 258 (318)
Q Consensus 233 ~ypt~~s~p~~i~~a~~~a~ala~~~ 258 (318)
+|++++++|.+|++|+.+|+|||...
T Consensus 258 ~~~~~~~~~~~~~ka~~~~~~l~~~~ 283 (284)
T 3a1y_G 258 GYITKETIQDIIGRAFRAMLLLAQQL 283 (284)
T ss_dssp TCCCTTTHHHHHHHHHHHHHHHHTTC
T ss_pred CCCChhhHHHHHHHHHHHHHHHHhhC
Confidence 99999999999999999999998754
No 12
>1vq8_G Acidic ribosomal protein P0 homolog; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: j.84.1.1 PDB: 1k73_I* 1k8a_I* 1k9m_I* 1kc8_I* 1kd1_I* 1kqs_G* 1m1k_I* 1m90_I* 1n8r_I* 1nji_I* 1q7y_I* 1q81_I* 1q82_I* 1q86_I* 1qvf_G 1qvg_G 1s72_G* 1vq4_G* 1vq5_G* 1vq6_G* ...
Probab=99.04 E-value=2.2e-11 Score=117.40 Aligned_cols=153 Identities=16% Similarity=0.096 Sum_probs=0.0
Q ss_pred cCChHHHHHHHHhhccCccccCCC--CCCceEEECCCCCCCCCCchhhhhhcCcceEEecceEEEecCeEEeecCcccCh
Q 021064 95 KGDLKEVKEEVAKYKVGAPARVGL--VAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGS 172 (318)
Q Consensus 95 n~dp~ev~k~l~~~k~~~~Ak~G~--iA~~dVvIp~G~t~~~P~~~s~fqkLgIptki~kG~I~I~~d~~v~k~Ge~v~~ 172 (318)
..+|..+...|.+.+.|+...-|. |..+.+++++|.. ++|++...|+.|||...--+-+| ..+...|...++
T Consensus 132 ~~~P~~~~~~fq~LgIPTkI~kG~I~I~~d~~v~k~G~~-v~~~~A~LL~~LgI~p~~f~l~l-----~~~~d~g~~~~~ 205 (348)
T 1vq8_G 132 GVDPGPFVGELQSVGADARIQEGSIQVLSDSTVLDTGEE-VSQELSNVLNELGIEPKEVGLDL-----RAVFADGVLFEP 205 (348)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCchHHHHHHcCCCEEeccCceEecCceEEeeCCCC-cCHHHHHHHHHcCCCceeeeeee-----EEEEeCCcccCH
Confidence 456888889999999999999998 6777889999999 99999999999999998777777 355566777777
Q ss_pred hHHHHHHHhCCCccccccceeeeeccCcccCCCcccCChHHHHHHHHHHHHHHHHHhhhcCCCCccchhhHHHHHHHHHH
Q 021064 173 SEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVV 252 (318)
Q Consensus 173 ~qA~LL~~L~I~p~~~~l~l~~~~~~g~~~~~~~L~i~~e~~~~~~~~a~~~a~~ls~~~~ypt~~s~p~~i~~a~~~a~ 252 (318)
+. |+|....|.-++...+.+...++.+.-++|.+.+.-.+.+|++++++||++++|++++++|.+|.+|+.+|+
T Consensus 206 ~v------L~i~~e~~~~~~~~~~~~~~~lsl~~~ypt~~s~~~~i~~a~~~~~ala~~~~~~~~~~~~~il~kA~~~~~ 279 (348)
T 1vq8_G 206 EE------LELDIDEYRSDIQAAAGRAFNLSVNADYPTATTAPTMLQSDRGNAKSLALQAAIEDPEVVPDLVSKADAQVR 279 (348)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HH------ccCCHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHhcCcCChhhHHHHHHHHHHHHH
Confidence 54 569999999999999999888999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcC
Q 021064 253 AVALATE 259 (318)
Q Consensus 253 ala~~~~ 259 (318)
|||...+
T Consensus 280 ala~~~~ 286 (348)
T 1vq8_G 280 ALASQID 286 (348)
T ss_dssp -------
T ss_pred HHHHhcC
Confidence 9998875
No 13
>3j21_k Acidic ribosomal protein P0 homolog; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=99.01 E-value=7.4e-11 Score=113.44 Aligned_cols=227 Identities=13% Similarity=0.139 Sum_probs=111.3
