Query 021065
Match_columns 318
No_of_seqs 191 out of 772
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 07:20:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021065.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021065hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00338 BRLZ basic region l 99.4 6.2E-12 1.3E-16 94.8 9.6 61 232-292 3-63 (65)
2 PF00170 bZIP_1: bZIP transcri 99.3 8.8E-12 1.9E-16 93.9 9.2 61 232-292 3-63 (64)
3 KOG4005 Transcription factor X 99.3 2.5E-11 5.3E-16 113.5 11.9 81 231-311 66-146 (292)
4 KOG4343 bZIP transcription fac 99.3 1.1E-11 2.4E-16 125.9 8.0 70 227-296 274-343 (655)
5 KOG0709 CREB/ATF family transc 99.0 2.9E-10 6.2E-15 114.2 6.9 73 230-309 247-319 (472)
6 PF07716 bZIP_2: Basic region 99.0 1.8E-09 3.9E-14 79.1 8.8 51 232-283 3-53 (54)
7 KOG3584 cAMP response element 99.0 6.6E-10 1.4E-14 106.4 7.1 60 228-287 285-344 (348)
8 PF03131 bZIP_Maf: bZIP Maf tr 98.1 4.9E-08 1.1E-12 78.8 -6.2 58 231-288 27-84 (92)
9 KOG0837 Transcriptional activa 98.0 1.9E-05 4.2E-10 75.1 8.8 52 233-284 205-256 (279)
10 KOG4571 Activating transcripti 97.5 0.0014 3.1E-08 63.4 12.5 65 232-303 224-289 (294)
11 KOG4196 bZIP transcription fac 97.3 0.0024 5.1E-08 55.5 9.9 66 232-311 51-116 (135)
12 PF06005 DUF904: Protein of un 96.9 0.0091 2E-07 46.9 9.2 63 255-317 4-66 (72)
13 KOG3119 Basic region leucine z 96.8 0.0054 1.2E-07 58.6 8.6 49 238-286 198-246 (269)
14 KOG3863 bZIP transcription fac 96.4 0.0068 1.5E-07 63.8 6.5 65 235-306 491-555 (604)
15 TIGR02449 conserved hypothetic 96.0 0.08 1.7E-06 41.1 9.2 53 257-309 2-54 (65)
16 PF06156 DUF972: Protein of un 96.0 0.051 1.1E-06 45.6 8.5 53 259-311 5-57 (107)
17 PF07888 CALCOCO1: Calcium bin 95.8 0.16 3.4E-06 53.4 13.0 84 234-317 150-233 (546)
18 TIGR02894 DNA_bind_RsfA transc 95.7 0.085 1.8E-06 47.4 9.4 60 256-315 88-150 (161)
19 TIGR02449 conserved hypothetic 95.6 0.12 2.5E-06 40.2 8.7 57 255-311 7-63 (65)
20 PF02183 HALZ: Homeobox associ 95.6 0.038 8.1E-07 39.8 5.6 42 266-307 2-43 (45)
21 COG3074 Uncharacterized protei 95.4 0.12 2.6E-06 40.9 8.2 54 256-309 19-72 (79)
22 PF07989 Microtub_assoc: Micro 95.4 0.14 3.1E-06 40.4 8.7 59 257-315 2-68 (75)
23 PRK13169 DNA replication intia 95.4 0.11 2.4E-06 43.9 8.5 50 260-309 6-55 (110)
24 PRK10884 SH3 domain-containing 95.4 0.18 3.9E-06 46.7 10.6 17 287-303 150-166 (206)
25 PF06005 DUF904: Protein of un 95.3 0.22 4.7E-06 39.2 9.4 55 256-310 12-66 (72)
26 PF06156 DUF972: Protein of un 95.2 0.11 2.5E-06 43.5 7.9 50 255-304 8-57 (107)
27 PRK13169 DNA replication intia 95.0 0.13 2.8E-06 43.6 7.9 50 255-304 8-57 (110)
28 PF14197 Cep57_CLD_2: Centroso 95.0 0.27 5.9E-06 38.3 9.1 56 254-309 11-66 (69)
29 COG4467 Regulator of replicati 94.6 0.14 2.9E-06 43.6 6.9 49 260-308 6-54 (114)
30 PRK10884 SH3 domain-containing 94.6 0.74 1.6E-05 42.7 12.3 37 274-310 123-159 (206)
31 PRK11637 AmiB activator; Provi 94.5 0.75 1.6E-05 46.1 13.2 65 251-315 64-128 (428)
32 PRK15422 septal ring assembly 94.5 0.39 8.4E-06 38.7 8.9 48 261-308 24-71 (79)
33 PRK13729 conjugal transfer pil 94.3 0.11 2.4E-06 53.7 6.9 51 255-305 76-126 (475)
34 PF11559 ADIP: Afadin- and alp 94.3 0.66 1.4E-05 40.0 10.7 78 234-311 45-122 (151)
35 PF11559 ADIP: Afadin- and alp 94.0 1.9 4E-05 37.2 13.0 82 235-316 39-120 (151)
36 PF08614 ATG16: Autophagy prot 94.0 0.38 8.2E-06 43.5 9.1 72 231-302 113-184 (194)
37 PRK15422 septal ring assembly 93.8 0.52 1.1E-05 38.0 8.3 63 256-318 5-74 (79)
38 PF04899 MbeD_MobD: MbeD/MobD 93.4 1.2 2.7E-05 34.9 9.7 60 258-317 10-69 (70)
39 PF08614 ATG16: Autophagy prot 93.2 2.1 4.6E-05 38.6 12.5 60 256-315 110-169 (194)
40 PRK11637 AmiB activator; Provi 93.1 1.4 3.1E-05 44.1 12.2 61 248-308 68-128 (428)
41 PF04156 IncA: IncA protein; 92.9 3.6 7.9E-05 36.4 13.3 73 244-316 119-191 (191)
42 PF11932 DUF3450: Protein of u 92.5 1.6 3.4E-05 40.9 10.9 42 254-295 55-96 (251)
43 COG3883 Uncharacterized protei 92.5 1.1 2.4E-05 43.3 10.0 64 251-314 34-97 (265)
44 PF02183 HALZ: Homeobox associ 92.4 0.55 1.2E-05 33.8 6.0 42 273-314 2-43 (45)
45 COG1579 Zn-ribbon protein, pos 92.3 3.1 6.7E-05 39.7 12.6 82 233-314 30-120 (239)
46 PRK00888 ftsB cell division pr 92.2 0.49 1.1E-05 39.4 6.4 42 274-315 32-73 (105)
47 TIGR03752 conj_TIGR03752 integ 92.1 0.71 1.5E-05 47.8 8.7 59 256-314 74-133 (472)
48 PF06785 UPF0242: Uncharacteri 91.9 0.86 1.9E-05 45.6 8.7 63 249-311 121-183 (401)
49 PF07412 Geminin: Geminin; In 91.9 0.76 1.6E-05 42.8 7.9 47 268-318 124-170 (200)
50 KOG4005 Transcription factor X 91.8 1.8 3.9E-05 41.6 10.4 76 231-309 70-151 (292)
51 PF05266 DUF724: Protein of un 91.8 4.2 9E-05 37.3 12.5 84 232-315 87-184 (190)
52 PF07106 TBPIP: Tat binding pr 91.6 1 2.2E-05 39.6 8.1 49 255-303 86-136 (169)
53 PF13747 DUF4164: Domain of un 91.6 5.8 0.00013 32.2 11.8 75 232-306 9-83 (89)
54 PF07106 TBPIP: Tat binding pr 91.4 1.4 3E-05 38.8 8.7 56 256-311 80-137 (169)
55 PF12329 TMF_DNA_bd: TATA elem 91.3 3.1 6.6E-05 32.7 9.6 63 253-315 10-72 (74)
56 PF10473 CENP-F_leu_zip: Leuci 91.2 7.1 0.00015 34.4 12.8 66 239-311 36-101 (140)
57 PF12325 TMF_TATA_bd: TATA ele 91.0 2.4 5.3E-05 36.3 9.5 33 274-306 73-112 (120)
58 COG3074 Uncharacterized protei 91.0 2.5 5.3E-05 33.7 8.7 62 257-318 6-74 (79)
59 PF09304 Cortex-I_coil: Cortex 90.9 3.7 8E-05 34.9 10.3 76 234-309 16-91 (107)
60 PRK09039 hypothetical protein; 90.8 3.1 6.6E-05 41.2 11.4 48 262-309 137-184 (343)
61 COG4026 Uncharacterized protei 90.8 2.5 5.4E-05 40.5 10.2 53 257-309 144-196 (290)
62 PRK04406 hypothetical protein; 90.8 2.2 4.7E-05 33.7 8.4 53 259-311 8-60 (75)
63 PF10224 DUF2205: Predicted co 90.8 1.4 3.1E-05 35.4 7.4 47 258-304 19-65 (80)
64 PF04880 NUDE_C: NUDE protein, 90.8 0.45 9.7E-06 43.0 5.1 46 257-306 2-47 (166)
65 COG4026 Uncharacterized protei 90.7 1.7 3.7E-05 41.6 9.0 57 254-310 134-190 (290)
66 PF13851 GAS: Growth-arrest sp 90.6 7.7 0.00017 35.7 13.1 79 232-310 70-163 (201)
67 PRK02119 hypothetical protein; 90.6 2.2 4.8E-05 33.5 8.2 49 255-310 9-57 (73)
68 KOG1853 LIS1-interacting prote 90.6 1.6 3.5E-05 42.4 8.8 55 257-311 54-119 (333)
69 PF04102 SlyX: SlyX; InterPro 90.4 1.6 3.4E-05 33.7 7.2 49 255-303 4-52 (69)
70 COG4467 Regulator of replicati 90.2 1.2 2.7E-05 37.9 6.9 47 255-301 8-54 (114)
71 PRK04325 hypothetical protein; 90.2 2.2 4.9E-05 33.5 7.9 49 256-311 10-58 (74)
72 PF15070 GOLGA2L5: Putative go 90.0 5.4 0.00012 42.7 13.1 74 241-314 108-219 (617)
73 PF08647 BRE1: BRE1 E3 ubiquit 89.9 9.5 0.00021 31.1 12.1 74 237-310 6-79 (96)
74 PF04102 SlyX: SlyX; InterPro 89.8 2.2 4.7E-05 32.9 7.5 53 259-311 1-53 (69)
75 PF11932 DUF3450: Protein of u 89.8 6.5 0.00014 36.8 12.2 38 263-300 57-94 (251)
76 TIGR02894 DNA_bind_RsfA transc 89.8 2.8 6.2E-05 37.8 9.3 55 258-312 100-154 (161)
77 PF08317 Spc7: Spc7 kinetochor 89.7 2.9 6.3E-05 40.8 10.1 59 255-313 209-267 (325)
78 PF09726 Macoilin: Transmembra 89.7 5.2 0.00011 43.4 12.8 54 260-313 543-610 (697)
79 PF12718 Tropomyosin_1: Tropom 89.6 3.4 7.4E-05 36.1 9.5 16 298-313 74-89 (143)
80 KOG0977 Nuclear envelope prote 89.5 3 6.4E-05 44.1 10.5 66 248-313 35-136 (546)
81 TIGR00219 mreC rod shape-deter 89.3 0.83 1.8E-05 44.0 6.0 36 263-298 67-106 (283)
82 PF10224 DUF2205: Predicted co 89.2 3.1 6.7E-05 33.5 8.2 58 253-310 6-64 (80)
83 PRK02793 phi X174 lysis protei 89.2 3.1 6.7E-05 32.5 8.0 50 255-311 8-57 (72)
84 KOG3119 Basic region leucine z 89.2 2.4 5.1E-05 40.7 8.9 35 279-313 218-252 (269)
85 PRK00846 hypothetical protein; 89.0 3.5 7.6E-05 33.0 8.3 53 259-311 10-62 (77)
86 PRK00295 hypothetical protein; 88.6 4.1 9E-05 31.5 8.3 50 255-311 5-54 (68)
87 PF14662 CCDC155: Coiled-coil 88.6 3.2 7E-05 38.5 8.9 53 258-310 4-56 (193)
88 PF14197 Cep57_CLD_2: Centroso 88.5 2.8 6.1E-05 32.6 7.3 49 256-304 20-68 (69)
89 PF10506 MCC-bdg_PDZ: PDZ doma 88.5 3.4 7.4E-05 32.2 7.8 56 259-314 2-57 (67)
90 PF10805 DUF2730: Protein of u 88.3 4.5 9.8E-05 33.6 8.9 57 254-310 34-92 (106)
91 PF07407 Seadorna_VP6: Seadorn 88.2 1.6 3.6E-05 43.6 7.2 32 263-296 33-64 (420)
92 PF14662 CCDC155: Coiled-coil 88.1 6.5 0.00014 36.5 10.6 42 258-299 98-139 (193)
93 PF12325 TMF_TATA_bd: TATA ele 88.1 5.5 0.00012 34.2 9.5 16 298-313 97-112 (120)
94 PF04977 DivIC: Septum formati 88.1 1.9 4.1E-05 32.6 6.1 25 256-280 25-49 (80)
95 PF11180 DUF2968: Protein of u 87.9 16 0.00035 33.9 13.0 84 231-315 103-186 (192)
96 smart00340 HALZ homeobox assoc 87.9 1.1 2.3E-05 32.4 4.2 26 279-304 8-33 (44)
97 PF09755 DUF2046: Uncharacteri 87.8 3.2 6.9E-05 41.0 8.9 57 258-314 23-79 (310)
98 PF05278 PEARLI-4: Arabidopsis 87.7 12 0.00025 36.5 12.5 57 254-310 206-262 (269)
99 smart00338 BRLZ basic region l 87.6 2.3 5E-05 31.8 6.3 37 277-313 27-63 (65)
100 PHA02562 46 endonuclease subun 87.6 9.2 0.0002 39.0 12.5 52 255-306 337-388 (562)
101 PF02403 Seryl_tRNA_N: Seryl-t 87.5 11 0.00023 30.7 10.6 54 262-315 43-99 (108)
102 PF15035 Rootletin: Ciliary ro 87.4 5.2 0.00011 36.5 9.5 60 255-314 67-126 (182)
103 PF00170 bZIP_1: bZIP transcri 87.4 2.7 5.9E-05 31.4 6.5 37 276-312 26-62 (64)
104 PRK02119 hypothetical protein; 87.2 4.1 8.9E-05 32.0 7.6 52 257-315 4-55 (73)
105 PF05266 DUF724: Protein of un 87.2 13 0.00029 34.0 12.1 59 249-307 125-183 (190)
106 COG4942 Membrane-bound metallo 87.2 7.4 0.00016 40.0 11.4 69 234-302 38-106 (420)
107 PF09304 Cortex-I_coil: Cortex 87.1 18 0.00039 30.8 12.9 63 248-310 9-71 (107)
108 PF12777 MT: Microtubule-bindi 86.8 3.7 8E-05 40.3 8.8 62 256-317 229-290 (344)
109 PF12329 TMF_DNA_bd: TATA elem 86.8 8.7 0.00019 30.1 9.2 61 256-316 6-66 (74)
110 PF12718 Tropomyosin_1: Tropom 86.8 6.6 0.00014 34.3 9.5 61 255-315 35-98 (143)
111 COG4942 Membrane-bound metallo 86.8 13 0.00027 38.4 12.7 18 255-272 66-83 (420)
112 PF04156 IncA: IncA protein; 86.7 6.3 0.00014 34.9 9.5 55 260-314 128-182 (191)
113 PF10211 Ax_dynein_light: Axon 86.4 16 0.00034 33.4 12.0 59 257-315 122-188 (189)
114 PF09728 Taxilin: Myosin-like 86.3 5.6 0.00012 39.0 9.7 62 255-316 244-305 (309)
115 PF12808 Mto2_bdg: Micro-tubul 86.1 2.3 5E-05 31.7 5.3 50 252-304 1-50 (52)
116 PRK00736 hypothetical protein; 86.0 6.1 0.00013 30.5 7.9 49 255-310 5-53 (68)
117 PF08826 DMPK_coil: DMPK coile 86.0 6.4 0.00014 30.2 7.9 42 260-308 16-57 (61)
118 PF09738 DUF2051: Double stran 86.0 12 0.00026 36.8 11.8 85 227-314 85-171 (302)
119 PF07888 CALCOCO1: Calcium bin 85.8 16 0.00034 38.9 13.2 9 111-119 50-58 (546)
120 PRK02793 phi X174 lysis protei 85.7 5.6 0.00012 31.1 7.6 50 259-315 5-54 (72)
121 PF10226 DUF2216: Uncharacteri 85.6 14 0.0003 34.4 11.3 86 231-316 20-127 (195)
122 PF06810 Phage_GP20: Phage min 85.4 6.2 0.00013 35.0 8.7 44 264-307 22-68 (155)
123 PRK00295 hypothetical protein; 85.4 7.1 0.00015 30.2 8.0 49 260-315 3-51 (68)
124 KOG1414 Transcriptional activa 85.1 0.043 9.2E-07 55.0 -5.7 54 229-282 149-206 (395)
125 PRK09039 hypothetical protein; 85.0 8.6 0.00019 38.1 10.4 6 115-120 41-46 (343)
126 PF04849 HAP1_N: HAP1 N-termin 84.7 7 0.00015 38.6 9.5 24 109-132 93-116 (306)
127 PF08232 Striatin: Striatin fa 84.7 9.2 0.0002 33.1 9.2 30 285-314 34-63 (134)
128 PF08172 CASP_C: CASP C termin 84.5 5.2 0.00011 38.2 8.3 16 114-129 17-32 (248)
129 PF05278 PEARLI-4: Arabidopsis 84.4 30 0.00065 33.7 13.4 68 251-318 196-263 (269)
130 PF14915 CCDC144C: CCDC144C pr 84.4 12 0.00027 36.9 10.9 72 243-314 181-252 (305)
131 COG1579 Zn-ribbon protein, pos 84.3 28 0.00062 33.3 13.1 59 254-312 88-146 (239)
132 TIGR02209 ftsL_broad cell divi 84.1 6.4 0.00014 30.4 7.4 33 272-304 27-59 (85)
133 PF04111 APG6: Autophagy prote 84.1 20 0.00043 35.2 12.3 55 256-310 79-133 (314)
134 PF15294 Leu_zip: Leucine zipp 84.0 3.9 8.5E-05 39.9 7.3 45 260-304 130-174 (278)
135 PF09726 Macoilin: Transmembra 84.0 2.9 6.2E-05 45.3 7.1 47 260-306 423-469 (697)
136 KOG1029 Endocytic adaptor prot 83.8 14 0.0003 41.1 11.9 31 285-315 432-462 (1118)
137 COG2433 Uncharacterized conser 83.8 12 0.00027 40.2 11.4 32 255-286 436-467 (652)
138 PF10186 Atg14: UV radiation r 83.7 33 0.00072 31.7 13.2 33 258-290 66-98 (302)
139 PHA03162 hypothetical protein; 83.7 3.9 8.4E-05 36.0 6.5 29 251-279 9-37 (135)
140 COG3883 Uncharacterized protei 83.7 9.1 0.0002 37.1 9.6 56 258-313 48-103 (265)
141 PRK13922 rod shape-determining 83.7 8.1 0.00018 36.4 9.3 36 264-299 71-109 (276)
142 PRK10803 tol-pal system protei 83.6 4.8 0.0001 38.3 7.7 52 255-306 54-105 (263)
143 PF04899 MbeD_MobD: MbeD/MobD 83.6 9.7 0.00021 29.9 8.1 33 274-306 33-65 (70)
144 PRK04325 hypothetical protein; 83.5 7.9 0.00017 30.4 7.6 53 257-316 4-56 (74)
145 PF07798 DUF1640: Protein of u 83.4 7.3 0.00016 34.8 8.4 45 262-306 51-96 (177)
146 KOG4403 Cell surface glycoprot 83.4 12 0.00025 39.1 10.6 77 233-313 241-325 (575)
147 PF02403 Seryl_tRNA_N: Seryl-t 83.2 8.5 0.00018 31.2 8.1 76 241-316 9-93 (108)
148 PRK04406 hypothetical protein; 83.2 8.1 0.00017 30.5 7.6 49 255-303 11-59 (75)
149 TIGR03752 conj_TIGR03752 integ 83.1 5.8 0.00013 41.3 8.5 55 259-313 84-139 (472)
150 PRK00736 hypothetical protein; 82.9 9.3 0.0002 29.5 7.7 19 296-314 32-50 (68)
151 PF10146 zf-C4H2: Zinc finger- 82.9 13 0.00029 35.1 10.3 65 251-315 28-92 (230)
152 TIGR02231 conserved hypothetic 82.6 25 0.00053 36.3 12.9 44 273-316 128-171 (525)
153 TIGR01843 type_I_hlyD type I s 82.6 17 0.00038 35.1 11.3 21 294-314 250-270 (423)
154 KOG1414 Transcriptional activa 82.2 0.62 1.3E-05 46.8 1.2 52 233-284 284-336 (395)
155 PRK14127 cell division protein 82.1 7.9 0.00017 32.9 7.6 13 301-313 89-101 (109)
156 PHA03155 hypothetical protein; 82.1 10 0.00022 32.7 8.2 26 255-280 8-33 (115)
157 PF10174 Cast: RIM-binding pro 82.0 8.4 0.00018 42.4 9.7 64 251-314 297-360 (775)
158 KOG0982 Centrosomal protein Nu 81.8 20 0.00043 37.3 11.6 60 257-316 299-358 (502)
159 PF06785 UPF0242: Uncharacteri 81.7 20 0.00043 36.3 11.3 79 234-316 75-167 (401)
160 smart00787 Spc7 Spc7 kinetocho 81.7 10 0.00022 37.4 9.3 59 256-314 205-263 (312)
161 PF10805 DUF2730: Protein of u 81.6 17 0.00037 30.2 9.3 47 255-308 49-97 (106)
162 PF04642 DUF601: Protein of un 81.5 1.5 3.3E-05 42.4 3.5 60 255-314 217-276 (311)
163 KOG1029 Endocytic adaptor prot 81.5 9.7 0.00021 42.2 9.7 21 296-316 485-505 (1118)
164 PF07926 TPR_MLP1_2: TPR/MLP1/ 81.4 23 0.0005 30.1 10.4 23 277-299 106-128 (132)
165 KOG2077 JNK/SAPK-associated pr 81.4 4.3 9.4E-05 43.4 7.0 52 258-309 325-376 (832)
166 PF06632 XRCC4: DNA double-str 81.4 13 0.00027 37.3 9.9 17 296-312 193-209 (342)
167 PF06216 RTBV_P46: Rice tungro 81.2 11 0.00024 36.9 9.1 54 255-315 64-117 (389)
168 KOG0804 Cytoplasmic Zn-finger 80.8 8.7 0.00019 39.9 8.7 52 265-316 378-429 (493)
169 PF05812 Herpes_BLRF2: Herpesv 80.8 12 0.00025 32.4 8.2 30 253-282 1-30 (118)
170 KOG4571 Activating transcripti 80.7 11 0.00024 37.1 9.0 36 279-314 251-286 (294)
171 smart00787 Spc7 Spc7 kinetocho 80.6 41 0.0009 33.1 13.1 7 39-45 12-18 (312)
172 KOG1962 B-cell receptor-associ 80.5 6.2 0.00013 37.2 7.0 34 266-299 176-209 (216)
173 PRK13182 racA polar chromosome 80.3 11 0.00023 34.3 8.3 20 296-315 124-143 (175)
174 KOG2391 Vacuolar sorting prote 80.2 14 0.0003 37.3 9.7 54 255-308 225-278 (365)
175 PF06103 DUF948: Bacterial pro 80.2 25 0.00054 27.7 9.5 62 256-317 27-88 (90)
176 PF15397 DUF4618: Domain of un 80.1 30 0.00065 33.5 11.7 54 260-313 177-230 (258)
177 PF00038 Filament: Intermediat 79.9 50 0.0011 31.3 13.2 42 264-305 211-252 (312)
178 PF07889 DUF1664: Protein of u 79.7 31 0.00066 30.0 10.5 58 254-311 67-124 (126)
179 KOG3564 GTPase-activating prot 79.6 17 0.00036 38.4 10.3 83 229-314 26-108 (604)
180 PF01166 TSC22: TSC-22/dip/bun 79.5 2.5 5.4E-05 32.3 3.4 29 270-298 15-43 (59)
181 TIGR03495 phage_LysB phage lys 79.5 21 0.00045 31.4 9.6 52 264-315 35-86 (135)
182 PF05667 DUF812: Protein of un 79.4 15 0.00033 39.2 10.4 56 255-310 328-383 (594)
183 KOG0250 DNA repair protein RAD 79.4 24 0.00051 40.3 12.1 58 253-310 370-428 (1074)
184 KOG0933 Structural maintenance 79.1 26 0.00056 39.9 12.1 53 263-315 816-868 (1174)
185 PF03962 Mnd1: Mnd1 family; I 79.1 13 0.00028 33.9 8.6 18 299-316 137-154 (188)
186 PF13870 DUF4201: Domain of un 78.8 46 0.001 29.4 12.9 59 256-314 106-176 (177)
187 COG2433 Uncharacterized conser 78.8 13 0.00028 40.1 9.4 15 270-284 444-458 (652)
188 PF03961 DUF342: Protein of un 78.7 14 0.00031 37.4 9.6 31 285-315 377-407 (451)
189 PF04111 APG6: Autophagy prote 78.6 11 0.00025 36.8 8.6 29 254-282 63-91 (314)
190 PF08317 Spc7: Spc7 kinetochor 78.6 49 0.0011 32.3 12.9 51 257-307 151-201 (325)
191 PF09789 DUF2353: Uncharacteri 78.3 18 0.00038 36.0 9.8 46 258-303 68-113 (319)
192 PF13851 GAS: Growth-arrest sp 78.3 20 0.00042 33.0 9.5 10 302-311 91-100 (201)
193 KOG1962 B-cell receptor-associ 78.2 24 0.00053 33.3 10.2 44 260-303 149-192 (216)
194 PF02388 FemAB: FemAB family; 78.1 12 0.00027 37.5 8.8 57 254-314 241-297 (406)
195 KOG0288 WD40 repeat protein Ti 78.0 7.8 0.00017 39.9 7.3 57 257-313 29-85 (459)
196 PF10481 CENP-F_N: Cenp-F N-te 78.0 33 0.00072 33.8 11.3 84 231-314 15-126 (307)
197 PF06428 Sec2p: GDP/GTP exchan 78.0 14 0.00031 30.7 7.8 56 257-312 10-66 (100)
198 KOG0804 Cytoplasmic Zn-finger 77.9 33 0.00072 35.9 11.8 74 238-314 368-445 (493)
199 PF07407 Seadorna_VP6: Seadorn 77.8 3.2 6.9E-05 41.7 4.4 30 256-285 33-62 (420)
200 PRK00888 ftsB cell division pr 77.5 10 0.00023 31.5 6.9 33 251-283 30-62 (105)
201 PHA02562 46 endonuclease subun 77.5 46 0.00099 34.0 12.9 27 282-308 219-245 (562)
202 PF15058 Speriolin_N: Sperioli 77.3 5.7 0.00012 37.0 5.7 34 257-298 7-40 (200)
203 PF05529 Bap31: B-cell recepto 77.3 22 0.00048 31.8 9.5 37 268-304 153-189 (192)
204 PRK10803 tol-pal system protei 77.1 12 0.00025 35.7 8.0 44 252-295 58-101 (263)
205 PF08172 CASP_C: CASP C termin 77.1 11 0.00023 36.1 7.6 41 256-303 94-134 (248)
206 PF12711 Kinesin-relat_1: Kine 76.9 16 0.00035 29.9 7.6 42 266-307 21-68 (86)
207 PF11577 NEMO: NF-kappa-B esse 76.8 26 0.00055 27.5 8.4 59 259-317 3-65 (68)
208 PRK00846 hypothetical protein; 76.5 19 0.00042 28.8 7.8 51 254-304 12-62 (77)
209 KOG0250 DNA repair protein RAD 76.5 43 0.00093 38.3 13.0 73 239-311 363-436 (1074)
210 PF00261 Tropomyosin: Tropomyo 76.4 14 0.00031 34.3 8.2 60 257-316 94-153 (237)
211 KOG1319 bHLHZip transcription 76.4 45 0.00096 31.4 11.1 38 279-316 115-152 (229)
212 PLN02678 seryl-tRNA synthetase 76.1 36 0.00077 35.3 11.6 56 260-315 45-103 (448)
213 PF04977 DivIC: Septum formati 76.1 18 0.00039 27.2 7.4 43 272-314 20-62 (80)
214 PF05837 CENP-H: Centromere pr 76.1 21 0.00046 29.6 8.3 56 256-312 18-73 (106)
215 PF07926 TPR_MLP1_2: TPR/MLP1/ 76.0 41 0.00088 28.6 10.3 30 277-306 60-89 (132)
216 PRK13729 conjugal transfer pil 76.0 14 0.0003 38.7 8.6 52 255-306 69-120 (475)
217 PF05103 DivIVA: DivIVA protei 75.9 1.6 3.4E-05 36.2 1.6 45 255-299 25-69 (131)
218 PF06419 COG6: Conserved oligo 75.9 47 0.001 35.5 12.8 64 254-317 44-107 (618)
219 KOG0243 Kinesin-like protein [ 75.8 44 0.00094 38.2 12.9 21 112-132 240-260 (1041)
220 COG2900 SlyX Uncharacterized p 75.8 25 0.00054 28.0 8.1 52 260-311 6-57 (72)
221 PRK14127 cell division protein 75.8 8 0.00017 32.8 5.7 26 255-280 30-55 (109)
222 KOG2129 Uncharacterized conser 75.6 5.1 0.00011 41.4 5.3 57 258-314 46-102 (552)
223 KOG0977 Nuclear envelope prote 75.6 33 0.00071 36.6 11.3 63 245-307 131-193 (546)
224 COG1196 Smc Chromosome segrega 75.5 39 0.00085 38.5 12.8 57 256-312 440-496 (1163)
225 cd07596 BAR_SNX The Bin/Amphip 75.5 55 0.0012 28.6 12.1 51 238-288 114-171 (218)
226 PF15030 DUF4527: Protein of u 75.4 69 0.0015 31.2 12.5 87 230-316 11-98 (277)
227 PF04849 HAP1_N: HAP1 N-termin 75.4 26 0.00056 34.7 10.0 26 270-295 235-260 (306)
228 PRK04863 mukB cell division pr 75.3 43 0.00094 39.6 13.2 20 234-253 321-340 (1486)
229 PF09744 Jnk-SapK_ap_N: JNK_SA 75.1 62 0.0013 29.0 12.1 47 259-305 93-139 (158)
230 PF12709 Kinetocho_Slk19: Cent 75.0 15 0.00033 30.1 6.9 8 261-268 33-40 (87)
231 PF00769 ERM: Ezrin/radixin/mo 74.9 51 0.0011 31.2 11.6 36 274-309 80-115 (246)
232 PF00038 Filament: Intermediat 74.9 31 0.00066 32.7 10.2 26 257-282 225-250 (312)
233 PF14712 Snapin_Pallidin: Snap 74.8 35 0.00075 26.9 8.9 60 256-315 15-89 (92)
234 PF04949 Transcrip_act: Transc 74.4 52 0.0011 29.7 10.7 55 230-284 40-99 (159)
235 PF05700 BCAS2: Breast carcino 74.4 29 0.00063 32.1 9.6 55 256-310 137-209 (221)
236 PF14988 DUF4515: Domain of un 74.3 44 0.00096 31.0 10.8 52 260-311 154-205 (206)
237 PF13935 Ead_Ea22: Ead/Ea22-li 74.1 25 0.00054 30.4 8.6 15 295-309 124-138 (139)
238 TIGR02977 phageshock_pspA phag 73.9 51 0.0011 30.4 11.1 53 255-307 99-151 (219)
239 PF00769 ERM: Ezrin/radixin/mo 73.9 27 0.00058 33.1 9.4 70 245-314 23-99 (246)
240 KOG4643 Uncharacterized coiled 73.9 42 0.0009 38.4 12.0 83 233-315 372-454 (1195)
241 PF09744 Jnk-SapK_ap_N: JNK_SA 73.9 48 0.001 29.7 10.5 15 266-280 86-100 (158)
242 PF15619 Lebercilin: Ciliary p 73.9 45 0.00098 30.7 10.6 31 245-275 8-39 (194)
243 PF05377 FlaC_arch: Flagella a 73.8 9.9 0.00021 28.7 5.2 21 257-277 2-22 (55)
244 KOG2077 JNK/SAPK-associated pr 73.4 13 0.00029 40.0 7.8 58 259-316 298-369 (832)
245 PF10211 Ax_dynein_light: Axon 73.3 67 0.0014 29.3 11.5 17 108-124 32-48 (189)
246 KOG2991 Splicing regulator [RN 73.3 16 0.00035 35.7 7.8 62 255-316 236-297 (330)
247 PF08826 DMPK_coil: DMPK coile 73.2 40 0.00086 25.9 9.8 29 257-285 27-55 (61)
248 PF13094 CENP-Q: CENP-Q, a CEN 73.1 33 0.00073 29.8 9.3 43 256-298 42-84 (160)
249 COG1340 Uncharacterized archae 73.1 96 0.0021 30.7 13.2 74 234-307 26-100 (294)
250 PF10168 Nup88: Nuclear pore c 73.0 62 0.0013 35.5 13.0 29 256-284 580-608 (717)
251 KOG4797 Transcriptional regula 72.7 8 0.00017 33.2 5.0 27 271-297 69-95 (123)
252 PF07716 bZIP_2: Basic region 72.7 12 0.00025 27.2 5.3 29 276-304 25-53 (54)
253 KOG4643 Uncharacterized coiled 72.6 20 0.00044 40.7 9.3 31 253-283 528-558 (1195)
254 PF15035 Rootletin: Ciliary ro 72.5 30 0.00065 31.6 9.0 26 262-287 88-113 (182)
255 TIGR01000 bacteriocin_acc bact 72.4 55 0.0012 33.2 11.8 29 287-315 288-316 (457)
256 PF04871 Uso1_p115_C: Uso1 / p 72.4 62 0.0013 28.1 10.6 19 257-275 57-75 (136)
257 PF10046 BLOC1_2: Biogenesis o 72.1 52 0.0011 26.9 9.6 54 258-315 45-98 (99)
258 PRK05431 seryl-tRNA synthetase 72.1 55 0.0012 33.4 11.7 28 287-314 70-97 (425)
259 KOG3650 Predicted coiled-coil 72.1 17 0.00037 30.9 6.7 41 263-303 64-104 (120)
260 KOG1103 Predicted coiled-coil 71.6 21 0.00046 36.4 8.5 66 244-309 227-292 (561)
261 KOG3335 Predicted coiled-coil 71.5 9.6 0.00021 35.1 5.6 50 232-287 89-138 (181)
262 KOG0288 WD40 repeat protein Ti 71.4 43 0.00094 34.7 10.7 29 253-281 46-74 (459)
263 PF15290 Syntaphilin: Golgi-lo 71.2 34 0.00075 33.7 9.5 61 255-315 89-149 (305)
264 KOG1103 Predicted coiled-coil 71.1 44 0.00096 34.2 10.6 53 254-306 131-183 (561)
265 KOG2264 Exostosin EXT1L [Signa 70.9 32 0.0007 37.2 9.9 56 255-310 93-148 (907)
266 PF04999 FtsL: Cell division p 70.8 14 0.00031 29.5 5.9 38 267-304 33-70 (97)
267 PF10205 KLRAQ: Predicted coil 70.8 61 0.0013 27.4 9.7 31 277-307 41-71 (102)
268 TIGR02231 conserved hypothetic 70.6 61 0.0013 33.5 11.9 48 264-311 126-173 (525)
269 PF05837 CENP-H: Centromere pr 70.3 21 0.00044 29.7 6.9 38 266-303 7-44 (106)
270 KOG4196 bZIP transcription fac 70.2 63 0.0014 28.6 10.0 56 254-310 46-101 (135)
271 PF07989 Microtub_assoc: Micro 70.1 52 0.0011 26.0 9.1 37 278-314 38-74 (75)
272 PF14257 DUF4349: Domain of un 70.1 32 0.00069 32.2 9.0 24 291-314 170-193 (262)
273 COG2919 Septum formation initi 69.9 66 0.0014 27.1 10.8 40 273-312 54-93 (117)
274 PF07200 Mod_r: Modifier of ru 69.8 70 0.0015 27.3 10.8 72 238-311 39-110 (150)
275 PF08537 NBP1: Fungal Nap bind 69.4 97 0.0021 31.1 12.4 81 233-313 121-219 (323)
276 PF09727 CortBP2: Cortactin-bi 69.4 75 0.0016 29.6 10.9 46 264-309 136-181 (192)
277 PF03980 Nnf1: Nnf1 ; InterPr 69.3 8.1 0.00018 31.6 4.3 31 252-282 77-107 (109)
278 PF15070 GOLGA2L5: Putative go 69.1 87 0.0019 33.8 12.9 49 267-315 85-133 (617)
279 PF01166 TSC22: TSC-22/dip/bun 69.0 8.6 0.00019 29.5 4.0 20 256-275 22-41 (59)
280 PF15619 Lebercilin: Ciliary p 68.8 38 0.00083 31.2 9.0 40 272-311 153-192 (194)
281 PRK10698 phage shock protein P 68.7 76 0.0016 29.6 11.1 53 256-308 100-152 (222)
282 PF09738 DUF2051: Double stran 68.7 34 0.00074 33.7 9.1 53 262-314 112-164 (302)
283 KOG0161 Myosin class II heavy 68.5 67 0.0015 39.1 12.8 53 259-311 1481-1540(1930)
284 PF03233 Cauli_AT: Aphid trans 68.5 14 0.00031 33.5 5.9 50 258-318 114-163 (163)
285 KOG0243 Kinesin-like protein [ 68.4 44 0.00094 38.2 10.8 39 259-297 445-483 (1041)
286 PF11544 Spc42p: Spindle pole 68.2 21 0.00045 28.7 6.1 49 257-305 7-55 (76)
287 COG3937 Uncharacterized conser 68.1 29 0.00063 29.6 7.3 42 274-315 66-108 (108)
288 PF05335 DUF745: Protein of un 68.1 59 0.0013 30.0 10.0 64 251-314 63-126 (188)
289 TIGR00414 serS seryl-tRNA synt 67.8 29 0.00063 35.2 8.7 55 260-314 42-100 (418)
290 PF05700 BCAS2: Breast carcino 67.7 30 0.00065 32.0 8.2 40 273-312 179-218 (221)
291 PRK12705 hypothetical protein; 67.6 1.2E+02 0.0026 32.1 13.3 15 240-254 55-69 (508)
292 PF09486 HrpB7: Bacterial type 67.6 55 0.0012 29.5 9.5 56 255-310 79-134 (158)
293 PF01486 K-box: K-box region; 67.5 20 0.00044 28.9 6.2 31 270-300 69-99 (100)
294 PF09789 DUF2353: Uncharacteri 67.3 51 0.0011 32.9 10.0 31 282-312 71-101 (319)
295 PF10146 zf-C4H2: Zinc finger- 67.2 37 0.0008 32.1 8.7 52 254-305 49-103 (230)
296 PF10212 TTKRSYEDQ: Predicted 67.1 68 0.0015 34.0 11.3 53 259-311 424-476 (518)
297 PF11365 DUF3166: Protein of u 67.1 26 0.00057 29.2 6.8 26 260-285 20-45 (96)
298 TIGR03185 DNA_S_dndD DNA sulfu 67.0 60 0.0013 34.5 11.2 42 272-313 424-465 (650)
299 PF10779 XhlA: Haemolysin XhlA 66.9 39 0.00084 25.9 7.4 38 277-314 14-51 (71)
300 PF04728 LPP: Lipoprotein leuc 66.8 54 0.0012 24.9 8.4 35 256-290 4-38 (56)
301 PF05384 DegS: Sensor protein 66.8 98 0.0021 27.9 11.7 47 239-285 18-71 (159)
302 KOG0946 ER-Golgi vesicle-tethe 66.7 35 0.00077 38.1 9.4 63 238-300 654-716 (970)
303 PRK02224 chromosome segregatio 66.6 51 0.0011 35.8 10.8 14 112-125 112-125 (880)
304 KOG0483 Transcription factor H 66.6 7.9 0.00017 36.0 4.1 39 274-312 110-148 (198)
305 PF04340 DUF484: Protein of un 66.4 20 0.00044 32.9 6.7 50 257-310 42-91 (225)
306 PF14817 HAUS5: HAUS augmin-li 65.9 46 0.001 36.0 10.1 61 252-312 97-164 (632)
307 PF14282 FlxA: FlxA-like prote 65.9 52 0.0011 27.3 8.4 20 255-274 51-70 (106)
308 PF10241 KxDL: Uncharacterized 65.4 70 0.0015 25.7 10.9 61 255-315 22-82 (88)
309 PF13863 DUF4200: Domain of un 65.3 77 0.0017 26.1 9.5 30 285-314 76-105 (126)
310 PRK05892 nucleoside diphosphat 65.2 32 0.00069 30.6 7.5 55 255-309 11-73 (158)
311 PRK13922 rod shape-determining 64.9 63 0.0014 30.4 9.9 19 273-291 73-91 (276)
312 KOG4360 Uncharacterized coiled 64.7 41 0.00089 35.8 9.1 42 257-298 221-262 (596)
313 PF12777 MT: Microtubule-bindi 64.7 24 0.00052 34.7 7.3 24 252-275 239-262 (344)
314 KOG0999 Microtubule-associated 64.0 62 0.0013 35.0 10.3 71 231-301 114-188 (772)
315 KOG4360 Uncharacterized coiled 63.9 44 0.00095 35.6 9.2 59 251-309 194-252 (596)
316 TIGR02209 ftsL_broad cell divi 63.7 27 0.00058 26.9 6.0 31 252-282 28-58 (85)
317 PF05377 FlaC_arch: Flagella a 63.7 39 0.00085 25.6 6.6 23 259-281 11-33 (55)
318 PTZ00454 26S protease regulato 63.6 26 0.00056 35.4 7.4 14 262-275 29-42 (398)
319 KOG0161 Myosin class II heavy 63.4 94 0.002 38.0 12.7 30 256-285 916-945 (1930)
320 TIGR01843 type_I_hlyD type I s 63.2 1.5E+02 0.0032 28.7 13.0 13 299-311 248-260 (423)
321 KOG4343 bZIP transcription fac 63.1 35 0.00075 36.6 8.3 9 230-238 274-282 (655)
322 PF09730 BicD: Microtubule-ass 63.1 1.1E+02 0.0023 33.8 12.3 47 257-303 71-117 (717)
323 PF09602 PhaP_Bmeg: Polyhydrox 63.1 1.2E+02 0.0026 27.7 10.8 70 245-314 24-102 (165)
324 PF04012 PspA_IM30: PspA/IM30 63.0 1.1E+02 0.0024 27.8 10.8 43 258-300 101-143 (221)
325 KOG0995 Centromere-associated 63.0 26 0.00055 37.5 7.4 15 114-128 108-122 (581)
326 PF13870 DUF4201: Domain of un 63.0 80 0.0017 27.9 9.7 32 283-314 84-115 (177)
327 KOG3650 Predicted coiled-coil 62.7 37 0.00081 28.9 6.9 40 254-293 69-108 (120)
328 PF13747 DUF4164: Domain of un 62.6 76 0.0017 25.7 8.6 52 266-317 36-87 (89)
329 PF10168 Nup88: Nuclear pore c 62.5 60 0.0013 35.5 10.3 57 258-314 561-617 (717)
330 PF04012 PspA_IM30: PspA/IM30 62.3 67 0.0015 29.1 9.3 37 266-302 102-138 (221)
331 KOG0239 Kinesin (KAR3 subfamil 62.1 86 0.0019 34.2 11.3 51 257-307 243-293 (670)
332 PF05667 DUF812: Protein of un 62.0 39 0.00085 36.2 8.7 50 255-304 335-384 (594)
333 COG3352 FlaC Putative archaeal 61.9 66 0.0014 29.1 8.8 60 255-314 79-139 (157)
334 PF00261 Tropomyosin: Tropomyo 61.9 1.4E+02 0.003 27.8 13.6 56 257-312 171-226 (237)
335 PF04375 HemX: HemX; InterPro 61.8 66 0.0014 32.1 9.8 13 294-306 104-116 (372)
336 PF04136 Sec34: Sec34-like fam 61.7 80 0.0017 27.9 9.3 57 255-311 21-77 (157)
337 PF13815 Dzip-like_N: Iguana/D 61.6 72 0.0016 26.7 8.7 23 287-309 91-113 (118)
338 PF10828 DUF2570: Protein of u 61.3 94 0.002 25.8 10.7 53 257-309 34-86 (110)
339 PF07558 Shugoshin_N: Shugoshi 60.9 9.9 0.00022 27.3 2.9 23 274-296 19-41 (46)
340 TIGR00606 rad50 rad50. This fa 60.9 1.2E+02 0.0026 35.2 12.8 32 242-273 844-875 (1311)
341 PF10481 CENP-F_N: Cenp-F N-te 60.8 50 0.0011 32.6 8.4 61 253-313 16-83 (307)
342 KOG0971 Microtubule-associated 60.8 58 0.0012 37.1 9.7 64 251-314 406-472 (1243)
343 KOG3156 Uncharacterized membra 60.8 50 0.0011 31.4 8.1 39 269-307 101-140 (220)
344 PRK10698 phage shock protein P 60.6 1.1E+02 0.0024 28.5 10.5 49 262-310 99-147 (222)
345 KOG0946 ER-Golgi vesicle-tethe 60.6 90 0.002 35.1 11.1 15 31-45 386-400 (970)
346 PF11500 Cut12: Spindle pole b 60.3 78 0.0017 28.5 9.0 57 231-287 81-137 (152)
347 PRK10963 hypothetical protein; 60.0 24 0.00053 32.6 6.1 43 261-307 43-85 (223)
348 KOG0964 Structural maintenance 59.9 1.1E+02 0.0025 35.1 11.8 76 242-317 419-501 (1200)
349 PRK04863 mukB cell division pr 59.8 1.5E+02 0.0033 35.4 13.5 46 257-302 357-402 (1486)
350 KOG0933 Structural maintenance 59.5 1.4E+02 0.003 34.4 12.5 54 257-310 817-870 (1174)
351 PF10482 CtIP_N: Tumour-suppre 59.1 81 0.0017 27.4 8.4 26 287-312 39-64 (120)
352 PF13815 Dzip-like_N: Iguana/D 59.1 56 0.0012 27.3 7.6 36 270-305 81-116 (118)
353 PF12711 Kinesin-relat_1: Kine 59.0 60 0.0013 26.6 7.4 40 264-305 46-85 (86)
354 KOG3433 Protein involved in me 58.9 92 0.002 29.2 9.4 20 257-276 83-102 (203)
355 KOG0976 Rho/Rac1-interacting s 58.8 54 0.0012 36.9 9.1 24 230-253 101-124 (1265)
356 PF04871 Uso1_p115_C: Uso1 / p 58.8 1.2E+02 0.0027 26.3 11.0 47 254-300 61-108 (136)
357 KOG0995 Centromere-associated 58.7 81 0.0018 33.9 10.1 40 256-295 281-320 (581)
358 PF07200 Mod_r: Modifier of ru 58.6 89 0.0019 26.7 8.9 7 264-270 57-63 (150)
359 PF07558 Shugoshin_N: Shugoshi 58.6 12 0.00026 27.0 2.9 37 270-306 8-44 (46)
360 KOG4603 TBP-1 interacting prot 58.0 1E+02 0.0022 28.7 9.4 13 303-315 169-181 (201)
361 PF13805 Pil1: Eisosome compon 58.0 46 0.001 32.5 7.7 67 234-304 127-193 (271)
362 KOG0982 Centrosomal protein Nu 57.8 51 0.0011 34.4 8.3 36 280-315 301-336 (502)
363 COG1792 MreC Cell shape-determ 57.6 33 0.00072 33.2 6.7 41 255-299 66-106 (284)
364 TIGR01000 bacteriocin_acc bact 57.5 72 0.0016 32.3 9.4 59 257-315 238-309 (457)
365 PF05557 MAD: Mitotic checkpoi 57.4 57 0.0012 35.2 9.1 25 258-282 506-530 (722)
366 COG1382 GimC Prefoldin, chaper 57.3 1.3E+02 0.0028 26.1 10.2 38 280-317 74-111 (119)
367 PLN02939 transferase, transfer 57.3 89 0.0019 35.6 10.7 35 281-315 224-258 (977)
368 PF05557 MAD: Mitotic checkpoi 57.1 11 0.00024 40.6 3.7 33 283-315 503-535 (722)
369 PLN02320 seryl-tRNA synthetase 57.1 1.6E+02 0.0035 31.1 12.1 58 256-313 94-160 (502)
370 PRK14160 heat shock protein Gr 57.1 70 0.0015 30.1 8.5 42 256-297 55-96 (211)
371 PF05600 DUF773: Protein of un 56.6 52 0.0011 34.6 8.4 46 256-301 447-492 (507)
372 PF10205 KLRAQ: Predicted coil 56.6 1.2E+02 0.0027 25.6 9.1 44 268-311 25-68 (102)
373 PF13166 AAA_13: AAA domain 56.6 1.6E+02 0.0035 31.1 12.2 59 257-315 405-463 (712)
374 PRK10636 putative ABC transpor 56.5 82 0.0018 33.5 10.0 59 255-313 563-628 (638)
375 PF09325 Vps5: Vps5 C terminal 56.5 1.4E+02 0.0031 26.8 10.3 48 241-288 135-189 (236)
376 PF14282 FlxA: FlxA-like prote 56.2 48 0.001 27.5 6.6 22 285-306 53-74 (106)
377 KOG4603 TBP-1 interacting prot 56.1 75 0.0016 29.5 8.3 30 287-316 120-149 (201)
378 PRK14872 rod shape-determining 56.1 37 0.00081 34.0 6.9 31 266-296 61-94 (337)
379 PLN02678 seryl-tRNA synthetase 56.0 1.2E+02 0.0025 31.6 10.7 63 254-316 32-97 (448)
380 TIGR00606 rad50 rad50. This fa 56.0 1.7E+02 0.0036 34.1 13.0 59 255-313 888-950 (1311)
381 PRK11147 ABC transporter ATPas 56.0 60 0.0013 34.3 8.9 56 257-312 570-631 (635)
382 KOG4807 F-actin binding protei 55.9 78 0.0017 33.0 9.2 56 253-308 391-460 (593)
383 PF05911 DUF869: Plant protein 55.7 65 0.0014 35.7 9.2 55 260-314 636-690 (769)
384 PF10883 DUF2681: Protein of u 55.6 48 0.001 27.2 6.3 39 263-301 24-64 (87)
385 PRK11546 zraP zinc resistance 55.6 70 0.0015 28.4 7.8 50 256-305 62-111 (143)
386 PF14915 CCDC144C: CCDC144C pr 55.5 2.2E+02 0.0047 28.5 11.9 54 258-311 217-299 (305)
387 PF05600 DUF773: Protein of un 55.5 83 0.0018 33.1 9.6 62 253-314 430-491 (507)
388 PF07246 Phlebovirus_NSM: Phle 55.4 99 0.0021 30.2 9.4 30 285-314 204-233 (264)
389 PF07889 DUF1664: Protein of u 55.4 1.1E+02 0.0023 26.7 8.7 49 266-314 65-113 (126)
390 PF10359 Fmp27_WPPW: RNA pol I 55.3 42 0.00091 34.6 7.4 54 256-309 171-226 (475)
391 PF04859 DUF641: Plant protein 55.1 51 0.0011 28.8 6.8 52 260-311 78-129 (131)
392 PF06548 Kinesin-related: Kine 55.1 72 0.0016 33.5 8.9 55 255-309 385-474 (488)
393 TIGR01010 BexC_CtrB_KpsE polys 55.0 1.5E+02 0.0033 28.9 10.9 12 110-121 65-76 (362)
394 COG3352 FlaC Putative archaeal 54.9 1.1E+02 0.0023 27.8 8.9 63 255-317 72-135 (157)
395 PF06428 Sec2p: GDP/GTP exchan 54.8 21 0.00046 29.8 4.2 55 257-311 17-72 (100)
396 PRK10361 DNA recombination pro 54.8 2.4E+02 0.0053 29.7 12.8 80 236-315 24-106 (475)
397 PF03670 UPF0184: Uncharacteri 54.8 87 0.0019 25.6 7.6 39 257-302 35-73 (83)
398 PF05529 Bap31: B-cell recepto 54.5 80 0.0017 28.2 8.2 25 290-314 154-178 (192)
399 PF03245 Phage_lysis: Bacterio 54.4 1.2E+02 0.0027 25.8 9.0 49 255-303 14-62 (125)
400 PRK04778 septation ring format 54.3 1.4E+02 0.003 31.5 11.1 59 257-315 378-436 (569)
401 TIGR00414 serS seryl-tRNA synt 54.2 1.8E+02 0.0038 29.7 11.5 61 255-315 30-94 (418)
402 PF03962 Mnd1: Mnd1 family; I 54.2 1.7E+02 0.0038 26.6 12.9 25 289-313 141-165 (188)
403 PF03980 Nnf1: Nnf1 ; InterPr 54.0 29 0.00062 28.4 4.9 32 273-304 77-108 (109)
404 KOG0980 Actin-binding protein 54.0 1.8E+02 0.0039 33.1 12.1 18 31-48 240-257 (980)
405 PF11180 DUF2968: Protein of u 53.9 1.4E+02 0.003 27.9 9.7 30 285-314 149-178 (192)
406 KOG0957 PHD finger protein [Ge 53.9 52 0.0011 35.2 7.7 62 257-318 440-501 (707)
407 PF14645 Chibby: Chibby family 53.6 51 0.0011 28.1 6.4 46 255-300 71-116 (116)
408 KOG0249 LAR-interacting protei 53.6 1.7E+02 0.0037 32.7 11.6 43 263-305 217-259 (916)
409 TIGR03545 conserved hypothetic 53.6 78 0.0017 33.7 9.2 67 246-312 182-259 (555)
410 PF11365 DUF3166: Protein of u 53.6 1.3E+02 0.0028 25.1 8.6 17 288-304 27-43 (96)
411 TIGR02132 phaR_Bmeg polyhydrox 53.5 80 0.0017 29.3 8.1 53 255-314 79-131 (189)
412 PF05622 HOOK: HOOK protein; 53.5 4.4 9.5E-05 43.5 0.0 56 251-306 321-379 (713)
413 KOG4673 Transcription factor T 53.5 1.5E+02 0.0031 33.1 11.1 23 289-311 579-601 (961)
414 PF08606 Prp19: Prp19/Pso4-lik 53.4 40 0.00087 26.7 5.3 32 278-309 10-41 (70)
415 PF04859 DUF641: Plant protein 53.1 45 0.00098 29.2 6.2 42 257-298 89-130 (131)
416 COG3879 Uncharacterized protei 53.0 67 0.0014 31.0 7.8 18 290-307 89-106 (247)
417 KOG0994 Extracellular matrix g 53.0 1.3E+02 0.0028 35.4 11.0 52 264-315 1691-1742(1758)
418 PF13874 Nup54: Nucleoporin co 52.9 48 0.001 28.6 6.4 60 255-314 65-124 (141)
419 TIGR02680 conserved hypothetic 52.5 2.3E+02 0.005 33.3 13.4 45 244-288 871-915 (1353)
420 PRK01156 chromosome segregatio 52.5 2.6E+02 0.0055 30.8 13.2 12 296-307 255-266 (895)
421 PF09403 FadA: Adhesion protei 52.1 1.5E+02 0.0032 25.8 9.1 59 235-295 34-101 (126)
422 PRK05431 seryl-tRNA synthetase 51.8 1.9E+02 0.0041 29.5 11.3 62 255-316 28-92 (425)
423 PF06216 RTBV_P46: Rice tungro 51.8 63 0.0014 31.8 7.5 47 240-289 66-112 (389)
424 PF11382 DUF3186: Protein of u 51.6 30 0.00065 33.7 5.4 24 257-280 34-57 (308)
425 TIGR00998 8a0101 efflux pump m 51.5 1.1E+02 0.0023 29.1 9.0 10 225-234 70-79 (334)
426 PF09325 Vps5: Vps5 C terminal 51.1 1.7E+02 0.0037 26.3 9.9 78 236-313 116-193 (236)
427 KOG1318 Helix loop helix trans 51.1 82 0.0018 32.5 8.6 77 232-308 227-322 (411)
428 KOG2189 Vacuolar H+-ATPase V0 51.0 1.3E+02 0.0029 33.5 10.5 38 274-311 97-134 (829)
429 PF14817 HAUS5: HAUS augmin-li 50.9 3.1E+02 0.0067 29.9 13.2 53 258-310 82-134 (632)
430 TIGR03185 DNA_S_dndD DNA sulfu 50.7 2.8E+02 0.006 29.7 12.8 8 39-46 67-74 (650)
431 PF01486 K-box: K-box region; 50.7 82 0.0018 25.4 7.0 22 257-278 77-98 (100)
432 TIGR01461 greB transcription e 50.5 41 0.00089 29.7 5.7 52 257-308 10-70 (156)
433 PHA03011 hypothetical protein; 50.4 1.2E+02 0.0026 26.0 8.0 49 256-304 65-113 (120)
434 KOG2391 Vacuolar sorting prote 50.4 97 0.0021 31.5 8.7 44 258-301 235-278 (365)
435 PF05008 V-SNARE: Vesicle tran 50.2 1E+02 0.0022 23.4 7.2 21 293-313 57-77 (79)
436 PRK03992 proteasome-activating 50.2 64 0.0014 32.2 7.6 20 261-280 14-33 (389)
437 TIGR03007 pepcterm_ChnLen poly 50.1 1.5E+02 0.0032 30.1 10.3 10 81-90 119-128 (498)
438 PF06008 Laminin_I: Laminin Do 50.0 1.3E+02 0.0028 28.2 9.3 64 254-317 44-107 (264)
439 KOG4674 Uncharacterized conser 49.9 1.1E+02 0.0025 37.0 10.4 62 248-309 1236-1297(1822)
440 PF09403 FadA: Adhesion protei 49.8 1.4E+02 0.0031 25.9 8.7 16 260-275 25-40 (126)
441 PRK11546 zraP zinc resistance 49.8 1.8E+02 0.004 25.9 9.5 18 238-255 53-70 (143)
442 PRK10920 putative uroporphyrin 49.5 1.3E+02 0.0029 30.7 9.8 26 263-288 100-125 (390)
443 COG4985 ABC-type phosphate tra 49.5 2.5E+02 0.0054 27.4 10.9 28 287-314 218-245 (289)
444 PF15254 CCDC14: Coiled-coil d 49.4 68 0.0015 35.7 8.0 52 262-313 427-478 (861)
445 KOG0612 Rho-associated, coiled 49.4 1.9E+02 0.0041 34.0 11.6 18 32-49 260-277 (1317)
446 PF06698 DUF1192: Protein of u 49.3 61 0.0013 24.8 5.6 24 257-280 23-46 (59)
447 PF14362 DUF4407: Domain of un 49.3 2.4E+02 0.0052 26.8 12.5 31 254-284 134-164 (301)
448 PRK09413 IS2 repressor TnpA; R 49.2 44 0.00095 27.9 5.4 20 286-305 88-107 (121)
449 PRK10722 hypothetical protein; 49.0 1.3E+02 0.0027 29.2 8.9 57 232-290 142-204 (247)
450 PRK10929 putative mechanosensi 48.9 2.5E+02 0.0055 32.6 12.7 49 266-314 262-310 (1109)
451 PF03234 CDC37_N: Cdc37 N term 48.8 1.4E+02 0.003 27.4 8.9 29 254-282 45-73 (177)
452 PF04375 HemX: HemX; InterPro 48.6 1.2E+02 0.0027 30.2 9.3 29 260-288 91-119 (372)
453 TIGR00219 mreC rod shape-deter 48.3 94 0.002 30.0 8.2 39 271-309 68-110 (283)
454 PF13874 Nup54: Nucleoporin co 48.3 85 0.0019 27.1 7.2 51 255-305 51-101 (141)
455 COG2900 SlyX Uncharacterized p 48.3 1.4E+02 0.003 23.9 7.6 48 255-302 8-55 (72)
456 KOG0976 Rho/Rac1-interacting s 48.1 1E+02 0.0023 34.8 9.1 62 254-315 105-166 (1265)
457 PRK11281 hypothetical protein; 48.1 2.2E+02 0.0048 33.0 12.1 83 233-315 159-252 (1113)
458 PHA02675 ORF104 fusion protein 48.0 1.3E+02 0.0029 24.7 7.7 20 287-306 62-81 (90)
459 PF12761 End3: Actin cytoskele 47.8 2.1E+02 0.0046 26.8 10.0 22 293-314 163-184 (195)
460 PRK13182 racA polar chromosome 47.6 1.6E+02 0.0035 26.8 9.1 25 289-313 124-148 (175)
461 PF12795 MscS_porin: Mechanose 47.6 1.4E+02 0.003 27.7 9.0 79 236-314 87-174 (240)
462 PF00435 Spectrin: Spectrin re 47.5 1.1E+02 0.0025 22.6 9.8 15 253-267 53-67 (105)
463 PF04420 CHD5: CHD5-like prote 47.4 87 0.0019 27.7 7.2 49 258-306 43-96 (161)
464 KOG1850 Myosin-like coiled-coi 47.3 1.3E+02 0.0029 30.4 9.1 53 262-314 257-309 (391)
