Query 021065
Match_columns 318
No_of_seqs 191 out of 772
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 12:14:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021065.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021065hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dh3_A Transcription factor CR 99.5 1.3E-14 4.5E-19 106.6 6.5 52 234-285 1-52 (55)
2 2wt7_A Proto-oncogene protein 99.3 1.3E-11 4.3E-16 92.5 9.1 55 233-287 1-55 (63)
3 1t2k_D Cyclic-AMP-dependent tr 99.2 4.2E-11 1.4E-15 88.9 8.9 52 234-285 1-52 (61)
4 2dgc_A Protein (GCN4); basic d 99.2 3E-11 1E-15 90.8 6.8 47 240-286 15-61 (63)
5 1jnm_A Proto-oncogene C-JUN; B 99.1 1.3E-10 4.3E-15 86.7 7.5 52 234-285 1-52 (62)
6 1gd2_E Transcription factor PA 99.0 1.2E-09 4E-14 84.0 8.3 60 236-295 10-69 (70)
7 1ci6_A Transcription factor AT 98.9 3.8E-09 1.3E-13 79.2 8.0 50 234-283 2-51 (63)
8 1hjb_A Ccaat/enhancer binding 98.6 2.4E-07 8.3E-12 73.8 9.8 51 232-282 13-63 (87)
9 1gu4_A CAAT/enhancer binding p 98.5 5.3E-07 1.8E-11 70.5 9.5 54 233-286 14-67 (78)
10 3a5t_A Transcription factor MA 98.5 3.6E-09 1.2E-13 87.3 -3.5 71 231-315 34-104 (107)
11 2wt7_B Transcription factor MA 98.2 7.7E-06 2.6E-10 65.6 9.9 52 231-282 24-75 (90)
12 2oqq_A Transcription factor HY 97.2 0.00074 2.5E-08 47.0 6.1 39 254-299 2-40 (42)
13 2jee_A YIIU; FTSZ, septum, coi 96.1 0.034 1.2E-06 43.7 8.8 51 259-309 24-74 (81)
14 3hnw_A Uncharacterized protein 96.0 0.045 1.5E-06 46.5 10.1 61 253-313 73-133 (138)
15 2jee_A YIIU; FTSZ, septum, coi 95.8 0.062 2.1E-06 42.2 9.1 64 255-318 6-76 (81)
16 1wlq_A Geminin; coiled-coil; 2 95.8 0.052 1.8E-06 42.8 8.5 49 266-318 35-83 (83)
17 1skn_P DNA-binding domain of S 95.7 0.0053 1.8E-07 49.2 2.6 32 231-262 59-90 (92)
18 1deb_A APC protein, adenomatou 95.1 0.081 2.8E-06 38.3 7.0 48 257-304 5-52 (54)
19 1go4_E MAD1 (mitotic arrest de 94.9 0.072 2.5E-06 43.3 7.0 30 256-285 13-42 (100)
20 3hnw_A Uncharacterized protein 94.3 0.3 1E-05 41.4 9.8 60 257-316 70-129 (138)
21 2w6a_A ARF GTPase-activating p 94.1 0.21 7.1E-06 37.3 7.4 41 257-297 22-62 (63)
22 3u1c_A Tropomyosin alpha-1 cha 93.5 1.9 6.4E-05 34.4 12.7 16 296-311 85-100 (101)
23 1ci6_A Transcription factor AT 93.4 0.23 8E-06 36.7 6.6 41 275-315 22-62 (63)
24 1hjb_A Ccaat/enhancer binding 93.2 0.84 2.9E-05 36.0 9.9 34 282-315 42-75 (87)
25 3s9g_A Protein hexim1; cyclin 93.1 0.5 1.7E-05 38.5 8.6 47 257-303 39-92 (104)
26 3a7p_A Autophagy protein 16; c 93.0 0.65 2.2E-05 40.3 9.8 55 255-311 89-143 (152)
27 2wvr_A Geminin; DNA replicatio 93.0 0.39 1.3E-05 43.5 8.7 48 267-318 113-160 (209)
28 2w83_C C-JUN-amino-terminal ki 93.0 0.86 2.9E-05 35.4 9.4 56 259-314 6-68 (77)
29 1t2k_D Cyclic-AMP-dependent tr 91.9 0.47 1.6E-05 34.5 6.5 38 276-313 22-59 (61)
30 2dfs_A Myosin-5A; myosin-V, in 91.8 1.7 5.8E-05 47.5 13.4 31 281-311 1021-1051(1080)
31 2wt7_A Proto-oncogene protein 91.6 0.52 1.8E-05 34.6 6.5 39 276-314 23-61 (63)
32 3u59_A Tropomyosin beta chain; 91.6 4 0.00014 32.3 12.2 15 297-311 86-100 (101)
33 1gu4_A CAAT/enhancer binding p 91.6 1.5 5.2E-05 33.9 9.4 37 279-315 39-75 (78)
34 3iv1_A Tumor susceptibility ge 91.5 2.2 7.4E-05 33.2 10.1 64 251-314 14-77 (78)
35 3he5_A Synzip1; heterodimeric 90.4 1.1 3.8E-05 31.2 6.8 43 257-306 5-47 (49)
36 2eqb_B RAB guanine nucleotide 90.4 1.8 6.2E-05 34.9 9.1 50 257-306 14-63 (97)
37 3m0d_C TNF receptor-associated 90.2 3.6 0.00012 30.4 10.0 62 253-314 4-65 (65)
38 3oja_B Anopheles plasmodium-re 90.2 3 0.0001 41.0 12.4 24 290-313 558-581 (597)
39 2zxx_A Geminin; coiled-coil, c 90.0 1.5 5.2E-05 34.2 8.1 45 267-311 32-76 (79)
40 3m48_A General control protein 90.0 0.35 1.2E-05 32.0 3.7 27 257-283 2-28 (33)
41 1gd2_E Transcription factor PA 89.9 0.55 1.9E-05 35.7 5.4 36 273-308 33-68 (70)
42 3o0z_A RHO-associated protein 89.5 2.2 7.6E-05 37.5 9.7 55 244-300 25-79 (168)
43 3cve_A Homer protein homolog 1 89.2 2.1 7.3E-05 32.8 8.2 53 259-311 4-60 (72)
44 2oxj_A Hybrid alpha/beta pepti 89.2 0.52 1.8E-05 31.3 4.1 27 256-282 2-28 (34)
45 3a7p_A Autophagy protein 16; c 89.2 8.9 0.0003 33.2 13.0 12 270-281 76-87 (152)
46 1p9i_A Cortexillin I/GCN4 hybr 89.1 0.49 1.7E-05 30.2 3.8 25 282-306 5-29 (31)
47 2c9l_Y EB1, zebra, BZLF1 trans 89.1 2.2 7.5E-05 31.4 7.8 37 239-275 6-42 (63)
48 3ghg_A Fibrinogen alpha chain; 89.1 2.1 7.2E-05 43.7 10.4 42 273-314 114-155 (562)
49 2v71_A Nuclear distribution pr 88.9 2.7 9.1E-05 37.6 9.9 53 257-309 90-142 (189)
50 3oja_B Anopheles plasmodium-re 88.9 3.2 0.00011 40.8 11.5 52 258-309 512-563 (597)
51 1kd8_B GABH BLL, GCN4 acid bas 88.8 0.76 2.6E-05 30.9 4.7 30 256-285 2-31 (36)
52 3jsv_C NF-kappa-B essential mo 88.6 5.6 0.00019 31.9 10.6 77 240-316 8-87 (94)
53 3m9b_A Proteasome-associated A 88.6 0.35 1.2E-05 45.0 4.2 39 257-295 56-94 (251)
54 3mq7_A Bone marrow stromal ant 88.5 2.3 7.8E-05 35.5 8.6 50 258-307 60-109 (121)
55 3he5_B Synzip2; heterodimeric 88.5 2.3 7.8E-05 30.0 7.3 46 270-315 4-49 (52)
56 2v71_A Nuclear distribution pr 88.4 9.2 0.00032 34.1 13.1 54 259-312 85-138 (189)
57 3efg_A Protein SLYX homolog; x 88.4 1.5 5E-05 33.8 6.9 49 255-310 14-62 (78)
58 1jnm_A Proto-oncogene C-JUN; B 88.4 0.55 1.9E-05 34.3 4.3 38 276-313 22-59 (62)
59 3o0z_A RHO-associated protein 88.3 7.2 0.00025 34.2 12.1 70 234-310 69-138 (168)
60 1ic2_A Tropomyosin alpha chain 88.1 2.5 8.5E-05 32.3 8.1 59 254-312 19-77 (81)
61 3s4r_A Vimentin; alpha-helix, 87.8 4.4 0.00015 31.9 9.6 30 278-307 58-87 (93)
62 2v66_B Nuclear distribution pr 87.7 10 0.00036 31.1 12.7 55 256-310 36-90 (111)
63 3cvf_A Homer-3, homer protein 87.6 1.4 4.8E-05 34.3 6.4 44 258-301 9-52 (79)
64 3he4_A Synzip6; heterodimeric 87.6 0.24 8.3E-06 35.4 1.9 34 282-315 23-56 (56)