Q ss_pred HHHHHHHHHHhccCeEEEEEeCCCCcHH------------HHHHHHHccCCcEEEEEehHHH--HHHHhhchhhcCC-cc
Q 021064 13 AYDAKLCQLLEEYTQILVAAADNVGSNQ------------LQNIRRGLRGDSVVLMGKNTMM--KRTIRMHAEKTGN-TA 77 (318)
Q Consensus 13 ~~v~el~e~l~~y~~v~iv~~~~v~s~q------------lq~IR~~Lr~~a~~~vgKNtL~--r~AL~~~~~~~~~-~~ 77 (318)
..+.+||..+.+....+++.=..|-..- +.+|-..|+|..-+.|.+.... ++.|.+.....+. .|
T Consensus 36 ~ql~~lR~~lr~~g~~~~v~KNtL~r~Al~~~~~~e~~~~l~~L~~~L~G~~~l~Ft~~dp~~v~k~l~~~~~~~~Ar~G 115 (339)
T 3j21_k 36 YPLSQMRRLIRENNGLLRVSRNTLIELAIKKVAQELGKPELEKLINYIEGGAGILVTTMNPFKLYKFLQQNRQPAPAKPG 115 (339)
T ss_dssp THHHHHHHHHHHTTEEEECCHHHHSCHHHHHHHSSCCCSSSSSSSCCCCTTEEEEEESSCHHHHHHHHHHSCCCCCCCTT
T ss_pred HHHHHHHHHHhcCCeEEEEEhHHHHHHHHhcChhhhccccHHHHHHHhcCCeEEEEECCCHHHHHHHHHHcCCcccccCC
Confidence 3567788888876455544222222222 2333445677777778766543 3344433211111 00
Q ss_pred ----cccccccccCceEEEEecCChHHHHHHHHhhccCccccCCC--CCCceEEECCCCCCCCCCchhhhhhcCcceEEe
Q 021064 78 ----FLNLIPLLQGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGL--VAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKIN 151 (318)
Q Consensus 78 ----l~~L~~~L~G~~gLiFTn~dp~ev~k~l~~~k~~~~Ak~G~--iA~~dVvIp~G~t~~~P~~~s~fqkLgIptki~ 151 (318)
.+-..| .|+| ...|..+...|.+.+.|+...-|. |..+.+++++|.. ++|++...|+.|||...--
T Consensus 116 aiAp~dV~Ip--~G~t-----~~~p~~~~~~fq~lgiptki~~G~I~i~~d~~v~k~G~~-v~~~~A~lL~~l~i~p~~~ 187 (339)
T 3j21_k 116 AKVPKDVVIP--AGPT-----SLAPGPIVGQMQAMGIPARIERGKVTIQKDTVVLKAGEE-ITPELANILNALGIQPLEV 187 (339)
T ss_dssp CBCSSCEEEC--CEEC-----SCCSSHHHHHHHHHTCCEEEETTEEEECSCEEEECTTSB-CCHHHHHHHHHHTCCCSCC
T ss_pred CcCCceEEec--CCCC-----CCCCCccHHHHHHcCCCeEeccCeEEEccceEEEecCCC-cCHHHHHHHHHcCCCcEEe
Confidence 111111 4555 668999899999999999999999 7777889999999 9999999999999999888
Q ss_pred cceEEEecCeEEeecCcccChhHHHHHHHhCCCccccccceeeeeccCcccCCCcccCChHHHHHHHHHHHHHHHHHhhh
Q 021064 152 KGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALA 231 (318)
Q Consensus 152 kG~I~I~~d~~v~k~Ge~v~~~qA~LL~~L~I~p~~~~l~l~~~~~~g~~~~~~~L~i~~e~~~~~~~~a~~~a~~ls~~ 231 (318)
+-+| ..+...|...+++ .|+|....|.-.+..++.+...++.+.-++|++.+...+.+|++++++||++
T Consensus 188 ~l~l-----~~~~~~g~i~~~~------~L~i~~e~~~~~~~~a~~~a~~lsl~~~ypT~~svp~~i~~a~k~~lala~~ 256 (339)
T 3j21_k 188 GLDL-----LAVYEDGIIYTPD------VLAIDESEYINMLQKAYMHAFNLAVNIAYPTPQTIEAIIQKAFLNAKAVAVE 256 (339)
T ss_dssp SCEE-----EEEEETTEEECHH------HHCCCHHHHHHHC---------------------------------------
T ss_pred eeeE-----EEEEeCCcEecHH------hCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 8887 5677788888886 4679999999999999999988999999999999999999999999999999
Q ss_pred cCCCCccchhhHHHHHHHHHHhhhhhc
Q 021064 232 ISYPTLAAAPHMFVNAYKNVVAVALAT 258 (318)
Q Consensus 232 ~~ypt~~s~p~~i~~a~~~a~ala~~~ 258 (318)
++|++++|++.+|.+|++++++++...