465 PF13118 DUF3972: Protein of u 47.3 85 0.0019 27.5 6.9 45 256-300 79-123 (126)
466 PF06210 DUF1003: Protein of u 47.1 1.4E+02 0.0029 25.2 7.9 50 239-293 55-104 (108)
467 PF10359 Fmp27_WPPW: RNA pol I 47.1 65 0.0014 33.3 7.3 13 235-247 163-175 (475)
468 PF15369 KIAA1328: Uncharacter 46.9 3.1E+02 0.0068 27.6 11.6 77 230-308 4-86 (328)
469 PF03449 GreA_GreB_N: Transcri 46.9 88 0.0019 24.5 6.4 51 257-307 11-70 (74)
470 PRK14872 rod shape-determining 46.8 58 0.0012 32.7 6.6 29 283-311 57-85 (337)
471 PF07767 Nop53: Nop53 (60S rib 46.7 1E+02 0.0023 30.7 8.5 37 230-266 272-308 (387)
472 TIGR00998 8a0101 efflux pump m 46.6 1.8E+02 0.0039 27.5 9.7 13 257-269 110-122 (334)
473 PF08232 Striatin: Striatin fa 46.4 1.9E+02 0.0042 24.9 9.8 42 259-300 29-70 (134)
474 PRK10920 putative uroporphyrin 46.4 2.1E+02 0.0045 29.3 10.6 55 254-308 66-124 (390)
475 KOG3096 Spliceosome-associated 46.4 2.1E+02 0.0045 27.3 9.7 34 277-310 171-204 (225)
476 COG5185 HEC1 Protein involved 46.3 1E+02 0.0022 32.9 8.3 55 254-308 486-544 (622)
477 PF09486 HrpB7: Bacterial type 46.3 1.5E+02 0.0033 26.6 8.6 19 296-314 78-96 (158)
478 PF07798 DUF1640: Protein of u 46.2 2.1E+02 0.0046 25.5 9.6 63 253-315 71-138 (177)
479 KOG0483 Transcription factor H 46.0 33 0.00071 31.9 4.5 53 263-315 99-151 (198)
480 KOG0964 Structural maintenance 46.0 2.3E+02 0.0051 32.7 11.5 77 233-309 396-472 (1200)
481 PF09763 Sec3_C: Exocyst compl 46.0 91 0.002 33.5 8.4 64 254-317 36-99 (701)
482 PRK10132 hypothetical protein; 45.9 95 0.0021 26.2 6.9 63 253-315 3-70 (108)
483 PF15233 SYCE1: Synaptonemal c 45.9 1.9E+02 0.004 25.7 8.8 59 256-314 7-65 (134)
484 PRK03992 proteasome-activating 45.9 68 0.0015 32.0 7.0 43 254-296 7-49 (389)
485 TIGR02132 phaR_Bmeg polyhydrox 45.8 1.5E+02 0.0032 27.6 8.5 61 255-315 79-139 (189)
486 KOG0996 Structural maintenance 45.8 2.9E+02 0.0062 32.5 12.3 85 233-317 513-597 (1293)
487 PF09766 FimP: Fms-interacting 45.7 1.4E+02 0.003 29.8 9.1 59 254-316 90-148 (355)
488 PF04728 LPP: Lipoprotein leuc 45.7 1.3E+02 0.0029 22.8 7.9 46 261-306 2-47 (56)
489 COG0172 SerS Seryl-tRNA synthe 45.7 95 0.0021 32.2 8.1 90 228-317 2-95 (429)
490 COG3599 DivIVA Cell division i 45.6 1.5E+02 0.0032 27.9 8.7 63 255-317 30-98 (212)
491 PRK09174 F0F1 ATP synthase sub 45.6 2.5E+02 0.0054 25.9 12.5 78 233-315 83-160 (204)
492 KOG1853 LIS1-interacting prote 45.5 2.6E+02 0.0056 27.7 10.5 76 239-314 75-150 (333)
493 PF15254 CCDC14: Coiled-coil d 45.4 2.3E+02 0.0051 31.8 11.2 80 231-316 469-548 (861)
494 KOG2185 Predicted RNA-processi 45.3 1E+02 0.0022 32.2 8.1 77 238-315 397-476 (486)
495 PF06008 Laminin_I: Laminin Do 45.1 2.7E+02 0.0058 26.1 11.8 85 234-318 31-115 (264)
496 PF10482 CtIP_N: Tumour-suppre 44.9 96 0.0021 26.9 6.7 54 261-314 13-66 (120)
497 PRK10361 DNA recombination pro 44.8 4E+02 0.0087 28.1 12.9 81 232-315 33-113 (475)
498 PF08700 Vps51: Vps51/Vps67; 44.8 1.4E+02 0.003 22.8 8.6 65 253-317 17-85 (87)
499 PF09755 DUF2046: Uncharacteri 44.7 45 0.00097 33.2 5.4 38 279-316 23-60 (310)
500 KOG0239 Kinesin (KAR3 subfamil 44.7 2.5E+02 0.0054 30.7 11.4 83 233-315 208-294 (670)
No 1
>smart00338 BRLZ basic region leucin zipper.
Probab=99.35 E-value=6.2e-12 Score=94.84 Aligned_cols=61 Identities=41% Similarity=0.566 Sum_probs=54.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 232 DDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNN 292 (318)
Q Consensus 232 e~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN 292 (318)
++|+.||+++||+||++||.||++|+.+||.+|..|+.+|..|..++..|..++..+..+|
T Consensus 3 ~~k~~rR~~rNR~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 3 DEKRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred cHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5799999999999999999999999999999999999999999999988766666655544
No 2
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=99.33 E-value=8.8e-12 Score=93.86 Aligned_cols=61 Identities=39% Similarity=0.571 Sum_probs=56.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 232 DDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNN 292 (318)
Q Consensus 232 e~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN 292 (318)
+.|+.+|+++||+||+++|.||++|+.+|+.+|..|..+|..|..++..|..++..|..+|
T Consensus 3 ~~k~~~rr~rNR~AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 3 EDKRERRRERNREAARRSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5789999999999999999999999999999999999999999999999888888888776
No 3
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=99.29 E-value=2.5e-11 Score=113.48 Aligned_cols=81 Identities=27% Similarity=0.370 Sum_probs=77.1
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 231 VDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFI 310 (318)
Q Consensus 231 ~e~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e 310 (318)
-|+|-+||+|+||.+|+.+|.|||++++++|.+|..|..||+.|..++..|+.+.+.|.++|.+|..+++.|+..|..+.
T Consensus 66 ~EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~~ 145 (292)
T KOG4005|consen 66 WEEKVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAELK 145 (292)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhH
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999887765
Q ss_pred H
Q 021065 311 E 311 (318)
Q Consensus 311 ~ 311 (318)
+
T Consensus 146 ~ 146 (292)
T KOG4005|consen 146 Q 146 (292)
T ss_pred H
Confidence 4
No 4
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=99.25 E-value=1.1e-11 Score=125.93 Aligned_cols=70 Identities=36% Similarity=0.424 Sum_probs=67.3
Q ss_pred cCCchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 227 GLDSVDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILK 296 (318)
Q Consensus 227 ~~d~~e~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lr 296 (318)
.+|++-.||+.|||+|||||..||+|||+|+..||.+++.|..||+.|++++..|++++..+..||.+||
T Consensus 274 ~~d~kv~krqQRmIKNResA~~SRkKKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En~~~k 343 (655)
T KOG4343|consen 274 GSDIKVLKRQQRMIKNRESACQSRKKKKEYMLGLEARLQALLSENEQLKKENATLKRQLDELVSENQRLK 343 (655)
T ss_pred ccCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCcccc
Confidence 4678889999999999999999999999999999999999999999999999999999999999999985
No 5
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=99.04 E-value=2.9e-10 Score=114.23 Aligned_cols=73 Identities=30% Similarity=0.428 Sum_probs=66.7
Q ss_pred chHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 230 SVDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMF 309 (318)
Q Consensus 230 ~~e~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~ 309 (318)
++..||.||||+|.+||+.||+|||.|++.||.+|.....||++|.+++.. |+.+|+.|-+++..|++.+.+-
T Consensus 247 EriLKrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~-------Le~~N~sLl~qL~klQt~v~q~ 319 (472)
T KOG0709|consen 247 ERILKRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVEE-------LELSNRSLLAQLKKLQTLVIQV 319 (472)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHH-------HhhccHHHHHHHHHHHHHHhhc
Confidence 457899999999999999999999999999999999999999999888765 8889999999999999888764
No 6
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=99.03 E-value=1.8e-09 Score=79.13 Aligned_cols=51 Identities=39% Similarity=0.629 Sum_probs=47.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 232 DDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQ 283 (318)
Q Consensus 232 e~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~q 283 (318)
+.++.||+ +||++|++||.||++|+.+|+.+|..|+.+|..|..++..|..
T Consensus 3 ~~~~~rR~-rNr~AA~r~R~rkk~~~~~le~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 3 EEKRERRE-RNREAARRSRQRKKQREEELEQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56788888 9999999999999999999999999999999999998887754
No 7
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=99.00 E-value=6.6e-10 Score=106.37 Aligned_cols=60 Identities=28% Similarity=0.491 Sum_probs=54.3
Q ss_pred CCchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 228 LDSVDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDE 287 (318)
Q Consensus 228 ~d~~e~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~ 287 (318)
.++.-.||+-|++||||+||.+|+|||+|++.||.+|..|+.+|..|-++|..|+.-|..
T Consensus 285 aee~trKRevRLmKNREAARECRRKKKEYVKCLENRVAVLENQNKaLIEELKtLKeLYc~ 344 (348)
T KOG3584|consen 285 AEEATRKREVRLMKNREAARECRRKKKEYVKCLENRVAVLENQNKALIEELKTLKELYCH 344 (348)
T ss_pred chhhhhHHHHHHHhhHHHHHHHHHhHhHHHHHHHhHHHHHhcccHHHHHHHHHHHHHhhc
Confidence 345568999999999999999999999999999999999999999999999998876653
No 8
>PF03131 bZIP_Maf: bZIP Maf transcription factor; InterPro: IPR004826 There are several different types of Maf transcription factors with different roles in the cell. MafG and MafH are small Mafs which lack a putative transactivation domain. They behave as transcriptional repressors when they dimerize among themselves. However they also serve as transcriptional activators by dimerizing with other (usually larger) basic-zipper proteins and recruiting them to specific DNA-binding sites. Maf transcription factors contain a conserved basic region leucine zipper (bZIP) domain, which mediates their dimerization and DNA binding property. Neural retina-specific leucine zipper proteins also belong to this family. Together with the basic region, the Maf extended homology region (EHR), conserved only within the Maf family, defines the DNA binding specific to Mafs. This structure enables Mafs to make a broader area of contact with DNA and to recognise longer DNA sequences. In particular, the two residues at the beginning of helix H2 are positioned to recognise the flanking region []. Small Maf proteins heterodimerize with Fos and may act as competitive repressors of the NF2-E2 transcription factor. In mouse, Maf1 may play an early role in axial patterning. Defects in these proteins are a cause of autosomal dominant retinitis pigmentosa. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2KZ5_A 3A5T_A 1K1V_A 1SKN_P 2WT7_B 2WTY_B.
Probab=98.11 E-value=4.9e-08 Score=78.76 Aligned_cols=58 Identities=38% Similarity=0.512 Sum_probs=48.5
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 231 VDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDES 288 (318)
Q Consensus 231 ~e~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l 288 (318)
.+.|..||.++||.+|+.||.||..++.+|+.++..|+.+...|..++..+..++..+
T Consensus 27 ~~lK~~RRr~KNR~~A~~cR~rk~~~~~~Le~e~~~l~~~~~~L~~e~~~l~~e~~~l 84 (92)
T PF03131_consen 27 AELKQRRRRLKNRGYAQNCRKRKLDQIEELEEEIEQLRQEIEQLQQELSELRQERDEL 84 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4679999999999999999999999999999999988888777777766655554443
No 9
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=98.04 E-value=1.9e-05 Score=75.12 Aligned_cols=52 Identities=29% Similarity=0.448 Sum_probs=43.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 233 DKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQK 284 (318)
Q Consensus 233 ~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk 284 (318)
.|-.|..++||++|.+||.||.+||..||.+|..|..+|..|-..+..|+.+
T Consensus 205 ~kleRkrlrnreaa~Kcr~rkLdrisrLEdkv~~lk~~n~~L~~~l~~l~~~ 256 (279)
T KOG0837|consen 205 IKLERKRLRNREAASKCRKRKLDRISRLEDKVKTLKIYNRDLASELSKLKEQ 256 (279)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHH
Confidence 3444457999999999999999999999999999999999888777664433
No 10
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=97.52 E-value=0.0014 Score=63.37 Aligned_cols=65 Identities=25% Similarity=0.289 Sum_probs=47.8
Q ss_pred HHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 232 DDKRARR-MLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR 303 (318)
Q Consensus 232 e~KR~RR-~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr 303 (318)
..|+.|| .+.|..+|-|.|+||++..++|+.++..|+.+|.+|+.++..| +.|-+.||+=+.+..
T Consensus 224 ~~~~~~rkr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~l-------erEI~ylKqli~e~~ 289 (294)
T KOG4571|consen 224 PEKKLRRKRQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQASEL-------EREIRYLKQLILEVY 289 (294)
T ss_pred chHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 3444444 4566667999999999999999999999999999998888764 444444555444433
No 11
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=97.29 E-value=0.0024 Score=55.53 Aligned_cols=66 Identities=23% Similarity=0.336 Sum_probs=45.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 232 DDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIE 311 (318)
Q Consensus 232 e~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~ 311 (318)
-.|..||-|+||=.|+-+|-|+-.+-.+||.+...|..+... |..||..++.++..|+.|+..|-.
T Consensus 51 rlKQrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~qqv~~--------------L~~e~s~~~~E~da~k~k~e~l~~ 116 (135)
T KOG4196|consen 51 RLKQRRRTLKNRGYAQSCRVKRVQQKHELEKEKAELQQQVEK--------------LKEENSRLRRELDAYKSKYEALQN 116 (135)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 468888999999999999999988777776665554444433 344455555566666666655544
No 12
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=96.93 E-value=0.0091 Score=46.87 Aligned_cols=63 Identities=21% Similarity=0.157 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 021065 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFLGEN 317 (318)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~~~ 317 (318)
.-++.||.+|..+-..+..|..++..|+.+...+..+|..|+.+...|+..-....+.|..+.
T Consensus 4 E~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL 66 (72)
T PF06005_consen 4 ELLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLL 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357788888888888888888888888888777777777777777777777777777666554
No 13
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=96.82 E-value=0.0054 Score=58.56 Aligned_cols=49 Identities=20% Similarity=0.401 Sum_probs=40.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 238 RMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYD 286 (318)
Q Consensus 238 R~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~ 286 (318)
|.-+|=+++||||.+.|....++..+|..|+.||..|+.++..|++++.
T Consensus 198 rr~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~ 246 (269)
T KOG3119|consen 198 RRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELA 246 (269)
T ss_pred HHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3346889999999999999999999999999999998888877544443
No 14
>KOG3863 consensus bZIP transcription factor NRF1 [Transcription]
Probab=96.38 E-value=0.0068 Score=63.79 Aligned_cols=65 Identities=23% Similarity=0.340 Sum_probs=51.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 235 RARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKL 306 (318)
Q Consensus 235 R~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl 306 (318)
=.||.=|||.+|+++|+||..-|..||..|..|+.|-.+|.++-.. +...=.+++.++..|-..|
T Consensus 491 DIRRRgKNkvAAQnCRKRKLd~I~nLE~ev~~l~~eKeqLl~Er~~-------~d~~L~~~kqqls~L~~~V 555 (604)
T KOG3863|consen 491 DIRRRGKNKVAAQNCRKRKLDCILNLEDEVEKLQKEKEQLLRERDE-------LDSTLGVMKQQLSELYQEV 555 (604)
T ss_pred ccccccccchhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 3567889999999999999999999999999999999888766543 4444455666666665543
No 15
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=96.04 E-value=0.08 Score=41.06 Aligned_cols=53 Identities=17% Similarity=0.049 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMF 309 (318)
Q Consensus 257 l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~ 309 (318)
+..|+.+|..|-.....|+.++..|.++...+..|++.|..+++.=|.||..+
T Consensus 2 L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEam 54 (65)
T TIGR02449 2 LQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAM 54 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777776666666666666666666667777777766666666665443
No 16
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=95.96 E-value=0.051 Score=45.62 Aligned_cols=53 Identities=26% Similarity=0.340 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 259 ELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIE 311 (318)
Q Consensus 259 eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~ 311 (318)
+|=.++..|+.....|..++..|+.++..+..||..|+.+...||.+|...+.
T Consensus 5 ~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 5 ELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455556666666666666666666777777777777777777777777654
No 17
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=95.77 E-value=0.16 Score=53.39 Aligned_cols=84 Identities=15% Similarity=0.190 Sum_probs=71.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021065 234 KRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIF 313 (318)
Q Consensus 234 KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v 313 (318)
|....+++...........-+.++..|+.++...+.++..|..+...+......+..|+..|+.+...++.+|..+|+.|
T Consensus 150 kE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi 229 (546)
T PF07888_consen 150 KEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRIRELEEDI 229 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445666667777777777788888888888889999999999999999999999999999999999999999999988
Q ss_pred hhcc
Q 021065 314 LGEN 317 (318)
Q Consensus 314 ~~~~ 317 (318)
+.++
T Consensus 230 ~~l~ 233 (546)
T PF07888_consen 230 KTLT 233 (546)
T ss_pred HHHH
Confidence 8764
No 18
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=95.71 E-value=0.085 Score=47.45 Aligned_cols=60 Identities=18% Similarity=0.264 Sum_probs=47.3
Q ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 021065 256 HLNELET---QAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFLG 315 (318)
Q Consensus 256 ~l~eLE~---qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~ 315 (318)
+|..|.. ....++.||..|..++..|++++..|..||..|..++..+.....++=.++.|
T Consensus 88 fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~R 150 (161)
T TIGR02894 88 FLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDR 150 (161)
T ss_pred HHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444443 46778888999999999999999999999999988888888888777777655
No 19
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=95.64 E-value=0.12 Score=40.18 Aligned_cols=57 Identities=14% Similarity=0.158 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIE 311 (318)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~ 311 (318)
+.++.|-.....|+.||..|+.++..+..+-..+...|..=+.+|+.|=.+|+.+|.
T Consensus 7 ~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~leq 63 (65)
T TIGR02449 7 AQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKALEQ 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 467888899999999999999999999999999999999999999999999998874
No 20
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=95.64 E-value=0.038 Score=39.79 Aligned_cols=42 Identities=26% Similarity=0.436 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 266 QLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLY 307 (318)
Q Consensus 266 ~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~ 307 (318)
+|+.+...|+.....|...|..|..||..|++++..|..++.
T Consensus 2 QlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl~ 43 (45)
T PF02183_consen 2 QLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKLQ 43 (45)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 567777788888888888888888888888888888887764
No 21
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.44 E-value=0.12 Score=40.93 Aligned_cols=54 Identities=15% Similarity=0.274 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMF 309 (318)
Q Consensus 256 ~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~ 309 (318)
-+.=|.-+|+.|+.+|..|..+...+++....|..+|..|+.+-...+.+|+.+
T Consensus 19 TI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsL 72 (79)
T COG3074 19 TITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRAL 72 (79)
T ss_pred HHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677788999999999999999999999999999999999988888777654
No 22
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=95.42 E-value=0.14 Score=40.40 Aligned_cols=59 Identities=24% Similarity=0.269 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 021065 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYD--------ESAVNNRILKADIETLRAKLYMFIEIFLG 315 (318)
Q Consensus 257 l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~--------~l~~EN~~Lrael~~Lr~kl~~~e~~v~~ 315 (318)
|.+.+.+++.|+.||=.|+-++-.|.+++. .+..+|..|+.++..|+..|......|..
T Consensus 2 lrEqe~~i~~L~KENF~LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~L~~el~~~~~~l~~ 68 (75)
T PF07989_consen 2 LREQEEQIDKLKKENFNLKLRIYFLEERLQKLGPESIEELLKENIELKVEVESLKRELQEKKKLLKE 68 (75)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567899999999999999999988888866 45788888888888888888888877764
No 23
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=95.39 E-value=0.11 Score=43.95 Aligned_cols=50 Identities=22% Similarity=0.284 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 260 LETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMF 309 (318)
Q Consensus 260 LE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~ 309 (318)
|=.++..|+.....|..++..|++.+..+..||..|+.+...||.+|..+
T Consensus 6 lfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 6 IFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33445555555555555555555555566666666666666666666654
No 24
>PRK10884 SH3 domain-containing protein; Provisional
Probab=95.35 E-value=0.18 Score=46.69 Aligned_cols=17 Identities=0% Similarity=-0.017 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 021065 287 ESAVNNRILKADIETLR 303 (318)
Q Consensus 287 ~l~~EN~~Lrael~~Lr 303 (318)
.+..+|+.|++++..++
T Consensus 150 ~~~~~~~~l~~~~~~~~ 166 (206)
T PRK10884 150 VAQKKVDAANLQLDDKQ 166 (206)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 25
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=95.33 E-value=0.22 Score=39.16 Aligned_cols=55 Identities=15% Similarity=0.244 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFI 310 (318)
Q Consensus 256 ~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e 310 (318)
.+..+-..+..|+.||..|+.++..|......|..+|..|+.+-.....+|..+=
T Consensus 12 ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL 66 (72)
T PF06005_consen 12 KIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLL 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666778888888888888888888888899999999999888888887653
No 26
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=95.16 E-value=0.11 Score=43.52 Aligned_cols=50 Identities=30% Similarity=0.414 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (318)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~ 304 (318)
..+..||.++..|-.+...|+.++..|.++...|..||..||..+..+..
T Consensus 8 ~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 8 DRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56889999999999999999999999999999999999999999998876
No 27
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=95.04 E-value=0.13 Score=43.60 Aligned_cols=50 Identities=28% Similarity=0.383 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (318)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~ 304 (318)
..+..||.++..|-.+...|+..+..|.++...|..||..||..+..+..
T Consensus 8 d~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~~~ 57 (110)
T PRK13169 8 DALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEELEA 57 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 46889999999999999999999999999999999999999999998843
No 28
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=95.02 E-value=0.27 Score=38.27 Aligned_cols=56 Identities=20% Similarity=0.271 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 254 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMF 309 (318)
Q Consensus 254 k~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~ 309 (318)
+.+++.+..++...+.+|..|..+-.....++..+-.+|..|+.+++.|+..+...
T Consensus 11 r~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~ 66 (69)
T PF14197_consen 11 RNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEEL 66 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35678888888888888888888888888888888889999999999998886654
No 29
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=94.63 E-value=0.14 Score=43.56 Aligned_cols=49 Identities=24% Similarity=0.276 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 260 LETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYM 308 (318)
Q Consensus 260 LE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~ 308 (318)
+=.+|..|+...-.|.+++..|++++..+..||..|+-+...||.+|..
T Consensus 6 iFd~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 6 IFDQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 4456777777777788888888888889999999999999999999887
No 30
>PRK10884 SH3 domain-containing protein; Provisional
Probab=94.56 E-value=0.74 Score=42.71 Aligned_cols=37 Identities=11% Similarity=0.085 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 274 LLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFI 310 (318)
Q Consensus 274 L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e 310 (318)
|..++....+++..|..+|..|+.++..++.++..++
T Consensus 123 l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~ 159 (206)
T PRK10884 123 MQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAAN 159 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444445555555555544444444433
No 31
>PRK11637 AmiB activator; Provisional
Probab=94.52 E-value=0.75 Score=46.11 Aligned_cols=65 Identities=15% Similarity=0.130 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 021065 251 RRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFLG 315 (318)
Q Consensus 251 ~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~ 315 (318)
...+..+.+++.++..|..+...+..++..+++++..+..+=..|..++..++.+|..+++.+++
T Consensus 64 ~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~ 128 (428)
T PRK11637 64 RQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAA 128 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555666666666666666666666666666666666666677777777776666666543
No 32
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=94.49 E-value=0.39 Score=38.66 Aligned_cols=48 Identities=17% Similarity=0.276 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 261 ETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYM 308 (318)
Q Consensus 261 E~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~ 308 (318)
.-+|+.|+.+|..|..++..+......|..+|..||.+-.....+|..
T Consensus 24 qmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~ 71 (79)
T PRK15422 24 QMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQA 71 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444455666666666666665555543
No 33
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=94.33 E-value=0.11 Score=53.68 Aligned_cols=51 Identities=20% Similarity=0.270 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (318)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~k 305 (318)
..+.+||.+++.|+.|.+.|.+++..+++++..++.||..|+.+++.+..+
T Consensus 76 ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~~~~ 126 (475)
T PRK13729 76 VTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKALGAN 126 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 467899999999999999999999999999999999999999999665543
No 34
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=94.28 E-value=0.66 Score=40.02 Aligned_cols=78 Identities=17% Similarity=0.275 Sum_probs=42.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 234 KRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIE 311 (318)
Q Consensus 234 KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~ 311 (318)
....|=...|+..-....++...+..|+..+..|+.++..+..++..+..+...+..+++.+...+..++..+..+..
T Consensus 45 ~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~ 122 (151)
T PF11559_consen 45 QQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKN 122 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455666666666666666666666666666666666666555555555555555544444444444444433
No 35
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=94.03 E-value=1.9 Score=37.23 Aligned_cols=82 Identities=18% Similarity=0.247 Sum_probs=39.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021065 235 RARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFL 314 (318)
Q Consensus 235 R~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~ 314 (318)
-.-.+|.-|.--...|.-=...+..|+..+..|...+..|..++..+.+++..+..+-+.|+.++..+..+++...+-|+
T Consensus 39 ~i~~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~ 118 (151)
T PF11559_consen 39 CIYDLLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQ 118 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455554433333333333333344444444444444444444444444555555555555555555555555555555
Q ss_pred hc
Q 021065 315 GE 316 (318)
Q Consensus 315 ~~ 316 (318)
++
T Consensus 119 kl 120 (151)
T PF11559_consen 119 KL 120 (151)
T ss_pred HH
Confidence 43
No 36
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=94.03 E-value=0.38 Score=43.45 Aligned_cols=72 Identities=15% Similarity=0.129 Sum_probs=50.4
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 231 VDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETL 302 (318)
Q Consensus 231 ~e~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~L 302 (318)
...++.+.+...+..-+.-.......+.+++.-+..|..|...|.-++..+..++..+..||+.|-.+.+..
T Consensus 113 ~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~~ 184 (194)
T PF08614_consen 113 EKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWMQR 184 (194)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555556565555555566666777777777778888888888888888888888888888886665443
No 37
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=93.78 E-value=0.52 Score=37.96 Aligned_cols=63 Identities=14% Similarity=0.154 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhhhhccC
Q 021065 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVN-------NRILKADIETLRAKLYMFIEIFLGENG 318 (318)
Q Consensus 256 ~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~E-------N~~Lrael~~Lr~kl~~~e~~v~~~~~ 318 (318)
-++.||.+|.+.-..+.-|.-++.+|+.+...+..+ ...|..+...|+..-..-.+.+..+.|
T Consensus 5 vleqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLG 74 (79)
T PRK15422 5 VFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLG 74 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788887765555555555555555555555555 455888888888888888888877765
No 38
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=93.41 E-value=1.2 Score=34.91 Aligned_cols=60 Identities=12% Similarity=0.224 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 021065 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFLGEN 317 (318)
Q Consensus 258 ~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~~~ 317 (318)
..||.-=......-+.....+..|+..+.....+|..|++++..|..+|..+.+-|.|++
T Consensus 10 ~ale~Lq~~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql~rLs 69 (70)
T PF04899_consen 10 SALEELQQSYEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQLERLS 69 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 334443444555566677788888888888999999999999999999999999998875
No 39
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=93.24 E-value=2.1 Score=38.61 Aligned_cols=60 Identities=27% Similarity=0.403 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 021065 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFLG 315 (318)
Q Consensus 256 ~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~ 315 (318)
.+...+.++..|+.++..|..++..+...+.....-|..|+.++..|+-.+.++|+-+.+
T Consensus 110 ~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~ 169 (194)
T PF08614_consen 110 ELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRK 169 (194)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555555555555555555555666666665555555555443
No 40
>PRK11637 AmiB activator; Provisional
Probab=93.10 E-value=1.4 Score=44.14 Aligned_cols=61 Identities=18% Similarity=0.145 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 248 RSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYM 308 (318)
Q Consensus 248 RSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~ 308 (318)
.....-...+..|+.++..++.+...+..++..+..++..+..+=..|+.++..++..+..
T Consensus 68 ~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~ 128 (428)
T PRK11637 68 QQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAA 128 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444556666666666666666666666666666666666666666665555555543
No 41
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=92.88 E-value=3.6 Score=36.38 Aligned_cols=73 Identities=19% Similarity=0.252 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 021065 244 ESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFLGE 316 (318)
Q Consensus 244 ESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~~ 316 (318)
...+.-++.++..+..++..+..+..+-..|...+.+.+.+...+..+-..++.....|..++...+++.+++
T Consensus 119 ~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~ 191 (191)
T PF04156_consen 119 QELRELLKSVEERLDSLDESIKELEKEIRELQKELQDSREEVQELRSQLERLQENLQQLEEKIQELQELLEQL 191 (191)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3333444555566666666666666666666666666667777777777777777777777777777776653
No 42
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=92.53 E-value=1.6 Score=40.88 Aligned_cols=42 Identities=14% Similarity=0.156 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 254 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRIL 295 (318)
Q Consensus 254 k~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~L 295 (318)
++.+..|+.+++.|+..|..|...+...++++..+..+-..+
T Consensus 55 ~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~ 96 (251)
T PF11932_consen 55 LAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQI 96 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555555555444444444444444433333
No 43
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.49 E-value=1.1 Score=43.31 Aligned_cols=64 Identities=22% Similarity=0.318 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021065 251 RRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFL 314 (318)
Q Consensus 251 ~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~ 314 (318)
..+...+.+++..+..++.+...|..++..+..+...+..++..+++++..|..+|..+++.|.
T Consensus 34 ~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~ 97 (265)
T COG3883 34 QNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIV 97 (265)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677888888888888888888888888888888888888888888888888887777664
No 44
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=92.42 E-value=0.55 Score=33.78 Aligned_cols=42 Identities=24% Similarity=0.293 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021065 273 SLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFL 314 (318)
Q Consensus 273 ~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~ 314 (318)
+|......|+..|..|..+|..|+.+...|++.|..+...+.
T Consensus 2 QlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl~ 43 (45)
T PF02183_consen 2 QLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKLQ 43 (45)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 466778899999999999999999999999999998877654
No 45
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=92.25 E-value=3.1 Score=39.68 Aligned_cols=82 Identities=20% Similarity=0.274 Sum_probs=55.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHH
Q 021065 233 DKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQK---------YDESAVNNRILKADIETLR 303 (318)
Q Consensus 233 ~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk---------~~~l~~EN~~Lrael~~Lr 303 (318)
.+-.+++..-.+.+++.=.-++..+++|+.+|..++.+.+.++.++..+..+ |..|..|-..++.+...|+
T Consensus 30 ~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~le 109 (239)
T COG1579 30 RKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLE 109 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666677777777778888999999999999999888888877655 3444444445555555555
Q ss_pred HHHHHHHHhhh
Q 021065 304 AKLYMFIEIFL 314 (318)
Q Consensus 304 ~kl~~~e~~v~ 314 (318)
..|..+.+.+.
T Consensus 110 ~el~~l~~~~~ 120 (239)
T COG1579 110 DELAELMEEIE 120 (239)
T ss_pred HHHHHHHHHHH
Confidence 55555544443
No 46
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=92.20 E-value=0.49 Score=39.38 Aligned_cols=42 Identities=17% Similarity=0.085 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 021065 274 LLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFLG 315 (318)
Q Consensus 274 L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~ 315 (318)
|..++..+++++..+..+|..|+.++..|+.--..+|+..+.
T Consensus 32 l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiEe~AR~ 73 (105)
T PRK00888 32 VNDQVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAIEERARN 73 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHH
Confidence 334444444444444555555555555555544455555443
No 47
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=92.12 E-value=0.71 Score=47.81 Aligned_cols=59 Identities=20% Similarity=0.304 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021065 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDES-AVNNRILKADIETLRAKLYMFIEIFL 314 (318)
Q Consensus 256 ~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l-~~EN~~Lrael~~Lr~kl~~~e~~v~ 314 (318)
.+..|+.+.+.|+.||+.|+++...+.++++.. ..+...|..+.+.|...+..+...+.
T Consensus 74 ~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~ 133 (472)
T TIGR03752 74 RLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLID 133 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788888888888888888888887776644 35555666666665555555544443
No 48
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=91.93 E-value=0.86 Score=45.62 Aligned_cols=63 Identities=17% Similarity=0.202 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 249 SRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIE 311 (318)
Q Consensus 249 SR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~ 311 (318)
-=.|-+.+...||.-+.+++.||+.|.-+|..+.+++.+.+.|+..|..++.+-++....+-+
T Consensus 121 vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~~ 183 (401)
T PF06785_consen 121 VFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQELND 183 (401)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667888899999999999999999999999999999999999997777766665555443
No 49
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=91.92 E-value=0.76 Score=42.77 Aligned_cols=47 Identities=19% Similarity=0.237 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC
Q 021065 268 RAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFLGENG 318 (318)
Q Consensus 268 ~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~~~~ 318 (318)
-.||..|..++..+..++..|..||..|+. |...++.+-++|.+++|
T Consensus 124 L~ENe~Lh~~ie~~~eEi~~lk~en~~L~e----lae~~~~la~~ie~l~~ 170 (200)
T PF07412_consen 124 LEENEKLHKEIEQKDEEIAKLKEENEELKE----LAEHVQYLAEVIERLTG 170 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCHH----HHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhc
Confidence 357888999999888888889999988876 56667777777777775
No 50
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=91.82 E-value=1.8 Score=41.64 Aligned_cols=76 Identities=17% Similarity=0.243 Sum_probs=58.8
Q ss_pred hHHHHHHHHHH-----hHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 231 VDDKRARRMLS-----NRESARRSRRRKQ-AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (318)
Q Consensus 231 ~e~KR~RR~ls-----NRESArRSR~RKk-~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~ 304 (318)
.+.||.|-.+. .|.-| |.-+. ..+.+|+.+-..|+.||..|+.....|--+.+++..+=..|+++++.|..