65 3vmx_A Voltage-gated hydrogen 87.1 2 6.7E-05 30.7 6.3 38 261-298 3-40 (48)
66 2v4h_A NF-kappa-B essential mo 86.9 12 0.0004 30.8 12.7 75 241-315 31-108 (110)
67 2dfs_A Myosin-5A; myosin-V, in 86.7 6.8 0.00023 42.8 13.4 59 256-314 985-1047(1080)
68 3mq7_A Bone marrow stromal ant 86.5 3.5 0.00012 34.4 8.6 38 263-300 72-109 (121)
69 4emc_A Monopolin complex subun 86.5 4 0.00014 36.5 9.5 44 275-318 40-83 (190)
70 2xdj_A Uncharacterized protein 86.3 4.9 0.00017 31.3 8.9 47 256-302 21-67 (83)
71 1i84_S Smooth muscle myosin he 86.1 5.3 0.00018 43.7 12.2 28 284-311 914-941 (1184)
72 1kd8_A GABH AIV, GCN4 acid bas 86.1 0.95 3.2E-05 30.4 4.0 29 256-284 2-30 (36)
73 3c3f_A Alpha/beta peptide with 86.0 1 3.5E-05 29.9 4.1 27 256-282 2-28 (34)
74 2v66_B Nuclear distribution pr 85.7 6.1 0.00021 32.5 9.6 38 261-298 34-71 (111)
75 3a2a_A Voltage-gated hydrogen 85.5 2.2 7.6E-05 31.3 6.1 39 260-298 9-47 (58)
76 3swf_A CGMP-gated cation chann 85.5 4 0.00014 31.5 7.8 50 258-310 3-52 (74)
77 2oqq_A Transcription factor HY 85.4 2.6 8.9E-05 29.2 6.0 35 279-313 6-40 (42)
78 3m91_A Proteasome-associated A 85.1 4 0.00014 29.3 7.2 26 258-283 12-37 (51)
79 4h22_A Leucine-rich repeat fli 84.9 9 0.00031 31.2 10.0 81 230-313 6-88 (103)
80 2w83_C C-JUN-amino-terminal ki 84.8 4.1 0.00014 31.6 7.6 52 265-316 26-77 (77)
81 3efg_A Protein SLYX homolog; x 84.8 2.4 8.3E-05 32.6 6.4 50 259-315 11-60 (78)
82 2kz5_A Transcription factor NF 84.8 0.078 2.7E-06 42.4 -2.1 25 231-255 63-87 (91)
83 4emc_A Monopolin complex subun 84.7 2.1 7.3E-05 38.3 6.8 48 256-310 14-61 (190)
84 3bas_A Myosin heavy chain, str 84.6 10 0.00035 29.4 10.1 52 255-306 35-86 (89)
85 1ic2_A Tropomyosin alpha chain 84.5 8.4 0.00029 29.3 9.4 8 292-299 50-57 (81)
86 3c3g_A Alpha/beta peptide with 84.5 1.3 4.6E-05 29.2 4.1 26 257-282 2-27 (33)
87 1uo4_A General control protein 84.5 1.2 4.2E-05 29.5 3.9 28 256-283 2-29 (34)
88 3he5_A Synzip1; heterodimeric 84.5 5.5 0.00019 27.7 7.4 30 284-313 11-40 (49)
89 4etp_A Kinesin-like protein KA 84.3 3.3 0.00011 40.3 8.7 52 253-304 8-59 (403)
90 2lw1_A ABC transporter ATP-bin 84.0 6.5 0.00022 30.3 8.6 59 254-312 21-85 (89)
91 3m91_A Proteasome-associated A 83.9 3.7 0.00013 29.4 6.6 36 281-316 14-49 (51)
92 1wt6_A Myotonin-protein kinase 83.9 14 0.00047 28.9 10.3 58 242-309 14-71 (81)
93 2w6b_A RHO guanine nucleotide 83.8 4.5 0.00015 29.6 7.0 43 274-316 8-50 (56)
94 2dgc_A Protein (GCN4); basic d 83.7 1.4 4.9E-05 32.5 4.5 32 276-307 30-61 (63)
95 3vkg_A Dynein heavy chain, cyt 83.7 2.9 9.8E-05 50.7 9.3 59 259-317 2025-2083(3245)
96 3na7_A HP0958; flagellar bioge 83.6 7.6 0.00026 35.1 10.3 72 243-314 41-114 (256)
97 2bni_A General control protein 83.5 1.4 4.9E-05 29.2 3.9 28 256-283 2-29 (34)
98 2hy6_A General control protein 83.4 1.5 5E-05 29.2 3.9 28 256-283 2-29 (34)
99 3swy_A Cyclic nucleotide-gated 83.4 5.1 0.00017 28.2 7.0 44 259-305 2-45 (46)
100 2yy0_A C-MYC-binding protein; 83.0 2 6.9E-05 30.8 4.9 19 262-280 19-37 (53)
101 3u59_A Tropomyosin beta chain; 82.8 16 0.00054 28.8 13.0 50 256-305 24-73 (101)
102 4h22_A Leucine-rich repeat fli 82.7 4.3 0.00015 33.1 7.3 52 263-314 31-82 (103)
103 1nkp_B MAX protein, MYC proto- 82.5 1.6 5.5E-05 33.2 4.6 7 256-262 20-26 (83)
104 3na7_A HP0958; flagellar bioge 82.5 27 0.00093 31.4 13.8 49 257-305 92-140 (256)
105 3m9b_A Proteasome-associated A 82.5 1.5 5E-05 40.8 5.1 42 261-302 53-94 (251)
106 1deq_A Fibrinogen (alpha chain 82.0 4.5 0.00016 39.7 8.5 44 270-313 114-157 (390)
107 2oa5_A Hypothetical protein BQ 81.8 5.4 0.00018 32.9 7.6 25 255-279 8-32 (110)
108 2wq1_A General control protein 81.8 2 6.9E-05 28.3 4.1 26 257-282 2-27 (33)
109 3a7o_A Autophagy protein 16; c 81.5 6 0.00021 30.4 7.3 50 255-304 25-74 (75)
110 3u1c_A Tropomyosin alpha-1 cha 81.4 18 0.00063 28.6 13.2 49 257-305 25-73 (101)
111 1t6f_A Geminin; coiled-coil, c 81.2 2.9 9.9E-05 28.1 4.8 29 268-296 6-34 (37)
112 3i00_A HIP-I, huntingtin-inter 80.9 5.8 0.0002 32.8 7.7 48 252-306 37-84 (120)
113 1x8y_A Lamin A/C; structural p 80.5 16 0.00056 28.1 9.7 53 254-306 27-79 (86)
114 3bas_A Myosin heavy chain, str 80.4 18 0.00062 28.0 12.8 59 256-314 29-87 (89)
115 3u06_A Protein claret segregat 80.3 4.6 0.00016 39.5 8.0 50 255-304 10-59 (412)
116 2yy0_A C-MYC-binding protein; 80.1 3.2 0.00011 29.8 5.1 27 271-297 21-47 (53)
117 1gk6_A Vimentin; intermediate 80.1 6.9 0.00024 28.3 7.0 50 257-306 2-51 (59)
118 2fxo_A Myosin heavy chain, car 80.0 17 0.00057 29.8 10.3 41 276-316 62-102 (129)
119 1wt6_A Myotonin-protein kinase 79.7 14 0.00048 28.9 9.0 37 252-288 35-71 (81)
120 1m1j_A Fibrinogen alpha subuni 79.6 9.9 0.00034 38.3 10.1 44 271-314 113-156 (491)
121 3tnu_B Keratin, type II cytosk 79.3 15 0.0005 30.1 9.6 28 258-285 46-73 (129)
122 2b9c_A Striated-muscle alpha t 78.7 29 0.001 29.4 12.0 76 235-316 38-113 (147)
123 3ra3_B P2F; coiled coil domain 78.6 1.7 5.7E-05 27.2 2.7 24 287-310 4-27 (28)
124 3oja_A Leucine-rich immune mol 78.6 24 0.00081 33.9 12.4 26 285-310 444-469 (487)
125 2ve7_C Kinetochore protein NUF 78.2 3.2 0.00011 38.1 5.8 57 232-288 118-181 (250)
126 1nlw_A MAD protein, MAX dimeri 78.2 4.2 0.00014 31.2 5.6 27 255-281 47-73 (80)
127 1dh3_A Transcription factor CR 78.1 2.2 7.4E-05 30.7 3.7 31 276-306 22-52 (55)
128 3m0a_A TNF receptor-associated 78.1 17 0.00058 26.3 9.8 58 257-314 7-64 (66)
129 3s9g_A Protein hexim1; cyclin 77.8 6.6 0.00023 31.9 6.8 43 274-316 35-77 (104)
130 1m1j_B Fibrinogen beta chain; 77.6 34 0.0012 34.2 13.4 22 293-314 171-192 (464)
131 1uii_A Geminin; human, DNA rep 77.2 15 0.00052 28.8 8.6 31 267-297 44-74 (83)