T Consensus 257 ~~~~~~e~~~~~l~ka~~~~~alaa~~ 283 (339)
T 3j21_k 257 AGYITKETISDIIGRAIRAMLLLAQQL 283 (339)
T ss_dssp ---------------------------
T ss_pred cCCCChhhHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999999988754
No 14
>3u5i_q A0, L10E, 60S acidic ribosomal protein P0; translation, ribosome, ribosomal R ribosomal protein, STM1; 3.00A {Saccharomyces cerevisiae} PDB: 4b6a_q 3izc_s 3izs_s 3j16_G* 3o5h_M 3jyw_8
Probab=98.28 E-value=1.1e-07 Score=90.46 Aligned_cols=215 Identities=13% Similarity=0.079 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHhccCeEEEEE-------eCCCC--cHHHHHHHHHccCCcEEEEEehHHHH--HHHhhchhhcCC-cc--
Q 021064 12 IAYDAKLCQLLEEYTQILVAA-------ADNVG--SNQLQNIRRGLRGDSVVLMGKNTMMK--RTIRMHAEKTGN-TA-- 77 (318)
Q Consensus 12 ~~~v~el~e~l~~y~~v~iv~-------~~~v~--s~qlq~IR~~Lr~~a~~~vgKNtL~r--~AL~~~~~~~~~-~~-- 77 (318)
.+.+.+||..+.+...+++.. +++.. ...+.+|-..|+|..-+.+.+..... +.|.+.....+. .|
T Consensus 35 v~ql~~LR~~lR~~~~~~V~KNTL~r~Al~~~~~~~~~le~L~~~L~G~~gl~Ft~~dp~~v~k~l~~~k~~~pAr~Gai 114 (312)
T 3u5i_q 35 SQQMHEVRKELRGRAVVLMGKNTMVRRAIRGFLSDLPDFEKLLPFVKGNVGFVFTNEPLTEIKNVIVSNRVAAPARAGAV 114 (312)
T ss_dssp HHHHHHHHHHHSSSCEEEECCHHHHHHHHHTTSSSSCGGGGTGGGCCSSEEEEEESSCHHHHHHHHHTSSCCC-------
T ss_pred HHHHHHHHHHHhcCceEEEeehHHHHHHHhhCcccccChHHHHHhccCCEEEEEECCCHHHHHHHHHhccCcccccCCCc
Confidence 356778888888766544321 11211 12455666778887777777655433 334432211111 00
Q ss_pred --cccccccccCceEEEEecCChHHHHHHHHhhccCccccCCC--CCCceEEECCCCCCCCCCchhhhhhcCcceEEecc
Q 021064 78 --FLNLIPLLQGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGL--VAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKG 153 (318)
Q Consensus 78 --l~~L~~~L~G~~gLiFTn~dp~ev~k~l~~~k~~~~Ak~G~--iA~~dVvIp~G~t~~~P~~~s~fqkLgIptki~kG 153 (318)
.+-..+ .|+|+ .+|.. ...|.+.+.|+...-|. |..+.+++++|.. ++|++...|+.|||...--+-
T Consensus 115 Ap~dV~Ip--~G~tg-----~~P~~-~s~fq~Lgiptki~kG~I~I~~d~~v~k~G~~-v~~~~A~lL~~l~i~p~~~~l 185 (312)
T 3u5i_q 115 APEDIWVR--AVNTG-----MEPGK-TSFFQALGVPTKIARGTIEIVSDVKVVDAGNK-VGQSEASLLNLLNISPFTFGL 185 (312)
T ss_dssp ------------------------------------------------------------------------------CC
T ss_pred CCceEEEC--CCCCC-----CCCcc-hHHHHHcCCCeEeeCCEEEEccceEEEeCCCC-cCHHHHHHHHHcCcCcEEEEE
Confidence 111122 57775 46665 67799999999999999 5677789999999 999999999999999998888
Q ss_pred eEEEecCeEEeecCcccChhHHHHHHHhCCCccccccceeeeeccCcccCCCcccCChHHHHHHHHHHHHHHHHHhhhcC
Q 021064 154 TVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAIS 233 (318)
Q Consensus 154 ~I~I~~d~~v~k~Ge~v~~~qA~LL~~L~I~p~~~~l~l~~~~~~g~~~~~~~L~i~~e~~~~~~~~a~~~a~~ls~~~~ 233 (318)
+| ..+...|...+++. |+|...+|.-++...+.+...++.++-++|.+.+.-.+.+|++++++||++++
T Consensus 186 ~l-----~~~~d~g~i~~~~~------L~i~~e~~~~~~~~~~~~~~~lsl~~~ypt~~s~~~~i~~a~k~~~a~a~~~~ 254 (312)
T 3u5i_q 186 TV-----VQVYDNGQVFPXXX------XXXXXXXXXXXXXXXXXXXXSISLAIGYPTLPSVGHTLINNYKDLLAVAIAAS 254 (312)
T ss_dssp EE-----EEEEESSCCCCSTT------TSCCSSTTTHHHHHHHTTCC---------------------------------
T ss_pred EE-----EEEecCCceecccc------ccccccccccccccchhhHhhhHHhhCCCcHHHHHHHHHHHHHHHHHHHHhhc
Confidence 88 56777888888874 67999999999999999988899999999999999999999999999999999
Q ss_pred CCCccc--hhhHHHH
Q 021064 234 YPTLAA--APHMFVN 246 (318)
Q Consensus 234 ypt~~s--~p~~i~~ 246 (318)