T Consensus 70 ~~RrKLKNRVAAQtaRDrKKa---Rm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~~~ 146 (292)
T KOG4005|consen 70 VQRRKLKNRVAAQTARDRKKA---RMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAELKQ 146 (292)
T ss_pred HHHHHHHHHHHHhhhhhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHH
Confidence 45666664332 33333 33333 34789999999999999999999999999999999999999999999988
Q ss_pred HHHHH
Q 021065 305 KLYMF 309 (318)
Q Consensus 305 kl~~~ 309 (318)
...+-
T Consensus 147 ~~~~~ 151 (292)
T KOG4005|consen 147 QQQHN 151 (292)
T ss_pred HHHHh
Confidence 77654
No 51
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=91.77 E-value=4.2 Score=37.33 Aligned_cols=84 Identities=15% Similarity=0.129 Sum_probs=48.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Q 021065 232 DDKRARRMLSNRESARRSRRRKQAHLNELETQAGQL-------RAEHSSLLKGLTDVNQKYD-------ESAVNNRILKA 297 (318)
Q Consensus 232 e~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L-------~~EN~~L~~~l~~L~qk~~-------~l~~EN~~Lra 297 (318)
+.+-.+..|.+..+-+..+.+.+.+...|+.++..- +.+...|..++..|+.+.+ ....|...|+.
T Consensus 87 nV~~l~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks 166 (190)
T PF05266_consen 87 NVKFLRSRLNKLLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKS 166 (190)
T ss_pred ccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666667777777777777777777776644 4444444455555544433 33344555555
Q ss_pred HHHHHHHHHHHHHHhhhh
Q 021065 298 DIETLRAKLYMFIEIFLG 315 (318)
Q Consensus 298 el~~Lr~kl~~~e~~v~~ 315 (318)
.+..|...+..+|-.++.
T Consensus 167 ~~~~l~~~~~~~e~~F~~ 184 (190)
T PF05266_consen 167 EAEALKEEIENAELEFQS 184 (190)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555556655555554443
No 52
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=91.63 E-value=1 Score=39.65 Aligned_cols=49 Identities=27% Similarity=0.345 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 255 AHLNELETQAGQLRAEHSSLLKGL--TDVNQKYDESAVNNRILKADIETLR 303 (318)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l--~~L~qk~~~l~~EN~~Lrael~~Lr 303 (318)
..+.+|+.++..|+.|...|...+ .+|..++..+..|+..|..++..|+
T Consensus 86 ~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~ 136 (169)
T PF07106_consen 86 EELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLR 136 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555444 2334444444444444444444444
No 53
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=91.58 E-value=5.8 Score=32.21 Aligned_cols=75 Identities=19% Similarity=0.246 Sum_probs=60.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 232 DDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKL 306 (318)
Q Consensus 232 e~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl 306 (318)
-.+|..+.+.+=+++=..|.-+.....+|+.++..|....+.|-.+|.....++..++.-|+.+...+...-..|
T Consensus 9 al~rL~~aid~LE~~v~~r~~~~~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~e~I 83 (89)
T PF13747_consen 9 ALTRLEAAIDRLEKAVDRRLERDRKRDELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSAIETI 83 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888888888888888888888789999999999999999999998888888887777777666555444433
No 54
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=91.37 E-value=1.4 Score=38.79 Aligned_cols=56 Identities=25% Similarity=0.306 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKY--DESAVNNRILKADIETLRAKLYMFIE 311 (318)
Q Consensus 256 ~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~--~~l~~EN~~Lrael~~Lr~kl~~~e~ 311 (318)
.+.+|..++..|+.++..|..++..|.... ..+..+...|+.++..|..+|..+..
T Consensus 80 ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 80 EIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 367777777777777777777777776653 55666666667777777777666654
No 55
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=91.32 E-value=3.1 Score=32.66 Aligned_cols=63 Identities=19% Similarity=0.225 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 021065 253 KQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFLG 315 (318)
Q Consensus 253 Kk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~ 315 (318)
|.+.+..|-.+-..|....-.+...+..|+.+...++.+...|+.++..+...+..+++..++
T Consensus 10 KDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~~ 72 (74)
T PF12329_consen 10 KDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERLKR 72 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 455666666666666666666666666677777777777777777777777777777666554
No 56
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=91.19 E-value=7.1 Score=34.41 Aligned_cols=66 Identities=17% Similarity=0.184 Sum_probs=32.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 239 MLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIE 311 (318)
Q Consensus 239 ~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~ 311 (318)
...|++.+-+--.-+++.+..|+.++..+..+...|..+|.. +..|+..|...+...+.+|..||.
T Consensus 36 ~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~-------l~sEk~~L~k~lq~~q~kv~eLE~ 101 (140)
T PF10473_consen 36 SQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDT-------LRSEKENLDKELQKKQEKVSELES 101 (140)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555444555555555555555555555444444444 444444444444444444444443
No 57
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=90.97 E-value=2.4 Score=36.33 Aligned_cols=33 Identities=24% Similarity=0.429 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Q 021065 274 LLKGLTDVNQKYDES-------AVNNRILKADIETLRAKL 306 (318)
Q Consensus 274 L~~~l~~L~qk~~~l-------~~EN~~Lrael~~Lr~kl 306 (318)
|..++.+|+.+|..+ .-++.+|+.++..|..-+
T Consensus 73 L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~my 112 (120)
T PF12325_consen 73 LEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLKEMY 112 (120)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 344444444444433 345555555555555433
No 58
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.95 E-value=2.5 Score=33.68 Aligned_cols=62 Identities=19% Similarity=0.230 Sum_probs=36.6
Q ss_pred HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC
Q 021065 257 LNELETQAGQ-------LRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFLGENG 318 (318)
Q Consensus 257 l~eLE~qV~~-------L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~~~~ 318 (318)
++.||.+|.+ |+.|..+|+.++..|.++.+.+...+..|..+.+.|...-..-.+.++.+.|
T Consensus 6 ~ekLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLLG 74 (79)
T COG3074 6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRALLG 74 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556666553 5555555666666565556665666666666666666665555566655544
No 59
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=90.90 E-value=3.7 Score=34.87 Aligned_cols=76 Identities=18% Similarity=0.189 Sum_probs=48.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 234 KRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMF 309 (318)
Q Consensus 234 KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~ 309 (318)
-+..-+..-.|..+-|+..=.+.-++|+..+..|+.+|..+.+++.+|+.++..+...=..-|..-..|+.++...
T Consensus 16 n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~eK~ak~~l~~r~~k~ 91 (107)
T PF09304_consen 16 NRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLEDEKQAKLELESRLLKA 91 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566667777777776666667788888888888887777777777777766544433333333444444433
No 60
>PRK09039 hypothetical protein; Validated
Probab=90.84 E-value=3.1 Score=41.19 Aligned_cols=48 Identities=23% Similarity=0.277 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 262 TQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMF 309 (318)
Q Consensus 262 ~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~ 309 (318)
.+|..|+.+...|+.++..|...+..++.+.+..+.+++.|..+|..+
T Consensus 137 ~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a 184 (343)
T PRK09039 137 AQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVA 184 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555555555555566666665555544
No 61
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=90.83 E-value=2.5 Score=40.52 Aligned_cols=53 Identities=23% Similarity=0.348 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMF 309 (318)
Q Consensus 257 l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~ 309 (318)
++++..+...|..+|..|..++..++.++..+..||..|......|-.++..+
T Consensus 144 l~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L 196 (290)
T COG4026 144 LEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDL 196 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHH
Confidence 44444445555555555555555566666666666666655444443333333
No 62
>PRK04406 hypothetical protein; Provisional
Probab=90.80 E-value=2.2 Score=33.73 Aligned_cols=53 Identities=9% Similarity=0.149 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 259 ELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIE 311 (318)
Q Consensus 259 eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~ 311 (318)
.|+.++..|+...+-+-..+..|+.-+.....+-..|+.++..|..+|+.++.
T Consensus 8 ~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~~~ 60 (75)
T PRK04406 8 QLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNMDS 60 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 45555555555555555555555555555556667777778888777776653
No 63
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=90.78 E-value=1.4 Score=35.40 Aligned_cols=47 Identities=19% Similarity=0.251 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (318)
Q Consensus 258 ~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~ 304 (318)
++|..++..|+.....|..++..++.++..|..||..|..=|..|-.
T Consensus 19 ~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~ 65 (80)
T PF10224_consen 19 EELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLMS 65 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777788888888888888888888777777743
No 64
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=90.76 E-value=0.45 Score=43.03 Aligned_cols=46 Identities=20% Similarity=0.291 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKL 306 (318)
Q Consensus 257 l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl 306 (318)
|+++|.+.++.-.+|.-|..+|. +-..|..++.+||-++.+|+..+
T Consensus 2 LeD~EsklN~AIERnalLE~ELd----EKE~L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 2 LEDFESKLNQAIERNALLESELD----EKENLREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHCH--------------
T ss_pred HHHHHHHHHHHHHHhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999998883 45667777777777777777777
No 65
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=90.69 E-value=1.7 Score=41.59 Aligned_cols=57 Identities=23% Similarity=0.351 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 254 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFI 310 (318)
Q Consensus 254 k~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e 310 (318)
|..++++..+++.+..||..|..+++.+..+|..+.-.-..|+.+...|..+++.+.
T Consensus 134 ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~ 190 (290)
T COG4026 134 KEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLP 190 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Confidence 344566667777777777777777777666666555544444444444444444444
No 66
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=90.64 E-value=7.7 Score=35.68 Aligned_cols=79 Identities=27% Similarity=0.360 Sum_probs=52.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHH
Q 021065 232 DDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDES---------------AVNNRILK 296 (318)
Q Consensus 232 e~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l---------------~~EN~~Lr 296 (318)
+....++.+.+-+.-+.+=..-+.++..++.++..|+-++..|..++..+.++...| ...|-.|.
T Consensus 70 e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLE 149 (201)
T PF13851_consen 70 EVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLE 149 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777777777777777777777788888888877777777777766665544 24455555
Q ss_pred HHHHHHHHHHHHHH
Q 021065 297 ADIETLRAKLYMFI 310 (318)
Q Consensus 297 ael~~Lr~kl~~~e 310 (318)
..+..|...+..-+
T Consensus 150 kKl~~l~~~lE~ke 163 (201)
T PF13851_consen 150 KKLQALSEQLEKKE 163 (201)
T ss_pred HHHHHHHHHHHHHH
Confidence 55555555544433
No 67
>PRK02119 hypothetical protein; Provisional
Probab=90.62 E-value=2.2 Score=33.47 Aligned_cols=49 Identities=14% Similarity=0.127 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFI 310 (318)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e 310 (318)
+++.+||.++..++.-...|...+.. ...+-..|+.++..|..+|+.++
T Consensus 9 ~Ri~~LE~rla~QE~tie~LN~~v~~-------Qq~~id~L~~ql~~L~~rl~~~~ 57 (73)
T PRK02119 9 NRIAELEMKIAFQENLLEELNQALIE-------QQFVIDKMQVQLRYMANKLKDMQ 57 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhhc
Confidence 44555555555555555555555444 44444556666666666666554
No 68
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=90.58 E-value=1.6 Score=42.44 Aligned_cols=55 Identities=20% Similarity=0.162 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 257 LNELETQAGQLRAEHSSLLKGLTDVNQK-----------YDESAVNNRILKADIETLRAKLYMFIE 311 (318)
Q Consensus 257 l~eLE~qV~~L~~EN~~L~~~l~~L~qk-----------~~~l~~EN~~Lrael~~Lr~kl~~~e~ 311 (318)
|..||.+...|+.+|+.|..++..++.+ ...|+-+|..+++..+.|+.+|..||-
T Consensus 54 L~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt~aikeql~kyiReLEQ 119 (333)
T KOG1853|consen 54 LDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDLSQTHAIKEQLRKYIRELEQ 119 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555555544433 346677888888888888888887774
No 69
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=90.45 E-value=1.6 Score=33.67 Aligned_cols=49 Identities=18% Similarity=0.249 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR 303 (318)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr 303 (318)
++|.+||.++..++.-...|...+....+++..|..+.+.|..++..++
T Consensus 4 ~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 4 ERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5677888888887777777777777666666655555555444444443
No 70
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=90.23 E-value=1.2 Score=37.88 Aligned_cols=47 Identities=23% Similarity=0.310 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIET 301 (318)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~ 301 (318)
..+.+||.++..|-.+...|++.+..+.++...|..||..||..+..
T Consensus 8 d~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 8 DQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 45789999999999999999999999999999999999999999887
No 71
>PRK04325 hypothetical protein; Provisional
Probab=90.18 E-value=2.2 Score=33.47 Aligned_cols=49 Identities=16% Similarity=0.104 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIE 311 (318)
Q Consensus 256 ~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~ 311 (318)
++.+||.++..++.-...|...+.. ...+-..|+.++..|..||+.++.
T Consensus 10 Ri~~LE~klAfQE~tIe~LN~vv~~-------Qq~~I~~L~~ql~~L~~rl~~~~~ 58 (74)
T PRK04325 10 RITELEIQLAFQEDLIDGLNATVAR-------QQQTLDLLQAQLRLLYQQMRDANP 58 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3666666666666555555555544 444445666777777777766653
No 72
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=89.97 E-value=5.4 Score=42.72 Aligned_cols=74 Identities=22% Similarity=0.315 Sum_probs=46.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHHHHHHHHHHHH---
Q 021065 241 SNRESARRSRRRKQAHLNELETQAGQLR------------------------AEHSSLLKGLTDVNQKYDESAVNNR--- 293 (318)
Q Consensus 241 sNRESArRSR~RKk~~l~eLE~qV~~L~------------------------~EN~~L~~~l~~L~qk~~~l~~EN~--- 293 (318)
.|.+.--+--..+..+|.+||.++..++ ..|..|+.+|..|...|..+.++|-
T Consensus 108 ~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~eLK~QL~Elq~~Fv~ltne~~elt 187 (617)
T PF15070_consen 108 ENNEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNRELKEQLAELQDAFVKLTNENMELT 187 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHhh
Confidence 3444333333366677777776665444 3577888889999999998888884
Q ss_pred -----------HHHHHHHHHHHHHHHHHHhhh
Q 021065 294 -----------ILKADIETLRAKLYMFIEIFL 314 (318)
Q Consensus 294 -----------~Lrael~~Lr~kl~~~e~~v~ 314 (318)
.|..++..|..++..+.+.|+
T Consensus 188 ~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le 219 (617)
T PF15070_consen 188 SALQSEQHVKKELQKKLGELQEKLHNLKEKLE 219 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555443
No 73
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=89.88 E-value=9.5 Score=31.07 Aligned_cols=74 Identities=14% Similarity=0.063 Sum_probs=60.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 237 RRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFI 310 (318)
Q Consensus 237 RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e 310 (318)
-++...++.....=..|+..+..||.++..|..|...-..+.-.+......+..||+.|+..+..=+.-+..+.
T Consensus 6 ~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~ 79 (96)
T PF08647_consen 6 VSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQLK 79 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 45666677777777889999999999999999999999999999999999999999999887765444444333
No 74
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=89.84 E-value=2.2 Score=32.88 Aligned_cols=53 Identities=17% Similarity=0.194 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 259 ELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIE 311 (318)
Q Consensus 259 eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~ 311 (318)
.|+.++..|+...+-+-..+..|+.-+.....+-..|+.++..|..||+.+++
T Consensus 1 ~le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~~ 53 (69)
T PF04102_consen 1 MLEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELED 53 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 37899999999999999999999999999999999999999999999988773
No 75
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=89.82 E-value=6.5 Score=36.75 Aligned_cols=38 Identities=18% Similarity=0.116 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 263 QAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIE 300 (318)
Q Consensus 263 qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~ 300 (318)
++..|+.|...|...+..+...+.....+-..|..++.
T Consensus 57 e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~ 94 (251)
T PF11932_consen 57 EYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIE 94 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333
No 76
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=89.80 E-value=2.8 Score=37.84 Aligned_cols=55 Identities=15% Similarity=0.215 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021065 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEI 312 (318)
Q Consensus 258 ~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~ 312 (318)
..|+.+...|+.++..|..++..|..++..|..++..++.+..+|-.-+..+..+
T Consensus 100 ~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~RARkl 154 (161)
T TIGR02894 100 QALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDRARKL 154 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555555555555555555555555555555555544444443
No 77
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=89.70 E-value=2.9 Score=40.78 Aligned_cols=59 Identities=17% Similarity=0.181 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021065 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIF 313 (318)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v 313 (318)
..|..|..++..+..+...++.++..++.++..+..+-..+..+...|...+..++.++
T Consensus 209 ~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~ 267 (325)
T PF08317_consen 209 EELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIR 267 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555666666666666666666666666666666666666666666666666554
No 78
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=89.68 E-value=5.2 Score=43.39 Aligned_cols=54 Identities=15% Similarity=0.184 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHhh
Q 021065 260 LETQAGQLRAEHSSLLKGLTDVNQKYDESAVNN--------------RILKADIETLRAKLYMFIEIF 313 (318)
Q Consensus 260 LE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN--------------~~Lrael~~Lr~kl~~~e~~v 313 (318)
+..+..+|+.|...|+.++.....++..++.|. ..|...+..|+.|-..||+-+
T Consensus 543 ~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sL 610 (697)
T PF09726_consen 543 CRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSL 610 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 444455555555555555554444444444444 344444556666666666544
No 79
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=89.64 E-value=3.4 Score=36.11 Aligned_cols=16 Identities=19% Similarity=0.366 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHhh
Q 021065 298 DIETLRAKLYMFIEIF 313 (318)
Q Consensus 298 el~~Lr~kl~~~e~~v 313 (318)
.++.|..||.++|+-+
T Consensus 74 ~~E~l~rriq~LEeel 89 (143)
T PF12718_consen 74 NAEQLNRRIQLLEEEL 89 (143)
T ss_pred hHHHHHhhHHHHHHHH
Confidence 3334555555555443
No 80
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=89.53 E-value=3 Score=44.13 Aligned_cols=66 Identities=21% Similarity=0.237 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH-----------------------------HHHHHHH
Q 021065 248 RSRRRKQAHLNELE-------TQAGQLRAEHSSLLKGLTDVNQK-----------------------------YDESAVN 291 (318)
Q Consensus 248 RSR~RKk~~l~eLE-------~qV~~L~~EN~~L~~~l~~L~qk-----------------------------~~~l~~E 291 (318)
.+|.|-|++|.+|- .+|..|+.||..|...+..|+.. ...++.+
T Consensus 35 ~sR~rEK~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~e 114 (546)
T KOG0977|consen 35 DSREREKKELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIE 114 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666665 45778999999998888877633 3355566
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 021065 292 NRILKADIETLRAKLYMFIEIF 313 (318)
Q Consensus 292 N~~Lrael~~Lr~kl~~~e~~v 313 (318)
-..|+.++.+|+.++..++..+
T Consensus 115 i~kl~~e~~elr~~~~~~~k~~ 136 (546)
T KOG0977|consen 115 ITKLREELKELRKKLEKAEKER 136 (546)
T ss_pred HHHhHHHHHHHHHHHHHHHHHH
Confidence 6667777777777766665444
No 81
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=89.33 E-value=0.83 Score=43.97 Aligned_cols=36 Identities=22% Similarity=0.205 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Q 021065 263 QAGQLRAEHSSLLKGLTDVNQKYD----ESAVNNRILKAD 298 (318)
Q Consensus 263 qV~~L~~EN~~L~~~l~~L~qk~~----~l~~EN~~Lrae 298 (318)
.+.+|+.||.+|++++..+++++. .+..||+.||+-
T Consensus 67 ~~~~l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~L 106 (283)
T TIGR00219 67 DVNNLEYENYKLRQELLKKNQQLEILTQNLKQENVRLREL 106 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777777777666644433 356666666653
No 82
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=89.21 E-value=3.1 Score=33.50 Aligned_cols=58 Identities=19% Similarity=0.274 Sum_probs=46.0
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 253 KQAHLNELETQ-AGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFI 310 (318)
Q Consensus 253 Kk~~l~eLE~q-V~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e 310 (318)
....++.++.+ ...|..+...|...|..|..++.....||..|+.+-+.|+..|..+=
T Consensus 6 ~~~d~e~~~~e~k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm 64 (80)
T PF10224_consen 6 NSEDIEKLEKEEKEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLM 64 (80)
T ss_pred chHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555543 67888888889999999999999999999999999999998887663
No 83
>PRK02793 phi X174 lysis protein; Provisional
Probab=89.20 E-value=3.1 Score=32.52 Aligned_cols=50 Identities=22% Similarity=0.169 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIE 311 (318)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~ 311 (318)
++|.+||.++..++.-...|...+.. ...+-..|+.++..|..+|+.+++
T Consensus 8 ~Ri~~LE~~lafQe~tIe~Ln~~v~~-------Qq~~I~~L~~~l~~L~~rl~~~~~ 57 (72)
T PRK02793 8 ARLAELESRLAFQEITIEELNVTVTA-------HEMEMAKLRDHLRLLTEKLKASQP 57 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhhcc
Confidence 45666666666666555555555554 444445666677777777776654
No 84
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=89.17 E-value=2.4 Score=40.68 Aligned_cols=35 Identities=20% Similarity=0.420 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021065 279 TDVNQKYDESAVNNRILKADIETLRAKLYMFIEIF 313 (318)
Q Consensus 279 ~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v 313 (318)
.++.++...|+.||..||.+++.|+..+..+.+++
T Consensus 218 ~e~~~r~~~leken~~lr~~v~~l~~el~~~~~~~ 252 (269)
T KOG3119|consen 218 DEMAHRVAELEKENEALRTQVEQLKKELATLRRLF 252 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555666666666666665555555544
No 85
>PRK00846 hypothetical protein; Provisional
Probab=89.03 E-value=3.5 Score=33.01 Aligned_cols=53 Identities=17% Similarity=0.120 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 259 ELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIE 311 (318)
Q Consensus 259 eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~ 311 (318)
+++.++..|+...+-.-..+..|++.+.....+...|+.++..|..||+.++.
T Consensus 10 ~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~~ 62 (77)
T PRK00846 10 ALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVRS 62 (77)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34455555555555555555555555556666677788888888888887763
No 86
>PRK00295 hypothetical protein; Provisional
Probab=88.61 E-value=4.1 Score=31.46 Aligned_cols=50 Identities=14% Similarity=0.153 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIE 311 (318)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~ 311 (318)
+++.+||.++..++.-...|...+..-.+++ ..|+.++..|..+|+.+++
T Consensus 5 ~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I-------~~L~~ql~~L~~rl~~~~~ 54 (68)
T PRK00295 5 ERVTELESRQAFQDDTIQALNDVLVEQQRVI-------ERLQLQMAALIKRQEEMVG 54 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhhc
Confidence 3477888888777777766666666544444 5566667777777766653
No 87
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=88.57 E-value=3.2 Score=38.49 Aligned_cols=53 Identities=17% Similarity=0.244 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFI 310 (318)
Q Consensus 258 ~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e 310 (318)
.+|-..|+.|+.-|..|..++..|...+..++-.|..|..++..|+..++.+.
T Consensus 4 ~dL~~~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Q 56 (193)
T PF14662_consen 4 SDLLSCVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQ 56 (193)
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555555555555555555555443
No 88
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=88.54 E-value=2.8 Score=32.65 Aligned_cols=49 Identities=27% Similarity=0.340 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (318)
Q Consensus 256 ~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~ 304 (318)
++.-.+.....|..|+.....++..+-..+..|..||..|+.++..++.
T Consensus 20 k~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r~ 68 (69)
T PF14197_consen 20 KNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEELRA 68 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3445556677788888888888888888888888888888888777764
No 89
>PF10506 MCC-bdg_PDZ: PDZ domain of MCC-2 bdg protein for Usher syndrome; InterPro: IPR019536 The entry represents a protein that has a high homology to the tumour suppressor Usher syndrome type-1C protein-binding protein 1, or known as MCC2 (mutated in colon cancer). MCC2 protein binds the first PDZ domain of AIE-75 with its C-terminal amino acids -DTFL. A possible role of MCC2 as a tumour suppressor has been put forward. The carboxyl terminus of the predicted protein was DTFL which matched the consensus motif X-S/T-X-phi (phi: hydrophobic amino acid residue) for binding to the PDZ domain of AIE-75 [, ].
Probab=88.53 E-value=3.4 Score=32.23 Aligned_cols=56 Identities=16% Similarity=0.173 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021065 259 ELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFL 314 (318)
Q Consensus 259 eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~ 314 (318)
.|..+++.|+..|..|...++..+++...+......-.+....||.+++..++.+.
T Consensus 2 rL~~~ie~L~~~n~~L~~~le~~k~~se~Ls~~lgk~es~~~alrlal~ys~r~~e 57 (67)
T PF10506_consen 2 RLKRRIEELKSQNEMLSSTLEERKQQSEELSMDLGKYESNATALRLALKYSERCKE 57 (67)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 47788999999999999999999999999999999999999999998887776653
No 90
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=88.34 E-value=4.5 Score=33.59 Aligned_cols=57 Identities=14% Similarity=0.220 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 254 QAHLNELETQAGQLRAEHSSLLKGLTDV--NQKYDESAVNNRILKADIETLRAKLYMFI 310 (318)
Q Consensus 254 k~~l~eLE~qV~~L~~EN~~L~~~l~~L--~qk~~~l~~EN~~Lrael~~Lr~kl~~~e 310 (318)
+..++.|+.++......-+.|..++..| ...++.|..+=..++-++.+|+++|+-++
T Consensus 34 ~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~ 92 (106)
T PF10805_consen 34 REDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVS 92 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3444444444444444444444444444 34444444444444444444444444433
No 91
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=88.20 E-value=1.6 Score=43.64 Aligned_cols=32 Identities=28% Similarity=0.349 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 263 QAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILK 296 (318)
Q Consensus 263 qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lr 296 (318)
|...|+.||..|++++++|+.+...| ||..||
T Consensus 33 e~~aLr~EN~~LKkEN~~Lk~eVerL--E~e~l~ 64 (420)
T PF07407_consen 33 ENFALRMENHSLKKENNDLKIEVERL--ENEMLR 64 (420)
T ss_pred hhhhHHHHhHHHHHHHHHHHHHHHHH--HHHhhh
Confidence 45567777777777777777777777 555665
No 92
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=88.14 E-value=6.5 Score=36.51 Aligned_cols=42 Identities=19% Similarity=0.300 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADI 299 (318)
Q Consensus 258 ~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael 299 (318)
..|..++..|+.+|-.|..+...+..++..|..+|..|+.++
T Consensus 98 q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql 139 (193)
T PF14662_consen 98 QSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQL 139 (193)
T ss_pred HHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHH
Confidence 456667777777777777777777777777777777666666
No 93
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=88.06 E-value=5.5 Score=34.15 Aligned_cols=16 Identities=31% Similarity=0.607 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHhh
Q 021065 298 DIETLRAKLYMFIEIF 313 (318)
Q Consensus 298 el~~Lr~kl~~~e~~v 313 (318)
++++|+.-|..+.+|.
T Consensus 97 ~veEL~~Dv~DlK~my 112 (120)
T PF12325_consen 97 EVEELRADVQDLKEMY 112 (120)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 94
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=88.06 E-value=1.9 Score=32.60 Aligned_cols=25 Identities=20% Similarity=0.405 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 256 HLNELETQAGQLRAEHSSLLKGLTD 280 (318)
Q Consensus 256 ~l~eLE~qV~~L~~EN~~L~~~l~~ 280 (318)
.+.+|+.+++.|+.+|..|..++..
T Consensus 25 ei~~l~~~i~~l~~e~~~L~~ei~~ 49 (80)
T PF04977_consen 25 EIAELQKEIEELKKENEELKEEIER 49 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444433
No 95
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=87.92 E-value=16 Score=33.92 Aligned_cols=84 Identities=14% Similarity=0.178 Sum_probs=68.2
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 231 VDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFI 310 (318)
Q Consensus 231 ~e~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e 310 (318)
.|.+|. ++..-..-..|.-..-++++..|...+...+..-+....+-..++.+...|..|.+.+++++..|+..|..|+
T Consensus 103 ~eirR~-~LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq 181 (192)
T PF11180_consen 103 VEIRRA-QLEAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQVRQLQ 181 (192)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344443 4555566666777777888899999999888888888888888999999999999999999999999999998
Q ss_pred Hhhhh
Q 021065 311 EIFLG 315 (318)
Q Consensus 311 ~~v~~ 315 (318)
.-...
T Consensus 182 ~q~~~ 186 (192)
T PF11180_consen 182 RQANE 186 (192)
T ss_pred HHhcC
Confidence 76543
No 96
>smart00340 HALZ homeobox associated leucin zipper.
Probab=87.90 E-value=1.1 Score=32.35 Aligned_cols=26 Identities=23% Similarity=0.345 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 279 TDVNQKYDESAVNNRILKADIETLRA 304 (318)
Q Consensus 279 ~~L~qk~~~l~~EN~~Lrael~~Lr~ 304 (318)
+.|++.+..|..||+.|+.++++||+
T Consensus 8 e~LKrcce~LteeNrRL~ke~~eLra 33 (44)
T smart00340 8 ELLKRCCESLTEENRRLQKEVQELRA 33 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45677788899999999999999985
No 97
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=87.77 E-value=3.2 Score=41.03 Aligned_cols=57 Identities=19% Similarity=0.203 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021065 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFL 314 (318)
Q Consensus 258 ~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~ 314 (318)
..|...+..|+.+|..|+.++...+.++..|..+|+.||.....+.++..+=|+-|.
T Consensus 23 ~~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqEEE~is 79 (310)
T PF09755_consen 23 EQLRKRIESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQAKAEQEEEFIS 79 (310)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777888888888888888888888888888888888888888888777776553
No 98
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=87.65 E-value=12 Score=36.50 Aligned_cols=57 Identities=21% Similarity=0.340 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 254 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFI 310 (318)
Q Consensus 254 k~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e 310 (318)
+..++.++.++.+.+.+.+.+..++.+...++..+..+-..|...+..+..||..+.
T Consensus 206 ~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~kf~ 262 (269)
T PF05278_consen 206 KEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVEKFH 262 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 566777777777788888888888888888888888877777777777777776653
No 99
>smart00338 BRLZ basic region leucin zipper.
Probab=87.65 E-value=2.3 Score=31.79 Aligned_cols=37 Identities=24% Similarity=0.375 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021065 277 GLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIF 313 (318)
Q Consensus 277 ~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v 313 (318)
.+..|..++..|..+|..|+.++..|+..+..+.+.+
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 27 EIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555566666677777777777777777777666543
No 100
>PHA02562 46 endonuclease subunit; Provisional
Probab=87.62 E-value=9.2 Score=38.97 Aligned_cols=52 Identities=15% Similarity=0.164 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKL 306 (318)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl 306 (318)
..+.+++.++..++.....+..++..++.++..+..++..+..++..|..++
T Consensus 337 ~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l 388 (562)
T PHA02562 337 KKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDEL 388 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHH
Confidence 3334444443333333333333333333334444333333333333333333
No 101
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=87.50 E-value=11 Score=30.65 Aligned_cols=54 Identities=24% Similarity=0.301 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 021065 262 TQAGQLRAEHSSLLKGLTDVNQ---KYDESAVNNRILKADIETLRAKLYMFIEIFLG 315 (318)
Q Consensus 262 ~qV~~L~~EN~~L~~~l~~L~q---k~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~ 315 (318)
.+++.|+.+-..+.+++..+.. ....+..+-..|+.++..|..++..+++.+..
T Consensus 43 ~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~ 99 (108)
T PF02403_consen 43 QELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEELNE 99 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444433 24455556666666777777776666665543
No 102
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=87.38 E-value=5.2 Score=36.50 Aligned_cols=60 Identities=18% Similarity=0.163 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021065 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFL 314 (318)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~ 314 (318)
.+|++=..+...|..-|.-|+.+++........|..++..|+.+...|+..|..-|...+
T Consensus 67 ~rLeEEqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke~~~~ 126 (182)
T PF15035_consen 67 IRLEEEQQRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELEQKEAEWR 126 (182)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555566778888888888888888888888888888888888888877776665443
No 103
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=87.36 E-value=2.7 Score=31.38 Aligned_cols=37 Identities=19% Similarity=0.321 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021065 276 KGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEI 312 (318)
Q Consensus 276 ~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~ 312 (318)
..+..|..++..|..+|..|+.++..|...+..+...
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e 62 (64)
T PF00170_consen 26 QYIEELEEKVEELESENEELKKELEQLKKEIQSLKSE 62 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444555555556666666666666666666555543
No 104
>PRK02119 hypothetical protein; Provisional
Probab=87.23 E-value=4.1 Score=31.95 Aligned_cols=52 Identities=12% Similarity=0.049 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 021065 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFLG 315 (318)
Q Consensus 257 l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~ 315 (318)
+..++.++..|+...+-+...+.. |..--.....++..|+++|+.+-+.++.
T Consensus 4 ~~~~e~Ri~~LE~rla~QE~tie~-------LN~~v~~Qq~~id~L~~ql~~L~~rl~~ 55 (73)
T PRK02119 4 QQNLENRIAELEMKIAFQENLLEE-------LNQALIEQQFVIDKMQVQLRYMANKLKD 55 (73)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345666666666555544444433 2222223355667777777777666654
No 105
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=87.22 E-value=13 Score=34.03 Aligned_cols=59 Identities=15% Similarity=0.219 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 249 SRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLY 307 (318)
Q Consensus 249 SR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~ 307 (318)
...++-.++.+||.++-.|+.+.+.|....+....++..+..+-..|+.++...+.+-.
T Consensus 125 ~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~F~ 183 (190)
T PF05266_consen 125 ELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELEFQ 183 (190)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566788999999999999999999999999999999999999999999998876643
No 106
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=87.20 E-value=7.4 Score=40.03 Aligned_cols=69 Identities=20% Similarity=0.233 Sum_probs=35.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 234 KRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETL 302 (318)
Q Consensus 234 KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~L 302 (318)
|+.+-+.++=+.-.++....+.....|+.+++.++.++..|..++......+..+..++..+...+..|
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l 106 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNAL 106 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHH
Confidence 444444444444444444555556667777777766666666666554444444444443333333333
No 107
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=87.07 E-value=18 Score=30.80 Aligned_cols=63 Identities=19% Similarity=0.167 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 248 RSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFI 310 (318)
Q Consensus 248 RSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e 310 (318)
-||.-.+..+..|+..++.+...+..|.++-..|+...+.|..+|..+...+..|+++|..+.
T Consensus 9 as~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~ 71 (107)
T PF09304_consen 9 ASQNELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEAR 71 (107)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555666666666666666666666666666666666666666666666666665544
No 108
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=86.85 E-value=3.7 Score=40.32 Aligned_cols=62 Identities=26% Similarity=0.343 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 021065 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFLGEN 317 (318)
Q Consensus 256 ~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~~~ 317 (318)
.+...+.++...+.+...|..++..|+.+|.....+...|..++.....||..++.+|..+.
T Consensus 229 ~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~ 290 (344)
T PF12777_consen 229 ELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLS 290 (344)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhc
Confidence 45666677777777777888888888888888999999999999999999999999887653
No 109
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=86.83 E-value=8.7 Score=30.12 Aligned_cols=61 Identities=23% Similarity=0.197 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 021065 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFLGE 316 (318)
Q Consensus 256 ~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~~ 316 (318)
.|.+=..++.+|..|-..|..+.-.++..+..|...|..+..++..|..++..++.-|..+
T Consensus 6 ~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l 66 (74)
T PF12329_consen 6 KLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESL 66 (74)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667888888888888888888888888888888888888888888888877766543
No 110
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=86.78 E-value=6.6 Score=34.31 Aligned_cols=61 Identities=23% Similarity=0.269 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhhh
Q 021065 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESA---VNNRILKADIETLRAKLYMFIEIFLG 315 (318)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~---~EN~~Lrael~~Lr~kl~~~e~~v~~ 315 (318)
..|..|..++..|+.+...|..++..+...+.... ..|..|...|..|...|..++..++.
T Consensus 35 ~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~~L~e 98 (143)
T PF12718_consen 35 QEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEKKLKE 98 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444443333322 23445555666666555555555443
No 111
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=86.77 E-value=13 Score=38.39 Aligned_cols=18 Identities=33% Similarity=0.414 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 021065 255 AHLNELETQAGQLRAEHS 272 (318)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~ 272 (318)
.+|.+||.+++.++.+..
T Consensus 66 ~~lk~~e~~i~~~~~ql~ 83 (420)
T COG4942 66 KQLKSLETEIASLEAQLI 83 (420)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444433333
No 112
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=86.73 E-value=6.3 Score=34.87 Aligned_cols=55 Identities=18% Similarity=0.277 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021065 260 LETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFL 314 (318)
Q Consensus 260 LE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~ 314 (318)
.+.++..++.....+.+++.++...+.....+=..++.++..++.....++++++
T Consensus 128 ~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 182 (191)
T PF04156_consen 128 VEERLDSLDESIKELEKEIRELQKELQDSREEVQELRSQLERLQENLQQLEEKIQ 182 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444445555555555555555555544
No 113
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=86.37 E-value=16 Score=33.35 Aligned_cols=59 Identities=17% Similarity=0.238 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHhhhh
Q 021065 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVN--------NRILKADIETLRAKLYMFIEIFLG 315 (318)
Q Consensus 257 l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~E--------N~~Lrael~~Lr~kl~~~e~~v~~ 315 (318)
..+|+.++..|+.++..|..++..+..++..+... +.....++..|+.....+.+-+++
T Consensus 122 ~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~~~~ql~~~l~~ 188 (189)
T PF10211_consen 122 KQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLKKQNQQLKAQLEQ 188 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45666677777777777777777666666555443 444556666666666666655544
No 114
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=86.35 E-value=5.6 Score=38.96 Aligned_cols=62 Identities=15% Similarity=0.212 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 021065 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFLGE 316 (318)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~~ 316 (318)
..|+.+..++..|+.||..+..+....+..+..+..|+..+..++..|+.++..||.+.+.+
T Consensus 244 ~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~kLe~LcRaL 305 (309)
T PF09728_consen 244 KEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEKLKKKIEKLEKLCRAL 305 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44677777888999999999999999999999999999999999999999999999987754
No 115
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=86.14 E-value=2.3 Score=31.72 Aligned_cols=50 Identities=24% Similarity=0.326 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 252 RKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (318)
Q Consensus 252 RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~ 304 (318)
|++..|.+|+.++..=+ ..=...-....+++..+..||+.|++++..++.
T Consensus 1 kw~~Rl~ELe~klkaer---E~R~~d~~~a~~rl~~l~~EN~~Lr~eL~~~r~ 50 (52)
T PF12808_consen 1 KWLLRLEELERKLKAER---EARSLDRSAARKRLSKLEGENRLLRAELERLRS 50 (52)
T ss_pred CHHHHHHHHHHHHHHhH---HhccCCchhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35667778877765433 111222345667778899999999999988775
No 116
>PRK00736 hypothetical protein; Provisional
Probab=86.04 E-value=6.1 Score=30.54 Aligned_cols=49 Identities=14% Similarity=0.251 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFI 310 (318)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e 310 (318)
+++.+||.++..++.-...|...+..-.+++ ..|+.++..|..|++.++
T Consensus 5 ~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i-------~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00736 5 ERLTELEIRVAEQEKTIEELSDQLAEQWKTV-------EQMRKKLDALTERFLSLE 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhc
Confidence 4578888888888777777766666544444 456666777777766654
No 117
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=86.02 E-value=6.4 Score=30.16 Aligned_cols=42 Identities=17% Similarity=0.336 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 260 LETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYM 308 (318)
Q Consensus 260 LE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~ 308 (318)
+..++...+..|..+.++|.+ ....|+.|..+|..|+.++..
T Consensus 16 ~~eEL~kvk~~n~~~e~kLqe-------aE~rn~eL~~ei~~L~~e~ee 57 (61)
T PF08826_consen 16 IQEELTKVKSANLAFESKLQE-------AEKRNRELEQEIERLKKEMEE 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 334445555556555555555 555555555555555555443
No 118
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=86.01 E-value=12 Score=36.79 Aligned_cols=85 Identities=16% Similarity=0.262 Sum_probs=57.9
Q ss_pred cCCchHHHHHHHHHHhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 227 GLDSVDDKRARRMLSNRESARRSRRR--KQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (318)
Q Consensus 227 ~~d~~e~KR~RR~lsNRESArRSR~R--Kk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~ 304 (318)
.+-..++|=.|=|+.|-+ .==.| =.-+++-|..++..|+.....|.+++.+....+..+......|+.++..|+.
T Consensus 85 ~l~evEekyrkAMv~naQ---LDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre 161 (302)
T PF09738_consen 85 SLAEVEEKYRKAMVSNAQ---LDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELRE 161 (302)
T ss_pred HHHHHHHHHHHHHHHHhh---hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677888888988832 21111 1234555666677777777777777766666677777777888888888888
Q ss_pred HHHHHHHhhh
Q 021065 305 KLYMFIEIFL 314 (318)
Q Consensus 305 kl~~~e~~v~ 314 (318)
.|...+++|+
T Consensus 162 ~L~~rdeli~ 171 (302)
T PF09738_consen 162 QLKQRDELIE 171 (302)
T ss_pred HHHHHHHHHH
Confidence 8888877775
No 119
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=85.76 E-value=16 Score=38.86 Aligned_cols=9 Identities=11% Similarity=0.516 Sum_probs=5.5
Q ss_pred hHHHHHHHH
Q 021065 111 SDEYRAYLK 119 (318)
Q Consensus 111 p~~y~a~Lk 119 (318)
.-+|+.|+=
T Consensus 50 ~rdY~Tf~W 58 (546)
T PF07888_consen 50 TRDYYTFVW 58 (546)
T ss_pred hhheeeEEe
Confidence 347777753
No 120
>PRK02793 phi X174 lysis protein; Provisional
Probab=85.75 E-value=5.6 Score=31.09 Aligned_cols=50 Identities=16% Similarity=0.205 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 021065 259 ELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFLG 315 (318)
Q Consensus 259 eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~ 315 (318)
+++.++..|+...+-+...+.. |...-.....+|..|+++|+.+-+.++.
T Consensus 5 ~~e~Ri~~LE~~lafQe~tIe~-------Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 54 (72)
T PRK02793 5 SLEARLAELESRLAFQEITIEE-------LNVTVTAHEMEMAKLRDHLRLLTEKLKA 54 (72)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3555555555554444333332 2222222345566777777766665554
No 121
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=85.62 E-value=14 Score=34.40 Aligned_cols=86 Identities=12% Similarity=0.058 Sum_probs=52.2
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HH-----
Q 021065 231 VDDKRARRMLSNRESARRSRRRKQAH----LNELETQAGQLRAEHSSLLKGLTDVNQKYDESA----------VN----- 291 (318)
Q Consensus 231 ~e~KR~RR~lsNRESArRSR~RKk~~----l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~----------~E----- 291 (318)
.-.+|.||....+.++=.-+-+=.+. |...-.+|..|+..|+.|...+.+|+.-+..|. .|
T Consensus 20 el~~rLR~~E~ek~~~m~~~g~lm~evNrrlQ~hl~EIR~LKe~NqkLqedNqELRdLCCFLDddRqKgrklarEWQrFG 99 (195)
T PF10226_consen 20 ELVRRLRRAEAEKMSLMVEHGRLMKEVNRRLQQHLNEIRGLKEVNQKLQEDNQELRDLCCFLDDDRQKGRKLAREWQRFG 99 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhHHHhHHHhHHHHHhh
Confidence 34678888888777775444333222 222334456666667766666666664444333 22
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHhhhhc
Q 021065 292 ---NRILKADIETLRAKLYMFIEIFLGE 316 (318)
Q Consensus 292 ---N~~Lrael~~Lr~kl~~~e~~v~~~ 316 (318)
-.++++++.....||+.+|...+.+
T Consensus 100 ryta~vmr~eV~~Y~~KL~eLE~kq~~L 127 (195)
T PF10226_consen 100 RYTASVMRQEVAQYQQKLKELEDKQEEL 127 (195)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456888888888888887655443
No 122
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=85.36 E-value=6.2 Score=34.98 Aligned_cols=44 Identities=25% Similarity=0.366 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q 021065 264 AGQLRAEHSSLLKGLTDVNQKYDESAV---NNRILKADIETLRAKLY 307 (318)
Q Consensus 264 V~~L~~EN~~L~~~l~~L~qk~~~l~~---EN~~Lrael~~Lr~kl~ 307 (318)
+..+..+...|..+|.....++..|.. +|..|++++..|..+..
T Consensus 22 ~~~~~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~ 68 (155)
T PF06810_consen 22 VDKVKEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNK 68 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444433 55666666666665555
No 123
>PRK00295 hypothetical protein; Provisional
Probab=85.35 E-value=7.1 Score=30.16 Aligned_cols=49 Identities=16% Similarity=0.115 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 021065 260 LETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFLG 315 (318)
Q Consensus 260 LE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~ 315 (318)
++.++..|+...+-+...+..|+.- -.....+|..|+.+|+++.+.++.
T Consensus 3 ~e~Ri~~LE~kla~qE~tie~Ln~~-------v~~Qq~~I~~L~~ql~~L~~rl~~ 51 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQALNDV-------LVEQQRVIERLQLQMAALIKRQEE 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555554444444443333221 122345566666666666555543
No 124
>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]
Probab=85.07 E-value=0.043 Score=55.03 Aligned_cols=54 Identities=24% Similarity=0.279 Sum_probs=46.6
Q ss_pred CchHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 021065 229 DSVDDKRARRMLSNRESARR---SRRRKQAHLNELETQAGQLR-AEHSSLLKGLTDVN 282 (318)
Q Consensus 229 d~~e~KR~RR~lsNRESArR---SR~RKk~~l~eLE~qV~~L~-~EN~~L~~~l~~L~ 282 (318)
...+.|+..|+++|+.+|.+ +|.||+.+...|..+|+.|+ .+|..|..++..|.
T Consensus 149 ~~~~~~~~~rr~rn~~aA~~~~~~r~~~~~~t~~l~~qv~~l~~~~~~~l~~~is~Lq 206 (395)
T KOG1414|consen 149 PEPEEKRLLRRERNPVAAAKPIPCRNRKKPSTSPLQRQVELLPPGINSPLSPQISPLQ 206 (395)
T ss_pred CcchHHHHhhccccccccCCCCCCccccccccccccchHhhcCCCCCcccCccccccc
Confidence 45678999999999999999 99999999999999999999 88877666665543
No 125
>PRK09039 hypothetical protein; Validated
Probab=84.99 E-value=8.6 Score=38.08 Aligned_cols=6 Identities=17% Similarity=0.456 Sum_probs=2.6
Q ss_pred HHHHHh
Q 021065 115 RAYLKT 120 (318)
Q Consensus 115 ~a~Lk~ 120 (318)
|.||.+
T Consensus 41 q~fLs~ 46 (343)
T PRK09039 41 QFFLSR 46 (343)
T ss_pred HHHHHH
Confidence 444443
No 126
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=84.74 E-value=7 Score=38.65 Aligned_cols=24 Identities=25% Similarity=0.159 Sum_probs=15.0
Q ss_pred CChHHHHHHHHhhhhhhHHHHHHh
Q 021065 109 VDSDEYRAYLKTKLDLACAAVALR 132 (318)
Q Consensus 109 ~Dp~~y~a~Lk~kL~~~~AAva~~ 132 (318)
-+..+-+..|-..|...+..|+--
T Consensus 93 ~~L~~~~~~le~~L~~~~e~v~qL 116 (306)
T PF04849_consen 93 QDLSERNEALEEQLGAALEQVEQL 116 (306)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666777777766666543
No 127
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=84.67 E-value=9.2 Score=33.13 Aligned_cols=30 Identities=10% Similarity=-0.053 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021065 285 YDESAVNNRILKADIETLRAKLYMFIEIFL 314 (318)
Q Consensus 285 ~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~ 314 (318)
+..|+-|++.++.-...|..+|+|||-.++
T Consensus 34 Ia~LEGE~r~~e~l~~dL~rrIkMLE~aLk 63 (134)
T PF08232_consen 34 IAFLEGERRGQENLKKDLKRRIKMLEYALK 63 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444455555555555444
No 128
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=84.47 E-value=5.2 Score=38.16 Aligned_cols=16 Identities=31% Similarity=0.243 Sum_probs=13.6
Q ss_pred HHHHHHhhhhhhHHHH
Q 021065 114 YRAYLKTKLDLACAAV 129 (318)
Q Consensus 114 y~a~Lk~kL~~~~AAv 129 (318)
=+.-|..||+.|++.+
T Consensus 17 ~~~~L~~kLE~DL~~~ 32 (248)
T PF08172_consen 17 EQKELNAKLENDLAKV 32 (248)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3567899999999998
No 129
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=84.37 E-value=30 Score=33.73 Aligned_cols=68 Identities=13% Similarity=0.103 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC
Q 021065 251 RRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFLGENG 318 (318)
Q Consensus 251 ~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~~~~ 318 (318)
..+...++..+.+++.++.+..+..+++.+++.++.+....=..|+.+-..|...|..+..-|.+|-|
T Consensus 196 e~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~kf~~ 263 (269)
T PF05278_consen 196 EEKDRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVEKFHG 263 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33344455555666666666667777777777777777777777777777777777777777777654
No 130
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=84.37 E-value=12 Score=36.91 Aligned_cols=72 Identities=13% Similarity=0.188 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021065 243 RESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFL 314 (318)
Q Consensus 243 RESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~ 314 (318)
-|+++|-....+.++.+++.....-+.....-..+-+.+.+++..+..||--|++++.....|...-|.+|-
T Consensus 181 lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLddA~~K~~~kek~Vi 252 (305)
T PF14915_consen 181 LESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLLRQQLDDAHNKADNKEKTVI 252 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 367888888888888888877766666666666677778888889999999999999999998887777664
No 131
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=84.29 E-value=28 Score=33.27 Aligned_cols=59 Identities=17% Similarity=0.149 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021065 254 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEI 312 (318)
Q Consensus 254 k~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~ 312 (318)
...+..|+.++..++.+-..|..++..|..++..+..+-..|+.++..++..+..++..