132 1wle_A Seryl-tRNA synthetase; 76.7 20 0.00069 35.9 11.6 27 287-313 120-146 (501)
133 2wt7_B Transcription factor MA 76.6 20 0.00068 28.4 9.2 54 247-307 29-86 (90)
134 1a93_B MAX protein, coiled coi 75.9 4 0.00014 27.1 4.2 27 276-302 7-33 (34)
135 1ik9_A DNA repair protein XRCC 75.9 16 0.00054 32.8 9.6 29 254-282 138-166 (213)
136 2xv5_A Lamin-A/C; structural p 75.8 18 0.00063 27.4 8.6 50 257-306 7-56 (74)
137 4b4t_K 26S protease regulatory 75.2 3.7 0.00013 40.3 5.7 45 271-315 44-88 (428)
138 3tnu_A Keratin, type I cytoske 75.2 13 0.00044 30.6 8.2 25 259-283 49-73 (131)
139 2xdj_A Uncharacterized protein 75.0 11 0.00038 29.3 7.3 40 251-290 23-62 (83)
140 2oxj_A Hybrid alpha/beta pepti 74.6 5 0.00017 26.6 4.3 29 278-306 3-31 (34)
141 3ol1_A Vimentin; structural ge 74.5 27 0.00093 28.3 9.9 36 274-309 67-102 (119)
142 1dip_A Delta-sleep-inducing pe 74.3 1.9 6.4E-05 33.4 2.6 25 273-297 19-43 (78)
143 2oto_A M protein; helical coil 73.5 29 0.00099 29.1 10.2 31 258-288 53-83 (155)
144 1wle_A Seryl-tRNA synthetase; 72.9 17 0.00058 36.5 9.9 62 255-316 70-142 (501)
145 1fmh_A General control protein 72.8 7.3 0.00025 25.2 4.7 25 258-282 4-28 (33)
146 1lwu_C Fibrinogen gamma chain; 72.3 11 0.00038 36.0 8.0 18 295-312 38-55 (323)
147 1dip_A Delta-sleep-inducing pe 72.3 3.9 0.00013 31.6 4.0 22 255-276 22-43 (78)
148 1go4_E MAD1 (mitotic arrest de 71.7 6.7 0.00023 31.7 5.5 33 276-308 12-44 (100)
149 2ocy_A RAB guanine nucleotide 71.6 15 0.00052 31.7 8.0 34 282-315 107-140 (154)
150 1nkp_A C-MYC, MYC proto-oncoge 71.6 11 0.00037 29.2 6.5 15 288-302 71-85 (88)
151 2r2v_A GCN4 leucine zipper; co 71.6 5.7 0.00019 26.4 4.1 27 256-282 2-28 (34)
152 3nmd_A CGMP dependent protein 71.5 15 0.0005 28.1 7.0 27 253-279 38-64 (72)
153 2akf_A Coronin-1A; coiled coil 71.3 7.5 0.00026 25.1 4.5 27 288-314 4-30 (32)
154 2wuj_A Septum site-determining 71.3 3.4 0.00012 29.8 3.3 27 255-281 27-53 (57)
155 3ra3_A P1C; coiled coil domain 70.6 3.2 0.00011 26.0 2.5 23 287-309 4-26 (28)
156 1joc_A EEA1, early endosomal a 70.5 28 0.00097 28.4 9.2 44 255-298 11-54 (125)
157 2ve7_C Kinetochore protein NUF 70.5 2.8 9.5E-05 38.5 3.3 42 271-312 143-184 (250)
158 3htk_A Structural maintenance 69.9 21 0.00071 25.1 7.3 27 261-287 11-37 (60)
159 2i1j_A Moesin; FERM, coiled-co 69.9 3.5 0.00012 41.9 4.2 60 257-316 337-396 (575)
160 1ses_A Seryl-tRNA synthetase; 69.9 26 0.00088 34.2 10.2 60 255-314 28-95 (421)
161 3mq9_A Bone marrow stromal ant 69.5 45 0.0016 31.8 11.8 23 293-315 446-468 (471)
162 1gk7_A Vimentin; intermediate 69.5 6.5 0.00022 26.6 4.2 29 272-300 9-37 (39)
163 1am9_A Srebp-1A, protein (ster 69.2 7.4 0.00025 29.7 5.0 69 240-309 8-76 (82)
164 3oja_A Leucine-rich immune mol 69.1 40 0.0014 32.3 11.4 33 252-284 432-464 (487)
165 4etp_A Kinesin-like protein KA 69.1 12 0.00041 36.3 7.7 26 257-282 5-30 (403)
166 3m48_A General control protein 68.9 5.4 0.00018 26.3 3.5 28 279-306 3-30 (33)
167 2wuj_A Septum site-determining 68.5 5.1 0.00017 28.8 3.7 29 278-306 29-57 (57)
168 1fmh_B General control protein 68.4 8.8 0.0003 24.8 4.3 29 278-306 3-31 (33)
169 1p9i_A Cortexillin I/GCN4 hybr 68.2 7.3 0.00025 24.8 3.9 27 258-284 2-28 (31)
170 3qne_A Seryl-tRNA synthetase, 67.6 41 0.0014 33.7 11.3 53 262-314 47-102 (485)
171 2dq0_A Seryl-tRNA synthetase; 67.1 71 0.0024 31.4 12.9 53 262-314 45-100 (455)
172 2efr_A General control protein 67.0 44 0.0015 28.8 9.9 55 262-316 98-152 (155)
173 2j5u_A MREC protein; bacterial 66.6 2.8 9.4E-05 38.4 2.4 32 267-298 24-58 (255)
174 1kd8_B GABH BLL, GCN4 acid bas 66.4 11 0.00038 25.2 4.7 29 279-307 4-32 (36)
175 3mq9_A Bone marrow stromal ant 66.3 42 0.0014 32.0 10.8 38 273-310 433-470 (471)
176 2l5g_B Putative uncharacterize 66.2 16 0.00053 25.4 5.5 34 280-313 6-39 (42)
177 3q0x_A Centriole protein; cent 65.8 26 0.00089 32.0 8.7 57 232-294 161-217 (228)
178 3tnu_B Keratin, type II cytosk 65.5 54 0.0018 26.6 9.9 48 257-304 77-124 (129)
179 3qne_A Seryl-tRNA synthetase, 64.6 23 0.0008 35.5 8.9 61 255-315 33-96 (485)
180 2oto_A M protein; helical coil 63.9 63 0.0022 26.9 10.7 28 279-306 53-80 (155)
181 3vkg_A Dynein heavy chain, cyt 63.7 26 0.00089 42.8 10.4 31 242-272 2022-2052(3245)
182 2fxo_A Myosin heavy chain, car 63.6 59 0.002 26.5 13.8 54 257-310 64-117 (129)
183 3ra3_A P1C; coiled coil domain 62.1 5.3 0.00018 24.9 2.3 24 265-288 3-26 (28)
184 3c3f_A Alpha/beta peptide with 61.5 14 0.00047 24.5 4.3 28 279-306 4-31 (34)
185 2e7s_A RAB guanine nucleotide 61.5 32 0.0011 29.1 7.9 51 256-306 33-83 (135)
186 3q8t_A Beclin-1; autophagy, AT 61.2 58 0.002 25.6 12.1 55 255-309 39-93 (96)
187 3qh9_A Liprin-beta-2; coiled-c 61.1 57 0.0019 25.5 8.8 22 289-310 53-74 (81)
188 1nkp_A C-MYC, MYC proto-oncoge 61.1 33 0.0011 26.5 7.4 14 254-267 22-35 (88)
189 3trt_A Vimentin; cytoskeleton, 60.5 48 0.0016 24.4 9.5 33 258-290 38-70 (77)
190 2zvf_A Alanyl-tRNA synthetase; 59.9 7.8 0.00027 32.3 3.9 23 284-306 33-55 (171)
191 3c3g_A Alpha/beta peptide with 59.9 15 0.00052 24.2 4.3 28 279-306 3-30 (33)
192 3i00_A HIP-I, huntingtin-inter 59.7 43 0.0015 27.6 8.2 14 255-268 47-60 (120)
193 1kd8_A GABH AIV, GCN4 acid bas 59.5 15 0.0005 24.7 4.3 28 281-308 6-33 (36)
194 2b5u_A Colicin E3; high resolu 59.3 1.1E+02 0.0038 31.2 12.5 81 224-313 287-372 (551)
195 3ghg_A Fibrinogen alpha chain; 58.5 38 0.0013 34.7 9.1 93 222-316 49-150 (562)
196 1fmh_A General control protein 58.4 14 0.00046 23.9 3.8 28 279-306 4-31 (33)
197 2fic_A Bridging integrator 1; 58.3 74 0.0025 27.8 10.2 24 276-302 186-209 (251)
198 1am9_A Srebp-1A, protein (ster 58.0 55 0.0019 24.7 8.1 27 254-280 49-75 (82)