|..+++ +...+.+
T Consensus 255 ~~~~~~~~ik~~la~ 269 (312)
T 3u5i_q 255 YHYPEIEDLVDRIEN 269 (312)
T ss_dssp ---------------
T ss_pred ccCccchhHHHHHhC
Confidence 977754 5555544
No 15
>3iz5_s 60S acidic ribosomal protein P0 (L10P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_s
Probab=98.10 E-value=6.6e-07 Score=85.30 Aligned_cols=214 Identities=11% Similarity=0.080 Sum_probs=149.0
Q ss_pred HHHHHHHHHHhccCeEEEEEeCCCCcHHHH------------HHHHHccCCcEEEEEehHHH--HHHHhhchhhcCC-cc
Q 021064 13 AYDAKLCQLLEEYTQILVAAADNVGSNQLQ------------NIRRGLRGDSVVLMGKNTMM--KRTIRMHAEKTGN-TA 77 (318)
Q Consensus 13 ~~v~el~e~l~~y~~v~iv~~~~v~s~qlq------------~IR~~Lr~~a~~~vgKNtL~--r~AL~~~~~~~~~-~~ 77 (318)
+.+.+||..+.+... +++.=..|-..-+. +|-..|+|+.-+.+.+.... ++.|.+.....+. .|
T Consensus 39 ~ql~~LR~~lR~~~~-~~V~KNTL~r~Al~~~~e~~~~~~le~L~~~L~G~~gl~FT~~dp~~v~k~l~~~k~~~pAr~G 117 (319)
T 3iz5_s 39 NQLQEIRKGLRGDSI-VLMGKNTLIRRCIKVHADNTGNKEFLELMPLLVGNVGLIFTKGDLKEVREEVAKYKVGAPARVG 117 (319)
T ss_dssp HHHHHHHHHHHHHSC-EECCSTTTCCHHHHHHHSSSCCSSSSSSSCCCCTTEEEEEESSCHHHHHHHHHHSCEEECCCTT
T ss_pred HHHHHHHHHHhCCcE-EEEEhHHHHHHHHhhchhhhccccHHHHHHHhcCCeEEEEECCChHHHHHHHHHccccccccCC
Confidence 556778888875444 33332233232233 33345677777777766543 3334433211111 01
Q ss_pred ----cccccccccCceEEEEecCChHHHHHHHHhhccCccccCCC--CCCceEEECCCCCCCCCCchhhhhhcCcceEEe
Q 021064 78 ----FLNLIPLLQGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGL--VAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKIN 151 (318)
Q Consensus 78 ----l~~L~~~L~G~~gLiFTn~dp~ev~k~l~~~k~~~~Ak~G~--iA~~dVvIp~G~t~~~P~~~s~fqkLgIptki~ 151 (318)
.+-..+ .|+|+ .+|.. ...|.+.+.|+...-|. |..+.+++++|.. ++|++...|+.|||...--
T Consensus 118 aiAp~dV~Vp--aG~tg-----~~P~~-~s~fq~LgiptkI~kG~I~I~~d~~v~k~G~~-v~~~~A~lL~~l~i~p~~f 188 (319)
T 3iz5_s 118 LVAPVDVVVP--PGNTG-----LDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIKKGDK-VGSSESALLAKLGIRPFSY 188 (319)
T ss_dssp CBCSSCEEEC--CEECC-----CCSSC-THHHHHHTCCEEEETTEEEECSCEEEECTTSB-CCHHHHHHHHHHTCCCEEE
T ss_pred CcCCceEEEC--CCCCC-----CCCcc-hHHHHHcCCceEEecCeEEEcCceEEEecCCC-cCHHHHHHHHHhCCCceEE
Confidence 111122 46664 56666 37899999999999999 6677789999999 9999999999999999998
Q ss_pred cceEEEecCeEEeecCcccChhHHHHHHHhCCCccccccceeeeeccCcccCCCcccCChHHHHHHHHHHHHHHHHHhhh
Q 021064 152 KGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALA 231 (318)
Q Consensus 152 kG~I~I~~d~~v~k~Ge~v~~~qA~LL~~L~I~p~~~~l~l~~~~~~g~~~~~~~L~i~~e~~~~~~~~a~~~a~~ls~~ 231 (318)
+-+| ..+...|...+++. |+|...+|.-++...+.+...++.++-++|.+.+.-.+.+|++++++||++
T Consensus 189 ~l~l-----~~~~d~g~i~~~~v------L~i~~e~~~~~~~~~~~~~~~lsl~~~ypt~~s~~~~i~~a~k~~~ala~~ 257 (319)
T 3iz5_s 189 GLVI-----TNVYDSGSVFSPEV------LDLTEDDLMEKFASGVSMVASVSLAISYPTIAAAPHMFLNGYKNVLAVAVE 257 (319)
T ss_dssp SCEE-----EEEEETTEEECHHH------HSCCCHHHHHHHHHHHHHHHHHHHHHTCCSTTTHHHHHHHHHHHHHHHHSS
T ss_pred Eeee-----eEEEeCCceeCHHH------cCCCHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHh
Confidence 8888 56777888888874 679999999999999988888888899999999999999999999999999
Q ss_pred cCCCCc--cchhhHHHHH
Q 021064 232 ISYPTL--AAAPHMFVNA 247 (318)
Q Consensus 232 ~~ypt~--~s~p~~i~~a 247 (318)
++|.++ +.+...|.+-
T Consensus 258 ~~~~~~~~e~ik~~l~~p 275 (319)
T 3iz5_s 258 TEYSYPHADKIKEYLKDP 275 (319)