T Consensus 88 ~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~ 146 (239)
T COG1579 88 ERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEAR 146 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466666666666666666666666666666666666666666666666665555544
No 132
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=84.12 E-value=6.4 Score=30.42 Aligned_cols=33 Identities=18% Similarity=0.206 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 272 SSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (318)
Q Consensus 272 ~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~ 304 (318)
..+..++..+++++..+..||..|+.++..|..
T Consensus 27 ~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~ 59 (85)
T TIGR02209 27 RQLNNELQKLQLEIDKLQKEWRDLQLEVAELSR 59 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 344444455555555555555555555555544
No 133
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=84.08 E-value=20 Score=35.18 Aligned_cols=55 Identities=20% Similarity=0.209 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFI 310 (318)
Q Consensus 256 ~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e 310 (318)
.+..|+.+...|..+-..+......+..++..+..+...|+.++..+..+|..++
T Consensus 79 el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~ 133 (314)
T PF04111_consen 79 ELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLR 133 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444455555555555555555555555444
No 134
>PF15294 Leu_zip: Leucine zipper
Probab=84.03 E-value=3.9 Score=39.86 Aligned_cols=45 Identities=18% Similarity=0.316 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 260 LETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (318)
Q Consensus 260 LE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~ 304 (318)
|..++..|+.||..|+.++..+..++....-|+..|..++..|+.
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~ 174 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD 174 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677778888888888888888888888888888888887777
No 135
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=83.97 E-value=2.9 Score=45.33 Aligned_cols=47 Identities=28% Similarity=0.361 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 260 LETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKL 306 (318)
Q Consensus 260 LE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl 306 (318)
||..|+.|+.|.+..+..=++|+.++..+....+.||.++..||.+.
T Consensus 423 LE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~en 469 (697)
T PF09726_consen 423 LEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQEN 469 (697)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHH
Confidence 44444444444444444444444443333333333333333333333
No 136
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=83.83 E-value=14 Score=41.06 Aligned_cols=31 Identities=19% Similarity=0.163 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 021065 285 YDESAVNNRILKADIETLRAKLYMFIEIFLG 315 (318)
Q Consensus 285 ~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~ 315 (318)
+-.+...|..|..++++|.-|++.++..|.-
T Consensus 432 iv~~nak~~ql~~eletLn~k~qqls~kl~D 462 (1118)
T KOG1029|consen 432 IVYLNAKKKQLQQELETLNFKLQQLSGKLQD 462 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 3345566777788888888888888776653
No 137
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=83.81 E-value=12 Score=40.16 Aligned_cols=32 Identities=19% Similarity=0.230 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYD 286 (318)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~ 286 (318)
.+..+|+..+..|+.++..|..++..+..+..
T Consensus 436 ~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~ 467 (652)
T COG2433 436 EENSELKRELEELKREIEKLESELERFRREVR 467 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666666655433
No 138
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=83.73 E-value=33 Score=31.68 Aligned_cols=33 Identities=21% Similarity=0.295 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAV 290 (318)
Q Consensus 258 ~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~ 290 (318)
..++.++..|+.+...+..++...++++..+..
T Consensus 66 ~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~ 98 (302)
T PF10186_consen 66 EELRERLERLRERIERLRKRIEQKRERLEELRE 98 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333
No 139
>PHA03162 hypothetical protein; Provisional
Probab=83.72 E-value=3.9 Score=35.96 Aligned_cols=29 Identities=21% Similarity=0.406 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 251 RRKQAHLNELETQAGQLRAEHSSLLKGLT 279 (318)
Q Consensus 251 ~RKk~~l~eLE~qV~~L~~EN~~L~~~l~ 279 (318)
-+|+.-+++|..++..|+.||..|++++.
T Consensus 9 pk~~~tmEeLaaeL~kLqmENK~LKkkl~ 37 (135)
T PHA03162 9 PKAQPTMEDLAAEIAKLQLENKALKKKIK 37 (135)
T ss_pred CccCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667799999999999999999999983
No 140
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.72 E-value=9.1 Score=37.14 Aligned_cols=56 Identities=13% Similarity=0.297 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021065 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIF 313 (318)
Q Consensus 258 ~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v 313 (318)
.+++.+|+.|..+...+..++..+..++..+..+=..|+.+|..|...|..-.+.+
T Consensus 48 ~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l 103 (265)
T COG3883 48 KNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELL 103 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444455555555555555555554444433
No 141
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=83.71 E-value=8.1 Score=36.37 Aligned_cols=36 Identities=22% Similarity=0.293 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Q 021065 264 AGQLRAEHSSLLKGLTDVNQKYD---ESAVNNRILKADI 299 (318)
Q Consensus 264 V~~L~~EN~~L~~~l~~L~qk~~---~l~~EN~~Lrael 299 (318)
...|+.||..|++++..|+.+.. .+..||..||..+
T Consensus 71 ~~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL 109 (276)
T PRK13922 71 LFDLREENEELKKELLELESRLQELEQLEAENARLRELL 109 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444555555555544444333 5566666666543
No 142
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=83.58 E-value=4.8 Score=38.31 Aligned_cols=52 Identities=13% Similarity=0.193 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKL 306 (318)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl 306 (318)
+-+.+|..|++.|+.|...|+.+++.++.++..+....+.|-.++..+..++
T Consensus 54 ~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r~~~~ 105 (263)
T PRK10803 54 QLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSLSSGG 105 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3457889999999999999999999999999999999999988888865543
No 143
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=83.55 E-value=9.7 Score=29.92 Aligned_cols=33 Identities=15% Similarity=0.176 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 274 LLKGLTDVNQKYDESAVNNRILKADIETLRAKL 306 (318)
Q Consensus 274 L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl 306 (318)
|...+....++...|...+..|-.++..|...+
T Consensus 33 Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql 65 (70)
T PF04899_consen 33 LQHMFEQTSQENAALSEQVNNLSQQVQRLSEQL 65 (70)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333444444444333
No 144
>PRK04325 hypothetical protein; Provisional
Probab=83.52 E-value=7.9 Score=30.38 Aligned_cols=53 Identities=11% Similarity=0.165 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 021065 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFLGE 316 (318)
Q Consensus 257 l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~~ 316 (318)
...++.++..|+...+-+...++.| ...-.....+|..|+.+|+.+-+.++.+
T Consensus 4 ~~~~e~Ri~~LE~klAfQE~tIe~L-------N~vv~~Qq~~I~~L~~ql~~L~~rl~~~ 56 (74)
T PRK04325 4 VQEMEDRITELEIQLAFQEDLIDGL-------NATVARQQQTLDLLQAQLRLLYQQMRDA 56 (74)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556666666665555544444332 2222223455677777777776666543
No 145
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=83.38 E-value=7.3 Score=34.77 Aligned_cols=45 Identities=27% Similarity=0.364 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 262 TQAGQLRAEHSSLLKGLTDV-NQKYDESAVNNRILKADIETLRAKL 306 (318)
Q Consensus 262 ~qV~~L~~EN~~L~~~l~~L-~qk~~~l~~EN~~Lrael~~Lr~kl 306 (318)
...-.++...++|+.++..+ +.++..+..++..|+.+++.|+.+|
T Consensus 51 ~~~~~~~a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l~~~L 96 (177)
T PF07798_consen 51 NQEYLFKAAIAELRSELQNSRKSEFAELRSENEKLQREIEKLRQEL 96 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444333 2334444444444444444444443
No 146
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=83.36 E-value=12 Score=39.09 Aligned_cols=77 Identities=22% Similarity=0.363 Sum_probs=49.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHH
Q 021065 233 DKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDES--------AVNNRILKADIETLRA 304 (318)
Q Consensus 233 ~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l--------~~EN~~Lrael~~Lr~ 304 (318)
....++|.+.-+.-+ |-.+.+.+|+.+++..+.|+....-+--.|..+..++ -+||..+|++++.||.
T Consensus 241 kehv~km~kdle~Lq----~aEqsl~dlQk~Lekar~e~rnvavek~~lerkl~ea~rl~elreg~e~e~~rkelE~lR~ 316 (575)
T KOG4403|consen 241 KEHVNKMMKDLEGLQ----RAEQSLEDLQKRLEKAREEQRNVAVEKLDLERKLDEAPRLSELREGVENETSRKELEQLRV 316 (575)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHH
Confidence 334445555444433 3345667777777766666555444444444444422 4788999999999999
Q ss_pred HHHHHHHhh
Q 021065 305 KLYMFIEIF 313 (318)
Q Consensus 305 kl~~~e~~v 313 (318)
.|..+|..+
T Consensus 317 ~L~kAEkel 325 (575)
T KOG4403|consen 317 ALEKAEKEL 325 (575)
T ss_pred HHHHHHHHH
Confidence 999999765
No 147
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=83.25 E-value=8.5 Score=31.21 Aligned_cols=76 Identities=17% Similarity=0.269 Sum_probs=54.2
Q ss_pred HhHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q 021065 241 SNRESARRSRRRKQ------AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAV---NNRILKADIETLRAKLYMFIE 311 (318)
Q Consensus 241 sNRESArRSR~RKk------~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~---EN~~Lrael~~Lr~kl~~~e~ 311 (318)
.|.+..+.+-.++. ..+-+|..+...|..+-..|+.+-..+..++..+.. +-..|++++..|..++..+|.
T Consensus 9 ~n~e~v~~~l~~R~~~~~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~ 88 (108)
T PF02403_consen 9 ENPEEVRENLKKRGGDEEDVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEE 88 (108)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHcCCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHH
Confidence 46666666555553 456666677777777777777777777777777765 467788888888888888888
Q ss_pred hhhhc
Q 021065 312 IFLGE 316 (318)
Q Consensus 312 ~v~~~ 316 (318)
.+..+
T Consensus 89 ~~~~~ 93 (108)
T PF02403_consen 89 QLKEL 93 (108)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77653
No 148
>PRK04406 hypothetical protein; Provisional
Probab=83.17 E-value=8.1 Score=30.53 Aligned_cols=49 Identities=12% Similarity=0.151 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR 303 (318)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr 303 (318)
+++.+||.++..++.-...|...+..-.+++..|..+=+.|+.++..+.
T Consensus 11 ~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 59 (75)
T PRK04406 11 ERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNMD 59 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5789999999999999999999999999999999988888888887765
No 149
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=83.11 E-value=5.8 Score=41.31 Aligned_cols=55 Identities=13% Similarity=0.170 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021065 259 ELETQAGQLRAEHSSLLKGLTDVN-QKYDESAVNNRILKADIETLRAKLYMFIEIF 313 (318)
Q Consensus 259 eLE~qV~~L~~EN~~L~~~l~~L~-qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v 313 (318)
.|..+.+.|+.....+..++...- ....++..|-+.|+.++..|+..|..+.+.+
T Consensus 84 ~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l 139 (472)
T TIGR03752 84 ALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQRRL 139 (472)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555444444444332 2233444455555555555555555554443
No 150
>PRK00736 hypothetical protein; Provisional
Probab=82.93 E-value=9.3 Score=29.53 Aligned_cols=19 Identities=37% Similarity=0.478 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 021065 296 KADIETLRAKLYMFIEIFL 314 (318)
Q Consensus 296 rael~~Lr~kl~~~e~~v~ 314 (318)
..+|..|+.+|+.+-+.++
T Consensus 32 q~~i~~L~~ql~~L~~rl~ 50 (68)
T PRK00736 32 WKTVEQMRKKLDALTERFL 50 (68)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455666666666655544
No 151
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=82.90 E-value=13 Score=35.08 Aligned_cols=65 Identities=14% Similarity=0.174 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 021065 251 RRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFLG 315 (318)
Q Consensus 251 ~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~ 315 (318)
.....+|++++.+.+.|..|-..+..+|..+.+.+..++..=..++.+....+..+..+.+.+.+
T Consensus 28 e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~ 92 (230)
T PF10146_consen 28 ENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKP 92 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34457888889999999998888888888888888877766666666666666666655555443
No 152
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=82.57 E-value=25 Score=36.30 Aligned_cols=44 Identities=9% Similarity=0.069 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 021065 273 SLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFLGE 316 (318)
Q Consensus 273 ~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~~ 316 (318)
.|..-+..+.+++..+..+.+.|..++.+|+.+|..+++.+..+
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l 171 (525)
T TIGR02231 128 EWFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELNAL 171 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444455555555555555666666666666666666555444
No 153
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=82.55 E-value=17 Score=35.11 Aligned_cols=21 Identities=19% Similarity=0.176 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 021065 294 ILKADIETLRAKLYMFIEIFL 314 (318)
Q Consensus 294 ~Lrael~~Lr~kl~~~e~~v~ 314 (318)
.++.++..++.++..++..+.
T Consensus 250 ~~~~~l~~~~~~l~~~~~~l~ 270 (423)
T TIGR01843 250 EAQARLAELRERLNKARDRLQ 270 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 345555555555555554433
No 154
>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]
Probab=82.15 E-value=0.62 Score=46.82 Aligned_cols=52 Identities=29% Similarity=0.461 Sum_probs=42.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q 021065 233 DKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLL-KGLTDVNQK 284 (318)
Q Consensus 233 ~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~-~~l~~L~qk 284 (318)
+++.|=+.+||.+|-++|.|||.....|+.+...+..+|..|. .+++.|..+
T Consensus 284 ~~~~~~lern~~aas~~r~~~k~~~~~~~~~~~~~~~~n~~l~~~~~~~l~~~ 336 (395)
T KOG1414|consen 284 ERRRRFLERNRAAASRCRQKKKVWVLSLEKKAEELSSENGQLLLNEVELLRNE 336 (395)
T ss_pred hhhhhhhhhhhhhhccccCCcccccccccccccchhhhhcccccchhhHHHhH
Confidence 3445558999999999999999999999999999999998887 444443333
No 155
>PRK14127 cell division protein GpsB; Provisional
Probab=82.15 E-value=7.9 Score=32.85 Aligned_cols=13 Identities=8% Similarity=0.033 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHhh
Q 021065 301 TLRAKLYMFIEIF 313 (318)
Q Consensus 301 ~Lr~kl~~~e~~v 313 (318)
.+-.||..||..|
T Consensus 89 DiLKRls~LEk~V 101 (109)
T PRK14127 89 DILKRLSNLEKHV 101 (109)
T ss_pred HHHHHHHHHHHHH
Confidence 4455666666554
No 156
>PHA03155 hypothetical protein; Provisional
Probab=82.12 E-value=10 Score=32.65 Aligned_cols=26 Identities=35% Similarity=0.479 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 255 AHLNELETQAGQLRAEHSSLLKGLTD 280 (318)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~ 280 (318)
.-+++|+.++..|+.||..|++++..
T Consensus 8 ~tvEeLaaeL~kL~~ENK~LKkkl~~ 33 (115)
T PHA03155 8 ADVEELEKELQKLKIENKALKKKLLQ 33 (115)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34799999999999999999999854
No 157
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=82.02 E-value=8.4 Score=42.43 Aligned_cols=64 Identities=20% Similarity=0.302 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021065 251 RRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFL 314 (318)
Q Consensus 251 ~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~ 314 (318)
.||+..+..|..++..+..++..++.+|..|+..+.....++..|.+++..||.+|...+..+-
T Consensus 297 ~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~ 360 (775)
T PF10174_consen 297 SRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLE 360 (775)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 4667788888888888888888889999999999999999999999999999998887776654
No 158
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=81.78 E-value=20 Score=37.29 Aligned_cols=60 Identities=18% Similarity=0.169 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 021065 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFLGE 316 (318)
Q Consensus 257 l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~~ 316 (318)
.+.|+.++.+|+.||..|+..+..|...+..+..+-..+-.+++.||-++.-..+.-+++
T Consensus 299 ~Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm 358 (502)
T KOG0982|consen 299 KENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLRVRM 358 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667888999999999999999999999999999888888888888887665554443
No 159
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=81.71 E-value=20 Score=36.26 Aligned_cols=79 Identities=18% Similarity=0.197 Sum_probs=53.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHH
Q 021065 234 KRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVN--------------QKYDESAVNNRILKADI 299 (318)
Q Consensus 234 KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~--------------qk~~~l~~EN~~Lrael 299 (318)
-|.|.+.-|-|--|.-|. -+++-..+.++|+..|++|..+|..++ .-+..+..||..|..++
T Consensus 75 ~kirk~~e~~eglr~i~e----s~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL 150 (401)
T PF06785_consen 75 TKIRKITEKDEGLRKIRE----SVEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQL 150 (401)
T ss_pred HHHHHHHhccHHHHHHHH----HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhH
Confidence 455666666666655553 334444555667777777776665443 33556788999999999
Q ss_pred HHHHHHHHHHHHhhhhc
Q 021065 300 ETLRAKLYMFIEIFLGE 316 (318)
Q Consensus 300 ~~Lr~kl~~~e~~v~~~ 316 (318)
.+|.+.+...|+..+.+
T Consensus 151 ~~l~~e~~Ekeeesq~L 167 (401)
T PF06785_consen 151 DALQQECGEKEEESQTL 167 (401)
T ss_pred HHHHHHHhHhHHHHHHH
Confidence 99999998888776654
No 160
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=81.71 E-value=10 Score=37.36 Aligned_cols=59 Identities=14% Similarity=0.102 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021065 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFL 314 (318)
Q Consensus 256 ~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~ 314 (318)
++..|..++..+..++...+.++.+++.++..+...=..++.+..+++..|..+|..+.
T Consensus 205 eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~ 263 (312)
T smart00787 205 ELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLE 263 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555566666666666666666666666666666666666666666666666666553
No 161
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=81.59 E-value=17 Score=30.17 Aligned_cols=47 Identities=23% Similarity=0.282 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 255 AHLNELETQAGQL--RAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYM 308 (318)
Q Consensus 255 ~~l~eLE~qV~~L--~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~ 308 (318)
.++..+|.+++.| ..+-..|..+++. +.-+=+.|.+++..+.+.+..
T Consensus 49 ~Rl~~lE~~l~~LPt~~dv~~L~l~l~e-------l~G~~~~l~~~l~~v~~~~~l 97 (106)
T PF10805_consen 49 RRLQALETKLEHLPTRDDVHDLQLELAE-------LRGELKELSARLQGVSHQLDL 97 (106)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHH-------HHhHHHHHHHHHHHHHHHHHH
Confidence 3445555555555 4444444444444 444445555566666555543
No 162
>PF04642 DUF601: Protein of unknown function, DUF601; InterPro: IPR006736 This family consists of several uncharacterised plant proteins which share a conserved region.
Probab=81.52 E-value=1.5 Score=42.41 Aligned_cols=60 Identities=18% Similarity=0.186 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021065 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFL 314 (318)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~ 314 (318)
.++.++|.+|+.|+.-|..|..+|+.=..-|..+.-.-..+|+++.++..|++.+|+.-+
T Consensus 217 dRmk~aEaqvneLEvsN~DLsaKLe~gknaY~~~ieke~q~raeL~acEEkl~kmeE~Qa 276 (311)
T PF04642_consen 217 DRMKEAEAQVNELEVSNIDLSAKLEPGKNAYLAAIEKENQARAELNACEEKLKKMEEEQA 276 (311)
T ss_pred HHHHHHHhhhhheecccHHHHHhhcCCcchHHHHHhhHHHHHHHHHHHHHHHhcccHHHH
Confidence 457889999999999999999999877777777666666799999999999999887543
No 163
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=81.46 E-value=9.7 Score=42.23 Aligned_cols=21 Identities=19% Similarity=0.252 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhc
Q 021065 296 KADIETLRAKLYMFIEIFLGE 316 (318)
Q Consensus 296 rael~~Lr~kl~~~e~~v~~~ 316 (318)
.+++..|.++|+.+.+++.++
T Consensus 485 isei~qlqarikE~q~kl~~l 505 (1118)
T KOG1029|consen 485 ISEIDQLQARIKELQEKLQKL 505 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 445555556666555555443
No 164
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=81.44 E-value=23 Score=30.14 Aligned_cols=23 Identities=17% Similarity=0.492 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 021065 277 GLTDVNQKYDESAVNNRILKADI 299 (318)
Q Consensus 277 ~l~~L~qk~~~l~~EN~~Lrael 299 (318)
++..+..++..|..+|..|-.+|
T Consensus 106 e~~~~~~r~~dL~~QN~lLh~Ql 128 (132)
T PF07926_consen 106 ELSELEQRIEDLNEQNKLLHDQL 128 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444444433333
No 165
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=81.41 E-value=4.3 Score=43.44 Aligned_cols=52 Identities=21% Similarity=0.187 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMF 309 (318)
Q Consensus 258 ~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~ 309 (318)
.+|-.+|.+|..|+.-|+.++...++--..|+..+++|..++..+++++-.+
T Consensus 325 NDLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea~~a 376 (832)
T KOG2077|consen 325 NDLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEAEDA 376 (832)
T ss_pred HHHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5777888888888888888888777777777777777777776666665544
No 166
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=81.38 E-value=13 Score=37.27 Aligned_cols=17 Identities=35% Similarity=0.200 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHh
Q 021065 296 KADIETLRAKLYMFIEI 312 (318)
Q Consensus 296 rael~~Lr~kl~~~e~~ 312 (318)
|+.|..|+..|..++..
T Consensus 193 K~KIR~lq~~L~~~~~~ 209 (342)
T PF06632_consen 193 KAKIRELQRLLASAKEE 209 (342)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcc
Confidence 66777777777776654
No 167
>PF06216 RTBV_P46: Rice tungro bacilliform virus P46 protein; InterPro: IPR009347 This family consists of several Rice tungro bacilliform virus P46 proteins. The function of this family is unknown.
Probab=81.21 E-value=11 Score=36.92 Aligned_cols=54 Identities=15% Similarity=0.059 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 021065 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFLG 315 (318)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~ 315 (318)
.|+=.+|.+++....|..+|..++.. |...|..||+++.+.+.+|.-+.+.||.
T Consensus 64 ~~~y~~e~e~~sy~~e~~~l~~qvs~-------l~~~~~~~r~~~~~~~~~~eglrep~kk 117 (389)
T PF06216_consen 64 DYIYNKEFERQSYSNEWISLNDQVSH-------LQHQNSEQRQQIREMREIIEGLREPVKK 117 (389)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhhhhhhcC
Confidence 45555666666666666666555554 5566777888888888888877777764
No 168
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=80.81 E-value=8.7 Score=39.94 Aligned_cols=52 Identities=17% Similarity=0.134 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 021065 265 GQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFLGE 316 (318)
Q Consensus 265 ~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~~ 316 (318)
..++...++|..++..+..+...+..+|..|+.....++.||+.+++.-++.
T Consensus 378 k~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~ 429 (493)
T KOG0804|consen 378 KIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREKEA 429 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 3334444445555556666666777778888888888888888877766554
No 169
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=80.79 E-value=12 Score=32.40 Aligned_cols=30 Identities=27% Similarity=0.360 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 253 KQAHLNELETQAGQLRAEHSSLLKGLTDVN 282 (318)
Q Consensus 253 Kk~~l~eLE~qV~~L~~EN~~L~~~l~~L~ 282 (318)
|..-+++|..++..|+.||..|++++..-.
T Consensus 1 k~~t~EeLaaeL~kLqmENk~LKkkl~~~~ 30 (118)
T PF05812_consen 1 KDMTMEELAAELQKLQMENKALKKKLRQSV 30 (118)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 456789999999999999999999987543
No 170
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=80.70 E-value=11 Score=37.06 Aligned_cols=36 Identities=14% Similarity=0.194 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021065 279 TDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFL 314 (318)
Q Consensus 279 ~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~ 314 (318)
+.|.-++..|+.+|.+||.++..|...|..+.+.|.
T Consensus 251 E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~ 286 (294)
T KOG4571|consen 251 EALLGELEGLEKRNEELKDQASELEREIRYLKQLIL 286 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555666666666666666666666655553
No 171
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=80.57 E-value=41 Score=33.10 Aligned_cols=7 Identities=43% Similarity=0.757 Sum_probs=3.6
Q ss_pred HHHHHhh
Q 021065 39 LEKFLQE 45 (318)
Q Consensus 39 FqkfLeE 45 (318)
++.||..
T Consensus 12 L~dFL~~ 18 (312)
T smart00787 12 LQDFLNM 18 (312)
T ss_pred HHHHHHH
Confidence 4555554
No 172
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=80.46 E-value=6.2 Score=37.22 Aligned_cols=34 Identities=18% Similarity=0.238 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 266 QLRAEHSSLLKGLTDVNQKYDESAVNNRILKADI 299 (318)
Q Consensus 266 ~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael 299 (318)
.++.++..|.++.+.++.+|..|..||..|+.++
T Consensus 176 ~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i 209 (216)
T KOG1962|consen 176 KAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQI 209 (216)
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444444444443
No 173
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=80.29 E-value=11 Score=34.29 Aligned_cols=20 Identities=10% Similarity=0.180 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHhhhh
Q 021065 296 KADIETLRAKLYMFIEIFLG 315 (318)
Q Consensus 296 rael~~Lr~kl~~~e~~v~~ 315 (318)
|.+++++.++|..||..|++
T Consensus 124 r~e~ee~~~~l~~le~~~~~ 143 (175)
T PRK13182 124 RREMEEMLERLQKLEARLKK 143 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555544
No 174
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=80.23 E-value=14 Score=37.27 Aligned_cols=54 Identities=15% Similarity=0.231 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYM 308 (318)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~ 308 (318)
+.++.|....+.|+.--++|..-.+.|......|+.+-..|+.++.-|..|+.+
T Consensus 225 eeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~e 278 (365)
T KOG2391|consen 225 EEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVRE 278 (365)
T ss_pred HHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 334444444444444434444444444444444444444444444444444444
No 175
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=80.20 E-value=25 Score=27.69 Aligned_cols=62 Identities=13% Similarity=0.116 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 021065 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFLGEN 317 (318)
Q Consensus 256 ~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~~~ 317 (318)
-+.+++..+..++.+-..+..+...+.++.+.+..+=..-...+..+-..+..+.+.|+.++
T Consensus 27 ~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~~~~~~v~~~g~~v~~l~ 88 (90)
T PF06103_consen 27 TLDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKLEKVDPVFEAVADLGESVSELN 88 (90)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Confidence 36666777777777777777777777777777766666667777777777888777777654
No 176
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=80.10 E-value=30 Score=33.48 Aligned_cols=54 Identities=20% Similarity=0.217 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021065 260 LETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIF 313 (318)
Q Consensus 260 LE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v 313 (318)
+..-+-....+|..+.+++...++.+..+..+...|++++..|+.......++|
T Consensus 177 ~~~~l~~~~~~N~~m~kei~~~re~i~el~e~I~~L~~eV~~L~~~~~~~Re~i 230 (258)
T PF15397_consen 177 MQPALLQRTLENQVMQKEIVQFREEIDELEEEIPQLRAEVEQLQAQAQDPREVI 230 (258)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHh
Confidence 334455667899999999999999999999999999999999999887554443
No 177
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=79.91 E-value=50 Score=31.30 Aligned_cols=42 Identities=12% Similarity=0.240 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 264 AGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (318)
Q Consensus 264 V~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~k 305 (318)
+..++.|+..++.++..|..++..+...|..|..++..|..+
T Consensus 211 ~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~ 252 (312)
T PF00038_consen 211 LESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQR 252 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHH
Confidence 334444555555555555555555555555555555444433
No 178
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=79.67 E-value=31 Score=30.01 Aligned_cols=58 Identities=10% Similarity=0.191 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 254 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIE 311 (318)
Q Consensus 254 k~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~ 311 (318)
.++|+.|..++++...-......++..++..+..+..+-..+..-+..|..||..+|.
T Consensus 67 sqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie~ 124 (126)
T PF07889_consen 67 SQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIEE 124 (126)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3677888888888888888888888888877777777777777777777777776653
No 179
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=79.55 E-value=17 Score=38.43 Aligned_cols=83 Identities=17% Similarity=0.234 Sum_probs=64.5
Q ss_pred CchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 229 DSVDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYM 308 (318)
Q Consensus 229 d~~e~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~ 308 (318)
++.+--|.+|+.. --..+.+|-.+.+.+.+..+...+.+-..|--++...+.++..+..+|+.++.+.+.|..+++.
T Consensus 26 ~e~ef~rl~k~fe---d~~ek~~r~~ae~~~~~~~L~Ka~tk~~~ldvklkha~~~vda~ik~rr~ae~d~~~~E~~i~~ 102 (604)
T KOG3564|consen 26 NEDEFIRLRKDFE---DFEEKWKRTDAELGKYKDLLAKAETKRSALDVKLKHARNQVDAEIKRRRRAEADCEKLETQIQL 102 (604)
T ss_pred cHHHHHHHHHHHH---HHHHHHhhhhHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 3344445555433 2333444555667777778888888888999999999999999999999999999999999999
Q ss_pred HHHhhh
Q 021065 309 FIEIFL 314 (318)
Q Consensus 309 ~e~~v~ 314 (318)
+.|+++
T Consensus 103 i~d~l~ 108 (604)
T KOG3564|consen 103 IKDMLK 108 (604)
T ss_pred HHHHHh
Confidence 999876
No 180
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=79.55 E-value=2.5 Score=32.35 Aligned_cols=29 Identities=17% Similarity=0.345 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 270 EHSSLLKGLTDVNQKYDESAVNNRILKAD 298 (318)
Q Consensus 270 EN~~L~~~l~~L~qk~~~l~~EN~~Lrae 298 (318)
|...|+.++.+|..+...|+.||..||+.
T Consensus 15 EVevLK~~I~eL~~~n~~Le~EN~~Lk~~ 43 (59)
T PF01166_consen 15 EVEVLKEQIAELEERNSQLEEENNLLKQN 43 (59)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33445555555555555666777777654
No 181
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=79.46 E-value=21 Score=31.39 Aligned_cols=52 Identities=15% Similarity=-0.002 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 021065 264 AGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFLG 315 (318)
Q Consensus 264 V~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~ 315 (318)
+......+..+..+|..|......-...-..|+.++....+.+..-|..|.+
T Consensus 35 ~~~~~~~l~~~~~qL~~l~~~a~~~~~~Q~~Lr~~~~~~~~~l~~re~~i~r 86 (135)
T TIGR03495 35 LKAQQAELASKANQLIVLLALAKRNEEAQAQLRQQLAQARALLAQREQRIER 86 (135)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444445555555555555554444444
No 182
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=79.38 E-value=15 Score=39.21 Aligned_cols=56 Identities=18% Similarity=0.177 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFI 310 (318)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e 310 (318)
+.+.+|+.+++.|..+...+..++..+..++..+..+....+.+...|...++..+
T Consensus 328 ~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~ 383 (594)
T PF05667_consen 328 QELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKK 383 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444444444444444333
No 183
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=79.35 E-value=24 Score=40.25 Aligned_cols=58 Identities=21% Similarity=0.276 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 253 KQAHLNELETQAGQLRAEH-SSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFI 310 (318)
Q Consensus 253 Kk~~l~eLE~qV~~L~~EN-~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e 310 (318)
+|..+..|+.+|..++.+- ..|..++..+..++..|..|+..|..++..|+.++..+.
T Consensus 370 ~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~ 428 (1074)
T KOG0250|consen 370 LKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVK 428 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555666666555543 555555555555555555555555555555555554443
No 184
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=79.11 E-value=26 Score=39.94 Aligned_cols=53 Identities=21% Similarity=0.247 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 021065 263 QAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFLG 315 (318)
Q Consensus 263 qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~ 315 (318)
.++.|..|..+|..++..+.+++..+..+-..|+.++..|+++|..++..|+.
T Consensus 816 e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~ 868 (1174)
T KOG0933|consen 816 EYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKK 868 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHH
Confidence 44556666666777777777777777777777788888888888777776654
No 185
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=79.08 E-value=13 Score=33.87 Aligned_cols=18 Identities=22% Similarity=0.124 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHhhhhc
Q 021065 299 IETLRAKLYMFIEIFLGE 316 (318)
Q Consensus 299 l~~Lr~kl~~~e~~v~~~ 316 (318)
+..|+..+..+-+.+-|.
T Consensus 137 i~~~~~~~~~~~~~anrw 154 (188)
T PF03962_consen 137 IEKLKEEIKIAKEAANRW 154 (188)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444443
No 186
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=78.83 E-value=46 Score=29.41 Aligned_cols=59 Identities=20% Similarity=0.280 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021065 256 HLNELETQAGQLRAEHSSLLKGLTDVNQ------------KYDESAVNNRILKADIETLRAKLYMFIEIFL 314 (318)
Q Consensus 256 ~l~eLE~qV~~L~~EN~~L~~~l~~L~q------------k~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~ 314 (318)
.+..+..++..+..+...+...+..|+. .|.....+-..|+..+..|+.++..++..|+
T Consensus 106 ~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~~~~P~ll~Dy~~~~~~~~~l~~~i~~l~rk~~~l~~~i~ 176 (177)
T PF13870_consen 106 ELAKLREELYRVKKERDKLRKQNKKLRQQGGLLGVPALLRDYDKTKEEVEELRKEIKELERKVEILEMRIK 176 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3344444444444444444444444433 2555566666777777777777777776664
No 187
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=78.76 E-value=13 Score=40.05 Aligned_cols=15 Identities=13% Similarity=0.295 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHHHH
Q 021065 270 EHSSLLKGLTDVNQK 284 (318)
Q Consensus 270 EN~~L~~~l~~L~qk 284 (318)
++.+|..++..|..+
T Consensus 444 ~~ee~k~eie~L~~~ 458 (652)
T COG2433 444 ELEELKREIEKLESE 458 (652)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 188
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=78.71 E-value=14 Score=37.39 Aligned_cols=31 Identities=16% Similarity=0.212 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 021065 285 YDESAVNNRILKADIETLRAKLYMFIEIFLG 315 (318)
Q Consensus 285 ~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~ 315 (318)
+..+...-..|+.++..|..++..+++.+.+
T Consensus 377 ~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~ 407 (451)
T PF03961_consen 377 LKKLKEKKKELKEELKELKEELKELKEELER 407 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444444555555555555555544443
No 189
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=78.64 E-value=11 Score=36.82 Aligned_cols=29 Identities=28% Similarity=0.399 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 254 QAHLNELETQAGQLRAEHSSLLKGLTDVN 282 (318)
Q Consensus 254 k~~l~eLE~qV~~L~~EN~~L~~~l~~L~ 282 (318)
.+.|.+||.+...|..|...|..+...+.
T Consensus 63 ~~eL~~LE~e~~~l~~el~~le~e~~~l~ 91 (314)
T PF04111_consen 63 LQELEELEKEREELDQELEELEEELEELD 91 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444433
No 190
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=78.63 E-value=49 Score=32.33 Aligned_cols=51 Identities=18% Similarity=0.214 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLY 307 (318)
Q Consensus 257 l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~ 307 (318)
...|+..+..|+.+...|...+..+..-+..+......|+.++..|++...
T Consensus 151 ~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~ 201 (325)
T PF08317_consen 151 KEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVE 201 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455555555555555555555555555444444444444444444433
No 191
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=78.32 E-value=18 Score=36.04 Aligned_cols=46 Identities=17% Similarity=0.339 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR 303 (318)
Q Consensus 258 ~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr 303 (318)
..|..-+...+.+|..|..++..|++++.++.-+|..||.++..+|
T Consensus 68 ~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r 113 (319)
T PF09789_consen 68 KNLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQR 113 (319)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhh
Confidence 4555667777778888888888888888888777777777555543
No 192
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=78.29 E-value=20 Score=33.03 Aligned_cols=10 Identities=30% Similarity=0.408 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 021065 302 LRAKLYMFIE 311 (318)
Q Consensus 302 Lr~kl~~~e~ 311 (318)
++.++..++.
T Consensus 91 ~k~rl~~~ek 100 (201)
T PF13851_consen 91 LKARLKELEK 100 (201)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 193
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=78.24 E-value=24 Score=33.31 Aligned_cols=44 Identities=25% Similarity=0.333 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 260 LETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR 303 (318)
Q Consensus 260 LE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr 303 (318)
|+++...+..+-..|..+++....++..+..++..|+.+.+.+.
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~ 192 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQ 192 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 44444444444455555555555555555555555555554443
No 194
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=78.06 E-value=12 Score=37.52 Aligned_cols=57 Identities=16% Similarity=0.190 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021065 254 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFL 314 (318)
Q Consensus 254 k~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~ 314 (318)
.+|++.|+.+++.|+.+...|..++.... .....-..|..++..+..++..+++.++
T Consensus 241 ~~~~~~l~~~~~~~~~~i~~l~~~l~~~~----k~~~k~~~~~~q~~~~~k~~~~~~~~~~ 297 (406)
T PF02388_consen 241 KEYLESLQEKLEKLEKEIEKLEEKLEKNP----KKKNKLKELEEQLASLEKRIEEAEELIA 297 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-T----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCc----chhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777777777777777665544 3444555678888888888888888765
No 195
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=78.03 E-value=7.8 Score=39.92 Aligned_cols=57 Identities=18% Similarity=0.092 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021065 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIF 313 (318)
Q Consensus 257 l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v 313 (318)
...+-.|...|+.|-..+.++++...-.++.|..||..|+.+...+++..+++..-|
T Consensus 29 ~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~~~a~~~~~t~~~ 85 (459)
T KOG0288|consen 29 QSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVREEATEKTLTVDV 85 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356667777777777788888888888888888888888777766666666655444
No 196
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=78.00 E-value=33 Score=33.79 Aligned_cols=84 Identities=17% Similarity=0.215 Sum_probs=48.6
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHH------------
Q 021065 231 VDDKRARRMLSNRESARRSRRRKQAHLNELE--------------TQAGQLRAEHSSLLKGLTDVNQK------------ 284 (318)
Q Consensus 231 ~e~KR~RR~lsNRESArRSR~RKk~~l~eLE--------------~qV~~L~~EN~~L~~~l~~L~qk------------ 284 (318)
....++.-+..+-+--++-|..|+-+|+.|| .+...|+.||+.|......|...
T Consensus 15 ~aLqKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke 94 (307)
T PF10481_consen 15 RALQKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKE 94 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhH
Confidence 3444444455554444555555555555554 34556777777777666655433
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021065 285 --YDESAVNNRILKADIETLRAKLYMFIEIFL 314 (318)
Q Consensus 285 --~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~ 314 (318)
+..++......|.+++.|...|+.+..-+-
T Consensus 95 ~qv~~lEgQl~s~Kkqie~Leqelkr~KsELE 126 (307)
T PF10481_consen 95 SQVNFLEGQLNSCKKQIEKLEQELKRCKSELE 126 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666667777777777776665443
No 197
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=77.95 E-value=14 Score=30.74 Aligned_cols=56 Identities=20% Similarity=0.216 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021065 257 LNELETQAGQLRAEHSSLLKGL-TDVNQKYDESAVNNRILKADIETLRAKLYMFIEI 312 (318)
Q Consensus 257 l~eLE~qV~~L~~EN~~L~~~l-~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~ 312 (318)
...++..+..++.|...|...| ...+.-......+...+..+...|..++...+.+
T Consensus 10 r~~ae~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~k~~~le~~l~e~~~~ 66 (100)
T PF06428_consen 10 REEAEQEKEQIESELEELTASLFEEANKMVADARRERAALEEKNEQLEKQLKEKEAL 66 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHCHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555554 3344444444434444444444444444444333
No 198
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=77.87 E-value=33 Score=35.86 Aligned_cols=74 Identities=19% Similarity=0.171 Sum_probs=40.7
Q ss_pred HHHHhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021065 238 RMLSNRESARRSRRRKQAH----LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIF 313 (318)
Q Consensus 238 R~lsNRESArRSR~RKk~~----l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v 313 (318)
-..+|-++++.+=.||.+. ++.++.+++.++.+|..|.+.......++.. .++.++..+..+..++..|++-|
T Consensus 368 ~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~---~~e~~~~~~~s~d~~I~dLqEQl 444 (493)
T KOG0804|consen 368 QESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKE---LEEREKEALGSKDEKITDLQEQL 444 (493)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666543 4456666666776676666655554444433 33444444444555555555544
Q ss_pred h
Q 021065 314 L 314 (318)
Q Consensus 314 ~ 314 (318)
+
T Consensus 445 r 445 (493)
T KOG0804|consen 445 R 445 (493)
T ss_pred H
Confidence 4
No 199
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=77.75 E-value=3.2 Score=41.69 Aligned_cols=30 Identities=13% Similarity=0.175 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKY 285 (318)
Q Consensus 256 ~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~ 285 (318)
+.-.|..+-..|+.||+.|+.+++.|....
T Consensus 33 e~~aLr~EN~~LKkEN~~Lk~eVerLE~e~ 62 (420)
T PF07407_consen 33 ENFALRMENHSLKKENNDLKIEVERLENEM 62 (420)
T ss_pred hhhhHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 445666666677777777777776664443
No 200
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=77.51 E-value=10 Score=31.49 Aligned_cols=33 Identities=15% Similarity=0.321 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 251 RRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQ 283 (318)
Q Consensus 251 ~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~q 283 (318)
.+.++++.+++.+++.|+.+|..|..++..|+.
T Consensus 30 ~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 30 WRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 344566667777777777777777777766554
No 201
>PHA02562 46 endonuclease subunit; Provisional
Probab=77.47 E-value=46 Score=33.99 Aligned_cols=27 Identities=37% Similarity=0.551 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 282 NQKYDESAVNNRILKADIETLRAKLYM 308 (318)
Q Consensus 282 ~qk~~~l~~EN~~Lrael~~Lr~kl~~ 308 (318)
+.++..+..+...|+.++..|+.++..
T Consensus 219 ~~e~~~l~~~~~~l~~~l~~l~~~i~~ 245 (562)
T PHA02562 219 QNKYDELVEEAKTIKAEIEELTDELLN 245 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444433
No 202
>PF15058 Speriolin_N: Speriolin N terminus
Probab=77.32 E-value=5.7 Score=36.99 Aligned_cols=34 Identities=26% Similarity=0.212 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKAD 298 (318)
Q Consensus 257 l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrae 298 (318)
++.|.++++.|-.||++|++++. +..||.+||.-
T Consensus 7 yeGlrhqierLv~ENeeLKKlVr--------LirEN~eLksa 40 (200)
T PF15058_consen 7 YEGLRHQIERLVRENEELKKLVR--------LIRENHELKSA 40 (200)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHH--------HHHHHHHHHHH
Confidence 46677888888899999888876 45567777654
No 203
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=77.28 E-value=22 Score=31.76 Aligned_cols=37 Identities=16% Similarity=0.290 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 268 RAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (318)
Q Consensus 268 ~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~ 304 (318)
..++..+..+++.++.++...+.|...||.|.+.|..
T Consensus 153 ~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ 189 (192)
T PF05529_consen 153 KEENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQK 189 (192)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455566677777777777777777777777776654
No 204
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=77.14 E-value=12 Score=35.72 Aligned_cols=44 Identities=16% Similarity=0.167 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 252 RKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRIL 295 (318)
Q Consensus 252 RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~L 295 (318)
-=+.+|++|+.+|..|+.+++++..++..+.++-..+-.+=..+
T Consensus 58 ~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r 101 (263)
T PRK10803 58 QLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSL 101 (263)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44788999999999999999999999999988877766554443
No 205
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=77.12 E-value=11 Score=36.09 Aligned_cols=41 Identities=24% Similarity=0.217 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR 303 (318)
Q Consensus 256 ~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr 303 (318)
+..+||.++..+..++..|+.++. .|..+|-.|=.++.-|+
T Consensus 94 Rn~ELE~elr~~~~~~~~L~~Ev~-------~L~~DN~kLYEKiRylq 134 (248)
T PF08172_consen 94 RNAELEEELRKQQQTISSLRREVE-------SLRADNVKLYEKIRYLQ 134 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHh
Confidence 346666666665555555544443 45566665544444443
No 206
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=76.92 E-value=16 Score=29.87 Aligned_cols=42 Identities=17% Similarity=0.239 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 266 QLRAEHSSLLKGLTDVNQ------KYDESAVNNRILKADIETLRAKLY 307 (318)
Q Consensus 266 ~L~~EN~~L~~~l~~L~q------k~~~l~~EN~~Lrael~~Lr~kl~ 307 (318)
.+..+|..|..++..|+. +......||-.|+.++..|+.-..
T Consensus 21 ~~~~e~~~L~eEI~~Lr~qve~nPevtr~A~EN~rL~ee~rrl~~f~~ 68 (86)
T PF12711_consen 21 YLEEENEALKEEIQLLREQVEHNPEVTRFAMENIRLREELRRLQSFYV 68 (86)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555543 455778899999998888887653
No 207
>PF11577 NEMO: NF-kappa-B essential modulator NEMO; InterPro: IPR021063 This entry represents a conserved domain found at the N-terminal of NF-kappa-B essential modulator (NEMO) and optineurin proteins. NEMO is a regulatory protein which is part of the IKK complex along with the catalytic IKKalpha and beta kinases. The IKK complex phosphorylates IkappaB targeting it for degradation which results in the release of NF-kappaB which initiates the inflammatory response, cell proliferation or cell differentiation []. NEMO activates the IKK complex's activity by associating with the unphosphorylated IKK kinase C termini. The core domain of NEMO is a dimer which binds to two fragments of IKK []. ; PDB: 3BRT_B 3BRV_D.
Probab=76.82 E-value=26 Score=27.47 Aligned_cols=59 Identities=20% Similarity=0.225 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 021065 259 ELETQAGQLRAEHSSLLKGLT----DVNQKYDESAVNNRILKADIETLRAKLYMFIEIFLGEN 317 (318)
Q Consensus 259 eLE~qV~~L~~EN~~L~~~l~----~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~~~ 317 (318)
++..++..|-.||..|+..+. .++++|..+..=-..-+.+..-|..|+..+.+.|.+++
T Consensus 3 e~~~~l~~LL~EN~~LKealrQ~N~~Mker~e~l~~wqe~~~~e~~~~~~kf~Ear~lv~~L~ 65 (68)
T PF11577_consen 3 EMQQQLQELLQENQDLKEALRQNNQAMKERFEELLAWQEKQKEEREFLERKFQEARELVERLK 65 (68)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344567777777777665543 56677777777777777788888888888888877653
No 208
>PRK00846 hypothetical protein; Provisional
Probab=76.54 E-value=19 Score=28.82 Aligned_cols=51 Identities=27% Similarity=0.257 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 254 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (318)
Q Consensus 254 k~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~ 304 (318)
.++|.+||.++...+.-...|...+....+.+..+..+=+.|+.++.++..