199 1uix_A RHO-associated kinase; 57.8 60 0.002 24.7 8.2 30 260-289 2-31 (71)
200 3l4f_A RHO guanine nucleotide 57.5 29 0.00099 25.8 6.1 33 284-316 15-47 (61)
201 3ol1_A Vimentin; structural ge 57.2 75 0.0026 25.7 9.6 38 266-303 66-103 (119)
202 1j1d_B Troponin T, TNT; THIN f 56.7 74 0.0025 25.7 9.0 46 265-310 45-90 (106)
203 1gk4_A Vimentin; intermediate 55.8 65 0.0022 24.5 12.2 72 233-306 6-77 (84)
204 2ocy_A RAB guanine nucleotide 55.8 99 0.0034 26.6 12.7 26 289-314 107-132 (154)
205 1jcd_A Major outer membrane li 55.8 53 0.0018 23.4 7.7 28 257-284 6-33 (52)
206 1nlw_A MAD protein, MAX dimeri 55.7 15 0.00052 28.0 4.5 25 283-307 54-78 (80)
207 3cvf_A Homer-3, homer protein 55.5 69 0.0024 24.7 8.4 47 256-302 28-74 (79)
208 2ve7_A Kinetochore protein HEC 54.3 26 0.00089 32.9 6.9 49 260-311 183-231 (315)
209 1zme_C Proline utilization tra 53.2 12 0.00042 26.5 3.4 24 255-278 44-67 (70)
210 3lss_A Seryl-tRNA synthetase; 53.1 51 0.0018 33.0 9.1 26 289-314 109-135 (484)
211 1uii_A Geminin; human, DNA rep 52.5 64 0.0022 25.3 7.6 31 276-306 46-76 (83)
212 2q6q_A Spindle POLE BODY compo 52.5 75 0.0026 24.2 9.2 52 259-310 7-58 (74)
213 1s1c_X RHO-associated, coiled- 52.1 75 0.0026 24.1 9.3 31 259-289 3-33 (71)
214 2q6q_A Spindle POLE BODY compo 51.4 59 0.002 24.8 7.0 53 263-315 18-70 (74)
215 3w03_C DNA repair protein XRCC 51.4 22 0.00077 31.5 5.5 30 255-284 152-181 (184)
216 1ytz_T Troponin T; muscle, THI 51.3 46 0.0016 27.0 6.9 63 247-309 20-89 (107)
217 3e98_A GAF domain of unknown f 50.1 29 0.001 31.5 6.3 46 258-307 68-113 (252)
218 2p4v_A Transcription elongatio 50.1 54 0.0018 27.7 7.6 52 257-308 11-71 (158)
219 3tnu_A Keratin, type I cytoske 49.7 1E+02 0.0035 25.0 11.9 49 256-304 78-126 (131)
220 1lrz_A FEMA, factor essential 49.5 40 0.0014 32.1 7.4 58 255-313 247-304 (426)
221 2j5u_A MREC protein; bacterial 49.3 8.3 0.00028 35.2 2.5 19 258-276 39-57 (255)
222 3htk_A Structural maintenance 49.3 64 0.0022 22.5 9.2 48 253-300 10-57 (60)
223 2hy6_A General control protein 49.2 29 0.00098 23.0 4.3 27 280-306 5-31 (34)
224 4ath_A MITF, microphthalmia-as 48.5 39 0.0013 26.4 5.8 26 256-281 50-75 (83)
225 2p22_A Suppressor protein STP2 48.5 60 0.0021 28.4 7.8 37 268-304 48-84 (174)
226 3mov_A Lamin-B1; LMNB1, B-type 47.7 20 0.00068 28.4 4.2 53 254-306 36-88 (95)
227 1a93_B MAX protein, coiled coi 47.6 31 0.0011 22.8 4.4 25 290-314 7-31 (34)
228 2dq3_A Seryl-tRNA synthetase; 47.6 56 0.0019 31.8 8.2 59 257-315 32-100 (425)
229 4dk0_A Putative MACA; alpha-ha 46.6 1.2E+02 0.004 27.6 9.9 39 277-315 116-154 (369)
230 2xzr_A Immunoglobulin-binding 46.6 1.2E+02 0.004 24.7 10.5 32 285-316 71-102 (114)
231 3nmd_A CGMP dependent protein 46.3 70 0.0024 24.4 6.8 31 273-303 37-67 (72)
232 3mov_A Lamin-B1; LMNB1, B-type 46.3 1.1E+02 0.0036 24.1 10.3 37 255-291 44-80 (95)
233 1ik9_A DNA repair protein XRCC 45.8 1.2E+02 0.004 27.1 9.4 31 258-288 135-165 (213)
234 3lay_A Zinc resistance-associa 45.7 56 0.0019 28.4 7.1 21 284-304 114-134 (175)
235 3swf_A CGMP-gated cation chann 45.3 93 0.0032 23.8 7.4 15 274-288 12-26 (74)
236 2xnx_M M protein, M1-BC1; cell 45.1 1.5E+02 0.005 25.4 10.4 23 288-310 85-107 (146)
237 1gk4_A Vimentin; intermediate 45.0 99 0.0034 23.4 8.1 16 285-300 35-50 (84)
238 3trt_A Vimentin; cytoskeleton, 44.5 90 0.0031 22.8 9.3 22 286-307 52-73 (77)
239 1m1j_C Fibrinogen gamma chain; 44.5 2.4E+02 0.0081 27.6 13.1 17 295-311 117-133 (409)
240 1grj_A GREA protein; transcrip 44.4 85 0.0029 26.4 7.9 53 257-309 11-72 (158)
241 2bni_A General control protein 44.4 29 0.001 22.9 3.8 27 279-305 4-30 (34)
242 2f1m_A Acriflavine resistance 44.1 1.6E+02 0.0055 25.6 10.2 24 291-314 106-129 (277)
243 3swk_A Vimentin; cytoskeleton, 43.9 1.1E+02 0.0037 23.5 8.6 14 260-273 5-18 (86)
244 3lay_A Zinc resistance-associa 43.6 1.5E+02 0.0053 25.6 9.6 9 121-129 30-38 (175)
245 1lq7_A Alpha3W; three helix bu 43.1 27 0.00094 25.6 3.9 58 258-315 5-66 (67)
246 2wq1_A General control protein 42.5 43 0.0015 22.0 4.3 24 281-304 5-28 (33)
247 1uo4_A General control protein 42.4 30 0.001 22.9 3.6 26 280-305 5-30 (34)
248 3gpv_A Transcriptional regulat 42.2 55 0.0019 27.0 6.3 35 280-314 99-133 (148)
249 4b4t_K 26S protease regulatory 41.7 39 0.0013 33.0 6.1 45 258-309 45-89 (428)
250 2zqm_A Prefoldin beta subunit 41.6 1.2E+02 0.0041 23.4 10.5 35 281-315 75-109 (117)
251 3ra3_B P2F; coiled coil domain 41.6 22 0.00076 22.1 2.8 14 267-280 5-18 (28)
252 1hlo_A Protein (transcription 41.6 18 0.0006 27.2 2.9 14 254-267 28-41 (80)
253 1joc_A EEA1, early endosomal a 41.5 60 0.0021 26.4 6.3 46 259-304 8-53 (125)
254 2lz1_A Nuclear factor erythroi 41.3 0.48 1.6E-05 37.8 -6.1 23 232-254 64-86 (90)
255 3s4r_A Vimentin; alpha-helix, 41.0 1.3E+02 0.0043 23.5 10.1 23 262-284 23-45 (93)
256 2k48_A Nucleoprotein; viral pr 40.9 1.5E+02 0.005 24.2 9.4 17 297-313 82-98 (107)
257 3oa7_A Head morphogenesis prot 40.9 95 0.0033 28.0 7.9 39 264-302 32-70 (206)
258 3csx_A Putative uncharacterize 40.7 1.1E+02 0.0036 23.9 7.2 10 232-241 19-28 (81)
259 3lss_A Seryl-tRNA synthetase; 40.4 1.1E+02 0.0037 30.7 9.1 20 296-315 109-129 (484)
260 3iox_A AGI/II, PA; alpha helix 40.3 1.1E+02 0.0038 31.0 9.1 58 257-314 36-97 (497)
261 2dq0_A Seryl-tRNA synthetase; 40.2 93 0.0032 30.6 8.5 62 255-316 31-95 (455)
262 1l8d_A DNA double-strand break 40.2 1.3E+02 0.0043 23.3 10.1 12 256-267 32-43 (112)
263 4ati_A MITF, microphthalmia-as 40.1 68 0.0023 26.0 6.4 28 238-265 27-54 (118)
264 3plt_A Sphingolipid long chain 39.8 79 0.0027 29.0 7.4 64 234-302 93-157 (234)
265 4dk0_A Putative MACA; alpha-ha 39.5 94 0.0032 28.2 8.0 30 285-314 117-146 (369)
266 4dzo_A Mitotic spindle assembl 39.4 57 0.0019 26.8 5.8 32 255-286 4-35 (123)