T ss_dssp SSCCC-------------
T ss_pred cCcccCCchhHHHHHhhh
Confidence 999888 7888888763
No 16
>2zkr_g 60S acidic ribosomal protein P0; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=97.77 E-value=4.5e-06 Score=79.51 Aligned_cols=188 Identities=12% Similarity=0.141 Sum_probs=6.5
Q ss_pred HHHHHHHHccCCcEEEEEehHHHH--HHHhhchhhcCC-cc----cccccccccCceEEEEecCChHHHHHHHHhhccCc
Q 021064 40 QLQNIRRGLRGDSVVLMGKNTMMK--RTIRMHAEKTGN-TA----FLNLIPLLQGNVGLIFTKGDLKEVKEEVAKYKVGA 112 (318)
Q Consensus 40 qlq~IR~~Lr~~a~~~vgKNtL~r--~AL~~~~~~~~~-~~----l~~L~~~L~G~~gLiFTn~dp~ev~k~l~~~k~~~ 112 (318)
.+..|-..|+|..-+.+.+..... +.+.+.....+. .| .+-..+ .|+|+ .+|.. ...|.+...|+
T Consensus 74 ~~e~L~~~L~G~~al~Ft~~Dp~~vaK~l~~f~~~~pAr~GaiAp~dV~Ip--~G~t~-----~~p~~-~~~fq~LgipT 145 (317)
T 2zkr_g 74 ALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCEVTVP--AQNTG-----LGPEK-TSFFQALGITT 145 (317)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred chhhhhhccCCCEEEEEECCCHHHHHHHHHHhCccchhccCCcCCceEEeC--CCCCC-----CCCcc-hHHHHHcCCCe
Confidence 566677777776666555443322 222221111110 00 112222 56654 45666 57899999999
Q ss_pred cccCCC--CCCceEEECCCCCCCCCCchhhhhhcCcceEEecceEEEecCeEEeecCcccChhHHHHHHHhCCCcccccc
Q 021064 113 PARVGL--VAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGL 190 (318)
Q Consensus 113 ~Ak~G~--iA~~dVvIp~G~t~~~P~~~s~fqkLgIptki~kG~I~I~~d~~v~k~Ge~v~~~qA~LL~~L~I~p~~~~l 190 (318)
...-|. |..+.+++++|.. ++|++...|+.|||...--+-+| ..+...|...+++. |+|...+|.-
T Consensus 146 kI~kG~I~i~~d~~v~k~G~~-v~~~~A~lL~~l~i~p~~~~l~l-----~~~~d~g~~~~~~~------L~i~~e~~~~ 213 (317)
T 2zkr_g 146 KISRGTIEILSDVQLIKTGDK-VGASEATLLNMLNISPFSFGLVI-----QQVFDNGSIYNPEV------LDITEETLHS 213 (317)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EeeCCeEEEecceEEecCCCC-cCHHHHHHHHHcCCCceeeeeee-----eEEEecCcccchHh------ccCCHHHHHH
Confidence 999998 7777889999999 99999999999999998777777 45666777778765 5699999999
Q ss_pred ceeeeeccCcccCCCcccCChHHHHHHHHHHHHHHHHHhhhcCC--CCccchhhHHHHH
Q 021064 191 VVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISY--PTLAAAPHMFVNA 247 (318)
Q Consensus 191 ~l~~~~~~g~~~~~~~L~i~~e~~~~~~~~a~~~a~~ls~~~~y--pt~~s~p~~i~~a 247 (318)
++...+.+-..++.+.-++|.+.+.-.+.+|++++++||++++| +..+.+...|.+-
T Consensus 214 ~~~~~~~~~~~lsl~~~~pt~~s~~~~i~~a~~~~~ala~~~~~~~~ea~~vk~~l~~~ 272 (317)
T 2zkr_g 214 RFLEGVRNVASVCLQIGYPTVASVPHSIINGYKRVLALSVETDYTFPLAEKVKAFLADP 272 (317)
T ss_dssp -----------------------------------------------CHHHHHTTTHHH
T ss_pred HHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhhcccChhhhhhHHHHHhcc
Confidence 99999999888999999999999999999999999999999997 4445555666543
No 17
>3jsy_A Acidic ribosomal protein P0 homolog; ribonucleoprotein; 1.60A {Methanocaldococcus jannaschii}
Probab=93.55 E-value=0.093 Score=46.88 Aligned_cols=151 Identities=11% Similarity=0.109 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHhccCeEEEEEeCCC-----Cc-------HHHHHHHHHccCCcEEEEEehHHHH--HHHhhchhhcCC-c
Q 021064 12 IAYDAKLCQLLEEYTQILVAAADNV-----GS-------NQLQNIRRGLRGDSVVLMGKNTMMK--RTIRMHAEKTGN-T 76 (318)
Q Consensus 12 ~~~v~el~e~l~~y~~v~iv~~~~v-----~s-------~qlq~IR~~Lr~~a~~~vgKNtL~r--~AL~~~~~~~~~-~ 76 (318)
.+.+.+||..+.+.. .+++.=..+ .. ..+.+|-..|+|..-+.+.+..... +.|.+.....+. .