T Consensus 12 e~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~~ 62 (77)
T PRK00846 12 EARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVRS 62 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 367889999999888888888888888888888888888888888877763
No 209
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=76.45 E-value=43 Score=38.32 Aligned_cols=73 Identities=14% Similarity=0.201 Sum_probs=51.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 239 MLSNRESARRSRRRKQAHLNELETQA-GQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIE 311 (318)
Q Consensus 239 ~lsNRESArRSR~RKk~~l~eLE~qV-~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~ 311 (318)
...+=...+....+....+.+++.+. +.+..+..++..++..|.++...++..+..|+.+...+..++..-++
T Consensus 363 ~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~e 436 (1074)
T KOG0250|consen 363 IENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEE 436 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 34444456666677777777777777 67777777777777777777777777777777777777777665544
No 210
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=76.41 E-value=14 Score=34.35 Aligned_cols=60 Identities=15% Similarity=0.124 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 021065 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFLGE 316 (318)
Q Consensus 257 l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~~ 316 (318)
|..||.++..........-.++..+..++..+..+-.....++..+..++..+|+.++.+
T Consensus 94 i~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~ 153 (237)
T PF00261_consen 94 IEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSV 153 (237)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHH
Confidence 444444544444444444444444444444444444444455555555555555544433
No 211
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]
Probab=76.36 E-value=45 Score=31.39 Aligned_cols=38 Identities=8% Similarity=0.138 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 021065 279 TDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFLGE 316 (318)
Q Consensus 279 ~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~~ 316 (318)
..|.++....+-|-..|++++.+|+---..-|.|++.+
T Consensus 115 ~~L~~~k~kqe~e~s~L~k~vtAL~iIk~~YEqM~~~~ 152 (229)
T KOG1319|consen 115 QFLHKEKKKQEEEVSTLRKDVTALKIIKVNYEQMVKAH 152 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35566666777788888888888888777777777643
No 212
>PLN02678 seryl-tRNA synthetase
Probab=76.15 E-value=36 Score=35.26 Aligned_cols=56 Identities=18% Similarity=0.172 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 021065 260 LETQAGQLRAEHSSLLKGLTDVN---QKYDESAVNNRILKADIETLRAKLYMFIEIFLG 315 (318)
Q Consensus 260 LE~qV~~L~~EN~~L~~~l~~L~---qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~ 315 (318)
|..+++.|+.+-..+.+++..+. .....+..+=+.|+.++..|..++..+++.+..
T Consensus 45 l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~ 103 (448)
T PLN02678 45 RQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEKEAEVQEAKAALDA 103 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444321 112234445566667777777777666665543
No 213
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=76.13 E-value=18 Score=27.15 Aligned_cols=43 Identities=19% Similarity=0.250 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021065 272 SSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFL 314 (318)
Q Consensus 272 ~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~ 314 (318)
..+..++..++.++..+..+|..|+.++..|+.--..+|+..+
T Consensus 20 ~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~~AR 62 (80)
T PF04977_consen 20 YQLNQEIAELQKEIEELKKENEELKEEIERLKNDPDYIEKVAR 62 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 4455556666666666777777777777777444444454444
No 214
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=76.09 E-value=21 Score=29.56 Aligned_cols=56 Identities=18% Similarity=0.255 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021065 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEI 312 (318)
Q Consensus 256 ~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~ 312 (318)
.|.+++.+.-.+...|.+|..++..+..+...-.. +-.++.++..+...++.....
T Consensus 18 ~L~~v~~~~l~l~~~n~el~~el~~l~~~~~~~~~-~~~~~~~l~~~~~~lk~~r~~ 73 (106)
T PF05837_consen 18 KLSDVEKKRLRLKRRNQELAQELLELAEKQKSQRE-DEELSEKLEKLEKELKKSRQR 73 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-chHHHHHHHHHHHHHHHHHHH
Confidence 34555555556666666666666655554443333 455666666666666655443
No 215
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=76.05 E-value=41 Score=28.64 Aligned_cols=30 Identities=27% Similarity=0.348 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 277 GLTDVNQKYDESAVNNRILKADIETLRAKL 306 (318)
Q Consensus 277 ~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl 306 (318)
.|..++.++..+..+-..|+..+...+..|
T Consensus 60 ~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l 89 (132)
T PF07926_consen 60 ELQQLREELQELQQEINELKAEAESAKAEL 89 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333
No 216
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=76.01 E-value=14 Score=38.69 Aligned_cols=52 Identities=15% Similarity=0.222 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKL 306 (318)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl 306 (318)
..|++-+.+.+.|+.+...|+.+++.+..+...++.+=..|..++..|+.++
T Consensus 69 SALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 69 HATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 4456666677777777777766666655555555555555555555555555
No 217
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=75.94 E-value=1.6 Score=36.21 Aligned_cols=45 Identities=18% Similarity=0.346 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADI 299 (318)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael 299 (318)
.||..|...+..|..+|..|..++..|..++..+...+..|+..+
T Consensus 25 ~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l 69 (131)
T PF05103_consen 25 DFLDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQRAL 69 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCT---------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhh
Confidence 688888999999999999888888888777777666666655544
No 218
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=75.91 E-value=47 Score=35.47 Aligned_cols=64 Identities=13% Similarity=0.165 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 021065 254 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFLGEN 317 (318)
Q Consensus 254 k~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~~~ 317 (318)
.++++.++..|+.|..-+..+..++.....+...+..+=..|+.+...++.|-+.+.....++|
T Consensus 44 ~~~l~~~~~~v~~l~~~~~~~~~~l~~~~~~t~~ll~~~~~L~~~~~~~~~k~~ll~~f~~~f~ 107 (618)
T PF06419_consen 44 NRQLKRLQSDVDKLNSSCDQMQDRLSAAKSETSDLLEEASELREQKEELELKKKLLDAFLERFT 107 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3578888889999999999999999988888888999999999999999999888888777765
No 219
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=75.79 E-value=44 Score=38.18 Aligned_cols=21 Identities=19% Similarity=0.169 Sum_probs=12.9
Q ss_pred HHHHHHHHhhhhhhHHHHHHh
Q 021065 112 DEYRAYLKTKLDLACAAVALR 132 (318)
Q Consensus 112 ~~y~a~Lk~kL~~~~AAva~~ 132 (318)
+.|+=+-|...-.-.||.-|-
T Consensus 240 ei~klLekGs~kRrtAaTl~N 260 (1041)
T KOG0243|consen 240 EIYKLLEKGSKKRRTAATLMN 260 (1041)
T ss_pred HHHHHHHhhhhHhHHHHHHhh
Confidence 466666666666666666553
No 220
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=75.77 E-value=25 Score=27.99 Aligned_cols=52 Identities=19% Similarity=0.181 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 260 LETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIE 311 (318)
Q Consensus 260 LE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~ 311 (318)
||.++..|+...+.-...++.|+..+.+....-..++.++..|..|++.++.
T Consensus 6 lE~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~~kl~~~~~ 57 (72)
T COG2900 6 LEARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLTEKLKDLQP 57 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4444444444444434444444444444444555566777777777776654
No 221
>PRK14127 cell division protein GpsB; Provisional
Probab=75.76 E-value=8 Score=32.82 Aligned_cols=26 Identities=12% Similarity=0.138 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 255 AHLNELETQAGQLRAEHSSLLKGLTD 280 (318)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~ 280 (318)
.+|+++-.....|..||..|..++..
T Consensus 30 ~FLd~V~~dye~l~~e~~~Lk~e~~~ 55 (109)
T PRK14127 30 KFLDDVIKDYEAFQKEIEELQQENAR 55 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445555555444444443
No 222
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=75.64 E-value=5.1 Score=41.41 Aligned_cols=57 Identities=18% Similarity=0.112 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021065 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFL 314 (318)
Q Consensus 258 ~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~ 314 (318)
+.|..+|..|..+|..|+.+++.+.-++..+..||+-|+.--.++++|...-|+.|.
T Consensus 46 e~l~~rv~slsq~Nkvlk~elet~k~kcki~qeenr~l~~Asv~IQaraeqeeEfis 102 (552)
T KOG2129|consen 46 ESLGARVSSLSQRNKVLKGELETLKGKCKIMQEENRPLLLASVEIQARAEQEEEFIS 102 (552)
T ss_pred HHHHHHHHHHHhhhhhhhhhHHhhhhHHHHHHhcCchhhhhhhHHhhccchHHHHHH
Confidence 568888999999999999999999999999999999998888888888777777665
No 223
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=75.59 E-value=33 Score=36.56 Aligned_cols=63 Identities=19% Similarity=0.350 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 245 SARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLY 307 (318)
Q Consensus 245 SArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~ 307 (318)
.+.+.|..=...+.+++..+..|++|...++.++..+..+...|..||..|+.++..++..+.
T Consensus 131 ~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld 193 (546)
T KOG0977|consen 131 KAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLD 193 (546)
T ss_pred HHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 333334434444556666677777777777777777777777777777777777777776554
No 224
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=75.50 E-value=39 Score=38.54 Aligned_cols=57 Identities=19% Similarity=0.276 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021065 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEI 312 (318)
Q Consensus 256 ~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~ 312 (318)
++.++..++..|+.....+..++..+.+.+..+..+-..++.++..++.++..++..
T Consensus 440 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~ 496 (1163)
T COG1196 440 ELEELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEARLDRLEAE 496 (1163)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444445555555555555555555555555555555666666555555554
No 225
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=75.50 E-value=55 Score=28.55 Aligned_cols=51 Identities=22% Similarity=0.355 Sum_probs=29.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 238 RMLSNRESARRSRRRKQAHLNELET-------QAGQLRAEHSSLLKGLTDVNQKYDES 288 (318)
Q Consensus 238 R~lsNRESArRSR~RKk~~l~eLE~-------qV~~L~~EN~~L~~~l~~L~qk~~~l 288 (318)
+++..-+.+...-.+|++.++.|+. +|..|+.+...+..++..+..++..+
T Consensus 114 ~~~~~~~~~~~~l~~k~~~~~kl~~~~~~~~~ki~~l~~~i~~~e~~~~~~~~~~~~i 171 (218)
T cd07596 114 DALLTLQSLKKDLASKKAQLEKLKAAPGIKPAKVEELEEELEEAESALEEARKRYEEI 171 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666666666666642 45566666666666666655555544
No 226
>PF15030 DUF4527: Protein of unknown function (DUF4527)
Probab=75.44 E-value=69 Score=31.18 Aligned_cols=87 Identities=17% Similarity=0.141 Sum_probs=64.8
Q ss_pred chHHHHHHHHHHhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 230 SVDDKRARRMLSNRESARRSRRRKQAHLN-ELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYM 308 (318)
Q Consensus 230 ~~e~KR~RR~lsNRESArRSR~RKk~~l~-eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~ 308 (318)
.+|.|-.-|.+-.+.---++..|-|.-.- +|....++-..-..+|..++++|+++.+++...-.=||+.+..|-.|+..
T Consensus 11 eed~rL~v~~LhHQvlTLqcQLRDQ~~ahreLQas~dEa~~L~~~L~~kl~eLqkk~~Ea~lAVtPLKak~AslV~kc~e 90 (277)
T PF15030_consen 11 EEDLRLRVQQLHHQVLTLQCQLRDQGSAHRELQASRDEATRLQDELQGKLEELQKKQHEANLAVTPLKAKLASLVQKCRE 90 (277)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhccchHHHHHHHHHHHHHH
Confidence 34556555777777777777777776555 67766666666667788888888888888888888889999888888877
Q ss_pred HHHhhhhc
Q 021065 309 FIEIFLGE 316 (318)
Q Consensus 309 ~e~~v~~~ 316 (318)
=...|.++
T Consensus 91 Rn~Li~~l 98 (277)
T PF15030_consen 91 RNRLITHL 98 (277)
T ss_pred HHHHHHHH
Confidence 66666544
No 227
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=75.41 E-value=26 Score=34.75 Aligned_cols=26 Identities=35% Similarity=0.464 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 270 EHSSLLKGLTDVNQKYDESAVNNRIL 295 (318)
Q Consensus 270 EN~~L~~~l~~L~qk~~~l~~EN~~L 295 (318)
|...|..++.+++++++.+..||..|
T Consensus 235 EIt~LlsqivdlQ~r~k~~~~EnEeL 260 (306)
T PF04849_consen 235 EITSLLSQIVDLQQRCKQLAAENEEL 260 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 33444444444444555444444444
No 228
>PRK04863 mukB cell division protein MukB; Provisional
Probab=75.33 E-value=43 Score=39.62 Aligned_cols=20 Identities=5% Similarity=-0.007 Sum_probs=11.1
Q ss_pred HHHHHHHHhHHHHHHHHHHH
Q 021065 234 KRARRMLSNRESARRSRRRK 253 (318)
Q Consensus 234 KR~RR~lsNRESArRSR~RK 253 (318)
++.+.+.+.++.|++.+.-+
T Consensus 321 ~rL~kLEkQaEkA~kyleL~ 340 (1486)
T PRK04863 321 EAESDLEQDYQAASDHLNLV 340 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445556666666655543
No 229
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=75.14 E-value=62 Score=29.01 Aligned_cols=47 Identities=21% Similarity=0.306 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 259 ELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (318)
Q Consensus 259 eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~k 305 (318)
+|..+|..|+.+|..|...+..+..+...+......|+.+...|..+
T Consensus 93 ~L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~l~~e~~~l~er 139 (158)
T PF09744_consen 93 DLQSQVEQLEEENRQLELKLKNLSDQSSRLEEREAELKKEYNRLHER 139 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555555555555444
No 230
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=75.02 E-value=15 Score=30.14 Aligned_cols=8 Identities=38% Similarity=0.547 Sum_probs=3.6
Q ss_pred HHHHHHHH
Q 021065 261 ETQAGQLR 268 (318)
Q Consensus 261 E~qV~~L~ 268 (318)
|.+|..|.
T Consensus 33 E~KV~~LK 40 (87)
T PF12709_consen 33 ETKVKALK 40 (87)
T ss_pred HHHHHHHH
Confidence 34444444
No 231
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=74.91 E-value=51 Score=31.19 Aligned_cols=36 Identities=14% Similarity=0.130 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 274 LLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMF 309 (318)
Q Consensus 274 L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~ 309 (318)
|..++..+...+..+..+...-..+...|+.+|..+
T Consensus 80 Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~a 115 (246)
T PF00769_consen 80 LEQELREAEAEIARLEEESERKEEEAEELQEELEEA 115 (246)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444333
No 232
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=74.88 E-value=31 Score=32.72 Aligned_cols=26 Identities=27% Similarity=0.498 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 257 LNELETQAGQLRAEHSSLLKGLTDVN 282 (318)
Q Consensus 257 l~eLE~qV~~L~~EN~~L~~~l~~L~ 282 (318)
+..|+.++..|+..|..|..++.++.
T Consensus 225 ~~~l~~el~~l~~~~~~Le~~l~~le 250 (312)
T PF00038_consen 225 IQSLQAELESLRAKNASLERQLRELE 250 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhhhhhhccccchhhhhhhHHHHH
Confidence 34444444444444444444444443
No 233
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=74.77 E-value=35 Score=26.88 Aligned_cols=60 Identities=22% Similarity=0.295 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhhhh
Q 021065 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNR---------------ILKADIETLRAKLYMFIEIFLG 315 (318)
Q Consensus 256 ~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~---------------~Lrael~~Lr~kl~~~e~~v~~ 315 (318)
.++.+..++..|...-..|..++..+..++..+..-+. .+|.++..|..++..+++.+.+
T Consensus 15 ~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~~~~~~~~~~~~~y~~KL~~ikkrm~~l~~~l~~lk~R~~~ 89 (92)
T PF14712_consen 15 DLDRLDQQLQELRQSQEELLQQIDRLNEKLKELNEVEQINEPFDLDPYVKKLVNIKKRMSNLHERLQKLKKRADK 89 (92)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666777777777666777777766666655443111 2355555555555555554443
No 234
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=74.40 E-value=52 Score=29.75 Aligned_cols=55 Identities=22% Similarity=0.258 Sum_probs=32.4
Q ss_pred chHHHHHHHHHHhHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 230 SVDDKRARRMLSNRESARRSRRRK-----QAHLNELETQAGQLRAEHSSLLKGLTDVNQK 284 (318)
Q Consensus 230 ~~e~KR~RR~lsNRESArRSR~RK-----k~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk 284 (318)
..+.-|.++-++.+.-++++|.-- ..-.++||.-+.-++.|...+++++..++.+
T Consensus 40 EeeIErkKmeVrekVq~~LgrveEetkrLa~ireeLE~l~dP~RkEv~~vRkkID~vNre 99 (159)
T PF04949_consen 40 EEEIERKKMEVREKVQAQLGRVEEETKRLAEIREELEVLADPMRKEVEMVRKKIDSVNRE 99 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHH
Confidence 344556667778888888887522 2223455555555566666666665555444
No 235
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=74.39 E-value=29 Score=32.14 Aligned_cols=55 Identities=24% Similarity=0.328 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 256 HLNELETQAGQLRAEHSSLLKGLTDV------------------NQKYDESAVNNRILKADIETLRAKLYMFI 310 (318)
Q Consensus 256 ~l~eLE~qV~~L~~EN~~L~~~l~~L------------------~qk~~~l~~EN~~Lrael~~Lr~kl~~~e 310 (318)
|...|+..+..|+.+...+++++..+ .+++..+...|-.+...+..|+..|..+.
T Consensus 137 ~n~~Le~~~~~le~~l~~~k~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~ 209 (221)
T PF05700_consen 137 HNEQLEAMLKRLEKELAKLKKEIEEVNRERKRRQEEAGEELRYLEQRWKELVSKNLEIEVACEELEQEIEQLK 209 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555444 33444444555555555555554444443
No 236
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=74.31 E-value=44 Score=30.98 Aligned_cols=52 Identities=15% Similarity=0.227 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 260 LETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIE 311 (318)
Q Consensus 260 LE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~ 311 (318)
+-.-...+..||..|+.+|..+.+++..|...+..|..+-..|+..--.+|.
T Consensus 154 l~e~~~~i~~EN~~L~k~L~~l~~e~~~L~~~~~~Le~qk~~L~~eq~~~e~ 205 (206)
T PF14988_consen 154 LDEFTRSIKRENQQLRKELLQLIQEAQKLEARKSQLEKQKQQLQQEQWYLES 205 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3334456677888888888888888888888777777777777766655553
No 237
>PF13935 Ead_Ea22: Ead/Ea22-like protein
Probab=74.10 E-value=25 Score=30.42 Aligned_cols=15 Identities=7% Similarity=0.240 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHH
Q 021065 295 LKADIETLRAKLYMF 309 (318)
Q Consensus 295 Lrael~~Lr~kl~~~ 309 (318)
....+..++.+|..|
T Consensus 124 ~e~~~~~~~~riaEl 138 (139)
T PF13935_consen 124 YEGEIADYAKRIAEL 138 (139)
T ss_pred HHHHHHHHHHHHHhc
Confidence 344444444444443
No 238
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=73.92 E-value=51 Score=30.36 Aligned_cols=53 Identities=13% Similarity=0.213 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLY 307 (318)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~ 307 (318)
+++..|+.++..++.....|..++..|+.++..+...-..|.++....++...
T Consensus 99 ~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~~~ 151 (219)
T TIGR02977 99 ELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASSRLD 151 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566677777777777777777777777777777776766666665555443
No 239
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=73.91 E-value=27 Score=33.09 Aligned_cols=70 Identities=14% Similarity=0.140 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhhh
Q 021065 245 SARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESA-------VNNRILKADIETLRAKLYMFIEIFL 314 (318)
Q Consensus 245 SArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~-------~EN~~Lrael~~Lr~kl~~~e~~v~ 314 (318)
-|+..=.+.......|+.+...++.+-..|..+...+.+....|. .++..|.+++..+..++..++..+.
T Consensus 23 ~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee~~ 99 (246)
T PF00769_consen 23 RAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIARLEEESE 99 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455556667777777766666666666555555555544 4455555566666666655555443
No 240
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=73.88 E-value=42 Score=38.36 Aligned_cols=83 Identities=18% Similarity=0.165 Sum_probs=61.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021065 233 DKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEI 312 (318)
Q Consensus 233 ~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~ 312 (318)
.+..+-.+.||+--..--.++-..++++-.+.-.|+.++..|..++..|..++..+...+..|+-.--.|......+.+.
T Consensus 372 ~ralkllLEnrrlt~tleelqsss~Ee~~SK~leleke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e 451 (1195)
T KOG4643|consen 372 DRALKLLLENRRLTGTLEELQSSSYEELISKHLELEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEE 451 (1195)
T ss_pred HHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677888998887777777777888888888888888888888888888887777777766665555555555555555
Q ss_pred hhh
Q 021065 313 FLG 315 (318)
Q Consensus 313 v~~ 315 (318)
+..
T Consensus 452 ~~t 454 (1195)
T KOG4643|consen 452 TST 454 (1195)
T ss_pred HHH
Confidence 543
No 241
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=73.87 E-value=48 Score=29.74 Aligned_cols=15 Identities=27% Similarity=0.344 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHH
Q 021065 266 QLRAEHSSLLKGLTD 280 (318)
Q Consensus 266 ~L~~EN~~L~~~l~~ 280 (318)
.++.++..|..++..
T Consensus 86 ~~~~e~k~L~~~v~~ 100 (158)
T PF09744_consen 86 QWRQERKDLQSQVEQ 100 (158)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444444
No 242
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=73.85 E-value=45 Score=30.68 Aligned_cols=31 Identities=32% Similarity=0.431 Sum_probs=19.4
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 021065 245 SARRSRRRKQ-AHLNELETQAGQLRAEHSSLL 275 (318)
Q Consensus 245 SArRSR~RKk-~~l~eLE~qV~~L~~EN~~L~ 275 (318)
|||..+.+.. -.+.+|..++..|..||..|+
T Consensus 8 Sar~~ki~~L~n~l~elq~~l~~l~~ENk~Lk 39 (194)
T PF15619_consen 8 SARLHKIKELQNELAELQRKLQELRKENKTLK 39 (194)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5665555543 456667777777777776665
No 243
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=73.85 E-value=9.9 Score=28.75 Aligned_cols=21 Identities=19% Similarity=0.381 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 021065 257 LNELETQAGQLRAEHSSLLKG 277 (318)
Q Consensus 257 l~eLE~qV~~L~~EN~~L~~~ 277 (318)
+++||.++..+......++++
T Consensus 2 i~elEn~~~~~~~~i~tvk~e 22 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKE 22 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555444433333
No 244
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=73.41 E-value=13 Score=39.95 Aligned_cols=58 Identities=24% Similarity=0.322 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhhhhc
Q 021065 259 ELETQAGQLRAEHSSLLKGL-------TDVNQKYDESAVNNRILKADIE-------TLRAKLYMFIEIFLGE 316 (318)
Q Consensus 259 eLE~qV~~L~~EN~~L~~~l-------~~L~qk~~~l~~EN~~Lrael~-------~Lr~kl~~~e~~v~~~ 316 (318)
.+-.+|..|-.||.+|...- .+|..+..+|..||.+||-+++ .|..|++.+|+.+|++
T Consensus 298 GMGrEVeNLilENsqLLetKNALNiVKNDLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~ 369 (832)
T KOG2077|consen 298 GMGREVENLILENSQLLETKNALNIVKNDLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKA 369 (832)
T ss_pred cchHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555554332 2455566666666666655543 3555666666666553
No 245
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=73.30 E-value=67 Score=29.28 Aligned_cols=17 Identities=18% Similarity=0.223 Sum_probs=10.1
Q ss_pred CCChHHHHHHHHhhhhh
Q 021065 108 PVDSDEYRAYLKTKLDL 124 (318)
Q Consensus 108 ~~Dp~~y~a~Lk~kL~~ 124 (318)
-.|=...+..|..+|..
T Consensus 32 R~dVi~L~e~Ld~~L~~ 48 (189)
T PF10211_consen 32 RQDVIQLQEWLDKMLQQ 48 (189)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34555666666666654
No 246
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=73.27 E-value=16 Score=35.75 Aligned_cols=62 Identities=15% Similarity=0.117 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 021065 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFLGE 316 (318)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~~ 316 (318)
-+|.+|+.++..-+..+.+|+.....|......|..+-......|--|+.+|+.-++.|+|+
T Consensus 236 Gria~Le~eLAmQKs~seElkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~l 297 (330)
T KOG2991|consen 236 GRIAELEIELAMQKSQSEELKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQRL 297 (330)
T ss_pred ccHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHH
Confidence 45778888888888899999999999888888888888888888888888888888777765
No 247
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=73.18 E-value=40 Score=25.87 Aligned_cols=29 Identities=7% Similarity=0.139 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 257 LNELETQAGQLRAEHSSLLKGLTDVNQKY 285 (318)
Q Consensus 257 l~eLE~qV~~L~~EN~~L~~~l~~L~qk~ 285 (318)
...++.++...+..|..|..++..|..+.
T Consensus 27 n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ 55 (61)
T PF08826_consen 27 NLAFESKLQEAEKRNRELEQEIERLKKEM 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666666665544433
No 248
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=73.15 E-value=33 Score=29.85 Aligned_cols=43 Identities=9% Similarity=0.042 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKAD 298 (318)
Q Consensus 256 ~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrae 298 (318)
.+..|+.++...+...+.-...+..|+..+..+..+++.+..+
T Consensus 42 ~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~ 84 (160)
T PF13094_consen 42 QLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKK 84 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445555555555555555555555555555555555444333
No 249
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=73.13 E-value=96 Score=30.71 Aligned_cols=74 Identities=24% Similarity=0.345 Sum_probs=36.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 234 KRARRMLSNRESARRSRRRKQ-AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLY 307 (318)
Q Consensus 234 KR~RR~lsNRESArRSR~RKk-~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~ 307 (318)
+..|.-+.+..++-++.++.+ +.+.+|-.++..|+.+-..+..++..+..+...+-..-..|..++..|+.+..
T Consensus 26 ~ekR~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~e~~~ 100 (294)
T COG1340 26 KEKRDELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKEKRN 100 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333445555555555544432 44555555555555555555555555555544444444444444444444433
No 250
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=72.97 E-value=62 Score=35.47 Aligned_cols=29 Identities=24% Similarity=0.386 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 256 HLNELETQAGQLRAEHSSLLKGLTDVNQK 284 (318)
Q Consensus 256 ~l~eLE~qV~~L~~EN~~L~~~l~~L~qk 284 (318)
.|.+|+.+++.|+..-..|..+++++..+
T Consensus 580 ~L~~l~e~~~~l~~~ae~LaeR~e~a~d~ 608 (717)
T PF10168_consen 580 ELQELQEERKSLRESAEKLAERYEEAKDK 608 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555544433
No 251
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=72.75 E-value=8 Score=33.19 Aligned_cols=27 Identities=15% Similarity=0.271 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 271 HSSLLKGLTDVNQKYDESAVNNRILKA 297 (318)
Q Consensus 271 N~~L~~~l~~L~qk~~~l~~EN~~Lra 297 (318)
...|+.++.+|..+...|+.||..||.
T Consensus 69 Ve~Lk~qI~eL~er~~~Le~EN~lLk~ 95 (123)
T KOG4797|consen 69 VEVLKEQIRELEERNSALERENSLLKT 95 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444455555555556666666653
No 252
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=72.68 E-value=12 Score=27.25 Aligned_cols=29 Identities=21% Similarity=0.306 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 276 KGLTDVNQKYDESAVNNRILKADIETLRA 304 (318)
Q Consensus 276 ~~l~~L~qk~~~l~~EN~~Lrael~~Lr~ 304 (318)
..+..|..++..|..+|..|+.++..|+.
T Consensus 25 ~~~~~le~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 25 QREEELEQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44455666666677777777777777654
No 253
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=72.64 E-value=20 Score=40.73 Aligned_cols=31 Identities=32% Similarity=0.486 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 253 KQAHLNELETQAGQLRAEHSSLLKGLTDVNQ 283 (318)
Q Consensus 253 Kk~~l~eLE~qV~~L~~EN~~L~~~l~~L~q 283 (318)
+..++++|+..+-.|+.||+.|..++..|..
T Consensus 528 ~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~ 558 (1195)
T KOG4643|consen 528 LSNKLEELEELLGNLEEENAHLLKQIQSLKT 558 (1195)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3466888888888999999999998888765
No 254
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=72.47 E-value=30 Score=31.58 Aligned_cols=26 Identities=23% Similarity=0.383 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 262 TQAGQLRAEHSSLLKGLTDVNQKYDE 287 (318)
Q Consensus 262 ~qV~~L~~EN~~L~~~l~~L~qk~~~ 287 (318)
.++++....|..|...+..|...+..
T Consensus 88 eQLEq~~~~N~~L~~dl~klt~~~~~ 113 (182)
T PF15035_consen 88 EQLEQARKANEALQEDLQKLTQDWER 113 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555555555444444
No 255
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=72.38 E-value=55 Score=33.17 Aligned_cols=29 Identities=14% Similarity=-0.002 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 021065 287 ESAVNNRILKADIETLRAKLYMFIEIFLG 315 (318)
Q Consensus 287 ~l~~EN~~Lrael~~Lr~kl~~~e~~v~~ 315 (318)
.+..+-..+++++..+++.+..+++.+.+
T Consensus 288 ~~~~~l~~~~~~l~~~~~~l~~a~~~l~~ 316 (457)
T TIGR01000 288 KVKQEITDLNQKLLELESKIKSLKEDSQK 316 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34444445566666666666666665544
No 256
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=72.36 E-value=62 Score=28.13 Aligned_cols=19 Identities=37% Similarity=0.520 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 021065 257 LNELETQAGQLRAEHSSLL 275 (318)
Q Consensus 257 l~eLE~qV~~L~~EN~~L~ 275 (318)
+..+..++..|+..+..|.
T Consensus 57 ~~~~~~~~~~l~~~~~kl~ 75 (136)
T PF04871_consen 57 LEELASEVKELEAEKEKLK 75 (136)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444443333
No 257
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=72.13 E-value=52 Score=26.86 Aligned_cols=54 Identities=17% Similarity=0.071 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 021065 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFLG 315 (318)
Q Consensus 258 ~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~ 315 (318)
.+|+..++.|...+..|.. ..+++..++.+-..|.+-+..|-...+.+|.-|++
T Consensus 45 ~~l~~~~~~l~~k~~~l~~----~l~~Id~Ie~~V~~LE~~v~~LD~ysk~LE~k~k~ 98 (99)
T PF10046_consen 45 AGLEKNLEDLNQKYEELQP----YLQQIDQIEEQVTELEQTVYELDEYSKELESKFKK 98 (99)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4444444444444333322 23344455556666666677777777777766665
No 258
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=72.06 E-value=55 Score=33.35 Aligned_cols=28 Identities=21% Similarity=0.176 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021065 287 ESAVNNRILKADIETLRAKLYMFIEIFL 314 (318)
Q Consensus 287 ~l~~EN~~Lrael~~Lr~kl~~~e~~v~ 314 (318)
.+..+-+.|+.++..|..++..+++.+.
T Consensus 70 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~ 97 (425)
T PRK05431 70 ALIAEVKELKEEIKALEAELDELEAELE 97 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666666665544
No 259
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=72.05 E-value=17 Score=30.88 Aligned_cols=41 Identities=22% Similarity=0.228 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 263 QAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR 303 (318)
Q Consensus 263 qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr 303 (318)
||-.|+.-..-|..++..++++...|..||.+|-+=|+.|-
T Consensus 64 QVLELQnTLdDLSqRVdsVKEEnLKLrSENQVLGQYIeNLM 104 (120)
T KOG3650|consen 64 QVLELQNTLDDLSQRVDSVKEENLKLRSENQVLGQYIENLM 104 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHH
Confidence 33333333334444444444444555566666666655554
No 260
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=71.62 E-value=21 Score=36.45 Aligned_cols=66 Identities=18% Similarity=0.134 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 244 ESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMF 309 (318)
Q Consensus 244 ESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~ 309 (318)
++|.--|.|-.+.-...|.+++.+..|...|+.+++....+..-+..||..||.-+..|.+-.+++
T Consensus 227 ee~aaERerglqteaqvek~i~EfdiEre~LRAel~ree~r~K~lKeEmeSLkeiVkdlEA~hQh~ 292 (561)
T KOG1103|consen 227 EEAAAERERGLQTEAQVEKLIEEFDIEREFLRAELEREEKRQKMLKEEMESLKEIVKDLEADHQHL 292 (561)
T ss_pred HHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhc
Confidence 455666666666666666777777777777777777777776677777777776666666655554
No 261
>KOG3335 consensus Predicted coiled-coil protein [General function prediction only]
Probab=71.48 E-value=9.6 Score=35.07 Aligned_cols=50 Identities=16% Similarity=0.266 Sum_probs=34.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 232 DDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDE 287 (318)
Q Consensus 232 e~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~ 287 (318)
+-.|.+|..+++ -...++++.+|+.+|..|+.+.+.+.+.+.+|..++..
T Consensus 89 Ey~R~~~~e~~k------ee~~~~e~~elr~~~~~l~~~i~~~~~~~~~L~~~l~~ 138 (181)
T KOG3335|consen 89 EYWRQARKERKK------EEKRKQEIMELRLKVEKLENAIAELTKFFSQLHSKLNK 138 (181)
T ss_pred hhHHhhhcchhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 456777766665 35556788888888888888777777777766544433
No 262
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=71.41 E-value=43 Score=34.72 Aligned_cols=29 Identities=24% Similarity=0.258 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 253 KQAHLNELETQAGQLRAEHSSLLKGLTDV 281 (318)
Q Consensus 253 Kk~~l~eLE~qV~~L~~EN~~L~~~l~~L 281 (318)
=++++.++|..++.|+.||..|..+....
T Consensus 46 i~a~~~~~E~~l~~Lq~e~~~l~e~~v~~ 74 (459)
T KOG0288|consen 46 IKAKLQEKELELNRLQEENTQLNEERVRE 74 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788889999999999999888776553
No 263
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=71.16 E-value=34 Score=33.74 Aligned_cols=61 Identities=20% Similarity=0.163 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 021065 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFLG 315 (318)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~ 315 (318)
..+.+|..|+..++..--+=.+.--+.+--+.++..|-+.||+=|++++..|.....=|++
T Consensus 89 tEI~eLksQL~RMrEDWIEEECHRVEAQLALKEARkEIkQLkQvieTmrssL~ekDkGiQK 149 (305)
T PF15290_consen 89 TEIDELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQVIETMRSSLAEKDKGIQK 149 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHH
Confidence 3455555555544432222112111222224455666777777777777776655544443
No 264
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=71.15 E-value=44 Score=34.25 Aligned_cols=53 Identities=11% Similarity=0.146 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 254 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKL 306 (318)
Q Consensus 254 k~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl 306 (318)
.++..+-..-+..|+.|..+|..+++.-..+....+.+...|..++++-+.+-
T Consensus 131 aqdaaeGDDlt~~LEKEReqL~QQiEFe~~e~kK~E~~k~Kl~~qLeeEk~RH 183 (561)
T KOG1103|consen 131 AQDAAEGDDLTAHLEKEREQLQQQIEFEIEEKKKAEIAKDKLEMQLEEEKKRH 183 (561)
T ss_pred hhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333445688888899999988888888888888888877776655443
No 265
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=70.93 E-value=32 Score=37.25 Aligned_cols=56 Identities=20% Similarity=0.281 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFI 310 (318)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e 310 (318)
..|.+||.+-+.|..|.+++..+++++++.+.....|-..||-.++.-+..++.+.
T Consensus 93 ~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~ 148 (907)
T KOG2264|consen 93 LELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELR 148 (907)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHH
Confidence 57889999999999999999999999999888888888888888887776665543
No 266
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=70.80 E-value=14 Score=29.46 Aligned_cols=38 Identities=24% Similarity=0.357 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 267 LRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (318)
Q Consensus 267 L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~ 304 (318)
...+...+..++..+.++...+..||..|+.++..|..
T Consensus 33 ~~~~~~~~~~~l~~l~~~~~~l~~e~~~L~lE~~~l~~ 70 (97)
T PF04999_consen 33 SRHQSRQLFYELQQLEKEIDQLQEENERLRLEIATLSS 70 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 44456666777777777777888888888888777754
No 267
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=70.75 E-value=61 Score=27.38 Aligned_cols=31 Identities=26% Similarity=0.381 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 277 GLTDVNQKYDESAVNNRILKADIETLRAKLY 307 (318)
Q Consensus 277 ~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~ 307 (318)
.|..+.++...|.-.|..|-.+++.|+..+.
T Consensus 41 ~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~ 71 (102)
T PF10205_consen 41 ALRKLEQENDSLTFRNQQLTKRVEVLQEELE 71 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444443
No 268
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=70.56 E-value=61 Score=33.45 Aligned_cols=48 Identities=10% Similarity=0.057 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 264 AGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIE 311 (318)
Q Consensus 264 V~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~ 311 (318)
+..+..-...+..++..+..+...+..+-+.|+.++..|+.+|..+..
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~ 173 (525)
T TIGR02231 126 LKEWFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELNALLT 173 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 455667777777888888888888888888888888888888877653
No 269
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=70.33 E-value=21 Score=29.67 Aligned_cols=38 Identities=29% Similarity=0.313 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 266 QLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR 303 (318)
Q Consensus 266 ~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr 303 (318)
.+..++..|..+|..++.+...+...|+.|-+++.+|.
T Consensus 7 ~~~~~~~~l~~~L~~v~~~~l~l~~~n~el~~el~~l~ 44 (106)
T PF05837_consen 7 NLQQESRSLQEKLSDVEKKRLRLKRRNQELAQELLELA 44 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444333
No 270
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=70.16 E-value=63 Score=28.57 Aligned_cols=56 Identities=16% Similarity=0.170 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 254 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFI 310 (318)
Q Consensus 254 k~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e 310 (318)
+..+-.|.++-..|+..-=...+++..+.|+ +.|+.+|..|.++++.|+..+..+.
T Consensus 46 reEVvrlKQrRRTLKNRGYA~sCR~KRv~Qk-~eLE~~k~~L~qqv~~L~~e~s~~~ 101 (135)
T KOG4196|consen 46 REEVVRLKQRRRTLKNRGYAQSCRVKRVQQK-HELEKEKAELQQQVEKLKEENSRLR 101 (135)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555566666555666777776655 4678888888888888887776554
No 271
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=70.14 E-value=52 Score=25.96 Aligned_cols=37 Identities=14% Similarity=0.082 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021065 278 LTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFL 314 (318)
Q Consensus 278 l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~ 314 (318)
+..+..+.-.+.+++..|+.++..++..|..++..+.
T Consensus 38 ~~~~~keNieLKve~~~L~~el~~~~~~l~~a~~~~e 74 (75)
T PF07989_consen 38 IEELLKENIELKVEVESLKRELQEKKKLLKEAEKAIE 74 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3355666667888888888888888888888887653
No 272
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=70.11 E-value=32 Score=32.19 Aligned_cols=24 Identities=17% Similarity=0.195 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 021065 291 NNRILKADIETLRAKLYMFIEIFL 314 (318)
Q Consensus 291 EN~~Lrael~~Lr~kl~~~e~~v~ 314 (318)
+=...+.+++.|+.+++.+++.|.
T Consensus 170 ~L~~v~~eIe~~~~~~~~l~~~v~ 193 (262)
T PF14257_consen 170 ELSRVRSEIEQLEGQLKYLDDRVD 193 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 333455555555555555555554
No 273
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=69.92 E-value=66 Score=27.07 Aligned_cols=40 Identities=18% Similarity=0.242 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021065 273 SLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEI 312 (318)
Q Consensus 273 ~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~ 312 (318)
.|..++..+.+++..|..+|..|++++..|+.-..++++.
T Consensus 54 ~l~~qi~~~~~e~~~L~~~~~~l~~ei~~L~dg~~~i~e~ 93 (117)
T COG2919 54 QLQRQIAAQQAELEKLSARNTALEAEIKDLKDGRDYIEER 93 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 3444444555555566666666666666666664444443
No 274
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=69.80 E-value=70 Score=27.31 Aligned_cols=72 Identities=25% Similarity=0.190 Sum_probs=47.4
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 238 RMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIE 311 (318)
Q Consensus 238 R~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~ 311 (318)
-+..|+.-|.+.=. ++.+++++..++..+-.+...|..++..+.+++..+ ..+-....=...|+..+..+|+
T Consensus 39 l~~~n~~lAe~nL~-~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l-~~~~s~~~l~~~L~~~~~e~ee 110 (150)
T PF07200_consen 39 LLAENEELAEQNLS-LEPELEELRSQLQELYEELKELESEYQEKEQQQDEL-SSNYSPDALLARLQAAASEAEE 110 (150)
T ss_dssp HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HccCCHHHHHHHHHHHHHHHHH
Confidence 35567777765533 346777777777777777777888887777777777 5565555566666666666654
No 275
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=69.44 E-value=97 Score=31.06 Aligned_cols=81 Identities=19% Similarity=0.238 Sum_probs=44.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 233 DKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRA------------------EHSSLLKGLTDVNQKYDESAVNNRI 294 (318)
Q Consensus 233 ~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~------------------EN~~L~~~l~~L~qk~~~l~~EN~~ 294 (318)
.++.|+++++|...-..=+||..++.-=+..+.+|+. ..--|..++.+|.+++..++.|=..
T Consensus 121 ~~e~r~~lk~RI~rSEAFKRKllE~kYD~~mL~qLr~g~~~~~~~~~~~~~~~~D~v~LLqkk~~~l~~~l~~~~~eL~~ 200 (323)
T PF08537_consen 121 GREERRLLKDRILRSEAFKRKLLEKKYDKRMLEQLRRGRSKNRHNRPRNPSSNSDRVILLQKKIDELEERLNDLEKELEI 200 (323)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCCCCcccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566788889888777777775544333344444432 1112444445555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 021065 295 LKADIETLRAKLYMFIEIF 313 (318)
Q Consensus 295 Lrael~~Lr~kl~~~e~~v 313 (318)
++..+.--..|...||..+
T Consensus 201 ~~k~L~faqekn~LlqslL 219 (323)
T PF08537_consen 201 TKKDLKFAQEKNALLQSLL 219 (323)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555544
No 276
>PF09727 CortBP2: Cortactin-binding protein-2; InterPro: IPR019131 This entry represents a N-terminal domain found in cortactin-binding protein 2 and in filamin A interacting protein 1 (Filip1). In addition to being a positional candidate for autism, cortactin-binding protein 2 is expressed at highest levels in the brain in humans. Towards the C-terminal end of this protein are a series of proline-rich regions which are likely to be the points of interaction with the SH3 domain of cortactin. The human protein has six associated ankyrin repeat domains (IPR002110 from INTERPRO) towards the C terminus of the protein which act as protein-protein interaction domains []. Filip1 controls the start of neocortical cell migration from the ventricular zone by acting through a filamin-A/F-actin axis. It may be able to induce the degradation of Filamin A [, ].
Probab=69.35 E-value=75 Score=29.60 Aligned_cols=46 Identities=22% Similarity=0.275 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 264 AGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMF 309 (318)
Q Consensus 264 V~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~ 309 (318)
..-|+.|-..|..+++.=+.+...++.|+..+..++.+=+.|.+.+
T Consensus 136 t~lLEkEReRLkq~lE~Ek~~~~~~EkE~~K~~~~l~eE~~k~K~~ 181 (192)
T PF09727_consen 136 TNLLEKERERLKQQLEQEKAQQKKLEKEHKKLVSQLEEERTKLKSF 181 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5578889999999999888899999999999888877777776654
No 277
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=69.28 E-value=8.1 Score=31.65 Aligned_cols=31 Identities=16% Similarity=0.301 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 252 RKQAHLNELETQAGQLRAEHSSLLKGLTDVN 282 (318)
Q Consensus 252 RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~ 282 (318)
.|+.+++.|..+++.++.+|..|..++..++
T Consensus 77 ~~~~~~~~L~~~l~~l~~eN~~L~~~i~~~r 107 (109)
T PF03980_consen 77 YKKKEREQLNARLQELEEENEALAEEIQEQR 107 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3457778888888888888888888877654
No 278
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=69.11 E-value=87 Score=33.82 Aligned_cols=49 Identities=22% Similarity=0.196 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 021065 267 LRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFLG 315 (318)
Q Consensus 267 L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~ 315 (318)
|+.+...|.+++..|..++.....+|..|-.-+.....+|..+|..+.+
T Consensus 85 Lq~E~~~L~kElE~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~ 133 (617)
T PF15070_consen 85 LQAEAEHLRKELESLEEQLQAQVENNEQLSRLNQEQEERLAELEEELER 133 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444456778888888888877777777766556666677776666654
No 279
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=69.04 E-value=8.6 Score=29.47 Aligned_cols=20 Identities=35% Similarity=0.484 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 021065 256 HLNELETQAGQLRAEHSSLL 275 (318)
Q Consensus 256 ~l~eLE~qV~~L~~EN~~L~ 275 (318)
++.+|+.++.+|+.||.-|+
T Consensus 22 ~I~eL~~~n~~Le~EN~~Lk 41 (59)
T PF01166_consen 22 QIAELEERNSQLEEENNLLK 41 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555544
No 280
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=68.82 E-value=38 Score=31.16 Aligned_cols=40 Identities=23% Similarity=0.238 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 272 SSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIE 311 (318)
Q Consensus 272 ~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~ 311 (318)
.....++..-..+...+..++..|..++..|+.+|+.-|.
T Consensus 153 k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~klkEKer 192 (194)
T PF15619_consen 153 KSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKLKEKER 192 (194)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344444445556667777888888888888888877664
No 281
>PRK10698 phage shock protein PspA; Provisional
Probab=68.72 E-value=76 Score=29.59 Aligned_cols=53 Identities=11% Similarity=0.164 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYM 308 (318)
Q Consensus 256 ~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~ 308 (318)
.+..|+.++...+.....|...+..|..++..+...-..|.++...-+++.++
T Consensus 100 ~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~ 152 (222)
T PRK10698 100 LIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSRDV 152 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666666666677777777777777777777777776666555555443
No 282
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=68.70 E-value=34 Score=33.70 Aligned_cols=53 Identities=21% Similarity=0.221 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021065 262 TQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFL 314 (318)
Q Consensus 262 ~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~ 314 (318)
-+|..|+.....|...+..++++|.....+-..+|..+..|+..+..+.+.|+
T Consensus 112 yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~ 164 (302)
T PF09738_consen 112 YQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLK 164 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444445555555555555555555667777777777777776665
No 283
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=68.50 E-value=67 Score=39.11 Aligned_cols=53 Identities=28% Similarity=0.352 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 259 ELETQAGQLRAEHSSLLKGLTDV-------NQKYDESAVNNRILKADIETLRAKLYMFIE 311 (318)
Q Consensus 259 eLE~qV~~L~~EN~~L~~~l~~L-------~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~ 311 (318)
++-.+++.|+.+|..|..++.+| ...++.++..++.|-.++.+|+.+|..+|+
T Consensus 1481 e~~e~~e~l~renk~l~~ei~dl~~~~~e~~k~v~elek~~r~le~e~~elQ~aLeElE~ 1540 (1930)
T KOG0161|consen 1481 ELLEQLEELRRENKNLSQEIEDLEEQKDEGGKRVHELEKEKRRLEQEKEELQAALEELEA 1540 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444433 334555556666666666666666666655
No 284
>PF03233 Cauli_AT: Aphid transmission protein; InterPro: IPR004917 This protein is found in various caulimoviruses. It codes for an 18 kDa protein (PII), which is dispensable for infection but which is required for aphid transmission of the virus []. This protein interacts with the PIII protein []. ; GO: 0019089 transmission of virus
Probab=68.48 E-value=14 Score=33.53 Aligned_cols=50 Identities=16% Similarity=0.265 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC
Q 021065 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFLGENG 318 (318)
Q Consensus 258 ~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~~~~ 318 (318)
.++..++..|+.++..|...+ .-|..|+..+-.+..+|+..++.|+++.|
T Consensus 114 ~e~snki~kLe~~~k~L~d~I-----------v~~~~i~e~IKd~de~L~~I~d~iK~Iig 163 (163)
T PF03233_consen 114 EEISNKIRKLETEVKKLKDNI-----------VTEKLIEELIKDFDERLKEIRDKIKKIIG 163 (163)
T ss_pred HHHHHHHHHHHHHHHhHhhhc-----------cccHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 333345555555555554443 33777888999999999999999999877
No 285
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=68.37 E-value=44 Score=38.18 Aligned_cols=39 Identities=28% Similarity=0.357 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 259 ELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKA 297 (318)
Q Consensus 259 eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lra 297 (318)
....++++|+.+.+.+..++..+...|......|+.|+.