267 3swk_A Vimentin; cytoskeleton, 38.8 1.3E+02 0.0045 23.0 8.2 14 293-306 66-79 (86)
268 4ati_A MITF, microphthalmia-as 38.4 12 0.00041 30.5 1.6 20 286-305 94-113 (118)
269 2aze_A Transcription factor DP 38.1 80 0.0027 27.3 6.8 18 251-268 22-39 (155)
270 2er8_A Regulatory protein Leu3 37.9 18 0.0006 25.9 2.3 21 254-274 48-68 (72)
271 4ath_A MITF, microphthalmia-as 37.9 1.4E+02 0.0049 23.2 7.5 42 254-306 38-79 (83)
272 3w03_C DNA repair protein XRCC 37.0 1.1E+02 0.0036 27.1 7.5 33 255-287 145-177 (184)
273 1ez3_A Syntaxin-1A; three heli 36.8 83 0.0028 24.6 6.3 65 254-318 18-82 (127)
274 3q0x_A Centriole protein; cent 36.7 1.4E+02 0.0049 27.1 8.6 39 273-311 175-213 (228)
275 1f5n_A Interferon-induced guan 36.3 2.4E+02 0.0082 28.7 11.1 73 233-305 507-582 (592)
276 2zvf_A Alanyl-tRNA synthetase; 36.3 81 0.0028 26.0 6.5 30 259-288 29-58 (171)
277 1zxa_A CGMP-dependent protein 36.3 70 0.0024 24.0 5.3 32 251-282 21-52 (67)
278 3swy_A Cyclic nucleotide-gated 36.2 1.1E+02 0.0037 21.4 7.3 42 267-311 3-44 (46)
279 2v4h_A NF-kappa-B essential mo 36.1 1.8E+02 0.0061 23.8 10.1 45 263-307 63-107 (110)
280 2oa5_A Hypothetical protein BQ 36.0 20 0.00067 29.5 2.4 23 264-286 10-32 (110)
281 1hlo_A Protein (transcription 35.9 35 0.0012 25.5 3.7 21 284-304 58-78 (80)
282 2js5_A Uncharacterized protein 35.7 1.4E+02 0.0049 22.6 8.5 14 297-310 52-65 (71)
283 3he4_A Synzip6; heterodimeric 35.5 55 0.0019 23.2 4.4 35 256-290 18-52 (56)
284 3t98_B Nucleoporin NUP58/NUP45 35.4 1.6E+02 0.0054 23.1 7.6 64 255-318 26-93 (93)
285 2w6b_A RHO guanine nucleotide 35.4 81 0.0028 22.9 5.3 23 258-280 13-35 (56)
286 1d7m_A Cortexillin I; coiled-c 35.1 1.7E+02 0.0059 23.3 9.6 46 243-288 13-58 (101)
287 3fpp_A Macrolide-specific effl 34.8 2.5E+02 0.0085 25.1 10.1 18 294-311 125-142 (341)
288 1jcd_A Major outer membrane li 34.7 1.2E+02 0.0042 21.5 7.7 18 263-280 5-22 (52)
289 1m1j_C Fibrinogen gamma chain; 34.6 3.4E+02 0.011 26.5 12.5 44 273-316 88-131 (409)
290 3onj_A T-snare VTI1; helix, HA 34.6 1.6E+02 0.0054 22.8 9.6 60 252-311 31-94 (97)
291 3q8t_A Beclin-1; autophagy, AT 34.5 1.6E+02 0.0056 22.9 13.1 48 260-307 23-70 (96)
292 4fi5_A Nucleoprotein; structur 34.5 1.9E+02 0.0066 23.7 8.9 14 299-312 71-84 (113)
293 4b4t_M 26S protease regulatory 34.4 35 0.0012 33.5 4.4 13 294-306 57-69 (434)
294 1m1j_B Fibrinogen beta chain; 34.3 3E+02 0.01 27.5 11.1 59 254-312 134-197 (464)
295 2ic9_A Nucleocapsid protein; h 34.2 1.8E+02 0.0061 23.3 8.9 19 296-314 51-69 (96)
296 3thf_A Protein shroom; coiled- 33.6 2.6E+02 0.0088 24.9 10.8 30 251-280 15-44 (190)
297 2zxx_A Geminin; coiled-coil, c 32.8 1.1E+02 0.0039 23.6 6.2 19 256-274 42-60 (79)
298 3a2a_A Voltage-gated hydrogen 32.7 1.3E+02 0.0045 21.9 6.1 25 258-282 21-45 (58)
299 3bbp_D GRIP and coiled-coil do 32.6 43 0.0015 25.5 3.6 37 276-312 29-65 (71)
300 3ghg_C Fibrinogen gamma chain; 32.5 3.7E+02 0.013 26.4 11.3 42 274-315 89-130 (411)
301 3c9i_A Tail needle protein GP2 32.0 2.9E+02 0.01 25.1 9.9 34 280-313 109-142 (242)
302 3brv_B NF-kappa-B essential mo 32.0 1.7E+02 0.0057 22.2 8.9 53 265-317 11-67 (70)
303 1g6u_A Domain swapped dimer; d 31.6 1.3E+02 0.0044 20.8 6.0 21 287-307 24-44 (48)
304 4fla_A Regulation of nuclear P 31.4 2.4E+02 0.0082 23.8 10.0 61 254-314 85-145 (152)
305 2f23_A Anti-cleavage anti-GREA 31.4 1.9E+02 0.0064 24.1 8.0 24 285-308 48-71 (156)
306 4gkw_A Spindle assembly abnorm 30.8 2.5E+02 0.0086 23.9 10.1 21 298-318 99-119 (167)
307 2akf_A Coronin-1A; coiled coil 30.7 1.1E+02 0.0037 19.7 5.0 25 259-283 3-27 (32)
308 3fpp_A Macrolide-specific effl 30.6 1.7E+02 0.0057 26.3 8.1 40 276-315 114-153 (341)
309 2xv5_A Lamin-A/C; structural p 30.4 1.7E+02 0.0059 21.9 8.7 49 249-297 6-54 (74)
310 2yo3_A General control protein 30.3 1.6E+02 0.0054 27.5 7.9 50 247-296 208-257 (268)
311 4e61_A Protein BIM1; EB1-like 29.9 2.2E+02 0.0076 23.0 9.6 7 259-265 22-28 (106)
312 4dzo_A Mitotic spindle assembl 29.5 97 0.0033 25.4 5.7 38 278-318 6-43 (123)
313 3rrk_A V-type ATPase 116 kDa s 28.9 2.9E+02 0.01 25.2 9.6 30 255-284 226-255 (357)
314 1gmj_A ATPase inhibitor; coile 28.7 2.1E+02 0.0071 22.3 9.6 11 240-250 22-32 (84)
315 2l5g_A GPS2 protein, G protein 28.7 63 0.0022 21.8 3.5 21 255-275 15-35 (38)
316 3iox_A AGI/II, PA; alpha helix 28.6 4.7E+02 0.016 26.4 13.1 21 262-282 34-54 (497)
317 4gkw_A Spindle assembly abnorm 28.5 2.8E+02 0.0095 23.7 10.2 21 292-312 97-117 (167)
318 4dyl_A Tyrosine-protein kinase 28.4 3.8E+02 0.013 25.3 10.9 64 246-309 321-392 (406)
319 3mtu_A Tropomyosin alpha-1 cha 28.4 1.3E+02 0.0046 22.5 5.9 45 255-299 16-60 (75)
320 2p4v_A Transcription elongatio 28.4 2E+02 0.007 24.0 7.7 52 264-315 11-71 (158)
321 2qyw_A Vesicle transport throu 28.2 2.1E+02 0.0073 22.3 7.8 31 251-281 45-75 (102)
322 2cly_A ATP synthase B chain, m 28.1 1.8E+02 0.0061 26.1 7.7 34 262-295 122-155 (214)
323 1deb_A APC protein, adenomatou 28.0 1.7E+02 0.0057 21.0 7.8 30 281-310 8-37 (54)
324 1fmh_B General control protein 27.9 1.2E+02 0.0042 19.4 5.0 27 258-284 4-30 (33)
325 1g6u_A Domain swapped dimer; d 27.9 1.1E+02 0.0036 21.2 4.6 15 266-280 24-38 (48)
326 1qsd_A Protein (beta-tubulin b 27.8 2E+02 0.0068 23.0 7.1 7 236-242 13-19 (106)
327 3cve_A Homer protein homolog 1 27.8 2E+02 0.0068 21.8 10.7 46 256-301 22-67 (72)
328 4ani_A Protein GRPE; chaperone 27.6 2.1E+02 0.0073 25.6 8.0 29 256-284 67-95 (213)
329 2r2v_A GCN4 leucine zipper; co 27.5 1E+02 0.0036 20.3 4.3 24 281-304 6-29 (34)
330 2ic6_A Nucleocapsid protein; h 27.3 2.1E+02 0.0073 22.0 7.0 19 296-314 51-69 (78)
331 2lw1_A ABC transporter ATP-bin 27.1 2E+02 0.0069 21.7 7.4 48 255-302 29-82 (89)