T Consensus 32 ~~ql~~lR~~lr~~~-~~~v~KNtL~r~Al~~~~~~e~~~~~~~L~~~l~G~~~l~Ft~~dp~~v~k~l~~~~~~~~Ar~ 110 (213)
T 3jsy_A 32 APQLQEIRDKIRDKV-KLRMSRNTLIIRALKEAAEELNNPKLAELANYVERGAAILVTDMNPFKLYKLLEENKSPAPVRG 110 (213)
T ss_dssp HHHHHHHHHHHTTTE-EEEECCHHHHHHHHHHHHHHTTCGGGGGGGGGCCSSEEEEEESSCHHHHHHHHHHSCEEECCCT
T ss_pred HHHHHHHHHHHhCCC-EEEEEeHHHHHHHHhhchhhhcccchhHHHHhCcCCeEEEEeCCCHHHHHHHHHHcCCcccccC
Confidence 356778888887653 333311111 00 1345556667887777787665533 334433211111 1
Q ss_pred c----cccccccccCceEEEEecCChHHHHHHHHhhccCccccCCC--CCCceEEECCCCCCCCCCchhhhhhcCcceEE
Q 021064 77 A----FLNLIPLLQGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGL--VAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKI 150 (318)
Q Consensus 77 ~----l~~L~~~L~G~~gLiFTn~dp~ev~k~l~~~k~~~~Ak~G~--iA~~dVvIp~G~t~~~P~~~s~fqkLgIptki 150 (318)
| .+-..+ .|+++ ..|..+...|.+.+.|+...-|. |..+.+++++|.. ++|++...|+.|||...-
T Consensus 111 GaiAp~dV~ip--~G~t~-----~~p~~~~~~~q~lgiptki~~G~I~i~~d~~v~k~G~~-v~~~~A~lL~~l~i~p~~ 182 (213)
T 3jsy_A 111 GQIAPCDIKVE--KGSTG-----MPPGPFLGELKSVGIPAAIEKGKIAIKEDKVVVKKGEV-VSPKLAAVLDRLGIKPIK 182 (213)
T ss_dssp TCBCSSCEEEC--SEEEE-----ECSSTHHHHHHHTTCCEEEETTEEEECSCEEEECTTSB-CCHHHHHHHHHTTCCCEE
T ss_pred CCcCCceEEEC--CCCCC-----CCCCccHHHHHHcCCceEeecCeEEEccceEEEecCCC-cCHHHHHHHHHcCCCcEE
Confidence 1 111122 57775 47888899999999999999999 7777889999999 999999999999999998
Q ss_pred ecceEEEecCeEEeecCcccChhHHH
Q 021064 151 NKGTVEIITPVELIRKGDKVGSSEAA 176 (318)
Q Consensus 151 ~kG~I~I~~d~~v~k~Ge~v~~~qA~ 176 (318)
-+-+| ..+...|...+|+...
T Consensus 183 ~~l~l-----~~~~~~g~i~~~~~L~ 203 (213)
T 3jsy_A 183 VGLNI-----LAVYEDGIIYTPDVLK 203 (213)
T ss_dssp ESCEE-----EEEEETTEEECHHHHH
T ss_pred EEEEE-----EEEEeCCceeCHHHcc
Confidence 88888 5667778888887654
No 18
>1dl0_A J-atracotoxin-HV1C; neurotoxin, insecticidal, cystine knot, vicinal disulfide; NMR {Synthetic} SCOP: g.3.6.2
Probab=48.74 E-value=4.5 Score=25.59 Aligned_cols=11 Identities=64% Similarity=1.869 Sum_probs=8.1
Q ss_pred CcceeeecCCC
Q 021064 304 PKQVCCCCCPG 314 (318)
Q Consensus 304 ~~~~~~~~~~~ 314 (318)
|-..||-||||
T Consensus 9 pcaaccpccpg 19 (37)
T 1dl0_A 9 PCAACCPCCPG 19 (37)
T ss_dssp BCCSSCCCCTT
T ss_pred ccccccCCCCC
Confidence 45568888887
No 19
>2eo2_A Adult MALE hypothalamus cDNA, riken FULL-length enriched library, clone:A230045M11...; FTHFSDC1, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=36.02 E-value=16 Score=26.90 Aligned_cols=44 Identities=23% Similarity=0.276 Sum_probs=34.8
Q ss_pred CCCCCCCCchhhhhhcCcceEEecceEEEecCeEEeecCcccChhHHHHHHHhCCCcccc
Q 021064 129 GNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSY 188 (318)
Q Consensus 129 G~t~~~P~~~s~fqkLgIptki~kG~I~I~~d~~v~k~Ge~v~~~qA~LL~~L~I~p~~~ 188 (318)
|--.|+|.+...|++|||.-. .=+.+|+|+.+-.-.|+|+|.+.