T Consensus 445 ~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~ 483 (1041)
T KOG0243|consen 445 EMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKE 483 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 333444444444445555555554444433333333333
No 286
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=68.15 E-value=21 Score=28.71 Aligned_cols=49 Identities=16% Similarity=0.115 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (318)
Q Consensus 257 l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~k 305 (318)
-.+|..++..-+.|...|..-++.|+.++.....-|..|..+...++..
T Consensus 7 Nk~L~~kL~~K~eEI~rLn~lv~sLR~KLiKYt~LnkkLq~~~~~~~~~ 55 (76)
T PF11544_consen 7 NKELKKKLNDKQEEIDRLNILVGSLRGKLIKYTELNKKLQDQLLNLQRS 55 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3566666777777777777777777777777777777787777777765
No 287
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=68.14 E-value=29 Score=29.61 Aligned_cols=42 Identities=5% Similarity=0.105 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 021065 274 LLKGLTDVNQKYD-ESAVNNRILKADIETLRAKLYMFIEIFLG 315 (318)
Q Consensus 274 L~~~l~~L~qk~~-~l~~EN~~Lrael~~Lr~kl~~~e~~v~~ 315 (318)
+..++..+.+.+. .-..+-..|+.++..|+.+|..+|+-++|
T Consensus 66 ~~r~i~~ml~~~~~~r~~~~~~l~~rvd~Lerqv~~Lenk~kr 108 (108)
T COG3937 66 IPRKIEEMLSDLEVARQSEMDELTERVDALERQVADLENKLKR 108 (108)
T ss_pred hhHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3344444433333 11244577888899999999988887764
No 288
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=68.11 E-value=59 Score=29.98 Aligned_cols=64 Identities=17% Similarity=0.138 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021065 251 RRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFL 314 (318)
Q Consensus 251 ~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~ 314 (318)
.-|++-++.||.+|...+.-.......|.....-......-....+.++..|+..|+.+...+.
T Consensus 63 ~GKq~iveqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~~nl~ 126 (188)
T PF05335_consen 63 AGKQQIVEQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKAAQANLA 126 (188)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3788999999999998888888877777777666666666666666666666666666555443
No 289
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=67.76 E-value=29 Score=35.23 Aligned_cols=55 Identities=20% Similarity=0.239 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021065 260 LETQAGQLRAEHSSLLKGLTDVNQK----YDESAVNNRILKADIETLRAKLYMFIEIFL 314 (318)
Q Consensus 260 LE~qV~~L~~EN~~L~~~l~~L~qk----~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~ 314 (318)
|..+++.|+.+-..+.+++..+... ...+..+-+.|+.++..|.++++.+++.+.
T Consensus 42 ~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~ 100 (418)
T TIGR00414 42 LLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALEAELQ 100 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555443211 334444556666666666666666665443
No 290
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=67.74 E-value=30 Score=32.05 Aligned_cols=40 Identities=25% Similarity=0.170 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021065 273 SLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEI 312 (318)
Q Consensus 273 ~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~ 312 (318)
.|..+-..+..+...+...+..|+++|..|+++...+++-
T Consensus 179 ~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~~~~~~ 218 (221)
T PF05700_consen 179 YLEQRWKELVSKNLEIEVACEELEQEIEQLKRKAAELKEN 218 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4445555555555667777777777777777777666543
No 291
>PRK12705 hypothetical protein; Provisional
Probab=67.60 E-value=1.2e+02 Score=32.09 Aligned_cols=15 Identities=27% Similarity=0.426 Sum_probs=6.0
Q ss_pred HHhHHHHHHHHHHHH
Q 021065 240 LSNRESARRSRRRKQ 254 (318)
Q Consensus 240 lsNRESArRSR~RKk 254 (318)
+..++-+.+.|....
T Consensus 55 ~~~~~~~~~~~~~~e 69 (508)
T PRK12705 55 LEAKELLLRERNQQR 69 (508)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444333
No 292
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=67.59 E-value=55 Score=29.47 Aligned_cols=56 Identities=16% Similarity=0.127 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFI 310 (318)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e 310 (318)
.|...|+.++..++.++..|...+.....++......-..+..++...+.++..+.
T Consensus 79 ~~r~~l~~~~~~~e~~~a~l~~~l~~~~~~ia~~~raIarn~a~id~~~er~~~l~ 134 (158)
T PF09486_consen 79 RYRDVLEERVRAAEAELAALRQALRAAEDEIAATRRAIARNDARIDVCRERIDRLR 134 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 45566666666666666666666665555555555555555555555555554443
No 293
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=67.48 E-value=20 Score=28.92 Aligned_cols=31 Identities=23% Similarity=0.364 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 270 EHSSLLKGLTDVNQKYDESAVNNRILKADIE 300 (318)
Q Consensus 270 EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~ 300 (318)
.+..|..++..|+.+...+..+|..|+.++.
T Consensus 69 K~~~l~~~i~~l~~ke~~l~~en~~L~~~~~ 99 (100)
T PF01486_consen 69 KDQLLMEQIEELKKKERELEEENNQLRQKIE 99 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444566666666666666666666666553
No 294
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=67.29 E-value=51 Score=32.87 Aligned_cols=31 Identities=35% Similarity=0.316 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021065 282 NQKYDESAVNNRILKADIETLRAKLYMFIEI 312 (318)
Q Consensus 282 ~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~ 312 (318)
.+-+.....+|..|+.++..|+++|..+..-
T Consensus 71 a~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD 101 (319)
T PF09789_consen 71 AQLLSESREQNKKLKEEVEELRQKLNEAQGD 101 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Confidence 3444555566666666666666666555443
No 295
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=67.17 E-value=37 Score=32.14 Aligned_cols=52 Identities=21% Similarity=0.221 Sum_probs=33.9
Q ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 254 QAHLNEL---ETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (318)
Q Consensus 254 k~~l~eL---E~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~k 305 (318)
..|+++| ...++.|+....++..+.......+..+..|=..|+.++..+|..
T Consensus 49 ~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 49 MAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555 456666666666666666666666666666666777777777665
No 296
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=67.13 E-value=68 Score=34.05 Aligned_cols=53 Identities=8% Similarity=0.198 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 259 ELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIE 311 (318)
Q Consensus 259 eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~ 311 (318)
+|-.++......+..+..+...|..++...+.+...|..++..+..++.+++|
T Consensus 424 eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqD 476 (518)
T PF10212_consen 424 ELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQD 476 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333334444444444433
No 297
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=67.11 E-value=26 Score=29.18 Aligned_cols=26 Identities=27% Similarity=0.447 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 260 LETQAGQLRAEHSSLLKGLTDVNQKY 285 (318)
Q Consensus 260 LE~qV~~L~~EN~~L~~~l~~L~qk~ 285 (318)
|..++..|+.+|..|..+|..++.++
T Consensus 20 lRRkl~ele~eN~~l~~EL~kyk~~~ 45 (96)
T PF11365_consen 20 LRRKLSELEDENKQLTEELNKYKSKY 45 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33445555566666666665555444
No 298
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=66.95 E-value=60 Score=34.53 Aligned_cols=42 Identities=19% Similarity=0.248 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021065 272 SSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIF 313 (318)
Q Consensus 272 ~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v 313 (318)
+.|..++..+..++..+..+-..++.++..|..++..++..+
T Consensus 424 ~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 465 (650)
T TIGR03185 424 AQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTL 465 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555555555444443
No 299
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=66.89 E-value=39 Score=25.94 Aligned_cols=38 Identities=16% Similarity=0.146 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021065 277 GLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFL 314 (318)
Q Consensus 277 ~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~ 314 (318)
++..+......++..+..+..++..+..+|..+++..+
T Consensus 14 ~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~k 51 (71)
T PF10779_consen 14 KLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSNTK 51 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444455556666666667777777776666543
No 300
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=66.83 E-value=54 Score=24.90 Aligned_cols=35 Identities=9% Similarity=0.225 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAV 290 (318)
Q Consensus 256 ~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~ 290 (318)
.++.|..+|..|.....+|...+..++.....+..
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~ 38 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKE 38 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666666555555444333
No 301
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=66.80 E-value=98 Score=27.85 Aligned_cols=47 Identities=19% Similarity=0.376 Sum_probs=29.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Q 021065 239 MLSNRESARRSRRRKQAHLNELETQAGQ-------LRAEHSSLLKGLTDVNQKY 285 (318)
Q Consensus 239 ~lsNRESArRSR~RKk~~l~eLE~qV~~-------L~~EN~~L~~~l~~L~qk~ 285 (318)
+..=.+.+|.-..+-+..|.++..+|.. |+......+.+|..+...|
T Consensus 18 If~I~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f 71 (159)
T PF05384_consen 18 IFEIAEQARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNF 71 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3344678888888888888888776554 4444444455555444443
No 302
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.74 E-value=35 Score=38.10 Aligned_cols=63 Identities=13% Similarity=0.159 Sum_probs=40.1
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 238 RMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIE 300 (318)
Q Consensus 238 R~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~ 300 (318)
....+-..=+--+++-...++.|.+++..|+.||.+|..+++.....+..+.-++..||.++.
T Consensus 654 ~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg 716 (970)
T KOG0946|consen 654 ELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLG 716 (970)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333444444444555555666666677777777777777777776666677777777776666
No 303
>PRK02224 chromosome segregation protein; Provisional
Probab=66.65 E-value=51 Score=35.83 Aligned_cols=14 Identities=14% Similarity=0.221 Sum_probs=8.3
Q ss_pred HHHHHHHHhhhhhh
Q 021065 112 DEYRAYLKTKLDLA 125 (318)
Q Consensus 112 ~~y~a~Lk~kL~~~ 125 (318)
.+.++++..=|.++
T Consensus 112 ~~~~~~i~~llg~~ 125 (880)
T PRK02224 112 RDVREEVTELLRMD 125 (880)
T ss_pred HHHHHHHHHHHCCC
Confidence 35566666666555
No 304
>KOG0483 consensus Transcription factor HEX, contains HOX and HALZ domains [Transcription]
Probab=66.58 E-value=7.9 Score=35.96 Aligned_cols=39 Identities=18% Similarity=0.255 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021065 274 LLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEI 312 (318)
Q Consensus 274 L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~ 312 (318)
|......|+.+|..|..+|..|..++..|++.+..+...
T Consensus 110 lE~d~~~Lk~~~~~l~~~~~~Lq~e~~eL~~~~~~~~~~ 148 (198)
T KOG0483|consen 110 LEKDYESLKRQLESLRSENDRLQSEVQELVAELSSLKRE 148 (198)
T ss_pred hhhhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhh
Confidence 334444444444455555555555555555555444433
No 305
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=66.42 E-value=20 Score=32.85 Aligned_cols=50 Identities=22% Similarity=0.234 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFI 310 (318)
Q Consensus 257 l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e 310 (318)
+.=.|.|+..|+.+|..|..+++.|. ....+|..+-..+..|.-+|-.++
T Consensus 42 vSL~erQ~~~LR~~~~~L~~~l~~Li----~~Ar~Ne~~~~~~~~l~l~LL~a~ 91 (225)
T PF04340_consen 42 VSLVERQLERLRERNRQLEEQLEELI----ENARENEAIFQRLHRLVLALLAAR 91 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHC--
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhcCC
Confidence 44556788888888888888887654 456678888888877777765544
No 306
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=65.91 E-value=46 Score=36.00 Aligned_cols=61 Identities=15% Similarity=0.223 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHh
Q 021065 252 RKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNR-------ILKADIETLRAKLYMFIEI 312 (318)
Q Consensus 252 RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~-------~Lrael~~Lr~kl~~~e~~ 312 (318)
+.+..|+.++.++..-+.+......++.+++.+-.-|.+-+. .|+.....|..+|..++++
T Consensus 97 ~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~k~~LL~Ay~q~c~~~~~~l~e~~~rl~~~~~~~q~~ 164 (632)
T PF14817_consen 97 ELDKEIESREREVSRQEASREQMLDKISDSRHKQLLLEAYSQQCEEQRRILREYTKRLQGQVEQLQDI 164 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456666666666666666666666666655444444333 3444444444445454444
No 307
>PF14282 FlxA: FlxA-like protein
Probab=65.87 E-value=52 Score=27.27 Aligned_cols=20 Identities=30% Similarity=0.406 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 021065 255 AHLNELETQAGQLRAEHSSL 274 (318)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L 274 (318)
..+..|..++..|+.+...|
T Consensus 51 ~q~q~Lq~QI~~LqaQI~ql 70 (106)
T PF14282_consen 51 QQIQLLQAQIQQLQAQIAQL 70 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333444444443333333
No 308
>PF10241 KxDL: Uncharacterized conserved protein; InterPro: IPR019371 This entry represents a conserved region of 80 residues which defines a family of short proteins. There is a characteristic KxDL motif towards the C terminus. The function is unknown.
Probab=65.40 E-value=70 Score=25.67 Aligned_cols=61 Identities=10% Similarity=0.154 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 021065 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFLG 315 (318)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~ 315 (318)
+-+..|+..-..|..-|.....++..+..+|..=..-=..+|.+++....||..+...+..
T Consensus 22 ~~l~~ln~tn~~L~~~n~~s~~rl~~~~~~f~~~~~~l~~mK~DLd~i~krir~lk~kl~~ 82 (88)
T PF10241_consen 22 QTLGRLNKTNEELLNLNDLSQQRLAEARERFARHTKLLKEMKKDLDYIFKRIRSLKAKLAK 82 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467788888888888888888888888888777777777899999999999998877653
No 309
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=65.30 E-value=77 Score=26.08 Aligned_cols=30 Identities=23% Similarity=0.337 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021065 285 YDESAVNNRILKADIETLRAKLYMFIEIFL 314 (318)
Q Consensus 285 ~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~ 314 (318)
......+=..|+.++..|+..+..+++.|.
T Consensus 76 ~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~ 105 (126)
T PF13863_consen 76 KEEKEAEIKKLKAELEELKSEISKLEEKLE 105 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555555555555555544
No 310
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=65.15 E-value=32 Score=30.58 Aligned_cols=55 Identities=24% Similarity=0.195 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQ--------KYDESAVNNRILKADIETLRAKLYMF 309 (318)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~q--------k~~~l~~EN~~Lrael~~Lr~kl~~~ 309 (318)
+-+..|+.+++.|+.+...+..++...+. .|+....+-..|..++..|..+|..+
T Consensus 11 eg~~~L~~EL~~L~~~r~~i~~~i~~Ar~~GDlsENaey~aak~~q~~~e~RI~~L~~~L~~A 73 (158)
T PRK05892 11 AARDHLEAELARLRARRDRLAVEVNDRGMIGDHGDQAEAIQRADELARLDDRINELDRRLRTG 73 (158)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34566777777777666666666644332 25555555555666666666666544
No 311
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=64.91 E-value=63 Score=30.38 Aligned_cols=19 Identities=11% Similarity=0.080 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 021065 273 SLLKGLTDVNQKYDESAVN 291 (318)
Q Consensus 273 ~L~~~l~~L~qk~~~l~~E 291 (318)
.|.+++..|+++...+..+
T Consensus 73 ~l~~en~~L~~e~~~l~~~ 91 (276)
T PRK13922 73 DLREENEELKKELLELESR 91 (276)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444433333333
No 312
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=64.68 E-value=41 Score=35.78 Aligned_cols=42 Identities=21% Similarity=0.255 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKAD 298 (318)
Q Consensus 257 l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrae 298 (318)
|..+..++..+..||.+|..+|.++.++...+..||..|.+-
T Consensus 221 l~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~ 262 (596)
T KOG4360|consen 221 LQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEH 262 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 344445555666667777777777777766666666665433
No 313
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=64.67 E-value=24 Score=34.65 Aligned_cols=24 Identities=38% Similarity=0.398 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 252 RKQAHLNELETQAGQLRAEHSSLL 275 (318)
Q Consensus 252 RKk~~l~eLE~qV~~L~~EN~~L~ 275 (318)
.++..|.+|+.++..|+.+.....
T Consensus 239 ~~~~~l~~l~~~l~~l~~~~~~~~ 262 (344)
T PF12777_consen 239 EKQAELAELEEKLAALQKEYEEAQ 262 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443333
No 314
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.02 E-value=62 Score=34.98 Aligned_cols=71 Identities=20% Similarity=0.230 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 231 VDDKRARRMLSNRESARRSRRRKQAHLN----ELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIET 301 (318)
Q Consensus 231 ~e~KR~RR~lsNRESArRSR~RKk~~l~----eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~ 301 (318)
.|.|+.|--+-|-..-..+=.++...+. .+|.+--.|+.|...++-+-..|-+.|..|+.||-.|..++..
T Consensus 114 neLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEENIsLQKqVs~ 188 (772)
T KOG0999|consen 114 NELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEEENISLQKQVSN 188 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 4566666555554443333222222221 1222333344444444444444444444444444444444333
No 315
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=63.91 E-value=44 Score=35.58 Aligned_cols=59 Identities=12% Similarity=0.143 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 251 RRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMF 309 (318)
Q Consensus 251 ~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~ 309 (318)
.++++-+..+..++..+......+.++|+....++.....||..|-.++..|..|++++
T Consensus 194 ~keq~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~ 252 (596)
T KOG4360|consen 194 EKEQQLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYL 252 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 35555566666666666666677777777777777778888888888888888888875
No 316
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=63.74 E-value=27 Score=26.93 Aligned_cols=31 Identities=16% Similarity=0.308 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 252 RKQAHLNELETQAGQLRAEHSSLLKGLTDVN 282 (318)
Q Consensus 252 RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~ 282 (318)
.....+..++.++..++.+|..|..++..|.
T Consensus 28 ~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~ 58 (85)
T TIGR02209 28 QLNNELQKLQLEIDKLQKEWRDLQLEVAELS 58 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4556677888888888888888887777654
No 317
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=63.70 E-value=39 Score=25.56 Aligned_cols=23 Identities=9% Similarity=0.364 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 021065 259 ELETQAGQLRAEHSSLLKGLTDV 281 (318)
Q Consensus 259 eLE~qV~~L~~EN~~L~~~l~~L 281 (318)
.++..+..++.||+.|+..++.+
T Consensus 11 ~~~~~i~tvk~en~~i~~~ve~i 33 (55)
T PF05377_consen 11 RIESSINTVKKENEEISESVEKI 33 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444433
No 318
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=63.56 E-value=26 Score=35.39 Aligned_cols=14 Identities=7% Similarity=0.031 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHHH
Q 021065 262 TQAGQLRAEHSSLL 275 (318)
Q Consensus 262 ~qV~~L~~EN~~L~ 275 (318)
.++..|+.++..|.
T Consensus 29 ~~~~~~~~~~~~~~ 42 (398)
T PTZ00454 29 KELEFLDIQEEYIK 42 (398)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 319
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=63.40 E-value=94 Score=37.95 Aligned_cols=30 Identities=17% Similarity=0.345 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKY 285 (318)
Q Consensus 256 ~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~ 285 (318)
.+.+.+.+...|+.+...+..++..+..++
T Consensus 916 ~~e~~ee~~~~le~~~~~~~~e~~~l~~~~ 945 (1930)
T KOG0161|consen 916 RLEEEEEKNAELERKKRKLEQEVQELKEQL 945 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333
No 320
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=63.18 E-value=1.5e+02 Score=28.69 Aligned_cols=13 Identities=23% Similarity=0.284 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHH
Q 021065 299 IETLRAKLYMFIE 311 (318)
Q Consensus 299 l~~Lr~kl~~~e~ 311 (318)
+..++.++..++.
T Consensus 248 l~~~~~~l~~~~~ 260 (423)
T TIGR01843 248 LTEAQARLAELRE 260 (423)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 321
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=63.13 E-value=35 Score=36.55 Aligned_cols=9 Identities=33% Similarity=0.287 Sum_probs=4.8
Q ss_pred chHHHHHHH
Q 021065 230 SVDDKRARR 238 (318)
Q Consensus 230 ~~e~KR~RR 238 (318)
..|.|-.||
T Consensus 274 ~~d~kv~kr 282 (655)
T KOG4343|consen 274 GSDIKVLKR 282 (655)
T ss_pred ccCHHHHHH
Confidence 355555554
No 322
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=63.12 E-value=1.1e+02 Score=33.82 Aligned_cols=47 Identities=23% Similarity=0.270 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR 303 (318)
Q Consensus 257 l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr 303 (318)
.+.||.+...|+.|...++.+-..|-+.|..|+.||-.|..+|..|+
T Consensus 71 ~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqvs~Lk 117 (717)
T PF09730_consen 71 CEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQVSVLK 117 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 35555555555555555555555556666666666666666555554
No 323
>PF09602 PhaP_Bmeg: Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg); InterPro: IPR011728 This entry describes a protein found in polyhydroxyalkanoic acid (PHA) gene regions and incorporated into PHA inclusions in Bacillus cereus and Bacillus megaterium. The role of the protein may include amino acid storage [].
Probab=63.09 E-value=1.2e+02 Score=27.66 Aligned_cols=70 Identities=19% Similarity=0.236 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhh
Q 021065 245 SARRSRRRKQAHLNELET-------QAGQLRAEHSSLLKGLTDVNQKYDESA--VNNRILKADIETLRAKLYMFIEIFL 314 (318)
Q Consensus 245 SArRSR~RKk~~l~eLE~-------qV~~L~~EN~~L~~~l~~L~qk~~~l~--~EN~~Lrael~~Lr~kl~~~e~~v~ 314 (318)
.+.+...+-++++.-|+. .++.|+.++..+.+++.++.+.+..-. +.-..|...+.++..+++.+.-.+.
T Consensus 24 ~~~~~kqve~~~l~~lkqqqd~itk~veeLe~~~~q~~~~~s~~~~~~vk~L~k~~~~~l~d~inE~t~k~~El~~~i~ 102 (165)
T PF09602_consen 24 FASFMKQVEQQTLKKLKQQQDWITKQVEELEKELKQFKREFSDLYEEYVKQLRKATGNSLNDSINEWTDKLNELSAKIQ 102 (165)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555554 566666666666666666655533222 3334455666666666666655543
No 324
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=63.02 E-value=1.1e+02 Score=27.75 Aligned_cols=43 Identities=28% Similarity=0.299 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIE 300 (318)
Q Consensus 258 ~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~ 300 (318)
..|+.++..+...-..|...+..+..++..+..+-..|+++..
T Consensus 101 ~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~ 143 (221)
T PF04012_consen 101 ERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKAREN 143 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444444443333
No 325
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=63.01 E-value=26 Score=37.50 Aligned_cols=15 Identities=20% Similarity=0.038 Sum_probs=8.0
Q ss_pred HHHHHHhhhhhhHHH
Q 021065 114 YRAYLKTKLDLACAA 128 (318)
Q Consensus 114 y~a~Lk~kL~~~~AA 128 (318)
.=-||=.+||-.|--
T Consensus 108 iFkfLY~~Ldp~y~f 122 (581)
T KOG0995|consen 108 IFKFLYGFLDPDYEF 122 (581)
T ss_pred HHHHHHhccCCCccc
Confidence 334555666665544
No 326
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=62.96 E-value=80 Score=27.88 Aligned_cols=32 Identities=16% Similarity=0.110 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021065 283 QKYDESAVNNRILKADIETLRAKLYMFIEIFL 314 (318)
Q Consensus 283 qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~ 314 (318)
++.+.+..++..|+.++......+..+++.+.
T Consensus 84 eKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~ 115 (177)
T PF13870_consen 84 EKLHFLSEELERLKQELKDREEELAKLREELY 115 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555554443
No 327
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=62.66 E-value=37 Score=28.86 Aligned_cols=40 Identities=15% Similarity=0.184 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 254 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNR 293 (318)
Q Consensus 254 k~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~ 293 (318)
|.-|++|-.+|...+.||=+|+.+++-|-|-+..|..--.
T Consensus 69 QnTLdDLSqRVdsVKEEnLKLrSENQVLGQYIeNLMSaSS 108 (120)
T KOG3650|consen 69 QNTLDDLSQRVDSVKEENLKLRSENQVLGQYIENLMSASS 108 (120)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhh
Confidence 4557777777777777777777777776666665554333
No 328
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=62.62 E-value=76 Score=25.72 Aligned_cols=52 Identities=17% Similarity=0.144 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 021065 266 QLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFLGEN 317 (318)
Q Consensus 266 ~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~~~ 317 (318)
.++.+.+.|...-..|.+++......-..|+.-..++-.+|..+-+.|+.|+
T Consensus 36 ~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~e~Ir~vL 87 (89)
T PF13747_consen 36 ELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSAIETIRAVL 87 (89)
T ss_pred hHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555555555555566666666666666666666666666666666666554
No 329
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=62.46 E-value=60 Score=35.55 Aligned_cols=57 Identities=14% Similarity=0.184 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021065 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFL 314 (318)
Q Consensus 258 ~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~ 314 (318)
.+++.++..|+.+-+....++..++++...+...-..|..+++....+-..+...++
T Consensus 561 ~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~ 617 (717)
T PF10168_consen 561 EEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVD 617 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555544444444444444444444444333
No 330
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=62.30 E-value=67 Score=29.11 Aligned_cols=37 Identities=16% Similarity=0.205 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 266 QLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETL 302 (318)
Q Consensus 266 ~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~L 302 (318)
.|+.....+..++..|...+..+...=..|+.+...|
T Consensus 102 ~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l 138 (221)
T PF04012_consen 102 RLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREEL 138 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333
No 331
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=62.08 E-value=86 Score=34.20 Aligned_cols=51 Identities=22% Similarity=0.373 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLY 307 (318)
Q Consensus 257 l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~ 307 (318)
+..|..++..|+.+...|..++..+.+.+.....++..+..++..+...+.
T Consensus 243 i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~ 293 (670)
T KOG0239|consen 243 IQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLV 293 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555555555555545444444444444333
No 332
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=62.02 E-value=39 Score=36.19 Aligned_cols=50 Identities=26% Similarity=0.418 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (318)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~ 304 (318)
..|++|..++..++.+...|..++..+..+......++..|.+++.-...
T Consensus 335 ~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k 384 (594)
T PF05667_consen 335 EQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKK 384 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44666777777777777777777777766666666666666666654433
No 333
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=61.86 E-value=66 Score=29.11 Aligned_cols=60 Identities=17% Similarity=0.132 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021065 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDE-SAVNNRILKADIETLRAKLYMFIEIFL 314 (318)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~-l~~EN~~Lrael~~Lr~kl~~~e~~v~ 314 (318)
..++.|+..++.|......+...+..+..++.. ...+-..|+.++..|..-+.|.-+-|+
T Consensus 79 eelerLe~~iKdl~~lye~Vs~d~Npf~s~~~qes~~~veel~eqV~el~~i~emv~~d~~ 139 (157)
T COG3352 79 EELERLEENIKDLVSLYELVSRDFNPFMSKTPQESRGIVEELEEQVNELKMIVEMVIKDLR 139 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 457777777777777777777777766655433 223455566666666665555544443
No 334
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=61.85 E-value=1.4e+02 Score=27.83 Aligned_cols=56 Identities=13% Similarity=0.070 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021065 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEI 312 (318)
Q Consensus 257 l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~ 312 (318)
...++.++..|+......-.+...+...+..|..++..|..++...+.+...+.+.
T Consensus 171 e~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~e 226 (237)
T PF00261_consen 171 EDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEE 226 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555555555555555555555555554444433
No 335
>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2.1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].
Probab=61.83 E-value=66 Score=32.13 Aligned_cols=13 Identities=23% Similarity=0.457 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q 021065 294 ILKADIETLRAKL 306 (318)
Q Consensus 294 ~Lrael~~Lr~kl 306 (318)
.|..++..|+.++
T Consensus 104 ~~~~~l~~l~~~~ 116 (372)
T PF04375_consen 104 QLQQQLAELQQQL 116 (372)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 336
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=61.66 E-value=80 Score=27.92 Aligned_cols=57 Identities=18% Similarity=0.224 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIE 311 (318)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~ 311 (318)
..+++....++.|...-.....+-..+...+..|..|...|..-.+.+..+|...+.
T Consensus 21 ~~~~~~~~~l~~l~~~~~~Vs~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~yF~~ 77 (157)
T PF04136_consen 21 DQTDEILDQLDELQEQYNSVSEKTNSLHEACEQLLEEQTRLEELAEEISEKLQYFEE 77 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhh
Confidence 334555555666666666666666677777778888888888888888888877654
No 337
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=61.63 E-value=72 Score=26.70 Aligned_cols=23 Identities=13% Similarity=0.167 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 021065 287 ESAVNNRILKADIETLRAKLYMF 309 (318)
Q Consensus 287 ~l~~EN~~Lrael~~Lr~kl~~~ 309 (318)
.+..++..|+..+..+..+++.+
T Consensus 91 ~~~~~~~~l~~~~~~~~~~~k~l 113 (118)
T PF13815_consen 91 ELQQEIEKLKQKLKKQKEEIKKL 113 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444443333
No 338
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=61.35 E-value=94 Score=25.78 Aligned_cols=53 Identities=15% Similarity=0.108 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMF 309 (318)
Q Consensus 257 l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~ 309 (318)
.+.+...+.+.+..|..|...+..-++-.......+..++.+.+..+.+++.+
T Consensus 34 n~~q~~tI~qq~~~~~~L~~~~~~~r~~~~~~~~~~qq~r~~~e~~~e~ik~~ 86 (110)
T PF10828_consen 34 NKAQAQTIQQQEDANQELKAQLQQNRQAVEEQQKREQQLRQQSEERRESIKTA 86 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677777788888888888877777788888888898888888877754
No 339
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=60.93 E-value=9.9 Score=27.35 Aligned_cols=23 Identities=13% Similarity=0.154 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 021065 274 LLKGLTDVNQKYDESAVNNRILK 296 (318)
Q Consensus 274 L~~~l~~L~qk~~~l~~EN~~Lr 296 (318)
|..++.++..+...|..||..||
T Consensus 19 l~~ki~~le~~~s~L~~en~~lR 41 (46)
T PF07558_consen 19 LSIKIQELENEVSKLLNENVNLR 41 (46)
T ss_dssp -----------HHHHHHHHHHHH
T ss_pred HHhHHHHHHhHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 340
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=60.87 E-value=1.2e+02 Score=35.21 Aligned_cols=32 Identities=19% Similarity=0.356 Sum_probs=15.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 242 NRESARRSRRRKQAHLNELETQAGQLRAEHSS 273 (318)
Q Consensus 242 NRESArRSR~RKk~~l~eLE~qV~~L~~EN~~ 273 (318)
..+..+.-+.+++..+..|+.++..++.+...
T Consensus 844 ~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klk 875 (1311)
T TIGR00606 844 KIELNRKLIQDQQEQIQHLKSKTNELKSEKLQ 875 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555554444444443333
No 341
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=60.82 E-value=50 Score=32.60 Aligned_cols=61 Identities=21% Similarity=0.196 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021065 253 KQAHLNELETQAGQLRAEHSSLLKGLTDV-------NQKYDESAVNNRILKADIETLRAKLYMFIEIF 313 (318)
Q Consensus 253 Kk~~l~eLE~qV~~L~~EN~~L~~~l~~L-------~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v 313 (318)
-.+.|.+||.+++.|..|+++=.-+|..| +++.....++-..|+.+...|..-+..+|..-
T Consensus 16 aLqKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~r 83 (307)
T PF10481_consen 16 ALQKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTR 83 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHH
Confidence 34678899999999999887744444433 33333333334444444444444444444433
No 342
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=60.76 E-value=58 Score=37.07 Aligned_cols=64 Identities=20% Similarity=0.219 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhh
Q 021065 251 RRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESA---VNNRILKADIETLRAKLYMFIEIFL 314 (318)
Q Consensus 251 ~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~---~EN~~Lrael~~Lr~kl~~~e~~v~ 314 (318)
.||+..+++|+...+.|..+...+...+.+|++++.... .=-..|...-..|..||+.||+.|.
T Consensus 406 E~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAlGAE~MV~qLtdknlnlEekVklLeetv~ 472 (1243)
T KOG0971|consen 406 EKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAALGAEEMVEQLTDKNLNLEEKVKLLEETVG 472 (1243)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHhhccCHHHHHHHHHHHHH
Confidence 445555555555555555555555555556655554321 1112233333445555555555554
No 343
>KOG3156 consensus Uncharacterized membrane protein [Function unknown]
Probab=60.75 E-value=50 Score=31.38 Aligned_cols=39 Identities=21% Similarity=0.406 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 269 AEHSSLLKGLTDV-NQKYDESAVNNRILKADIETLRAKLY 307 (318)
Q Consensus 269 ~EN~~L~~~l~~L-~qk~~~l~~EN~~Lrael~~Lr~kl~ 307 (318)
..-..++.++..+ ..++..+..||..|+.+++.|+..|.
T Consensus 101 ~~f~kiRsel~S~e~sEF~~lr~e~EklkndlEk~ks~lr 140 (220)
T KOG3156|consen 101 VDFAKIRSELVSIERSEFANLRAENEKLKNDLEKLKSSLR 140 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455555444 56678888888888888888887764
No 344
>PRK10698 phage shock protein PspA; Provisional
Probab=60.64 E-value=1.1e+02 Score=28.49 Aligned_cols=49 Identities=12% Similarity=0.022 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 262 TQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFI 310 (318)
Q Consensus 262 ~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e 310 (318)
.++..|+.+.......+..|..++..|...=..+|.+-..|-+|.+.++
T Consensus 99 ~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~ 147 (222)
T PRK10698 99 DLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAAS 147 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555555555555555544444
No 345
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.55 E-value=90 Score=35.09 Aligned_cols=15 Identities=13% Similarity=0.257 Sum_probs=12.0
Q ss_pred CCCcchhHHHHHHhh
Q 021065 31 NRSQSEWELEKFLQE 45 (318)
Q Consensus 31 nrs~SEW~FqkfLeE 45 (318)
-||+==+||+-||=+
T Consensus 386 lRcAv~ycf~s~l~d 400 (970)
T KOG0946|consen 386 LRCAVLYCFRSYLYD 400 (970)
T ss_pred HHHHHHHHHHHHHhc
Confidence 378888999988765
No 346
>PF11500 Cut12: Spindle pole body formation-associated protein; InterPro: IPR021589 This is the central coiled-coil region of cut12 also found in other fungi, barring S. cerevisiae. The full protein has two predicted coiled-coil regions, and one consensus phosphorylation site for p34cdc2 and two for MAP kinase. During Schizosaccharomyces japonicus yFS275 mitosis, the duplicated spindle pole bodies (SPBs) nucleate microtubule arrays that interdigitate to form the mitotic spindle. Cut12 is localised to the SPB throughout the cell cycle, predominantly around the inner face of the interphase SPB, adjacent to the nucleus []. Cut12 associates with Fin1 and is important in this context for the activity of Plo1 [].
Probab=60.34 E-value=78 Score=28.47 Aligned_cols=57 Identities=11% Similarity=0.237 Sum_probs=43.4
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 231 VDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDE 287 (318)
Q Consensus 231 ~e~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~ 287 (318)
.-.+..+++++.|.-|+-.=++|-....+|..++...+.....+..+|+.+..++..
T Consensus 81 ~a~~Em~KLi~yk~~aKsyAkkKD~Ea~~L~~KLkeEq~kv~~ME~~v~elas~m~~ 137 (152)
T PF11500_consen 81 KAEKEMEKLIKYKQLAKSYAKKKDAEAMRLAEKLKEEQEKVAEMERHVTELASQMAS 137 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667788888888888888888888888888887777777777777766555443
No 347
>PRK10963 hypothetical protein; Provisional
Probab=60.05 E-value=24 Score=32.63 Aligned_cols=43 Identities=26% Similarity=0.197 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 261 ETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLY 307 (318)
Q Consensus 261 E~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~ 307 (318)
|.|++.|+.+|..|..++..|. ....+|..|-.++..|.-+|-
T Consensus 43 ErQ~~~LR~r~~~Le~~l~~Li----~~A~~Ne~l~~~~~~l~l~Ll 85 (223)
T PRK10963 43 EWQMARQRNHIHVLEEEMTLLM----EQAIANEDLFYRLLPLQSRLA 85 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHh
Confidence 4455555555555555555433 344556666555555555543
No 348
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=59.88 E-value=1.1e+02 Score=35.07 Aligned_cols=76 Identities=20% Similarity=0.231 Sum_probs=47.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021065 242 NRESARRSRRRKQAHLNELETQAG-------QLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFL 314 (318)
Q Consensus 242 NRESArRSR~RKk~~l~eLE~qV~-------~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~ 314 (318)
-++.+.+--..|..++.+|+..+. .+-.++..|..++..+..+...+-.|-..|+..++.|..-|..+++.+.
T Consensus 419 e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~~~~dl~~~~~~L~ 498 (1200)
T KOG0964|consen 419 EIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWREEKKLRSLIANLEEDLSRAEKNLR 498 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555555554444 4444555555666666666666667777778888888888888877776
Q ss_pred hcc
Q 021065 315 GEN 317 (318)
Q Consensus 315 ~~~ 317 (318)
.++
T Consensus 499 ~~~ 501 (1200)
T KOG0964|consen 499 ATM 501 (1200)
T ss_pred Hhc
Confidence 655
No 349
>PRK04863 mukB cell division protein MukB; Provisional
Probab=59.82 E-value=1.5e+02 Score=35.35 Aligned_cols=46 Identities=13% Similarity=0.125 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETL 302 (318)
Q Consensus 257 l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~L 302 (318)
+++|+.++...+.+...+..++..+..++..+..+-..|+.++..+
T Consensus 357 LeELee~Lee~eeeLeeleeeleeleeEleelEeeLeeLqeqLael 402 (1486)
T PRK04863 357 LEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADY 402 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444433333333333333333
No 350
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=59.46 E-value=1.4e+02 Score=34.43 Aligned_cols=54 Identities=17% Similarity=0.194 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFI 310 (318)
Q Consensus 257 l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e 310 (318)
.+.|.-+++.|+.+...+..++..+..++..+..++..|++.+.....-+..+.
T Consensus 817 ~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~ 870 (1174)
T KOG0933|consen 817 YERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQ 870 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHH
Confidence 444555555555555555555555555555555555555554444444333333
No 351
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].
Probab=59.08 E-value=81 Score=27.37 Aligned_cols=26 Identities=19% Similarity=0.224 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021065 287 ESAVNNRILKADIETLRAKLYMFIEI 312 (318)
Q Consensus 287 ~l~~EN~~Lrael~~Lr~kl~~~e~~ 312 (318)
.+-+.|..||.+-..|..-|+.+|+.
T Consensus 39 el~~knqqLreQqk~L~e~i~~LE~R 64 (120)
T PF10482_consen 39 ELFSKNQQLREQQKTLHENIKVLENR 64 (120)
T ss_pred HHHcccHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444443
No 352
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=59.06 E-value=56 Score=27.34 Aligned_cols=36 Identities=17% Similarity=0.274 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 270 EHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (318)
Q Consensus 270 EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~k 305 (318)
.+..|..++..+.+++..+...+..++.++..|+..
T Consensus 81 ~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E 116 (118)
T PF13815_consen 81 QLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKE 116 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444444444444444444444444443
No 353
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=58.95 E-value=60 Score=26.58 Aligned_cols=40 Identities=20% Similarity=0.294 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 264 AGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (318)
Q Consensus 264 V~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~k 305 (318)
|-..-.||-.|+.++..++.=+ ..-+...|-+++..|+.+
T Consensus 46 vtr~A~EN~rL~ee~rrl~~f~--~~gerE~l~~eis~L~~~ 85 (86)
T PF12711_consen 46 VTRFAMENIRLREELRRLQSFY--VEGEREMLLQEISELRDQ 85 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHhh
Confidence 4466678888888887766555 455777788888888765
No 354
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=58.95 E-value=92 Score=29.17 Aligned_cols=20 Identities=30% Similarity=0.331 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 021065 257 LNELETQAGQLRAEHSSLLK 276 (318)
Q Consensus 257 l~eLE~qV~~L~~EN~~L~~ 276 (318)
+++|+.+++.+......|..
T Consensus 83 ~qeLe~~L~~~~qk~~tl~e 102 (203)
T KOG3433|consen 83 LQELESQLATGSQKKATLGE 102 (203)
T ss_pred HHHHHHHHHHhhhhHhHHHH
Confidence 34444444444444333333
No 355
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=58.80 E-value=54 Score=36.91 Aligned_cols=24 Identities=17% Similarity=0.171 Sum_probs=16.3
Q ss_pred chHHHHHHHHHHhHHHHHHHHHHH
Q 021065 230 SVDDKRARRMLSNRESARRSRRRK 253 (318)
Q Consensus 230 ~~e~KR~RR~lsNRESArRSR~RK 253 (318)
.++.+++-|.+.|+-.-+.+-..|
T Consensus 101 lk~~~sQiriLQn~c~~lE~ekq~ 124 (1265)
T KOG0976|consen 101 LKHHESQIRILQNKCLRLEMEKQK 124 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777778888877666655444
No 356
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=58.76 E-value=1.2e+02 Score=26.28 Aligned_cols=47 Identities=17% Similarity=0.252 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 254 QAHLNELETQAGQLRAEH-SSLLKGLTDVNQKYDESAVNNRILKADIE 300 (318)
Q Consensus 254 k~~l~eLE~qV~~L~~EN-~~L~~~l~~L~qk~~~l~~EN~~Lrael~ 300 (318)
+..+..|+.....|..|. ..+..++.+|---+..+...|..+|..+.
T Consensus 61 ~~~~~~l~~~~~kl~~E~~~~~q~EldDLL~ll~Dle~K~~kyk~rLk 108 (136)
T PF04871_consen 61 ASEVKELEAEKEKLKEEARKEAQSELDDLLVLLGDLEEKRKKYKERLK 108 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHH
Confidence 333444444444444333 33444444444444444444444444333
No 357
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=58.70 E-value=81 Score=33.89 Aligned_cols=40 Identities=8% Similarity=0.198 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRIL 295 (318)
Q Consensus 256 ~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~L 295 (318)
|+..++.+...+......|..++.....++..+..+|..|
T Consensus 281 y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~L 320 (581)
T KOG0995|consen 281 YVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDEL 320 (581)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444433444333444444443333344444444444
No 358
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=58.58 E-value=89 Score=26.69 Aligned_cols=7 Identities=29% Similarity=0.534 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 021065 264 AGQLRAE 270 (318)
Q Consensus 264 V~~L~~E 270 (318)
+..++.+
T Consensus 57 l~~~r~~ 63 (150)
T PF07200_consen 57 LEELRSQ 63 (150)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 359
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=58.56 E-value=12 Score=26.96 Aligned_cols=37 Identities=19% Similarity=0.133 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 270 EHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKL 306 (318)
Q Consensus 270 EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl 306 (318)
.|.+|.+....+..++..++.+...|..+...||.++
T Consensus 8 qn~~laK~Ns~l~~ki~~le~~~s~L~~en~~lR~~~ 44 (46)
T PF07558_consen 8 QNRELAKRNSALSIKIQELENEVSKLLNENVNLRELV 44 (46)
T ss_dssp ----------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHhHhHHHHhHHHHHHhHHHHHHHHHHHHHHHh
Confidence 3444444455555555555555555555555555443
No 360
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=58.03 E-value=1e+02 Score=28.69 Aligned_cols=13 Identities=38% Similarity=0.399 Sum_probs=5.4
Q ss_pred HHHHHHHHHhhhh
Q 021065 303 RAKLYMFIEIFLG 315 (318)
Q Consensus 303 r~kl~~~e~~v~~ 315 (318)
|.+-.|+.+++-.
T Consensus 169 rk~krmf~ei~d~ 181 (201)
T KOG4603|consen 169 RKRKRMFREIIDK 181 (201)
T ss_pred HHHHHHHHHHHHH
Confidence 3333444444433
No 361
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=58.01 E-value=46 Score=32.46 Aligned_cols=67 Identities=15% Similarity=0.281 Sum_probs=42.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 234 KRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (318)
Q Consensus 234 KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~ 304 (318)
|-.-.-|+|||..=..++++++.| ..++..|+...- -..+|..|++++..++.+|-+..+++..+.+
T Consensus 127 R~~LK~IR~~E~sl~p~R~~r~~l---~d~I~kLk~k~P-~s~kl~~LeqELvraEae~lvaEAqL~n~kR 193 (271)
T PF13805_consen 127 RIHLKSIRNREESLQPSRDRRRKL---QDEIAKLKYKDP-QSPKLVVLEQELVRAEAENLVAEAQLSNIKR 193 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH-T-TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHhHHH---HHHHHHHHhcCC-CChHHHHHHHHHHHHHHHhhHHHHHHHHhhH
Confidence 344456788887655444444433 344444443322 2457788888888888888888888877643
No 362
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=57.83 E-value=51 Score=34.43 Aligned_cols=36 Identities=14% Similarity=0.066 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 021065 280 DVNQKYDESAVNNRILKADIETLRAKLYMFIEIFLG 315 (318)
Q Consensus 280 ~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~ 315 (318)
.++-+.+.++.||..||..+..|+.-+..+.+--+|
T Consensus 301 nlqmr~qqleeentelRs~~arlksl~dklaee~qr 336 (502)
T KOG0982|consen 301 NLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQR 336 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 455567778888888888888888877776655444
No 363
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=57.60 E-value=33 Score=33.20 Aligned_cols=41 Identities=20% Similarity=0.231 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADI 299 (318)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael 299 (318)
.++.++..+.+.|+.++.++... ..+...++.||..||..+
T Consensus 66 ~~~~~~~~en~~Lk~~l~~~~~~----~~~~~~l~~EN~~Lr~lL 106 (284)
T COG1792 66 KSLKDLALENEELKKELAELEQL----LEEVESLEEENKRLKELL 106 (284)
T ss_pred HHhHHHHHHhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHh
Confidence 33444444444444444333222 233455666666666543
No 364
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=57.49 E-value=72 Score=32.33 Aligned_cols=59 Identities=20% Similarity=0.194 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhh
Q 021065 257 LNELETQAGQLRAEHSSLLKGLTDV------------NQKYDESAVNNR-ILKADIETLRAKLYMFIEIFLG 315 (318)
Q Consensus 257 l~eLE~qV~~L~~EN~~L~~~l~~L------------~qk~~~l~~EN~-~Lrael~~Lr~kl~~~e~~v~~ 315 (318)
+.+|+.++..|+.+...+..++..+ +.++..+..+.. .+..++.+++.++..++..+..
T Consensus 238 ~~~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~l~~ 309 (457)
T TIGR01000 238 LATIQQQIDQLQKSIASYQVQKAGLTKSTASNYASSQNSKLAQLKEQQLAKVKQEITDLNQKLLELESKIKS 309 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555543 444444544444 6788888888888888877654
No 365
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=57.42 E-value=57 Score=35.24 Aligned_cols=25 Identities=28% Similarity=0.473 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 258 NELETQAGQLRAEHSSLLKGLTDVN 282 (318)
Q Consensus 258 ~eLE~qV~~L~~EN~~L~~~l~~L~ 282 (318)
..|..++..|+.++..|..++..|.