332 1hwt_C Protein (heme activator 27.0 35 0.0012 24.7 2.3 20 298-317 59-78 (81)
333 3aon_A V-type sodium ATPase su 26.9 3.2E+02 0.011 23.9 10.5 34 271-304 33-66 (217)
334 3bbp_D GRIP and coiled-coil do 26.5 60 0.0021 24.7 3.5 15 288-302 48-62 (71)
335 2wvr_A Geminin; DNA replicatio 26.4 3.3E+02 0.011 24.6 8.9 18 257-274 124-141 (209)
336 1fio_A SSO1 protein; four heli 26.4 1.8E+02 0.0063 24.2 7.1 16 273-288 88-103 (196)
337 1fxk_A Prefoldin; archaeal pro 26.3 2.1E+02 0.0072 21.6 11.0 37 280-316 69-105 (107)
338 3n7n_E Monopolin complex subun 26.2 14 0.00048 29.6 0.0 50 266-315 40-93 (95)
339 3mtu_A Tropomyosin alpha-1 cha 26.2 1.7E+02 0.0057 21.9 6.0 26 258-283 5-30 (75)
340 2xnx_M M protein, M1-BC1; cell 26.2 3.1E+02 0.01 23.4 10.1 33 279-311 69-101 (146)
341 2zqm_A Prefoldin beta subunit 25.8 2.2E+02 0.0077 21.7 7.4 37 272-308 73-109 (117)
342 1h7c_A Tubulin-specific chaper 25.7 1.8E+02 0.0063 23.2 6.6 15 292-306 68-82 (108)
343 2e7s_A RAB guanine nucleotide 25.5 1.7E+02 0.0059 24.6 6.6 22 292-313 98-119 (135)
344 3qh9_A Liprin-beta-2; coiled-c 25.5 2.4E+02 0.0081 21.9 10.3 18 296-313 53-70 (81)
345 3fx0_A NF-kappa-B essential mo 25.4 30 0.001 27.8 1.8 54 252-305 35-91 (96)
346 2aze_A Transcription factor DP 25.4 1.8E+02 0.0062 25.1 6.8 25 265-289 8-32 (155)
347 2yko_A LINE-1 ORF1P; RNA-bindi 25.3 1.4E+02 0.0047 27.4 6.4 24 259-282 3-26 (233)
348 1j1d_C Troponin I, TNI; THIN f 25.3 2.8E+02 0.0096 23.2 7.9 46 265-310 61-106 (133)
349 2gkw_A TNF receptor-associated 25.3 1.2E+02 0.0039 25.8 5.7 32 258-289 3-34 (192)
350 4ani_A Protein GRPE; chaperone 24.9 2E+02 0.0069 25.7 7.4 22 257-278 61-82 (213)
351 3v86_A De novo design helix; c 24.8 83 0.0028 19.4 3.3 19 296-314 6-24 (27)
352 2f23_A Anti-cleavage anti-GREA 24.8 2.1E+02 0.0071 23.8 7.1 26 291-316 44-72 (156)
353 4b4t_J 26S protease regulatory 24.4 82 0.0028 30.7 5.0 16 256-271 26-41 (405)
354 2xzr_A Immunoglobulin-binding 24.4 2.8E+02 0.0097 22.4 12.2 69 237-305 34-105 (114)
355 3vp9_A General transcriptional 24.0 2.7E+02 0.0092 22.0 7.1 29 258-286 39-67 (92)
356 2ve7_A Kinetochore protein HEC 23.9 1.5E+02 0.005 27.7 6.5 28 255-282 185-212 (315)
357 3oa7_A Head morphogenesis prot 23.6 1.5E+02 0.0051 26.7 6.1 40 271-310 32-71 (206)
358 3f1i_H Hepatocyte growth facto 23.4 2.6E+02 0.009 22.4 6.9 40 272-311 37-76 (98)
359 1cii_A Colicin IA; bacteriocin 23.3 6.1E+02 0.021 25.9 11.7 53 254-306 362-414 (602)
360 1nfn_A Apolipoprotein E3; lipi 23.2 1.4E+02 0.0047 25.9 5.8 54 254-307 105-160 (191)
361 4a3a_A Amphiphysin; structural 23.2 3.9E+02 0.013 23.6 9.8 17 265-281 179-195 (243)
362 4g63_A Cytosolic IMP-GMP speci 23.2 2E+02 0.0068 28.7 7.6 26 291-316 376-401 (470)
363 4gif_A Polycystic kidney disea 23.2 1.9E+02 0.0066 20.1 5.8 25 287-311 18-42 (45)
364 3gp4_A Transcriptional regulat 22.9 2.9E+02 0.01 22.4 7.6 12 258-269 91-102 (142)
365 1zxa_A CGMP-dependent protein 22.9 1.2E+02 0.0041 22.7 4.6 22 292-313 34-55 (67)
366 1fxk_A Prefoldin; archaeal pro 22.9 2.5E+02 0.0084 21.2 6.7 36 272-307 68-103 (107)
367 3mud_A DNA repair protein XRCC 22.8 3.2E+02 0.011 23.9 8.1 33 246-278 133-165 (175)
368 1grj_A GREA protein; transcrip 22.5 2.7E+02 0.0092 23.2 7.4 53 264-316 11-72 (158)
369 1s94_A S-syntaxin; three helix 22.4 2.1E+02 0.0073 23.8 6.8 17 293-309 122-138 (180)
370 2aze_B Transcription factor E2 22.4 1.5E+02 0.005 23.7 5.4 34 257-290 8-41 (106)
371 2aze_B Transcription factor E2 22.2 2.4E+02 0.0082 22.4 6.6 13 295-307 25-37 (106)
372 3iv1_A Tumor susceptibility ge 22.1 2.7E+02 0.0092 21.4 10.5 54 251-304 21-74 (78)
373 2i1j_A Moesin; FERM, coiled-co 22.1 52 0.0018 33.3 3.2 11 232-242 311-321 (575)
374 2l5g_B Putative uncharacterize 21.8 1.7E+02 0.0059 20.1 4.8 31 259-289 6-36 (42)
375 1vcs_A Vesicle transport throu 21.7 1.9E+02 0.0066 22.5 5.9 57 253-309 36-93 (102)
376 4b6x_A AVRRPS4, avirulence pro 21.6 2.9E+02 0.01 21.6 7.4 20 296-315 68-87 (90)
377 1qvr_A CLPB protein; coiled co 21.3 6.2E+02 0.021 26.1 11.3 17 254-270 400-416 (854)
378 2w6a_A ARF GTPase-activating p 21.1 2.6E+02 0.0087 20.7 8.4 12 268-279 26-37 (63)
379 3hhm_B NISH2 P85alpha; PI3KCA, 21.0 4.8E+02 0.017 24.9 9.7 31 280-310 223-253 (373)
380 1fxk_C Protein (prefoldin); ar 21.0 2.5E+02 0.0087 22.2 6.7 42 263-304 2-43 (133)
381 3qfl_A MLA10; coiled-coil, (CC 20.6 3.1E+02 0.011 21.4 8.0 58 257-316 21-78 (115)
382 2pnv_A Small conductance calci 20.0 1.4E+02 0.0047 20.5 4.0 12 298-309 24-35 (43)
No 1
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=99.52 E-value=1.3e-14 Score=106.56 Aligned_cols=52 Identities=35% Similarity=0.604 Sum_probs=49.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 234 KRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKY 285 (318)
Q Consensus 234 KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~ 285 (318)
|+.+||++||+||++||.||++|+++||.+|..|+.||..|..++..|.+.|
T Consensus 1 kr~rR~~~NResA~rSR~RKk~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 1 KREVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKALKDLY 52 (55)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred ChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6889999999999999999999999999999999999999999999887665
No 2
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=99.29 E-value=1.3e-11 Score=92.52 Aligned_cols=55 Identities=24% Similarity=0.390 Sum_probs=48.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 233 DKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDE 287 (318)
Q Consensus 233 ~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~ 287 (318)
+||.+|+++||++|++||.||++++.+|+.+|..|+.+|..|..++..|..++..