T Consensus 25 G~R~Fs~iql~RL~kLGI~kt----------------dP~~LT~eEi~~FaRLdIDP~TI 68 (71)
T 2eo2_A 25 GVREFSEIQLSRLKKLGIHKT----------------DPSTLTEEEVRKFARLNIDPATI 68 (71)
T ss_dssp SSCCCCHHHHHHHHHHTCCCC----------------STTTCCHHHHHHHHHTCCCSTTC
T ss_pred CeeecCHHHHHHHHHcCCCCC----------------CcccCCHHHHhhceecccCccce
Confidence 445589999999999997411 12668999999999999999875
No 20
>1d7q_A Translation initiation factor 1A; OB-fold, beta-barrel, RNA-binding protein, gene regulation; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=35.32 E-value=13 Score=31.19 Aligned_cols=51 Identities=25% Similarity=0.277 Sum_probs=35.1
Q ss_pred cceEEecceEEE-ecCeEEe-------ecCcc---cChhHHHHHHHhCCCccccccceeeeec
Q 021064 146 IPTKINKGTVEI-ITPVELI-------RKGDK---VGSSEAALLAKLGIRPFSYGLVVQSVYE 197 (318)
Q Consensus 146 Iptki~kG~I~I-~~d~~v~-------k~Ge~---v~~~qA~LL~~L~I~p~~~~l~l~~~~~ 197 (318)
||.|+.+ .||| ..|++++ .+|+. .+++|++.|++.|.=|.+|...-...++
T Consensus 60 I~GKmRk-~IwI~~GD~VlVe~~~yd~~KG~Ii~r~~~devk~L~k~g~wP~~f~~~~~~~~~ 121 (143)
T 1d7q_A 60 IRGKLRK-KVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDTFG 121 (143)
T ss_dssp CCSGGGG-SCCCCTTCEEEEECSSSSSSCCEEEEEECTTTHHHHHHHTSSCTTCCCCCCCSSS
T ss_pred eccccee-eEEecCCCEEEEeeccCCCCeEEEEEEeCHHHHHHHHHcCCCChHHhhCcccccc
Confidence 4444444 5555 2344444 45665 5899999999999999999887666554
No 21
>1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets, chaperone; 2.07A {Saccharomyces cerevisiae}
Probab=28.66 E-value=91 Score=24.54 Aligned_cols=59 Identities=14% Similarity=0.182 Sum_probs=38.5
Q ss_pred ceEEECCCCCCCCCCchhhhhhcCcceEE--ecceEEEecCeEEeecCc-ccChhHHHHHHHhCC
Q 021064 122 IDVVVPPGNTGLDPSQTSFFQVLNIPTKI--NKGTVEIITPVELIRKGD-KVGSSEAALLAKLGI 183 (318)
Q Consensus 122 ~dVvIp~G~t~~~P~~~s~fqkLgIptki--~kG~I~I~~d~~v~k~Ge-~v~~~qA~LL~~L~I 183 (318)
..|.||+|.. ..|+..-.++-.|+|..= .+|.+.|.= .|.-+-. -++++|..+|+.|-=
T Consensus 36 ~~v~ip~g~v-~~~G~~~rl~G~Gmp~~~~~~~GDL~V~~--~V~~P~~~~ls~~q~~~l~~l~~ 97 (121)
T 1xao_A 36 LKVGIVPGEV-IAPGMRKVIEGKGMPIPKYGGYGNLIIKF--TIKFPENHFTSEENLKKLEEILP 97 (121)
T ss_dssp EEEEECTTSC-CCTTCEEEETTCSCC------CCCEEEEE--EEECCCTTCSCHHHHHHHHHHSC
T ss_pred EEEEeCCCCe-eCCCcEEEECCCCCCCCCCCCCCCEEEEE--EEECCCCCCCCHHHHHHHHHHcc
Confidence 3688888854 566666667778988532 468887763 3333322 299999999998853
No 22
>3hg9_A PILM; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, P protein, unknown function; 2.40A {Pseudomonas aeruginosa}
Probab=27.03 E-value=43 Score=27.43 Aligned_cols=69 Identities=17% Similarity=0.231 Sum_probs=44.7
Q ss_pred cccccccCceEEEEec-CChHHHHHHHHhhccCccccCCCCCCceEEECCC-CCCCCCCchhhhhhcCcceEEecceEEE
Q 021064 80 NLIPLLQGNVGLIFTK-GDLKEVKEEVAKYKVGAPARVGLVAPIDVVVPPG-NTGLDPSQTSFFQVLNIPTKINKGTVEI 157 (318)
Q Consensus 80 ~L~~~L~G~~gLiFTn-~dp~ev~k~l~~~k~~~~Ak~G~iA~~dVvIp~G-~t~~~P~~~s~fqkLgIptki~kG~I~I 157 (318)
.+..++.+.++++|.+ ..| .+...|.+..... -.|.+..-.++-|.| ++++ -+|..|-+|.|
T Consensus 56 ~i~~~I~~Gr~yV~~~~~~p-gL~aaL~~~t~~S--l~G~~~~G~Lv~p~g~~~~i-----------~lPa~IP~Gsi-- 119 (131)
T 3hg9_A 56 RLQGYIAAGTSYAFIASPPA-GLAAAVDTGTESD--LVGVRRNGQLVTRRLGATAI-----------ALPAPIPEGAV-- 119 (131)
T ss_dssp TEEEEESSSCEEEEESSCCT-THHHHHHHHCCCE--EEEEESSSSEEETTTEEECC-----------CCCTTSCTTCE--
T ss_pred CeeEEEECCEEEEEecCCCc-hHHHHHHHhcCcc--eeEEeeCCEEECCCCCCccC-----------cCCCcCCCCCE--
Confidence 4566788999999985 556 4444555544333 566665555666776 3433 36777888988
Q ss_pred ecCeEEeecCc
Q 021064 158 ITPVELIRKGD 168 (318)
Q Consensus 158 ~~d~~v~k~Ge 168 (318)
+.+|+|.