T Consensus 506 ~~L~~~~~~Le~e~~~L~~~~~~Le 530 (722)
T PF05557_consen 506 NELQKEIEELERENERLRQELEELE 530 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555444444444
No 366
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=57.34 E-value=1.3e+02 Score=26.08 Aligned_cols=38 Identities=11% Similarity=0.149 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 021065 280 DVNQKYDESAVNNRILKADIETLRAKLYMFIEIFLGEN 317 (318)
Q Consensus 280 ~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~~~ 317 (318)
.|..+...++..-..|..+...|+.++..+...|....
T Consensus 74 eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~l 111 (119)
T COG1382 74 ELEERKETLELRIKTLEKQEEKLQERLEELQSEIQKAL 111 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455555566666666666666666666666665543
No 367
>PLN02939 transferase, transferring glycosyl groups
Probab=57.28 E-value=89 Score=35.64 Aligned_cols=35 Identities=29% Similarity=0.296 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 021065 281 VNQKYDESAVNNRILKADIETLRAKLYMFIEIFLG 315 (318)
Q Consensus 281 L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~ 315 (318)
|.+++..+..||..||.+++.|.+++...-++=.+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (977)
T PLN02939 224 LSKELDVLKEENMLLKDDIQFLKAELIEVAETEER 258 (977)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHH
Confidence 56778888999999999999999998776655444
No 368
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=57.12 E-value=11 Score=40.56 Aligned_cols=33 Identities=18% Similarity=0.126 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 021065 283 QKYDESAVNNRILKADIETLRAKLYMFIEIFLG 315 (318)
Q Consensus 283 qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~ 315 (318)
+++..|..+|..|..++..|+.++..+|.-|.+
T Consensus 503 e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~ 535 (722)
T PF05557_consen 503 EELNELQKEIEELERENERLRQELEELESELEK 535 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556667777777777777777777766655
No 369
>PLN02320 seryl-tRNA synthetase
Probab=57.09 E-value=1.6e+02 Score=31.09 Aligned_cols=58 Identities=21% Similarity=0.160 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021065 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYD---------ESAVNNRILKADIETLRAKLYMFIEIF 313 (318)
Q Consensus 256 ~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~---------~l~~EN~~Lrael~~Lr~kl~~~e~~v 313 (318)
.+..|..+...+..+...|+.+...+..++. .+..+-+.|+.++..|..++..+++.+
T Consensus 94 ~l~~ld~~~r~~~~~~~~lr~ern~~sk~i~~~~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l 160 (502)
T PLN02320 94 LVLELYENMLALQKEVERLRAERNAVANKMKGKLEPSERQALVEEGKNLKEGLVTLEEDLVKLTDEL 160 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444443332 333344455555555555555555444
No 370
>PRK14160 heat shock protein GrpE; Provisional
Probab=57.08 E-value=70 Score=30.07 Aligned_cols=42 Identities=14% Similarity=0.287 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKA 297 (318)
Q Consensus 256 ~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lra 297 (318)
.+..|+.++..|+.++..|..++..++.++..+.++..-+|.
T Consensus 55 ~~~~l~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RK 96 (211)
T PRK14160 55 KIEELKDENNKLKEENKKLENELEALKDRLLRTVAEYDNYRK 96 (211)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666667777777777777776666665554444433
No 371
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=56.63 E-value=52 Score=34.56 Aligned_cols=46 Identities=17% Similarity=0.252 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIET 301 (318)
Q Consensus 256 ~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~ 301 (318)
+...+...+..|+.....+..++..+..++..+...-+.|+.+++.
T Consensus 447 ~~~k~~~~~~~l~~kr~e~~~e~~~l~pkL~~l~~~Tr~Lq~~iE~ 492 (507)
T PF05600_consen 447 QEEKLRRKREDLEEKRQEAQEEQQELEPKLDALVERTRELQKQIEA 492 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555555555555555555555555555544
No 372
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=56.57 E-value=1.2e+02 Score=25.59 Aligned_cols=44 Identities=18% Similarity=0.220 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 268 RAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIE 311 (318)
Q Consensus 268 ~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~ 311 (318)
+..+..|..+|..-.+.+..+..||..|.=....|..+|..+.+
T Consensus 25 Q~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~ 68 (102)
T PF10205_consen 25 QAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQE 68 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444444433
No 373
>PF13166 AAA_13: AAA domain
Probab=56.56 E-value=1.6e+02 Score=31.15 Aligned_cols=59 Identities=15% Similarity=0.186 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 021065 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFLG 315 (318)
Q Consensus 257 l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~ 315 (318)
+..+...+..+..+...+...+..+..+...+..+-..++.++.+|+.++...+..+.+
T Consensus 405 ~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~ 463 (712)
T PF13166_consen 405 IAKLKEDIEEYQKEIKELEKEINSLEKKLKKAKEEIKKIEKEIKELEAQLKNTEPAADR 463 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 33444444444555555555566666666666666666666666666666654444443
No 374
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=56.54 E-value=82 Score=33.49 Aligned_cols=59 Identities=15% Similarity=0.152 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021065 255 AHLNELETQAGQLRAEHSSLLKGLTDV---N----QKYDESAVNNRILKADIETLRAKLYMFIEIF 313 (318)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L---~----qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v 313 (318)
..++.||.++..|+.+...|..++..- . .++..+..+-..++.+++.|-.+-..+++.+
T Consensus 563 ~~~~~~e~~i~~le~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~w~~l~~~~ 628 (638)
T PRK10636 563 KEIARLEKEMEKLNAQLAQAEEKLGDSELYDQSRKAELTACLQQQASAKSGLEECEMAWLEAQEQL 628 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCchhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778888888888887777777532 1 1455555566666666666666666665543
No 375
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=56.54 E-value=1.4e+02 Score=26.76 Aligned_cols=48 Identities=17% Similarity=0.313 Sum_probs=24.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 241 SNRESARRSRRRKQAHLNELET-------QAGQLRAEHSSLLKGLTDVNQKYDES 288 (318)
Q Consensus 241 sNRESArRSR~RKk~~l~eLE~-------qV~~L~~EN~~L~~~l~~L~qk~~~l 288 (318)
.+-+.|...-.||++.++.|.. ++..++.+...+..++..++.++..+
T Consensus 135 ~~~~~a~~~l~kkk~~~~kl~~~~~~~~~k~~~~~~ei~~~~~~~~~~~~~~~~i 189 (236)
T PF09325_consen 135 IEYQNAEKELQKKKAQLEKLKASGKNRQDKVEQAENEIEEAERRVEQAKDEFEEI 189 (236)
T ss_pred HHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555555555544442 24455555555555555555555554
No 376
>PF14282 FlxA: FlxA-like protein
Probab=56.20 E-value=48 Score=27.48 Aligned_cols=22 Identities=18% Similarity=0.184 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 021065 285 YDESAVNNRILKADIETLRAKL 306 (318)
Q Consensus 285 ~~~l~~EN~~Lrael~~Lr~kl 306 (318)
...|..+=..|.++|..|....
T Consensus 53 ~q~Lq~QI~~LqaQI~qlq~q~ 74 (106)
T PF14282_consen 53 IQLLQAQIQQLQAQIAQLQSQQ 74 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444433
No 377
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=56.11 E-value=75 Score=29.54 Aligned_cols=30 Identities=17% Similarity=0.019 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 021065 287 ESAVNNRILKADIETLRAKLYMFIEIFLGE 316 (318)
Q Consensus 287 ~l~~EN~~Lrael~~Lr~kl~~~e~~v~~~ 316 (318)
++..+-..|+.++...+.+|..+..-..-|
T Consensus 120 emQe~i~~L~kev~~~~erl~~~k~g~~~v 149 (201)
T KOG4603|consen 120 EMQEEIQELKKEVAGYRERLKNIKAGTNHV 149 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 344555567777777777776665544433
No 378
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=56.07 E-value=37 Score=34.02 Aligned_cols=31 Identities=16% Similarity=0.313 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Q 021065 266 QLRAEHSSLLKGLTDVNQK---YDESAVNNRILK 296 (318)
Q Consensus 266 ~L~~EN~~L~~~l~~L~qk---~~~l~~EN~~Lr 296 (318)
.|..||+.|++++..|+.+ +..+..||..|+
T Consensus 61 ~L~~EN~~Lk~Ena~L~~~l~~~e~l~~En~~Lr 94 (337)
T PRK14872 61 VLETENFLLKERIALLEERLKSYEEANQTPPLFS 94 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444332 333445555444
No 379
>PLN02678 seryl-tRNA synthetase
Probab=56.04 E-value=1.2e+02 Score=31.55 Aligned_cols=63 Identities=16% Similarity=0.126 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhhc
Q 021065 254 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAV---NNRILKADIETLRAKLYMFIEIFLGE 316 (318)
Q Consensus 254 k~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~---EN~~Lrael~~Lr~kl~~~e~~v~~~ 316 (318)
-..+-.|..+...|..+...|+.+...+..++..+.. +-..|++++..|..+++.+|..++.+
T Consensus 32 id~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~~le~~~~~~ 97 (448)
T PLN02678 32 VDEVIALDKEWRQRQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEKEAEVQEA 97 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677777777777777787777777777765321 22467778888888888888777653
No 380
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=56.03 E-value=1.7e+02 Score=34.05 Aligned_cols=59 Identities=15% Similarity=0.088 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhh
Q 021065 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILK----ADIETLRAKLYMFIEIF 313 (318)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lr----ael~~Lr~kl~~~e~~v 313 (318)
..|++|..++..+..+...+..++..+..++..+..+...++ .....++.++..+...|
T Consensus 888 ~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 950 (1311)
T TIGR00606 888 EQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKV 950 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555555555555544444432 23333444444444433
No 381
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=55.98 E-value=60 Score=34.33 Aligned_cols=56 Identities=14% Similarity=0.165 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021065 257 LNELETQAGQLRAEHSSLLKGLTDVN------QKYDESAVNNRILKADIETLRAKLYMFIEI 312 (318)
Q Consensus 257 l~eLE~qV~~L~~EN~~L~~~l~~L~------qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~ 312 (318)
++.||.++..|+.+...|..++..-. .++..+..+-..++.+++.|..+-..++++
T Consensus 570 ~~~~e~~i~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 631 (635)
T PRK11147 570 LEQLPQLLEDLEAEIEALQAQVADADFFSQPHEQTQKVLADLADAEQELEVAFERWEELEAL 631 (635)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCchhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 88899999999999888888875421 156666777777777777777777766643
No 382
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=55.91 E-value=78 Score=32.96 Aligned_cols=56 Identities=27% Similarity=0.364 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 253 KQAHLNELETQAG--------------QLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYM 308 (318)
Q Consensus 253 Kk~~l~eLE~qV~--------------~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~ 308 (318)
|++|-++|+.+++ +...+.+.+..+|+-|.++|...-.||..|-+.+++-|..|..
T Consensus 391 KnAhrEEmeRELeKsqSvnsdveaLRrQyleelqsvqRELeVLSEQYSQKCLEnahLaqalEaerqaLRq 460 (593)
T KOG4807|consen 391 KNAHREEMERELEKSQSVNSDVEALRRQYLEELQSVQRELEVLSEQYSQKCLENAHLAQALEAERQALRQ 460 (593)
T ss_pred HHHHHHHHHHHHHhhhccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 383
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=55.67 E-value=65 Score=35.70 Aligned_cols=55 Identities=18% Similarity=0.242 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021065 260 LETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFL 314 (318)
Q Consensus 260 LE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~ 314 (318)
|+.++..+..-|..+..++......+..+...-..+.+++..|+.|+..||.-|.
T Consensus 636 Lq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~~~e~E~~~l~~Ki~~Le~Ele 690 (769)
T PF05911_consen 636 LQSELESAKESNSLAETQLKAMKESYESLETRLKDLEAEAEELQSKISSLEEELE 690 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333344444444455555566666666667778888888888877664
No 384
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=55.64 E-value=48 Score=27.16 Aligned_cols=39 Identities=15% Similarity=0.240 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Q 021065 263 QAGQLRAEHSSLLKGLTDVNQK--YDESAVNNRILKADIET 301 (318)
Q Consensus 263 qV~~L~~EN~~L~~~l~~L~qk--~~~l~~EN~~Lrael~~ 301 (318)
++.+++.+|+.|.++++.|..+ ......+|...|++.++
T Consensus 24 k~~ka~~~~~kL~~en~qlk~Ek~~~~~qvkn~~vrqknee 64 (87)
T PF10883_consen 24 KVKKAKKQNAKLQKENEQLKTEKAVAETQVKNAKVRQKNEE 64 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3344444444444444444332 23445666666666554
No 385
>PRK11546 zraP zinc resistance protein; Provisional
Probab=55.58 E-value=70 Score=28.44 Aligned_cols=50 Identities=24% Similarity=0.240 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (318)
Q Consensus 256 ~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~k 305 (318)
.+.+|..++-.-+.|...|...-.-=.+++..+..|...|+.++.++|.+
T Consensus 62 ~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~r~~ 111 (143)
T PRK11546 62 QTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSLDELRVK 111 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444333333455666777777777777766653
No 386
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=55.53 E-value=2.2e+02 Score=28.46 Aligned_cols=54 Identities=28% Similarity=0.416 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------HHHHHHHHHHHHHHHHHHHHH
Q 021065 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDE-----------------------------SAVNNRILKADIETLRAKLYM 308 (318)
Q Consensus 258 ~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~-----------------------------l~~EN~~Lrael~~Lr~kl~~ 308 (318)
+.|+.++.+|+.||--|+.+|.++..+... |+-.|..|-.+...|+.++..
T Consensus 217 es~eERL~QlqsEN~LLrQQLddA~~K~~~kek~ViniQ~~f~d~~~~L~ae~ekq~lllEErNKeL~ne~n~LkEr~~q 296 (305)
T PF14915_consen 217 ESLEERLSQLQSENMLLRQQLDDAHNKADNKEKTVINIQDQFQDIVKKLQAESEKQVLLLEERNKELINECNHLKERLYQ 296 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 678899999999999999999887665321 445566666666666666665
Q ss_pred HHH
Q 021065 309 FIE 311 (318)
Q Consensus 309 ~e~ 311 (318)
.|.
T Consensus 297 yEk 299 (305)
T PF14915_consen 297 YEK 299 (305)
T ss_pred HHH
Confidence 554
No 387
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=55.51 E-value=83 Score=33.06 Aligned_cols=62 Identities=13% Similarity=0.146 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021065 253 KQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFL 314 (318)
Q Consensus 253 Kk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~ 314 (318)
...|++.|...+.+....-..+......+.++..++..+-..|+-++..|.++.+.+...|.
T Consensus 430 SprYvdrl~~~L~qk~~~~~k~~~~~~~l~~kr~e~~~e~~~l~pkL~~l~~~Tr~Lq~~iE 491 (507)
T PF05600_consen 430 SPRYVDRLVESLQQKLKQEEKLRRKREDLEEKRQEAQEEQQELEPKLDALVERTRELQKQIE 491 (507)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 35788999999988888888999999999999999999999999999999888888776553
No 388
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=55.39 E-value=99 Score=30.18 Aligned_cols=30 Identities=17% Similarity=0.083 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021065 285 YDESAVNNRILKADIETLRAKLYMFIEIFL 314 (318)
Q Consensus 285 ~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~ 314 (318)
..++....+.||.+...|+.+++.+.+-+.
T Consensus 204 ~~e~~~r~~~lr~~~~~l~~el~~aK~~~~ 233 (264)
T PF07246_consen 204 HEELEARESGLRNESKWLEHELSDAKEDMI 233 (264)
T ss_pred HHHHHHhHhhhHHHHHHHHHHHHHHHHHHH
Confidence 334444555556666666666665554443
No 389
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=55.38 E-value=1.1e+02 Score=26.72 Aligned_cols=49 Identities=6% Similarity=0.063 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021065 266 QLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFL 314 (318)
Q Consensus 266 ~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~ 314 (318)
+|......|-.++.+..+-......|-..++.++..++..+..+..+|.
T Consensus 65 hLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~ 113 (126)
T PF07889_consen 65 HLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVE 113 (126)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333444444444444444444443
No 390
>PF10359 Fmp27_WPPW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019449 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a domain within FMP27 that contains characteristic HQR and WPPW sequence motifs.
Probab=55.31 E-value=42 Score=34.62 Aligned_cols=54 Identities=24% Similarity=0.208 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 256 HLNELETQAGQLRAEHSSLLK--GLTDVNQKYDESAVNNRILKADIETLRAKLYMF 309 (318)
Q Consensus 256 ~l~eLE~qV~~L~~EN~~L~~--~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~ 309 (318)
++.+|+.++..++.....+.. .-..+..++..+..+-..|+..+.-|+.-+..+
T Consensus 171 Rl~~L~~qi~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~l 226 (475)
T PF10359_consen 171 RLDELEEQIEKHEEKLGELELNPDDPELKSDIEELERHISSLKERIEFLENMLEDL 226 (475)
T ss_pred HHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666655544432 222233333344444444444444444433333
No 391
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=55.10 E-value=51 Score=28.83 Aligned_cols=52 Identities=6% Similarity=0.038 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 260 LETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIE 311 (318)
Q Consensus 260 LE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~ 311 (318)
|..++..++..+......+..|+.++..-..|-..||.++..+......+|+
T Consensus 78 l~a~~~e~qsli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n~~Lek 129 (131)
T PF04859_consen 78 LAAEIQEQQSLIKTYEIVVKKLEAELRAKDSEIDRLREKLDELNRANKSLEK 129 (131)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4444444444444444444555555555555555566666666555555554
No 392
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=55.09 E-value=72 Score=33.48 Aligned_cols=55 Identities=29% Similarity=0.341 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHH-----------HHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHHHH
Q 021065 255 AHLNELETQAGQLRA-----------EHSSLLKGLTDVN------------------------QKYDESAVNNRILKADI 299 (318)
Q Consensus 255 ~~l~eLE~qV~~L~~-----------EN~~L~~~l~~L~------------------------qk~~~l~~EN~~Lrael 299 (318)
..+..|-.++..|+. ||..|+.+|.+.- .++..++.||..|++++
T Consensus 385 rF~~slaaEiSalr~erEkEr~~l~~eNk~L~~QLrDTAEAVqAagEllvrl~eaeea~~~a~~r~~~~eqe~ek~~kqi 464 (488)
T PF06548_consen 385 RFINSLAAEISALRAEREKERRFLKDENKGLQIQLRDTAEAVQAAGELLVRLREAEEAASVAQERAMDAEQENEKAKKQI 464 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666665555 8888887776433 34556678999999999
Q ss_pred HHHHHHHHHH
Q 021065 300 ETLRAKLYMF 309 (318)
Q Consensus 300 ~~Lr~kl~~~ 309 (318)
+.|..|-.+=
T Consensus 465 ekLK~kh~~E 474 (488)
T PF06548_consen 465 EKLKRKHKME 474 (488)
T ss_pred HHHHHHHHHH
Confidence 9998887653
No 393
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=55.03 E-value=1.5e+02 Score=28.91 Aligned_cols=12 Identities=17% Similarity=0.589 Sum_probs=7.7
Q ss_pred ChHHHHHHHHhh
Q 021065 110 DSDEYRAYLKTK 121 (318)
Q Consensus 110 Dp~~y~a~Lk~k 121 (318)
|-.....+|+++
T Consensus 65 ~~~~~~e~L~Sr 76 (362)
T TIGR01010 65 DTYTVQEYMRSR 76 (362)
T ss_pred cHHHHHHHHhhH
Confidence 444555788877
No 394
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=54.86 E-value=1.1e+02 Score=27.80 Aligned_cols=63 Identities=11% Similarity=0.112 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhhcc
Q 021065 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRI-LKADIETLRAKLYMFIEIFLGEN 317 (318)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~-Lrael~~Lr~kl~~~e~~v~~~~ 317 (318)
..+.+...+++.|+.....|...++.+.+++.-+..+|.. ++..+++|...|..++.++..++
T Consensus 72 k~~~~~~eelerLe~~iKdl~~lye~Vs~d~Npf~s~~~qes~~~veel~eqV~el~~i~emv~ 135 (157)
T COG3352 72 KQLQDIKEELERLEENIKDLVSLYELVSRDFNPFMSKTPQESRGIVEELEEQVNELKMIVEMVI 135 (157)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3457888899999999999999999999999888877754 45568999999988888776553
No 395
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=54.81 E-value=21 Score=29.77 Aligned_cols=55 Identities=16% Similarity=0.157 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 257 LNELETQAGQLRAEH-SSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIE 311 (318)
Q Consensus 257 l~eLE~qV~~L~~EN-~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~ 311 (318)
...++.++..|.... .+-.+.+...+.....+...|..|+.++...+..|..++.
T Consensus 17 ~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~k~~~le~~l~e~~~~l~~lq~ 72 (100)
T PF06428_consen 17 KEQIESELEELTASLFEEANKMVADARRERAALEEKNEQLEKQLKEKEALLESLQA 72 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHCHCCCHCTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555444322 2223344555566667777777777766665555444433
No 396
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=54.78 E-value=2.4e+02 Score=29.67 Aligned_cols=80 Identities=14% Similarity=0.096 Sum_probs=0.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021065 236 ARRMLSNRESARRSRRRKQAHLNELETQAGQLR---AEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEI 312 (318)
Q Consensus 236 ~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~---~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~ 312 (318)
..+....+..-.+.+......+..++.++..+. .+...+..++..++.++..+..+++.|+.+++..+......-..
T Consensus 24 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~le~~~~~~~ek~~~ 103 (475)
T PRK10361 24 SYQHAQQKAEQLAEREEMVAELSAAKQQITQSEHWRAECELLNNEVRSLQSINTSLEADLREVTTRMEAAQQHADDKIRQ 103 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhh
Q 021065 313 FLG 315 (318)
Q Consensus 313 v~~ 315 (318)
+..
T Consensus 104 l~~ 106 (475)
T PRK10361 104 MIN 106 (475)
T ss_pred HHH
No 397
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=54.78 E-value=87 Score=25.58 Aligned_cols=39 Identities=18% Similarity=0.289 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETL 302 (318)
Q Consensus 257 l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~L 302 (318)
|..|..-+..|+..|..|..+ ++.|...|+..|.++.+.
T Consensus 35 LD~Lns~LD~LE~rnD~l~~~-------L~~LLesnrq~R~e~~~~ 73 (83)
T PF03670_consen 35 LDQLNSCLDHLEQRNDHLHAQ-------LQELLESNRQIRLEFQEQ 73 (83)
T ss_pred HHHHHHHHHHHHHhhhHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443 444556666666655443
No 398
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=54.50 E-value=80 Score=28.23 Aligned_cols=25 Identities=24% Similarity=0.215 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q 021065 290 VNNRILKADIETLRAKLYMFIEIFL 314 (318)
Q Consensus 290 ~EN~~Lrael~~Lr~kl~~~e~~v~ 314 (318)
.++..+..+++.|..+|...+..+.
T Consensus 154 ~~~~~~~~ei~~lk~el~~~~~~~~ 178 (192)
T PF05529_consen 154 EENKKLSEEIEKLKKELEKKEKEIE 178 (192)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 4445555566666655555554443
No 399
>PF03245 Phage_lysis: Bacteriophage Rz lysis protein; InterPro: IPR004929 Many bacteriophages with Gram-negative hosts contain two auxiliary lysis genes Rz and Rz1. These genes are nested, with Rz1 occupying the last third of Rz in a +1 reading frame. Both of these genes are required for host cell lysis if the outer membrane is stabilised by millimolar concentrations of divalent cations, but are otherwise uneccessary []. The Rz protein is believed to posses endopeptidase activity, while Rz1 encodes a prolipoprotein which, after cleavage by a signal peptidase, is located in the outer membrane. It has been suggested that these two proteins may form a complex which cleaves the oligopeptide crosslinks between glycosidic strands in the peptidoglycan and the Lpp lipoproteins of the outer bacterial membrane. For more information see []. This entry represents the Rz protein and related sequences. This family is not considered to be a peptidase according to the MEROPs database.; GO: 0019835 cytolysis
Probab=54.44 E-value=1.2e+02 Score=25.83 Aligned_cols=49 Identities=12% Similarity=0.150 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR 303 (318)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr 303 (318)
+.+......+..++.....|..-=....+++..+..+|..|+.++..=+
T Consensus 14 ~~~~~~~~~i~~~~~~~~~la~ld~k~tkEL~~Ak~e~~~Lr~dl~aG~ 62 (125)
T PF03245_consen 14 AALEAANAAIEDMQQRQQALAALDAKYTKELADAKAEIDRLRADLAAGN 62 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHcCC
Confidence 3344444444444443333333333445566677788888887776533
No 400
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=54.27 E-value=1.4e+02 Score=31.54 Aligned_cols=59 Identities=12% Similarity=0.128 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 021065 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFLG 315 (318)
Q Consensus 257 l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~ 315 (318)
..+++.++..+..+...+..+...+...+..+..+-...+..+..++.++......|.+
T Consensus 378 ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l~k 436 (569)
T PRK04778 378 YSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKRYLEK 436 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555556666666666666666666666666667777766666655544
No 401
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=54.18 E-value=1.8e+02 Score=29.65 Aligned_cols=61 Identities=13% Similarity=0.198 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhhhh
Q 021065 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVN----NRILKADIETLRAKLYMFIEIFLG 315 (318)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~E----N~~Lrael~~Lr~kl~~~e~~v~~ 315 (318)
..+..|..+...|..+...|+.+...+.+++..+... -..|++++..|..+++.+|..++.
T Consensus 30 d~i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~ 94 (418)
T TIGR00414 30 EKLIALDDERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKA 94 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666777777777777777777776654322 246777778888888887776654
No 402
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=54.16 E-value=1.7e+02 Score=26.61 Aligned_cols=25 Identities=8% Similarity=0.157 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 021065 289 AVNNRILKADIETLRAKLYMFIEIF 313 (318)
Q Consensus 289 ~~EN~~Lrael~~Lr~kl~~~e~~v 313 (318)
..+...++..+.....-+..+..-+
T Consensus 141 ~~~~~~~~~~anrwTDNI~~l~~~~ 165 (188)
T PF03962_consen 141 KEEIKIAKEAANRWTDNIFSLKSYL 165 (188)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 3333333333333333333333333
No 403
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=54.05 E-value=29 Score=28.40 Aligned_cols=32 Identities=22% Similarity=0.235 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 273 SLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (318)
Q Consensus 273 ~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~ 304 (318)
.+..+...|..+++.+..+|..|..+|..+|+
T Consensus 77 ~~~~~~~~L~~~l~~l~~eN~~L~~~i~~~r~ 108 (109)
T PF03980_consen 77 YKKKEREQLNARLQELEEENEALAEEIQEQRK 108 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 35667778888888999999999999998875
No 404
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=53.96 E-value=1.8e+02 Score=33.06 Aligned_cols=18 Identities=11% Similarity=0.106 Sum_probs=10.5
Q ss_pred CCCcchhHHHHHHhhhhc
Q 021065 31 NRSQSEWELEKFLQEVTV 48 (318)
Q Consensus 31 nrs~SEW~FqkfLeE~~~ 48 (318)
++|..=-||-+|++=.-+
T Consensus 240 ~~~S~lqYfk~LI~IP~L 257 (980)
T KOG0980|consen 240 ADCSNLQYFKRLIQIPTL 257 (980)
T ss_pred HhcchhHHHHHHhcCCCC
Confidence 446666666666655444
No 405
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=53.89 E-value=1.4e+02 Score=27.94 Aligned_cols=30 Identities=13% Similarity=0.135 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021065 285 YDESAVNNRILKADIETLRAKLYMFIEIFL 314 (318)
Q Consensus 285 ~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~ 314 (318)
-+.+..|-..|..+-..++.+|..+..-|.
T Consensus 149 Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~ 178 (192)
T PF11180_consen 149 QQQARQEAQALEAERRAAQAQLRQLQRQVR 178 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444455555444443
No 406
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=53.85 E-value=52 Score=35.16 Aligned_cols=62 Identities=10% Similarity=0.037 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC
Q 021065 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFLGENG 318 (318)
Q Consensus 257 l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~~~~ 318 (318)
+.........+...|..|.++-..|..+|..+..+|.+++.--..|+.+.+.+++.+-+.+|
T Consensus 440 m~~i~~~m~e~~s~~~~le~eq~~l~~ey~~~~e~~~e~k~~~~~L~~~~~~~~~llgqi~~ 501 (707)
T KOG0957|consen 440 MSGISSFMQERDSQIIPLEEEQLRLSREYLAETEANQEKKSSQKHLVERFSANEELLGQILT 501 (707)
T ss_pred HHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHhhhh
Confidence 44445555555556666666777777788888888888888888899999888888877664
No 407
>PF14645 Chibby: Chibby family
Probab=53.63 E-value=51 Score=28.09 Aligned_cols=46 Identities=17% Similarity=0.244 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIE 300 (318)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~ 300 (318)
.....|..+..+|+.||.-|+-+++.|---+....+|-..+..+++
T Consensus 71 ~~~~~l~~~n~~L~EENN~Lklk~elLlDMLtettae~~l~ek~l~ 116 (116)
T PF14645_consen 71 EENQRLRKENQQLEEENNLLKLKIELLLDMLTETTAEAHLLEKELE 116 (116)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 408
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=53.60 E-value=1.7e+02 Score=32.69 Aligned_cols=43 Identities=21% Similarity=0.339 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 263 QAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (318)
Q Consensus 263 qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~k 305 (318)
+.+.|..|-..+++++..++..-..+.+++..|++++..|+..
T Consensus 217 ~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~~~ 259 (916)
T KOG0249|consen 217 DKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLRRS 259 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3455666666666777766666667777777777777777753
No 409
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=53.56 E-value=78 Score=33.66 Aligned_cols=67 Identities=12% Similarity=0.190 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHh
Q 021065 246 ARRSRRRKQAHLNELETQAGQLRAE-------HSSLLKGLTDVNQKYDE----SAVNNRILKADIETLRAKLYMFIEI 312 (318)
Q Consensus 246 ArRSR~RKk~~l~eLE~qV~~L~~E-------N~~L~~~l~~L~qk~~~----l~~EN~~Lrael~~Lr~kl~~~e~~ 312 (318)
++....-+++.+++++.+|+.|+.. ..+...++..|..+... +..-...|......|+..+..++.+
T Consensus 182 ~~~~~Lp~~~~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~~~~~l~~~~~~~~~~~~~lk~a 259 (555)
T TIGR03545 182 KRKKDLPNKQDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKADKQKIKSAKNDLQNDKKQLKADLAELKKA 259 (555)
T ss_pred HHHHhcCCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Confidence 3333333456788888888888775 22344455544444443 3333344444444455555544443
No 410
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=53.56 E-value=1.3e+02 Score=25.13 Aligned_cols=17 Identities=12% Similarity=0.294 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 021065 288 SAVNNRILKADIETLRA 304 (318)
Q Consensus 288 l~~EN~~Lrael~~Lr~ 304 (318)
++.+|+.|+.++..++.
T Consensus 27 le~eN~~l~~EL~kyk~ 43 (96)
T PF11365_consen 27 LEDENKQLTEELNKYKS 43 (96)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444444443
No 411
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=53.53 E-value=80 Score=29.33 Aligned_cols=53 Identities=13% Similarity=0.142 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021065 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFL 314 (318)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~ 314 (318)
..+..||.+|..|+..-..+...+..-. ..|..|+.++..|..+|+.+++-|-
T Consensus 79 ~lvinlE~kvD~lee~fdd~~d~l~~q~-------eq~~~~~~~v~~~~q~~~~l~~K~D 131 (189)
T TIGR02132 79 SLVINLEEKVDLIEEFFDDKFDELEAQQ-------EQAPALKKDVTKLKQDIKSLDKKLD 131 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hhCchHHhHHHHHHHHHHHHHHHHH
Confidence 3456677777777655444444444222 2344444444444444444444333
No 412
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=53.48 E-value=4.4 Score=43.53 Aligned_cols=56 Identities=21% Similarity=0.331 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Q 021065 251 RRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDE---SAVNNRILKADIETLRAKL 306 (318)
Q Consensus 251 ~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~---l~~EN~~Lrael~~Lr~kl 306 (318)
++|...+.+|..+|..|+..|..|..+...|..++.. +..+...++.++..|..++
T Consensus 321 KkKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~~~~~qle~~k~qi~eLe~~l 379 (713)
T PF05622_consen 321 KKKLEDLEDLKRQVKELEEDNAVLLETKAMLEEELKKARALKSQLEEYKKQIQELEQKL 379 (713)
T ss_dssp -----------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3566778888888888888888877777766655443 3334444444444444443
No 413
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=53.46 E-value=1.5e+02 Score=33.12 Aligned_cols=23 Identities=22% Similarity=0.229 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 021065 289 AVNNRILKADIETLRAKLYMFIE 311 (318)
Q Consensus 289 ~~EN~~Lrael~~Lr~kl~~~e~ 311 (318)
..+...|-+++..||.+|...|-
T Consensus 579 r~~~~~lvqqv~dLR~~L~~~Eq 601 (961)
T KOG4673|consen 579 RERESMLVQQVEDLRQTLSKKEQ 601 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555443
No 414
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=53.39 E-value=40 Score=26.72 Aligned_cols=32 Identities=19% Similarity=0.358 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 278 LTDVNQKYDESAVNNRILKADIETLRAKLYMF 309 (318)
Q Consensus 278 l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~ 309 (318)
|..++.+++.+..||-.||+++..+|..|..+
T Consensus 10 L~~lQnEWDa~mLE~f~LRk~l~~~rqELs~a 41 (70)
T PF08606_consen 10 LSTLQNEWDALMLENFTLRKQLDQTRQELSHA 41 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 415
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=53.13 E-value=45 Score=29.17 Aligned_cols=42 Identities=21% Similarity=0.243 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKAD 298 (318)
Q Consensus 257 l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrae 298 (318)
+...|..++.|+.+...=-.++..|++++..+...|..|..+
T Consensus 89 i~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n~~Lekr 130 (131)
T PF04859_consen 89 IKTYEIVVKKLEAELRAKDSEIDRLREKLDELNRANKSLEKR 130 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 344455555555555555566666666666677777776543
No 416
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=53.02 E-value=67 Score=31.05 Aligned_cols=18 Identities=22% Similarity=0.276 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 021065 290 VNNRILKADIETLRAKLY 307 (318)
Q Consensus 290 ~EN~~Lrael~~Lr~kl~ 307 (318)
..+..|..+++.|+.-+.
T Consensus 89 t~~~~ie~~l~~l~~~aG 106 (247)
T COG3879 89 TDDAALEDRLEKLRMLAG 106 (247)
T ss_pred hHHHHHHHHHHHHHHHhc
Confidence 444555556666665443
No 417
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=52.97 E-value=1.3e+02 Score=35.38 Aligned_cols=52 Identities=19% Similarity=0.133 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 021065 264 AGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFLG 315 (318)
Q Consensus 264 V~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~ 315 (318)
.++|+.|-..|..+-....+.++.|+.+-..-.+.++.+.+.|.-||..|.+
T Consensus 1691 Ae~L~~eA~~Ll~~a~~kl~~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~~~ 1742 (1758)
T KOG0994|consen 1691 AEQLRTEAEKLLGQANEKLDRLKDLELEYLRNEQALEDKAAELAGLEKRVES 1742 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHH
Confidence 4455555555555444444444444433333333444444444444444443
No 418
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=52.89 E-value=48 Score=28.60 Aligned_cols=60 Identities=22% Similarity=0.163 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021065 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFL 314 (318)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~ 314 (318)
.|-.+...++..++..+..|..++=.+-.+..-+...+..|..+-+.|+.+|..++..+.
T Consensus 65 ~~~~~~~~rl~~~r~r~~~L~hR~l~v~~~~eilr~~g~~l~~eEe~L~~~le~l~~~l~ 124 (141)
T PF13874_consen 65 KHDLETSARLEEARRRHQELSHRLLRVLRKQEILRNRGYALSPEEEELRKRLEALEAQLN 124 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHc
Confidence 344566677777777777777777666666666655555566666666666666555443
No 419
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=52.53 E-value=2.3e+02 Score=33.27 Aligned_cols=45 Identities=9% Similarity=0.087 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 244 ESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDES 288 (318)
Q Consensus 244 ESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l 288 (318)
..|.+....-++++++++..+...+.+...+..++..+..++..+
T Consensus 871 ~~A~~~~~~a~~~le~ae~~l~~~~~e~~~~~~e~~~a~~~l~~l 915 (1353)
T TIGR02680 871 RHAATRAAEQRARAARAESDAREAAEDAAEARAEAEEASLRLRTL 915 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555666666666666665555555555555544433
No 420
>PRK01156 chromosome segregation protein; Provisional
Probab=52.52 E-value=2.6e+02 Score=30.79 Aligned_cols=12 Identities=25% Similarity=0.434 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 021065 296 KADIETLRAKLY 307 (318)
Q Consensus 296 rael~~Lr~kl~ 307 (318)
..++..|+.++.
T Consensus 255 e~~i~ele~~l~ 266 (895)
T PRK01156 255 ESEIKTAESDLS 266 (895)
T ss_pred HHHHHHHHHHHH
Confidence 333333444333
No 421
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=52.12 E-value=1.5e+02 Score=25.80 Aligned_cols=59 Identities=19% Similarity=0.303 Sum_probs=39.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHH
Q 021065 235 RARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQ---------KYDESAVNNRIL 295 (318)
Q Consensus 235 R~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~q---------k~~~l~~EN~~L 295 (318)
..--+|-|.|.||--+.+..+ +.++.++..+..-...+...+..+.. +|..+..+-..+
T Consensus 34 ae~q~L~~kE~~r~~~~k~~a--e~a~~~L~~~~~~~~~i~e~~~kl~~~~~~r~yk~eYk~llk~y~~~ 101 (126)
T PF09403_consen 34 AEYQQLEQKEEARYNEEKQEA--EAAEAELAELKELYAEIEEKIEKLKQDSKVRWYKDEYKELLKKYKDL 101 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhHHHHHHHHHHhcchhHHHHHHHHHHHHHHHH
Confidence 344567788888887777666 67888888777777776666665543 466665554443
No 422
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=51.84 E-value=1.9e+02 Score=29.55 Aligned_cols=62 Identities=15% Similarity=0.195 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhhc
Q 021065 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVN---NRILKADIETLRAKLYMFIEIFLGE 316 (318)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~E---N~~Lrael~~Lr~kl~~~e~~v~~~ 316 (318)
..+-+|..+..+|..+...|+.+...+.+++..+... -..|++++..|..+++.+|+.++.+
T Consensus 28 d~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~ 92 (425)
T PRK05431 28 DELLELDEERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDEL 92 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666666666666666666666666553322 2357888888888888888776543
No 423
>PF06216 RTBV_P46: Rice tungro bacilliform virus P46 protein; InterPro: IPR009347 This family consists of several Rice tungro bacilliform virus P46 proteins. The function of this family is unknown.
Probab=51.82 E-value=63 Score=31.80 Aligned_cols=47 Identities=17% Similarity=0.234 Sum_probs=34.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 240 LSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESA 289 (318)
Q Consensus 240 lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~ 289 (318)
+=|.|+-+.+ -+-....|..||..|+..|..++.++...+.++..|.
T Consensus 66 ~y~~e~e~~s---y~~e~~~l~~qvs~l~~~~~~~r~~~~~~~~~~eglr 112 (389)
T PF06216_consen 66 IYNKEFERQS---YSNEWISLNDQVSHLQHQNSEQRQQIREMREIIEGLR 112 (389)
T ss_pred HHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3456665544 3456778889999999999999999988877777663
No 424
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=51.57 E-value=30 Score=33.74 Aligned_cols=24 Identities=33% Similarity=0.446 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 257 LNELETQAGQLRAEHSSLLKGLTD 280 (318)
Q Consensus 257 l~eLE~qV~~L~~EN~~L~~~l~~ 280 (318)
+..|+.++..|+.||..|+.++..
T Consensus 34 ~~~l~~~~~~lr~e~~~l~~~~~~ 57 (308)
T PF11382_consen 34 IDSLEDQFDSLREENDELRAELDA 57 (308)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHH
Confidence 344444555555444444444443
No 425
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=51.50 E-value=1.1e+02 Score=29.07 Aligned_cols=10 Identities=20% Similarity=0.405 Sum_probs=4.8
Q ss_pred cccCCchHHH
Q 021065 225 IEGLDSVDDK 234 (318)
Q Consensus 225 ~~~~d~~e~K 234 (318)
+-.+|..+.+
T Consensus 70 L~~ld~~~~~ 79 (334)
T TIGR00998 70 LVRLDPTNAE 79 (334)
T ss_pred EEEECchHHH
Confidence 3445555544
No 426
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=51.15 E-value=1.7e+02 Score=26.27 Aligned_cols=78 Identities=13% Similarity=0.119 Sum_probs=36.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021065 236 ARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIF 313 (318)
Q Consensus 236 ~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v 313 (318)
.-|++.-=..+-.-|.++..+++.++..+...+.+...|......-..++..+..+-..++..+..++.++....+.|
T Consensus 116 y~~~~~svk~~l~~R~~~~~~~~~a~~~l~kkk~~~~kl~~~~~~~~~k~~~~~~ei~~~~~~~~~~~~~~~~is~~~ 193 (236)
T PF09325_consen 116 YLRYIESVKEALNRRDKKLIEYQNAEKELQKKKAQLEKLKASGKNRQDKVEQAENEIEEAERRVEQAKDEFEEISENI 193 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444333444445555555555555555555555444443222233444444444444444444444444444333
No 427
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=51.10 E-value=82 Score=32.52 Aligned_cols=77 Identities=18% Similarity=0.205 Sum_probs=44.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHH---HHHHHHHHHHHHH
Q 021065 232 DDKRARRMLSNRESARRSRRRKQAHLNELETQAGQL----------------RAEHSSLLKGLT---DVNQKYDESAVNN 292 (318)
Q Consensus 232 e~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L----------------~~EN~~L~~~l~---~L~qk~~~l~~EN 292 (318)
++|..||+...-+-=||.|..=...|.+|-.-|-.. ..-+.+|++..+ ++.++...|+..|
T Consensus 227 ~~rdr~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q~~~E~~~rqk~le~~n 306 (411)
T KOG1318|consen 227 LERDRRKRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQRARELENRQKKLESTN 306 (411)
T ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHhHH
Confidence 455556666667778888888888888887654433 222333333332 3333344455666
Q ss_pred HHHHHHHHHHHHHHHH
Q 021065 293 RILKADIETLRAKLYM 308 (318)
Q Consensus 293 ~~Lrael~~Lr~kl~~ 308 (318)
++|..++++|...+..
T Consensus 307 ~~L~~rieeLk~~~~~ 322 (411)
T KOG1318|consen 307 QELALRIEELKSEAGR 322 (411)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666666666555543
No 428
>KOG2189 consensus Vacuolar H+-ATPase V0 sector, subunit a [Energy production and conversion]
Probab=50.97 E-value=1.3e+02 Score=33.53 Aligned_cols=38 Identities=24% Similarity=0.304 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 274 LLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIE 311 (318)
Q Consensus 274 L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~ 311 (318)
|..+++.+..++.++...+..||+...+|..-...+|+
T Consensus 97 le~~l~klE~el~eln~n~~~L~~n~~eL~E~~~vl~~ 134 (829)
T KOG2189|consen 97 LEEQLEKLESELRELNANKEALKANYNELLELKYVLEK 134 (829)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Confidence 44555555555555555555555555555555555444
No 429
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=50.88 E-value=3.1e+02 Score=29.92 Aligned_cols=53 Identities=23% Similarity=0.282 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFI 310 (318)
Q Consensus 258 ~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e 310 (318)
.+|+.+|+.|+.++..|..+|..+..++...+.+-.....++..++.|--+++
T Consensus 82 ~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~k~~LL~ 134 (632)
T PF14817_consen 82 RELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRHKQLLLE 134 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777777777776666665555555556666665555444
No 430
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=50.68 E-value=2.8e+02 Score=29.65 Aligned_cols=8 Identities=25% Similarity=0.696 Sum_probs=4.5
Q ss_pred HHHHHhhh
Q 021065 39 LEKFLQEV 46 (318)
Q Consensus 39 FqkfLeE~ 46 (318)
|++||...
T Consensus 67 y~~~l~~~ 74 (650)
T TIGR03185 67 YEQYLRGL 74 (650)
T ss_pred HHHHHHHH
Confidence 45666554
No 431
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=50.66 E-value=82 Score=25.40 Aligned_cols=22 Identities=23% Similarity=0.457 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 021065 257 LNELETQAGQLRAEHSSLLKGL 278 (318)
Q Consensus 257 l~eLE~qV~~L~~EN~~L~~~l 278 (318)
+..|..++..|..+|..|..++
T Consensus 77 i~~l~~ke~~l~~en~~L~~~~ 98 (100)
T PF01486_consen 77 IEELKKKERELEEENNQLRQKI 98 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444444443
No 432
>TIGR01461 greB transcription elongation factor GreB. The GreA and GreB transcription elongation factors enable to continuation of RNA transcription past template-encoded arresting sites. Among the Proteobacteria, distinct clades of GreA and GreB are found. GreB differs functionally in that it releases larger oligonucleotides. This model describes proteobacterial GreB.
Probab=50.50 E-value=41 Score=29.75 Aligned_cols=52 Identities=15% Similarity=0.171 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 257 LNELETQAGQLR-AEHSSLLKGLTDVN--------QKYDESAVNNRILKADIETLRAKLYM 308 (318)
Q Consensus 257 l~eLE~qV~~L~-~EN~~L~~~l~~L~--------qk~~~l~~EN~~Lrael~~Lr~kl~~ 308 (318)
++.|+.+++.|+ .+...+..++...+ ..|+....+-..|..++..|+.+|..
T Consensus 10 ~~~L~~El~~L~~~~r~~~~~~i~~Ar~~GDlsENaeY~aak~~~~~le~rI~~L~~~L~~ 70 (156)
T TIGR01461 10 YEKLKQELNYLWREERPEVTQKVTWAASLGDRSENADYQYGKKRLREIDRRVRFLTKRLEN 70 (156)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHcCCcchhhhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344555555554 24444444444432 23444455555555555555555543
No 433
>PHA03011 hypothetical protein; Provisional
Probab=50.45 E-value=1.2e+02 Score=25.99 Aligned_cols=49 Identities=22% Similarity=0.312 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (318)
Q Consensus 256 ~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~ 304 (318)
.+++|-.|-+.|..|-+-+..+..++.+-.+.-..|=--||+++..|..
T Consensus 65 ~ldeL~~qYN~L~dEYn~i~Ne~k~~~~iIQdn~d~I~~LraeIDkLK~ 113 (120)
T PHA03011 65 ILDELIAQYNELLDEYNLIENEIKDLEIIIQDNDDEIHFLRAEIDKLKE 113 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555444444333333334444444433
No 434
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=50.40 E-value=97 Score=31.47 Aligned_cols=44 Identities=18% Similarity=0.238 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIET 301 (318)
Q Consensus 258 ~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~ 301 (318)
+.|...-+.|..-.++|....+.|.++.+.+...-.+|+..+++
T Consensus 235 ~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~e 278 (365)
T KOG2391|consen 235 ESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVRE 278 (365)
T ss_pred HHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 33333344444444555555555555555565555666655555
No 435
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=50.25 E-value=1e+02 Score=23.43 Aligned_cols=21 Identities=14% Similarity=0.252 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 021065 293 RILKADIETLRAKLYMFIEIF 313 (318)
Q Consensus 293 ~~Lrael~~Lr~kl~~~e~~v 313 (318)
..++.++...+..+..++.-+
T Consensus 57 ~~~~~kl~~yr~~l~~lk~~l 77 (79)
T PF05008_consen 57 NQYKSKLRSYRSELKKLKKEL 77 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 344555555555555555444
No 436
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=50.17 E-value=64 Score=32.16 Aligned_cols=20 Identities=25% Similarity=0.124 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 021065 261 ETQAGQLRAEHSSLLKGLTD 280 (318)
Q Consensus 261 E~qV~~L~~EN~~L~~~l~~ 280 (318)
+.++++|+..+..|..++..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~ 33 (389)
T PRK03992 14 EEQIRQLELKLRDLEAENEK 33 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444444333333333
No 437
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=50.12 E-value=1.5e+02 Score=30.06 Aligned_cols=10 Identities=30% Similarity=0.567 Sum_probs=6.0
Q ss_pred CCCcceeecc
Q 021065 81 GDDDVVEIKK 90 (318)
Q Consensus 81 ~~~~vVev~~ 90 (318)
+..++++|.-
T Consensus 119 ~~s~vi~Is~ 128 (498)
T TIGR03007 119 GRDNLFTISY 128 (498)
T ss_pred CCCCeEEEEe
Confidence 3446777765
No 438
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=50.00 E-value=1.3e+02 Score=28.22 Aligned_cols=64 Identities=16% Similarity=0.122 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 021065 254 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFLGEN 317 (318)
Q Consensus 254 k~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~~~ 317 (318)
+..+..++.++..|..+-..|..+......+...+...=..+..+...|...|..+..-|.-+.