T Consensus 1 Ekr~rrrerNR~AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~ 55 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEK 55 (63)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3799999999999999999999999999999999999999998888765554444
No 3
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=99.22 E-value=4.2e-11 Score=88.92 Aligned_cols=52 Identities=27% Similarity=0.392 Sum_probs=46.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 234 KRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKY 285 (318)
Q Consensus 234 KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~ 285 (318)
||.+|+++||++|++||.||++|+.+|+.+|..|+.+|..|..++..|..++
T Consensus 1 kR~~r~erNr~AA~k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~ 52 (61)
T 1t2k_D 1 KRRKFLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEV 52 (61)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6889999999999999999999999999999999999999988887744443
No 4
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=99.19 E-value=3e-11 Score=90.84 Aligned_cols=47 Identities=28% Similarity=0.388 Sum_probs=41.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 240 LSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYD 286 (318)
Q Consensus 240 lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~ 286 (318)
.+||+||+|||.||++|+.+|+.+|..|+.+|..|..++..|++++.
T Consensus 15 ~rNreAArrsR~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 15 ARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45999999999999999999999999999999999988888776553
No 5
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=99.13 E-value=1.3e-10 Score=86.68 Aligned_cols=52 Identities=29% Similarity=0.429 Sum_probs=46.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 234 KRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKY 285 (318)
Q Consensus 234 KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~ 285 (318)
|+.+|..+||++|++||.||++++.+|+.+|..|+.+|..|..++..|..++
T Consensus 1 K~errr~rNr~AA~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~ 52 (62)
T 1jnm_A 1 KAERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQV 52 (62)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678889999999999999999999999999999999999988887754443
No 6
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=99.00 E-value=1.2e-09 Score=84.00 Aligned_cols=60 Identities=37% Similarity=0.421 Sum_probs=47.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 236 ARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRIL 295 (318)
Q Consensus 236 ~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~L 295 (318)
.||+..||.++|..|.||++||.+||.+|..|+.++..|..++..|..++..|..||..|
T Consensus 10 ~kR~~qNR~AQRafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~l 69 (70)
T 1gd2_E 10 SKRKAQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRIL 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 588899999999999999999999999999999988876555555555555555444443
No 7
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=98.91 E-value=3.8e-09 Score=79.19 Aligned_cols=50 Identities=22% Similarity=0.386 Sum_probs=40.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 234 KRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQ 283 (318)
Q Consensus 234 KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~q 283 (318)
|+.+++.+||.+|+|+|.||++++.+|+.++..|+.+|..|..++..|..
T Consensus 2 k~~rKr~rNr~AA~R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~ 51 (63)
T 1ci6_A 2 KKLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERADSLAK 51 (63)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67889999999999999999999999999999999999999888876443
No 8
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=98.60 E-value=2.4e-07 Score=73.82 Aligned_cols=51 Identities=24% Similarity=0.260 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 232 DDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVN 282 (318)
Q Consensus 232 e~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~ 282 (318)
+.+-..|..+|.++|+|||.++++...+++.++..|+.||..|..++..|.
T Consensus 13 d~~Y~~rR~rNN~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~ 63 (87)
T 1hjb_A 13 SDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLS 63 (87)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555677999999999999999999999999999999999998887633
No 9
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=98.52 E-value=5.3e-07 Score=70.49 Aligned_cols=54 Identities=22% Similarity=0.262 Sum_probs=44.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 233 DKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYD 286 (318)
Q Consensus 233 ~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~ 286 (318)
.+-..|..+|.++|+|||.++++...+++.++..|+.||..|..++..|..++.
T Consensus 14 ~~Y~~rR~rNN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~ 67 (78)
T 1gu4_A 14 DEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELS 67 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455679999999999999999999999999999999988888776444433
No 10
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=98.50 E-value=3.6e-09 Score=87.28 Aligned_cols=71 Identities=30% Similarity=0.386 Sum_probs=47.6
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 231 VDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFI 310 (318)
Q Consensus 231 ~e~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e 310 (318)
.+.|.+||.++||.+|+.||.||.++..+||.++..|..+...| ..||..|+.++..|+.++..|.
T Consensus 34 ~~lK~~RR~lKNR~yAq~CR~rk~~~~~~LE~e~~~L~~e~e~L--------------~~En~~l~~E~~~lk~k~e~L~ 99 (107)
T 3a5t_A 34 IQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKL--------------ASENASMKLELDALRSKYEALQ 99 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSTTTTT--------------TSTTSHHHHTTTSSSSCC----
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 46799999999999999999999999999998776665555444 4455556666666666655555
Q ss_pred Hhhhh
Q 021065 311 EIFLG 315 (318)
Q Consensus 311 ~~v~~ 315 (318)
..+..
T Consensus 100 ~~a~s 104 (107)
T 3a5t_A 100 NFART 104 (107)
T ss_dssp -----
T ss_pred HHHHH
Confidence 44433
No 11
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=98.22 E-value=7.7e-06 Score=65.57 Aligned_cols=52 Identities=25% Similarity=0.338 Sum_probs=43.3
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 231 VDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVN 282 (318)
Q Consensus 231 ~e~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~ 282 (318)
...|..||.++||.+|+-+|.||.....+||.++..|..+...|..++..+.
T Consensus 24 ~~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~~ 75 (90)
T 2wt7_B 24 IRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLA 75 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688999999999999999999999999999888888777776665555433
No 12
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=97.24 E-value=0.00074 Score=46.98 Aligned_cols=39 Identities=28% Similarity=0.371 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 254 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADI 299 (318)
Q Consensus 254 k~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael 299 (318)
|+|+.+||.++..|+..|++|..++.. |..||..||+-+
T Consensus 2 KaYl~eLE~r~k~le~~naeLEervst-------Lq~EN~mLRqvl 40 (42)
T 2oqq_A 2 SAYLSELENRVKDLENKNSELEERLST-------LQNENQMLRHIL 40 (42)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhHHHHHHHh
Confidence 589999999999999999888777765 778898888754
No 13
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=96.08 E-value=0.034 Score=43.68 Aligned_cols=51 Identities=18% Similarity=0.281 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 259 ELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMF 309 (318)
Q Consensus 259 eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~ 309 (318)
-|.-+|+.|+.+|..|..++..++.....+..+|..|+.+....+.+|..+
T Consensus 24 lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~L 74 (81)
T 2jee_A 24 LLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQAL 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555556777777777777766666544
No 14
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=96.03 E-value=0.045 Score=46.48 Aligned_cols=61 Identities=16% Similarity=0.144 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021065 253 KQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIF 313 (318)
Q Consensus 253 Kk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v 313 (318)
.+...+.|+.++..+..|...|+.++..++.++..+..++..|+.++..|+.++..+|...