T Consensus 120 ----V~~~~~~ 126 (131)
T 3hg9_A 120 ----VAVKEGH 126 (131)
T ss_dssp ----EEEECCC
T ss_pred ----EEEeccc
Confidence 6666664
No 23
>3i38_A Putative chaperone DNAJ; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp}
Probab=26.54 E-value=45 Score=25.95 Aligned_cols=55 Identities=20% Similarity=0.289 Sum_probs=36.9
Q ss_pred ceEEECCCCCCCCCCchhhhhhcCcceEEecceEEEecCeEEeecCcccChhHHHHHHHhC
Q 021064 122 IDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLG 182 (318)
Q Consensus 122 ~dVvIp~G~t~~~P~~~s~fqkLgIptki~kG~I~I~~d~~v~k~Ge~v~~~qA~LL~~L~ 182 (318)
.+|.||+| ..|+..-.++--|+|..=.+|.+.|.=++ .-+ +.+|++|..+|+.|-
T Consensus 40 ~~v~ip~g---~~~G~~~rl~G~G~p~~~~~GDL~v~~~V--~~P-~~Ls~~q~~~l~~l~ 94 (109)
T 3i38_A 40 ILLTVPPG---SQAGQRLRIKGKGLVSKTHTGDLFAVIKI--VMP-TKPDEKARELWQQLA 94 (109)
T ss_dssp EEEEECTT---CCTTCEEEETTCSCBCSSCBCCEEEEEEE--CCC-SSCCHHHHHHHHHHH
T ss_pred EEEeeCCC---cCcCeEEEECCccCCCCCCCcCEEEEEEE--ECC-CCCCHHHHHHHHHHH
Confidence 57899988 45666555677788863246776555322 222 459999999998763
No 24
>2dgy_A MGC11102 protein; EIF-1A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.74 E-value=25 Score=28.00 Aligned_cols=43 Identities=21% Similarity=0.332 Sum_probs=27.3
Q ss_pred cceEEecceEEE-ecCeEEee--------cCcc---cChhHHHHHHHhCCCccccc
Q 021064 146 IPTKINKGTVEI-ITPVELIR--------KGDK---VGSSEAALLAKLGIRPFSYG 189 (318)
Q Consensus 146 Iptki~kG~I~I-~~d~~v~k--------~Ge~---v~~~qA~LL~~L~I~p~~~~ 189 (318)
||.|+.+ .|+| ..|++++. +|+. .+++|++-|++-|.=|.+|.
T Consensus 44 i~GK~Rk-~IwI~~GD~VlVe~~~yd~~~kg~Iv~r~~~~qvk~L~k~g~wP~~F~ 98 (111)
T 2dgy_A 44 MPSKYRK-NIWIKRGDFLIVDPIEEGEKVKAEISFVLCKDHVRSLQKEGFWPEAFS 98 (111)
T ss_dssp CCTTCCS-CCCCCSSCEEEEEECSSCSSCCEEEEEECCHHHHHHHHHHTCSCHHHH
T ss_pred echhhcc-cEEEcCCCEEEEEecccCCcceEEEEEEeCHHHHHHHHHcCCCChHHh
Confidence 4555554 5555 33444442 3333 57999999999998887763
No 25
>3gdw_A Sigma-54 interaction domain protein; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; HET: MSE; 2.00A {Enterococcus faecalis}
Probab=20.58 E-value=1.1e+02 Score=24.70 Aligned_cols=51 Identities=8% Similarity=-0.074 Sum_probs=38.1
Q ss_pred HHHHHHHHHHhc------cCeEEEEEeCCCCcHHHHHHHHHccCCcEEEEEehHHHHH
Q 021064 13 AYDAKLCQLLEE------YTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKR 64 (318)
Q Consensus 13 ~~v~el~e~l~~------y~~v~iv~~~~v~s~qlq~IR~~Lr~~a~~~vgKNtL~r~ 64 (318)
++.+++++.+++ ...++++|+ |-+.+.-..+..+.+.+.++.-|=|+-|-.
T Consensus 46 ~~~~~i~~~i~~~~~d~g~GVLiL~Dm-GSp~n~a~~l~~~~~~~v~vI~gvnlpmll 102 (139)
T 3gdw_A 46 TMYEQLRNQVITQKESLNNGILLLTDM-GSLNSFGNMLFEETGIRTKAITMTSTMIVL 102 (139)
T ss_dssp HHHHHHHHHHHTSTGGGTTCEEEEECS-GGGGGHHHHHHHHHCCCEEEECSCCHHHHH
T ss_pred HHHHHHHHHHHhhcCCCCCCEEEEEeC-CCHHHHHHHHHHhhCCCEEEEeCCCHHHHH
Confidence 455666666654 348999999 888888888888776667777788887654
Done!