T Consensus 44 ~~~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~ 107 (264)
T PF06008_consen 44 KQQLDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELI 107 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 439
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=49.87 E-value=1.1e+02 Score=37.01 Aligned_cols=62 Identities=13% Similarity=0.223 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 248 RSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMF 309 (318)
Q Consensus 248 RSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~ 309 (318)
..+.+.-..+.+|..+++.|+.+...|...+..+..++....+++..|+.++.....+...+
T Consensus 1236 ee~~~~~~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L 1297 (1822)
T KOG4674|consen 1236 EENEANLEKIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDL 1297 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566666666666666666666666665555555555555555444444444433
No 440
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=49.83 E-value=1.4e+02 Score=25.87 Aligned_cols=16 Identities=38% Similarity=0.424 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 021065 260 LETQAGQLRAEHSSLL 275 (318)
Q Consensus 260 LE~qV~~L~~EN~~L~ 275 (318)
++.+++.|+.+-+.|.
T Consensus 25 v~~~l~~LEae~q~L~ 40 (126)
T PF09403_consen 25 VESELNQLEAEYQQLE 40 (126)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 441
>PRK11546 zraP zinc resistance protein; Provisional
Probab=49.75 E-value=1.8e+02 Score=25.85 Aligned_cols=18 Identities=28% Similarity=0.209 Sum_probs=8.4
Q ss_pred HHHHhHHHHHHHHHHHHH
Q 021065 238 RMLSNRESARRSRRRKQA 255 (318)
Q Consensus 238 R~lsNRESArRSR~RKk~ 255 (318)
..|.+.--++-...|.+-
T Consensus 53 q~I~~~f~~~t~~LRqqL 70 (143)
T PRK11546 53 QKIHNDFYAQTSALRQQL 70 (143)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444444443
No 442
>PRK10920 putative uroporphyrinogen III C-methyltransferase; Provisional
Probab=49.51 E-value=1.3e+02 Score=30.65 Aligned_cols=26 Identities=23% Similarity=0.281 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 263 QAGQLRAEHSSLLKGLTDVNQKYDES 288 (318)
Q Consensus 263 qV~~L~~EN~~L~~~l~~L~qk~~~l 288 (318)
++..++.+...|..++..|++++..+
T Consensus 100 ~l~~~e~~~~~l~~q~~~Lq~~~~~l 125 (390)
T PRK10920 100 ALDQANRQQAALAKQLDELQQKVATI 125 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444433
No 443
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=49.46 E-value=2.5e+02 Score=27.43 Aligned_cols=28 Identities=11% Similarity=0.109 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021065 287 ESAVNNRILKADIETLRAKLYMFIEIFL 314 (318)
Q Consensus 287 ~l~~EN~~Lrael~~Lr~kl~~~e~~v~ 314 (318)
.+..|-.+|.+++..|..+|..+.-..-
T Consensus 218 ~~~ae~seLq~r~~~l~~~L~~L~~e~~ 245 (289)
T COG4985 218 HYVAEKSELQKRLAQLQTELDALRAELE 245 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 4556666677777777776666654443
No 444
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=49.44 E-value=68 Score=35.73 Aligned_cols=52 Identities=17% Similarity=0.106 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021065 262 TQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIF 313 (318)
Q Consensus 262 ~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v 313 (318)
-++-.|+.-|-.|..+|.+.......|...|.+|..-++.++..-+.+.+++
T Consensus 427 ~El~sLqSlN~~Lq~ql~es~k~~e~lq~kneellk~~e~q~~Enk~~~~~~ 478 (861)
T PF15254_consen 427 LELFSLQSLNMSLQNQLQESLKSQELLQSKNEELLKVIENQKEENKRLRKMF 478 (861)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666666666666666666666666666555555554
No 445
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=49.36 E-value=1.9e+02 Score=33.99 Aligned_cols=18 Identities=28% Similarity=0.481 Sum_probs=12.1
Q ss_pred CCcchhHHHHHHhhhhcC
Q 021065 32 RSQSEWELEKFLQEVTVS 49 (318)
Q Consensus 32 rs~SEW~FqkfLeE~~~~ 49 (318)
+.=-=|..==||=|+...
T Consensus 260 ~ecDwWSlGV~~YEMlyG 277 (1317)
T KOG0612|consen 260 RECDWWSLGVFMYEMLYG 277 (1317)
T ss_pred CccchhhhHHHHHHHHcC
Confidence 333348888888887664
No 446
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=49.34 E-value=61 Score=24.79 Aligned_cols=24 Identities=29% Similarity=0.386 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 257 LNELETQAGQLRAEHSSLLKGLTD 280 (318)
Q Consensus 257 l~eLE~qV~~L~~EN~~L~~~l~~ 280 (318)
+++|+.++..|+.|...+...+..
T Consensus 23 v~EL~~RIa~L~aEI~R~~~~~~~ 46 (59)
T PF06698_consen 23 VEELEERIALLEAEIARLEAAIAK 46 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777788877777777766654
No 447
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=49.26 E-value=2.4e+02 Score=26.83 Aligned_cols=31 Identities=26% Similarity=0.396 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 254 QAHLNELETQAGQLRAEHSSLLKGLTDVNQK 284 (318)
Q Consensus 254 k~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk 284 (318)
...+..+..++..|+.++..+..++..+.+.
T Consensus 134 ~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~ 164 (301)
T PF14362_consen 134 DAQIARLDAEIAALQAEIDQLEKEIDRAQQE 164 (301)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556666666666665555554433
No 448
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=49.16 E-value=44 Score=27.87 Aligned_cols=20 Identities=35% Similarity=0.486 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 021065 286 DESAVNNRILKADIETLRAK 305 (318)
Q Consensus 286 ~~l~~EN~~Lrael~~Lr~k 305 (318)
..|..||..||.-+.-.+.|
T Consensus 88 ~~L~~E~diLKKa~~~~~~~ 107 (121)
T PRK09413 88 GKKTMENELLKEAVEYGRAK 107 (121)
T ss_pred HHHHHHHHHHHHHHHHhchh
Confidence 33455555555555444433
No 449
>PRK10722 hypothetical protein; Provisional
Probab=49.00 E-value=1.3e+02 Score=29.25 Aligned_cols=57 Identities=14% Similarity=0.199 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 232 DDKRARRMLSNRES------ARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAV 290 (318)
Q Consensus 232 e~KR~RR~lsNRES------ArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~ 290 (318)
..+-.-++.+.++- .-|.|-+|.+ ++-+.+++.|+.++..|..++..+++|+..|..
T Consensus 142 ~lrPL~qlwr~~Q~l~l~LaeEr~Ry~rLQ--q~sD~qlD~lrqq~~~Lq~~L~~t~rKLEnLTd 204 (247)
T PRK10722 142 QVRPLYQLWRDGQALQLALAEERQRYQKLQ--QSSDSELDALRQQQQRLQYQLELTTRKLENLTD 204 (247)
T ss_pred hhhHHHHHHHHhhHHHHhHHHHHHHHHHHh--hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555544 4555554443 333456666666666666666655555555443
No 450
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=48.87 E-value=2.5e+02 Score=32.58 Aligned_cols=49 Identities=18% Similarity=0.093 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021065 266 QLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFL 314 (318)
Q Consensus 266 ~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~ 314 (318)
.+-..|..|..++....++.+.+..+|...+.++..++.....+++.+.
T Consensus 262 ~~~~~N~~Ls~~L~~~t~~~n~l~~~~~~~~~~l~~~~q~~~~i~eQi~ 310 (1109)
T PRK10929 262 AQFKINRELSQALNQQAQRMDLIASQQRQAASQTLQVRQALNTLREQSQ 310 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445689999999999999999999999999999999888888887764
No 451
>PF03234 CDC37_N: Cdc37 N terminal kinase binding; InterPro: IPR013855 In Saccharomyces cerevisiae (Baker's yeast), cell division control protein Cdc37 is required for the productive formation of Cdc28-cyclin complexes. Cdc37 may be a kinase targeting subunit of Hsp90 [].
Probab=48.84 E-value=1.4e+02 Score=27.36 Aligned_cols=29 Identities=14% Similarity=0.138 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 254 QAHLNELETQAGQLRAEHSSLLKGLTDVN 282 (318)
Q Consensus 254 k~~l~eLE~qV~~L~~EN~~L~~~l~~L~ 282 (318)
++.++.|+.+.......+..+...+..+.
T Consensus 45 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~~ 73 (177)
T PF03234_consen 45 KQEIEELKYERKINEKLLKRIQKLLSALD 73 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34556666665555555554444444433
No 452
>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2.1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].
Probab=48.63 E-value=1.2e+02 Score=30.18 Aligned_cols=29 Identities=24% Similarity=0.300 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 260 LETQAGQLRAEHSSLLKGLTDVNQKYDES 288 (318)
Q Consensus 260 LE~qV~~L~~EN~~L~~~l~~L~qk~~~l 288 (318)
++..+..|+.+...+..++..+++++..+
T Consensus 91 ~~~~~~~l~~~l~~~~~~l~~l~~~~~~l 119 (372)
T PF04375_consen 91 QQEQLQQLQQELAQLQQQLAELQQQLAAL 119 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444555555555444443
No 453
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=48.32 E-value=94 Score=30.01 Aligned_cols=39 Identities=18% Similarity=0.043 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Q 021065 271 HSSLLKGLTDVNQKYDESA----VNNRILKADIETLRAKLYMF 309 (318)
Q Consensus 271 N~~L~~~l~~L~qk~~~l~----~EN~~Lrael~~Lr~kl~~~ 309 (318)
...|.+++..|++++..+. ..+..|+++.+.||+-|...
T Consensus 68 ~~~l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~LL~~~ 110 (283)
T TIGR00219 68 VNNLEYENYKLRQELLKKNQQLEILTQNLKQENVRLRELLNSP 110 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 3456666666666654442 22223555666665555443
No 454
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=48.32 E-value=85 Score=27.07 Aligned_cols=51 Identities=16% Similarity=0.186 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (318)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~k 305 (318)
.+|.++..++..|+..+.....++..+++++..|...=-.|-..++.|+.+
T Consensus 51 ~~l~~i~~~l~~L~~~~~~~~~rl~~~r~r~~~L~hR~l~v~~~~eilr~~ 101 (141)
T PF13874_consen 51 ERLKEINDKLEELQKHDLETSARLEEARRRHQELSHRLLRVLRKQEILRNR 101 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 345566666666655555566666665555555544333333444444433
No 455
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.28 E-value=1.4e+02 Score=23.86 Aligned_cols=48 Identities=21% Similarity=0.241 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETL 302 (318)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~L 302 (318)
++|.+||.++..-+.-...|...+.+...-+..+...=+.|-.++..+
T Consensus 8 ~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~~kl~~~ 55 (72)
T COG2900 8 ARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLTEKLKDL 55 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345566666655555555555555554444444444444444444443
No 456
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=48.12 E-value=1e+02 Score=34.81 Aligned_cols=62 Identities=13% Similarity=0.185 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 021065 254 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFLG 315 (318)
Q Consensus 254 k~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~ 315 (318)
+.++..|+.+...|+.|.+.|...+..++.+..+.++|-..+++++..|...|..-.+-|.+
T Consensus 105 ~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~eIf~ 166 (1265)
T KOG0976|consen 105 ESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHDIFM 166 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHH
Confidence 44566666666666666666666666666666666666555666665555555544444443
No 457
>PRK11281 hypothetical protein; Provisional
Probab=48.05 E-value=2.2e+02 Score=32.99 Aligned_cols=83 Identities=18% Similarity=0.182 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 233 DKRARRMLSNRESARRSRRRK-----------QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIET 301 (318)
Q Consensus 233 ~KR~RR~lsNRESArRSR~RK-----------k~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~ 301 (318)
++.+.|+-.||.--+.-|.+- ..+...|+.+...|+.+|..++.++....+...-+..+-..++.++..
T Consensus 159 ERAQ~~lsea~~RlqeI~~~L~~~~~~~~~l~~~~~~~l~ae~~~l~~~~~~~~~~l~~~~~l~~l~~~q~d~~~~~~~~ 238 (1113)
T PRK11281 159 ERAQAALYANSQRLQQIRNLLKGGKVGGKALRPSQRVLLQAEQALLNAQNDLQRKSLEGNTQLQDLLQKQRDYLTARIQR 238 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHhhhh
Q 021065 302 LRAKLYMFIEIFLG 315 (318)
Q Consensus 302 Lr~kl~~~e~~v~~ 315 (318)
+.+++..+.+.+..
T Consensus 239 ~~~~~~~lq~~in~ 252 (1113)
T PRK11281 239 LEHQLQLLQEAINS 252 (1113)
T ss_pred HHHHHHHHHHHHHH
No 458
>PHA02675 ORF104 fusion protein; Provisional
Probab=48.04 E-value=1.3e+02 Score=24.75 Aligned_cols=20 Identities=15% Similarity=0.197 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 021065 287 ESAVNNRILKADIETLRAKL 306 (318)
Q Consensus 287 ~l~~EN~~Lrael~~Lr~kl 306 (318)
.|+..-..||.-+-.|..||
T Consensus 62 RLE~H~ETLRk~Ml~L~KKI 81 (90)
T PHA02675 62 RLERHLETLREALLKLNTKI 81 (90)
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 34444444555555555554
No 459
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=47.77 E-value=2.1e+02 Score=26.75 Aligned_cols=22 Identities=9% Similarity=0.237 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 021065 293 RILKADIETLRAKLYMFIEIFL 314 (318)
Q Consensus 293 ~~Lrael~~Lr~kl~~~e~~v~ 314 (318)
..++.+|..++.+|..||..++
T Consensus 163 ~~v~~Dl~~ie~QV~~Le~~L~ 184 (195)
T PF12761_consen 163 KSVREDLDTIEEQVDGLESHLS 184 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666666553
No 460
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=47.65 E-value=1.6e+02 Score=26.75 Aligned_cols=25 Identities=16% Similarity=0.224 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 021065 289 AVNNRILKADIETLRAKLYMFIEIF 313 (318)
Q Consensus 289 ~~EN~~Lrael~~Lr~kl~~~e~~v 313 (318)
..|=..+.+++..|.++|+.+|.+.
T Consensus 124 r~e~ee~~~~l~~le~~~~~~e~~~ 148 (175)
T PRK13182 124 RREMEEMLERLQKLEARLKKLEPIY 148 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3566678999999999999988754
No 461
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=47.57 E-value=1.4e+02 Score=27.67 Aligned_cols=79 Identities=14% Similarity=0.267 Sum_probs=48.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHH
Q 021065 236 ARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDES---------AVNNRILKADIETLRAKL 306 (318)
Q Consensus 236 ~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l---------~~EN~~Lrael~~Lr~kl 306 (318)
.-.....-..++.-..--...+..+......+.........++..+..++..+ ....-.|.+++..|..++
T Consensus 87 l~~~~~~L~~~q~~l~~~~~~l~~~~~~p~~aq~~l~~~~~~l~ei~~~L~~~~~~~~~~l~~a~~~~l~ae~~~l~~~~ 166 (240)
T PF12795_consen 87 LSQEQAQLQELQEQLQQENSQLIEIQTRPERAQQQLSEARQRLQEIRNQLQNLPPNGESPLSEAQRWLLQAELAALEAQI 166 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhccCCCCcchhhHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444555666666666667777777777777777666653 455666777777777777
Q ss_pred HHHHHhhh
Q 021065 307 YMFIEIFL 314 (318)
Q Consensus 307 ~~~e~~v~ 314 (318)
.|++-...
T Consensus 167 ~~le~el~ 174 (240)
T PF12795_consen 167 EMLEQELL 174 (240)
T ss_pred HHHHHHHH
Confidence 77765443
No 462
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=47.52 E-value=1.1e+02 Score=22.59 Aligned_cols=15 Identities=47% Similarity=0.594 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHH
Q 021065 253 KQAHLNELETQAGQL 267 (318)
Q Consensus 253 Kk~~l~eLE~qV~~L 267 (318)
++..++.+......|
T Consensus 53 ~~~~l~~l~~~~~~L 67 (105)
T PF00435_consen 53 RQERLESLNEQAQQL 67 (105)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444444
No 463
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=47.40 E-value=87 Score=27.71 Aligned_cols=49 Identities=16% Similarity=0.247 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 258 NELETQAGQLRAEHSSLL-----KGLTDVNQKYDESAVNNRILKADIETLRAKL 306 (318)
Q Consensus 258 ~eLE~qV~~L~~EN~~L~-----~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl 306 (318)
.+|..++.+|+.|+..+. .+-..++++++.++.|-..++++...-+.++
T Consensus 43 ~~l~~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~kl~~el~~~~~~~~~~~~~~ 96 (161)
T PF04420_consen 43 RQLRKEILQLKRELNAISAQDEFAKWAKLNRKLDKLEEELEKLNKSLSSEKSSF 96 (161)
T ss_dssp HHHHHHHHHHHHHHTTS-TTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555554432 2333444455555544444444444433333
No 464
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=47.31 E-value=1.3e+02 Score=30.42 Aligned_cols=53 Identities=15% Similarity=0.132 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021065 262 TQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFL 314 (318)
Q Consensus 262 ~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~ 314 (318)
.++..|+.|--.-+.+-...+..+..+..+|.+--.+++.|..+|.+||...+
T Consensus 257 Kk~kklEKE~l~wr~K~e~aNk~vL~la~ekt~~~k~~~~lq~kiq~LekLcR 309 (391)
T KOG1850|consen 257 KKIKKLEKETLIWRTKWENANKAVLQLAEEKTVRDKEYETLQKKIQRLEKLCR 309 (391)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444455555667788888888899999999999998765
No 465
>PF13118 DUF3972: Protein of unknown function (DUF3972)
Probab=47.25 E-value=85 Score=27.45 Aligned_cols=45 Identities=18% Similarity=0.327 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIE 300 (318)
Q Consensus 256 ~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~ 300 (318)
-|....+-+..|+.||.-|+..|-.+++-|..=...-..|+.++.
T Consensus 79 vl~aKdETI~~lk~EN~fLKeAl~s~QE~y~ed~kTI~~L~~qL~ 123 (126)
T PF13118_consen 79 VLDAKDETIEALKNENRFLKEALYSMQELYEEDRKTIELLREQLK 123 (126)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 355566778899999999999998888777665444444444443
No 466
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=47.09 E-value=1.4e+02 Score=25.24 Aligned_cols=50 Identities=24% Similarity=0.259 Sum_probs=25.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 239 MLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNR 293 (318)
Q Consensus 239 ~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~ 293 (318)
|=.||.+++..++-...|-..| ..+.|+..|..++..+..+......+..
T Consensus 55 msQNRq~~~dr~ra~~D~~inl-----~ae~ei~~l~~~l~~l~~~~~~~~~~~~ 104 (108)
T PF06210_consen 55 MSQNRQAARDRLRAELDYQINL-----KAEQEIERLHRKLDALREKLGELLERDQ 104 (108)
T ss_pred HHhhHhHHHHHHHHHHHHHHHH-----HhHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 4467777764333333332222 2234556666666666665555554443
No 467
>PF10359 Fmp27_WPPW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019449 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a domain within FMP27 that contains characteristic HQR and WPPW sequence motifs.
Probab=47.05 E-value=65 Score=33.28 Aligned_cols=13 Identities=8% Similarity=0.072 Sum_probs=5.9
Q ss_pred HHHHHHHhHHHHH
Q 021065 235 RARRMLSNRESAR 247 (318)
Q Consensus 235 R~RR~lsNRESAr 247 (318)
-+.++++.|...-
T Consensus 163 vQ~~L~~~Rl~~L 175 (475)
T PF10359_consen 163 VQIELIQERLDEL 175 (475)
T ss_pred HHHHHHHHHHHHH
Confidence 3444555444433
No 468
>PF15369 KIAA1328: Uncharacterised protein KIAA1328
Probab=46.92 E-value=3.1e+02 Score=27.64 Aligned_cols=77 Identities=23% Similarity=0.348 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHhHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 230 SVDDKRARRMLSNRESARRSRRRK------QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR 303 (318)
Q Consensus 230 ~~e~KR~RR~lsNRESArRSR~RK------k~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr 303 (318)
+.|.||+.-+|+ +-||-+-.|- +.+-+.+|.++..|+.+|.-+.++-+.|.++|.+-..=-....+=+.+-+
T Consensus 4 ~~dk~ri~~li~--~la~~~~~~e~~~~~~~~~~~~~e~~~~~l~~~~~~~~~~~~~~~~qyrecqell~lyq~ylseqq 81 (328)
T PF15369_consen 4 PEDKRRIANLIK--ELARVSEEKEVTEERLKAEQESFEKKIRQLEEQNELIIKEREDLQQQYRECQELLSLYQKYLSEQQ 81 (328)
T ss_pred hhHHHHHHHHHH--HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHH
Q 021065 304 AKLYM 308 (318)
Q Consensus 304 ~kl~~ 308 (318)
.||.+
T Consensus 82 ~kl~~ 86 (328)
T PF15369_consen 82 EKLTM 86 (328)
T ss_pred HHHhc
No 469
>PF03449 GreA_GreB_N: Transcription elongation factor, N-terminal; InterPro: IPR022691 Bacterial proteins greA and greB are necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. Arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked DNA/RNA/ polymerase ternary complexes. Cleavage of the nascent transcript by cleavage factors, such as greA or greB, allows the resumption of elongation from the new 3' terminus [, ]. Escherichia coli GreA and GreB are sequence homologues and have homologues in every known bacterial genome []. GreA induces cleavage two or three nucleotides behind the terminus and can only prevent the formation of arrested complexes while greB releases longer sequences up to eighteen nucleotides in length and can rescue preexisting arrested complexes. These functional differences correlate with a distinctive structural feature, the distribution of positively charged residues on one face of the N-terminal coiled coil. Remarkably, despite close functional similarity, the prokaryotic Gre factors have no sequence or structural similarity with eukaryotic TFIIS. ; GO: 0003677 DNA binding, 0032784 regulation of transcription elongation, DNA-dependent; PDB: 1GRJ_A 2EUL_C 3AOH_Y 3AOI_X 2F23_A 2ETN_C 2P4V_B.
Probab=46.91 E-value=88 Score=24.52 Aligned_cols=51 Identities=18% Similarity=0.399 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 257 LNELETQAGQLRA-EHSSLLKGLTDVNQ--------KYDESAVNNRILKADIETLRAKLY 307 (318)
Q Consensus 257 l~eLE~qV~~L~~-EN~~L~~~l~~L~q--------k~~~l~~EN~~Lrael~~Lr~kl~ 307 (318)
+..|+.+++.|.. +-..+..++..... .|+.+..+...|..+|..|..+|.
T Consensus 11 ~~~L~~EL~~L~~~~rpe~~~~i~~Ar~~GDlsENaeY~aAke~q~~le~rI~~Le~~l~ 70 (74)
T PF03449_consen 11 YEKLQAELEHLKNVERPEIAEEIAEAREQGDLSENAEYHAAKERQAFLEARIRELEERLA 70 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCSSSTSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCcccchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555555544 33445555554432 344555544554444444444443
No 470
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=46.78 E-value=58 Score=32.71 Aligned_cols=29 Identities=24% Similarity=0.210 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 283 QKYDESAVNNRILKADIETLRAKLYMFIE 311 (318)
Q Consensus 283 qk~~~l~~EN~~Lrael~~Lr~kl~~~e~ 311 (318)
+.|..+..||..||+++..|++++...++
T Consensus 57 ~~y~~L~~EN~~Lk~Ena~L~~~l~~~e~ 85 (337)
T PRK14872 57 SHALVLETENFLLKERIALLEERLKSYEE 85 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666655443
No 471
>PF07767 Nop53: Nop53 (60S ribosomal biogenesis); InterPro: IPR011687 This entry contains sequences that bear similarity to the glioma tumour suppressor candidate region gene 2 protein (p60) []. This protein has been found to interact with herpes simplex type 1 regulatory proteins, but its exact role in the life cycle of the virus is not known [].
Probab=46.73 E-value=1e+02 Score=30.66 Aligned_cols=37 Identities=19% Similarity=0.318 Sum_probs=23.8
Q ss_pred chHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 230 SVDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQ 266 (318)
Q Consensus 230 ~~e~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~ 266 (318)
+...+|.-+..+||+-.++-+.++.++...+..++.+
T Consensus 272 ~~~~kkKTk~qRnK~~r~k~~~~~~~~~k~~k~~~~~ 308 (387)
T PF07767_consen 272 PKKNKKKTKAQRNKEKRRKEEERKEKERKKEKKKIKQ 308 (387)
T ss_pred ccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4446666678888887777777776655555544433
No 472
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=46.56 E-value=1.8e+02 Score=27.51 Aligned_cols=13 Identities=23% Similarity=0.340 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHH
Q 021065 257 LNELETQAGQLRA 269 (318)
Q Consensus 257 l~eLE~qV~~L~~ 269 (318)
+..++.++...+.
T Consensus 110 i~~~~~~~~~a~~ 122 (334)
T TIGR00998 110 VESLKIKLEQARE 122 (334)
T ss_pred HHHHHHHHHHHHH
Confidence 3333344443333
No 473
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=46.41 E-value=1.9e+02 Score=24.94 Aligned_cols=42 Identities=12% Similarity=0.105 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 259 ELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIE 300 (318)
Q Consensus 259 eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~ 300 (318)
+|..+|..|+.|+..+..-..+|..++.-|+..++..|+.+.
T Consensus 29 EmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkqER~k~~ 70 (134)
T PF08232_consen 29 EMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQERAKYK 70 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444566666666666666666666666666665555555443
No 474
>PRK10920 putative uroporphyrinogen III C-methyltransferase; Provisional
Probab=46.37 E-value=2.1e+02 Score=29.29 Aligned_cols=55 Identities=18% Similarity=0.209 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 254 QAHLNELETQAGQLRAE----HSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYM 308 (318)
Q Consensus 254 k~~l~eLE~qV~~L~~E----N~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~ 308 (318)
++.+..|..++..+..+ ...|...+..+..++..++.+...|..++..|..++..
T Consensus 66 ~~~~~~L~~ql~~~~~~~~~~~~~l~~~~~~~~~~l~~~e~~~~~l~~q~~~Lq~~~~~ 124 (390)
T PRK10920 66 TATNDALANQLTALQKAQESQKQELEGILKQQAKALDQANRQQAALAKQLDELQQKVAT 124 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566555555443 23344444444444555555555555555555555543
No 475
>KOG3096 consensus Spliceosome-associated coiled-coil protein [Function unknown]
Probab=46.36 E-value=2.1e+02 Score=27.30 Aligned_cols=34 Identities=15% Similarity=0.142 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 277 GLTDVNQKYDESAVNNRILKADIETLRAKLYMFI 310 (318)
Q Consensus 277 ~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e 310 (318)
+|..|.+++..|...|-+++..+..|...+...+
T Consensus 171 rL~~le~~wvqLv~knyeie~a~~~le~~i~~~r 204 (225)
T KOG3096|consen 171 RLRELEQKWVQLVSKNYEIEVACVQLETQIDKKR 204 (225)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 3444455555666666666665555555554333
No 476
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=46.32 E-value=1e+02 Score=32.87 Aligned_cols=55 Identities=22% Similarity=0.297 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Q 021065 254 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRIL----KADIETLRAKLYM 308 (318)
Q Consensus 254 k~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~L----rael~~Lr~kl~~ 308 (318)
++++.+++.-++.|..++..|..+|..+..+|..+..+|..+ +.+++.|..+|..
T Consensus 486 ee~i~~~~~~i~El~~~l~~~e~~L~~a~s~~~~~ke~~e~e~~a~~~E~eklE~el~~ 544 (622)
T COG5185 486 EEDIKNLKHDINELTQILEKLELELSEANSKFELSKEENERELVAQRIEIEKLEKELND 544 (622)
T ss_pred HHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 467788888888888888888888888888888776666554 6777777776654
No 477
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=46.26 E-value=1.5e+02 Score=26.64 Aligned_cols=19 Identities=5% Similarity=-0.013 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 021065 296 KADIETLRAKLYMFIEIFL 314 (318)
Q Consensus 296 rael~~Lr~kl~~~e~~v~ 314 (318)
+.-...|..++..+|..+.
T Consensus 78 ~~~r~~l~~~~~~~e~~~a 96 (158)
T PF09486_consen 78 RRYRDVLEERVRAAEAELA 96 (158)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444443
No 478
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=46.16 E-value=2.1e+02 Score=25.46 Aligned_cols=63 Identities=13% Similarity=0.168 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 021065 253 KQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDE-----SAVNNRILKADIETLRAKLYMFIEIFLG 315 (318)
Q Consensus 253 Kk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~-----l~~EN~~Lrael~~Lr~kl~~~e~~v~~ 315 (318)
.+.++..|..+...|+.+...|..++..-..+... +..+...+|.+...+..|+..++.-|..
T Consensus 71 ~k~~~~~lr~~~e~L~~eie~l~~~L~~ei~~l~a~~klD~n~eK~~~r~e~~~~~~ki~e~~~ki~~ 138 (177)
T PF07798_consen 71 RKSEFAELRSENEKLQREIEKLRQELREEINKLRAEVKLDLNLEKGRIREEQAKQELKIQELNNKIDT 138 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
No 479
>KOG0483 consensus Transcription factor HEX, contains HOX and HALZ domains [Transcription]
Probab=46.05 E-value=33 Score=31.94 Aligned_cols=53 Identities=17% Similarity=0.206 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 021065 263 QAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFLG 315 (318)
Q Consensus 263 qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~ 315 (318)
|....+-.+.+|......|+.+|..|..+|..|..++..|++.+..+...++.
T Consensus 99 QNRRARwK~kqlE~d~~~Lk~~~~~l~~~~~~Lq~e~~eL~~~~~~~~~~~~~ 151 (198)
T KOG0483|consen 99 QNRRARWKTKQLEKDYESLKRQLESLRSENDRLQSEVQELVAELSSLKREMQK 151 (198)
T ss_pred hhccccccchhhhhhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhcc
No 480
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=46.01 E-value=2.3e+02 Score=32.72 Aligned_cols=77 Identities=14% Similarity=0.232 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 233 DKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMF 309 (318)
Q Consensus 233 ~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~ 309 (318)
.+..+++.++=.+-...+...+..+++|+.+....-.+...|...+.+..-+...+..+|..|+.++.+|..+-+.+
T Consensus 396 r~ei~~l~~~i~~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~l 472 (1200)
T KOG0964|consen 396 RSEIEKLKRGINDTKEQENILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKEL 472 (1200)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
No 481
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=46.00 E-value=91 Score=33.47 Aligned_cols=64 Identities=14% Similarity=0.047 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 021065 254 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFLGEN 317 (318)
Q Consensus 254 k~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~~~ 317 (318)
..++++...+++.|+........+|..++..+..++.+|.-|..+....+.=+..++.+|.++.
T Consensus 36 ~~~ld~a~~e~d~le~~l~~y~~~L~~~~~di~~IE~qn~~Lqvq~~N~k~L~~eL~~Ll~~l~ 99 (701)
T PF09763_consen 36 MEYLDEALAECDELESWLSLYDVELNSVRDDIEYIESQNNGLQVQSANQKLLLNELENLLDTLS 99 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHhcC
No 482
>PRK10132 hypothetical protein; Provisional
Probab=45.94 E-value=95 Score=26.19 Aligned_cols=63 Identities=14% Similarity=0.231 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 021065 253 KQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYD-----ESAVNNRILKADIETLRAKLYMFIEIFLG 315 (318)
Q Consensus 253 Kk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~-----~l~~EN~~Lrael~~Lr~kl~~~e~~v~~ 315 (318)
++....+|+.+++.|..+...|...++.|-.... .+..=-..+...+...|.++..+++.+.+
T Consensus 3 ~~~~~~~~~~q~e~L~~Dl~~L~~~le~ll~~~~~~~~~~~~~lR~r~~~~L~~ar~~l~~~~~~~~~ 70 (108)
T PRK10132 3 NRPNRNDVDDGVQDIQNDVNQLADSLESVLKSWGSDAKGEAEAARRKAQALLKETRARMHGRTRVQQA 70 (108)
T ss_pred CCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
No 483
>PF15233 SYCE1: Synaptonemal complex central element protein 1
Probab=45.90 E-value=1.9e+02 Score=25.67 Aligned_cols=59 Identities=12% Similarity=0.125 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021065 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFL 314 (318)
Q Consensus 256 ~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~ 314 (318)
++++|-.+++.|+.--.....+|...+.-..+|..|=..|..+-..|..-+.+-+++++
T Consensus 7 ~iE~LInrInelQQaKKk~~EELgEa~~l~eaL~~ELDsL~~EkvhLeeilnkKqe~l~ 65 (134)
T PF15233_consen 7 QIEDLINRINELQQAKKKSSEELGEAQALWEALQRELDSLNGEKVHLEEILNKKQETLR 65 (134)
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
No 484
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=45.89 E-value=68 Score=32.00 Aligned_cols=43 Identities=21% Similarity=0.184 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 254 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILK 296 (318)
Q Consensus 254 k~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lr 296 (318)
..++.+|+.++++|+..+..|..++..+++++..+..++..|+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (389)
T PRK03992 7 EERNSELEEQIRQLELKLRDLEAENEKLERELERLKSELEKLK 49 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 485
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=45.80 E-value=1.5e+02 Score=27.64 Aligned_cols=61 Identities=20% Similarity=0.241 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 021065 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFLG 315 (318)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~ 315 (318)
..+..||.+|..|+..-..+...+..-.++.-.+..+-..|++++..|..|+..+=..+-+
T Consensus 79 ~lvinlE~kvD~lee~fdd~~d~l~~q~eq~~~~~~~v~~~~q~~~~l~~K~D~~L~llE~ 139 (189)
T TIGR02132 79 SLVINLEEKVDLIEEFFDDKFDELEAQQEQAPALKKDVTKLKQDIKSLDKKLDKILELLEG 139 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHhHHHHHHHHHHHHHHHHHHHHHHHhc
No 486
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=45.77 E-value=2.9e+02 Score=32.52 Aligned_cols=85 Identities=19% Similarity=0.193 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021065 233 DKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEI 312 (318)
Q Consensus 233 ~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~ 312 (318)
.++.--.+++-+.++-+=.+...++.+....+..++.+...+..++..+...+..+..+-+.|+.++..||.+|..+...
T Consensus 513 ~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks~ 592 (1293)
T KOG0996|consen 513 LSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKSS 592 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhcc
Q 021065 313 FLGEN 317 (318)
Q Consensus 313 v~~~~ 317 (318)
....+
T Consensus 593 ~~~~~ 597 (1293)
T KOG0996|consen 593 LSSSR 597 (1293)
T ss_pred HHhhh
No 487
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=45.72 E-value=1.4e+02 Score=29.83 Aligned_cols=59 Identities=20% Similarity=0.172 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 021065 254 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFLGE 316 (318)
Q Consensus 254 k~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~~ 316 (318)
+.+|..|+-++.+ -..|..++..|.++...+..+|...+..+..|..+|+.+.+..+-+
T Consensus 90 ~lml~RL~~EL~~----Rk~L~~~~~el~~~k~~l~~~~~~k~~~L~~l~~~L~~l~~a~~pl 148 (355)
T PF09766_consen 90 QLMLARLEFELEQ----RKRLEEQLKELEQRKKKLQQENKKKKKFLDSLPPQLKSLKKAAKPL 148 (355)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
No 488
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=45.67 E-value=1.3e+02 Score=22.82 Aligned_cols=46 Identities=11% Similarity=0.197 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 261 ETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKL 306 (318)
Q Consensus 261 E~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl 306 (318)
..++.+|..+.+.|..++..|...+..+..+-...+.+.+.-..||
T Consensus 2 ~akid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~Rl 47 (56)
T PF04728_consen 2 NAKIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRL 47 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 489
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=45.66 E-value=95 Score=32.21 Aligned_cols=90 Identities=16% Similarity=0.129 Sum_probs=0.0
Q ss_pred CCchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
Q 021065 228 LDSVDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRI----LKADIETLR 303 (318)
Q Consensus 228 ~d~~e~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~----Lrael~~Lr 303 (318)
.|.+..|...-.++++...|.--..--..+-+|+.+...|..+...|+.+-..+.+++......+.. |++++..|.
T Consensus 2 ld~k~ir~n~d~v~~~l~~r~~~~~~~~~~~~ld~~~r~~~~~~e~l~~~rn~~sk~ig~~~~~~~~~~~~l~~e~~~l~ 81 (429)
T COG0172 2 LDLKLIRENPDAVREKLKKRGGDALDVDKLLELDEERRKLLRELEELQAERNELSKEIGRALKRGEDDAEELIAEVKELK 81 (429)
T ss_pred chHHHhhhCHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHH
Q ss_pred HHHHHHHHhhhhcc
Q 021065 304 AKLYMFIEIFLGEN 317 (318)
Q Consensus 304 ~kl~~~e~~v~~~~ 317 (318)
.+++.++..+..+.
T Consensus 82 ~~l~~~e~~~~~~~ 95 (429)
T COG0172 82 EKLKELEAALDELE 95 (429)
T ss_pred HHHHhccHHHHHHH
No 490
>COG3599 DivIVA Cell division initiation protein [Cell division and chromosome partitioning]
Probab=45.65 E-value=1.5e+02 Score=27.92 Aligned_cols=63 Identities=19% Similarity=0.200 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH---HHHHHHHHHHHhhhhcc
Q 021065 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVN---NRILKADIE---TLRAKLYMFIEIFLGEN 317 (318)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~E---N~~Lrael~---~Lr~kl~~~e~~v~~~~ 317 (318)
+.|+.+...+..+..+|..|..++..|.+++.....- +..+.++-. .++..-..+.+||++..
T Consensus 30 eFLD~V~~dye~~l~e~~~l~~~i~~L~~~l~~~~~~~~s~~i~~a~~~a~~~~~~a~~ea~~il~~a~ 98 (212)
T COG3599 30 EFLDDVIDDYEQLLDENEDLEDEIDELKEELKEAADAEDSQAIQQAETEAEELKQAAEAEADDILKRAS 98 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 491
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=45.58 E-value=2.5e+02 Score=25.92 Aligned_cols=78 Identities=19% Similarity=0.168 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021065 233 DKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEI 312 (318)
Q Consensus 233 ~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~ 312 (318)
.+|..++..+-+.|.+.+..=...+.+.+.++..-+.+-+.+..+. +-.........+..=...+..++..++..
T Consensus 83 e~R~~~I~~~L~~Ae~~k~eAe~~~~~ye~~L~~Ar~eA~~Ii~~A-----r~ea~~~~e~~~~~a~~ea~~~l~~Ae~~ 157 (204)
T PRK09174 83 ETRRDRIAQDLDQAARLKQEADAAVAAYEQELAQARAKAHSIAQAA-----REAAKAKAEAERAAIEASLEKKLKEAEAR 157 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhh
Q 021065 313 FLG 315 (318)
Q Consensus 313 v~~ 315 (318)
|.+
T Consensus 158 I~~ 160 (204)
T PRK09174 158 IAA 160 (204)
T ss_pred HHH
No 492
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=45.51 E-value=2.6e+02 Score=27.70 Aligned_cols=76 Identities=21% Similarity=0.180 Sum_probs=0.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021065 239 MLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFL 314 (318)
Q Consensus 239 ~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~ 314 (318)
.+.|++----+|..--+....|+..+.++.....+|++.+..|.|....|+.-.+.----++.+..||..+=+.++
T Consensus 75 ~e~~Kek~e~q~~q~y~q~s~Leddlsqt~aikeql~kyiReLEQaNDdLErakRati~sleDfeqrLnqAIErnA 150 (333)
T KOG1853|consen 75 QERNKEKQEDQRVQFYQQESQLEDDLSQTHAIKEQLRKYIRELEQANDDLERAKRATIYSLEDFEQRLNQAIERNA 150 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHhhhhhhhhHHHHHHHHHHHHHHHH
No 493
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=45.37 E-value=2.3e+02 Score=31.78 Aligned_cols=80 Identities=16% Similarity=0.277 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 231 VDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFI 310 (318)
Q Consensus 231 ~e~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e 310 (318)
.|-||.+.++..++ ..=++--...+-+...++.|..+....+..++-++...+.||.+|.-.+..--+.|..|+
T Consensus 469 ~Enk~~~~~~~ekd------~~l~~~kq~~d~e~~rik~ev~eal~~~k~~q~kLe~sekEN~iL~itlrQrDaEi~RL~ 542 (861)
T PF15254_consen 469 EENKRLRKMFQEKD------QELLENKQQFDIETTRIKIEVEEALVNVKSLQFKLEASEKENQILGITLRQRDAEIERLR 542 (861)
T ss_pred HHHHHHHHHHHHHH------HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhHhhhHHHHHHHHHHHHH
Q ss_pred Hhhhhc
Q 021065 311 EIFLGE 316 (318)
Q Consensus 311 ~~v~~~ 316 (318)
++.+.+
T Consensus 543 eLtR~L 548 (861)
T PF15254_consen 543 ELTRTL 548 (861)
T ss_pred HHHHHH
No 494
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]
Probab=45.33 E-value=1e+02 Score=32.18 Aligned_cols=77 Identities=21% Similarity=0.158 Sum_probs=0.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhh
Q 021065 238 RMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRIL---KADIETLRAKLYMFIEIFL 314 (318)
Q Consensus 238 R~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~L---rael~~Lr~kl~~~e~~v~ 314 (318)
|+ +||+-|.-|-+-+-..+-+++.+|..|+.+..+|..-|..=.-.......=.+.| +++++.|+++...+...+.
T Consensus 397 rk-kt~e~ag~s~Ktl~~~lv~~edeirrlkrdm~klkq~l~RN~gd~v~s~~lqe~L~ev~~~Lasl~aqea~ls~eq~ 475 (486)
T KOG2185|consen 397 RK-KTRENAGPSDKTLGAALVEYEDEIRRLKRDMLKLKQMLNRNKGDLVVSEALQERLKEVRKALASLLAQEAALSNEQV 475 (486)
T ss_pred hh-hhhhhcCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHh
Q ss_pred h
Q 021065 315 G 315 (318)
Q Consensus 315 ~ 315 (318)
.
T Consensus 476 s 476 (486)
T KOG2185|consen 476 S 476 (486)
T ss_pred h
No 495
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=45.12 E-value=2.7e+02 Score=26.15 Aligned_cols=85 Identities=15% Similarity=0.198 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021065 234 KRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIF 313 (318)
Q Consensus 234 KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v 313 (318)
+..+...+.....+.--..-...+..|+..+..|..+-.........+..........=..|...+..|...|..+-+.|
T Consensus 31 ~~L~~~~~~~~~~~~~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~ 110 (264)
T PF06008_consen 31 NQLRSYRSKLNPQKQQLDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQV 110 (264)
T ss_pred HHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhccC
Q 021065 314 LGENG 318 (318)
Q Consensus 314 ~~~~~ 318 (318)
.++.+
T Consensus 111 ~~l~~ 115 (264)
T PF06008_consen 111 ESLNE 115 (264)
T ss_pred HHhCc
No 496
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].
Probab=44.89 E-value=96 Score=26.93 Aligned_cols=54 Identities=19% Similarity=0.161 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021065 261 ETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFL 314 (318)
Q Consensus 261 E~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~ 314 (318)
+.+|..|+.....|..+--.=.+++..+-+.|..||.+-..|..-|+.+|+.+.
T Consensus 13 e~ev~glq~K~~~L~~erc~Daqrleel~~knqqLreQqk~L~e~i~~LE~RLR 66 (120)
T PF10482_consen 13 EKEVQGLQNKLLELKKERCLDAQRLEELFSKNQQLREQQKTLHENIKVLENRLR 66 (120)
T ss_pred HHHHHHHHHHHHHHhHHHcccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHh
No 497
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=44.82 E-value=4e+02 Score=28.11 Aligned_cols=81 Identities=11% Similarity=0.044 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 232 DDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIE 311 (318)
Q Consensus 232 e~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~ 311 (318)
+.-+.++-+..+-.+.+.+.. ++.+++.+...++.+...+..++..+..++..+.+.....+....+-.+.+..+++
T Consensus 33 ~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~le~~~~~~~ek~~~l~~~~~ 109 (475)
T PRK10361 33 EQLAEREEMVAELSAAKQQIT---QSEHWRAECELLNNEVRSLQSINTSLEADLREVTTRMEAAQQHADDKIRQMINSEQ 109 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhh
Q 021065 312 IFLG 315 (318)
Q Consensus 312 ~v~~ 315 (318)
.++.
T Consensus 110 ~L~~ 113 (475)
T PRK10361 110 RLSE 113 (475)
T ss_pred HHHH
No 498
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=44.79 E-value=1.4e+02 Score=22.84 Aligned_cols=65 Identities=17% Similarity=0.216 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 021065 253 KQAHLNELETQAGQLRAEHSSLLKGLTDVN----QKYDESAVNNRILKADIETLRAKLYMFIEIFLGEN 317 (318)
Q Consensus 253 Kk~~l~eLE~qV~~L~~EN~~L~~~l~~L~----qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~~~ 317 (318)
+..-+.++..-...|..+...+..++..+- .++-.+.-+=..|+..+..|+..|..+...|.+++
T Consensus 17 ~~~s~~~i~~~~~~L~~~i~~~~~eLr~~V~~nY~~fI~as~~I~~m~~~~~~l~~~l~~l~~~~~~l~ 85 (87)
T PF08700_consen 17 KNSSIKEIRQLENKLRQEIEEKDEELRKLVYENYRDFIEASDEISSMENDLSELRNLLSELQQSIQSLQ 85 (87)
T ss_pred hhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 499
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=44.75 E-value=45 Score=33.21 Aligned_cols=38 Identities=21% Similarity=0.262 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 021065 279 TDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFLGE 316 (318)
Q Consensus 279 ~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~~ 316 (318)
..+...+..|..+|++||.++..++.+++.+.+.++.+
T Consensus 23 ~~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~l 60 (310)
T PF09755_consen 23 EQLRKRIESLQQENRVLKRELETEKARCKHLQEENRAL 60 (310)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
No 500
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=44.67 E-value=2.5e+02 Score=30.73 Aligned_cols=83 Identities=20% Similarity=0.224 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 233 DKRARRMLSNRESARRSRRRKQAHLNELE----TQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYM 308 (318)
Q Consensus 233 ~KR~RR~lsNRESArRSR~RKk~~l~eLE----~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~ 308 (318)
....++++.-........+++-+.+..++ .++..|+.+...|...+..+...+..+..++..+...+..+...|..
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~ 287 (670)
T KOG0239|consen 208 AQEERRVLADSLGNYADLRRNIKPLEGLESTIKKKIQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLES 287 (670)
T ss_pred hHHHHHHHHHHhhhhhhHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhhhh
Q 021065 309 FIEIFLG 315 (318)
Q Consensus 309 ~e~~v~~ 315 (318)
++..+..
T Consensus 288 ~~~~l~~ 294 (670)
T KOG0239|consen 288 LEENLVE 294 (670)
T ss_pred HHHHHHH
Done!