T Consensus 73 ~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~ 133 (138)
T 3hnw_A 73 AKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETEL 133 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455778888888888888888888888888888888888888888888888888887654
No 15
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=95.78 E-value=0.062 Score=42.22 Aligned_cols=64 Identities=14% Similarity=0.144 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhhhhccC
Q 021065 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRI-------LKADIETLRAKLYMFIEIFLGENG 318 (318)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~-------Lrael~~Lr~kl~~~e~~v~~~~~ 318 (318)
.-++.||.+|..+-....-|.-++..|+++...+..+|.. |..++..|+.....-.+.|..+.|
T Consensus 6 ElleqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLg 76 (81)
T 2jee_A 6 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLG 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3477889998888888888888888888888888887777 555666666666666666665543
No 16
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=95.76 E-value=0.052 Score=42.84 Aligned_cols=49 Identities=12% Similarity=0.138 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC
Q 021065 266 QLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFLGENG 318 (318)
Q Consensus 266 ~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~~~~ 318 (318)
.--.||..|..++..+..++..+..+|..|+ +|-.+++.+-++|+++||
T Consensus 35 eaL~EN~~Lh~~ie~~~eEi~~Lk~en~~L~----elA~~~q~la~~i~~L~~ 83 (83)
T 1wlq_A 35 EALKENEKLHKEIEQKDSEIARLRKENKDLA----EVAEHVQYMAEVIERLSN 83 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH----HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcC
Confidence 3445888999999998888999999998776 488889999999999998
No 17
>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA), transcription/DNA complex; HET: DNA LDA; 2.50A {Caenorhabditis elegans} SCOP: a.37.1.1
Probab=95.67 E-value=0.0053 Score=49.20 Aligned_cols=32 Identities=22% Similarity=0.309 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 021065 231 VDDKRARRMLSNRESARRSRRRKQAHLNELET 262 (318)
Q Consensus 231 ~e~KR~RR~lsNRESArRSR~RKk~~l~eLE~ 262 (318)
...|..||..+||.+|+++|+||...+..|+.
T Consensus 59 ~~ir~~RRR~KNr~AA~~CRkrK~~~~d~l~~ 90 (92)
T 1skn_P 59 QLIRKIRRRGKNKVAARTCRQRRTDRHDKMSH 90 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTC--
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhc
Confidence 35788999999999999999999998887764
No 18
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=95.13 E-value=0.081 Score=38.28 Aligned_cols=48 Identities=21% Similarity=0.292 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (318)
Q Consensus 257 l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~ 304 (318)
.+.|-.||+.|+.||..|++++.+-..++..|++|-.-+|.=+..|..
T Consensus 5 YdQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~lq~ 52 (54)
T 1deb_A 5 YDQLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQLQG 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHcc
Confidence 467889999999999999999999999999999888777766655543
No 19
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=94.87 E-value=0.072 Score=43.32 Aligned_cols=30 Identities=17% Similarity=0.205 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKY 285 (318)
Q Consensus 256 ~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~ 285 (318)
.+..|..+|+.|+.||..|+.++..|.-++
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~L 42 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQL 42 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777788888888877777766553
No 20
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=94.26 E-value=0.3 Score=41.41 Aligned_cols=60 Identities=10% Similarity=0.139 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 021065 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFLGE 316 (318)
Q Consensus 257 l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~~ 316 (318)
+-.+..++..|+.+...+.+++..|..++..+..++..++.++..|+.++..++.-++++
T Consensus 70 l~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~l 129 (138)
T 3hnw_A 70 YFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKL 129 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666777777777777777777777777777777777777777777777766653
No 21
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=94.12 E-value=0.21 Score=37.26 Aligned_cols=41 Identities=24% Similarity=0.258 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKA 297 (318)
Q Consensus 257 l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lra 297 (318)
|..-|.+|.+|..-|..|..++..++.+++.|..||..||.
T Consensus 22 LaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr~ 62 (63)
T 2w6a_A 22 LATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLRQ 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhcc
Confidence 55668899999999999999999999999999999999874
No 22
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=93.54 E-value=1.9 Score=34.44 Aligned_cols=16 Identities=13% Similarity=0.436 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 021065 296 KADIETLRAKLYMFIE 311 (318)
Q Consensus 296 rael~~Lr~kl~~~e~ 311 (318)
.+++..|..||..+|+
T Consensus 85 E~ev~~L~RriqllEE 100 (101)
T 3u1c_A 85 ESEVASLNRRIQLVEE 100 (101)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcc
Confidence 4477778888877775
No 23
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=93.35 E-value=0.23 Score=36.67 Aligned_cols=41 Identities=12% Similarity=0.159 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 021065 275 LKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFLG 315 (318)
Q Consensus 275 ~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~ 315 (318)
..+...|..++..|..+|..|+.++..|+..+..+..+|.-
T Consensus 22 k~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~e 62 (63)
T 1ci6_A 22 RAEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLIEE 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45566777788888999999999999999999998888754
No 24
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=93.18 E-value=0.84 Score=36.04 Aligned_cols=34 Identities=24% Similarity=0.299 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 021065 282 NQKYDESAVNNRILKADIETLRAKLYMFIEIFLG 315 (318)
Q Consensus 282 ~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~ 315 (318)
.+++..|+.||..|+.+|..|...+..+..++..
T Consensus 42 ~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~ 75 (87)
T 1hjb_A 42 QHKVLELTAENERLQKKVEQLSRELSTLRNLFKQ 75 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555555554443
No 25
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=93.07 E-value=0.5 Score=38.45 Aligned_cols=47 Identities=21% Similarity=0.239 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 257 LNELETQAGQLRAEHSSLLK-------GLTDVNQKYDESAVNNRILKADIETLR 303 (318)
Q Consensus 257 l~eLE~qV~~L~~EN~~L~~-------~l~~L~qk~~~l~~EN~~Lrael~~Lr 303 (318)
.-+||.+++.|+.||..|+. ++..|..++..|..||..|+.+-+-.+
T Consensus 39 Yl~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~e~~~~~ 92 (104)
T 3s9g_A 39 YLELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLLTENELHR 92 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34577777777777777666 444555555555555555555544433
No 26
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=92.99 E-value=0.65 Score=40.30 Aligned_cols=55 Identities=13% Similarity=-0.072 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIE 311 (318)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~ 311 (318)
..+.+-..-+..|+.|...|..++..+..++..+..||..|-.+.. ..+-+.++.
T Consensus 89 eel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM--~rk~qEAe~ 143 (152)
T 3a7p_A 89 EVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWL--KKTEKETEA 143 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 3334444556777778888888888888888888888877755543 333344443
No 27
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=92.99 E-value=0.39 Score=43.49 Aligned_cols=48 Identities=17% Similarity=0.203 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC
Q 021065 267 LRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFLGENG 318 (318)
Q Consensus 267 L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~~~~ 318 (318)
--.||..|..++..+..++..+..+|..|+. |-..++.+-++|.+++|
T Consensus 113 aLeEN~~Lh~~ie~l~eEi~~LkeEn~eLke----Lae~~q~la~vi~~l~~ 160 (209)
T 2wvr_A 113 ALKENEKLHKEIEQKDNEIARLKKENKELAE----VAEHVQYMAELIERLNG 160 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhc
Confidence 3458889999999999999999999988876 44555666666666665
No 28
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=92.99 E-value=0.86 Score=35.42 Aligned_cols=56 Identities=20% Similarity=0.249 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021065 259 ELETQAGQLRAEHSSLLKGL-------TDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFL 314 (318)
Q Consensus 259 eLE~qV~~L~~EN~~L~~~l-------~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~ 314 (318)
.+-.+|+.|-.||.+|...- .+|..++..|..|+..|+.++..++.-...++..|+
T Consensus 6 gmgkevEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~ 68 (77)
T 2w83_C 6 FMGREVENLILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNR 68 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777777766443 355566777777777777777666655554444443
No 29
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=91.88 E-value=0.47 Score=34.50 Aligned_cols=38 Identities=13% Similarity=0.253 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021065 276 KGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIF 313 (318)
Q Consensus 276 ~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v 313 (318)
..+..|..++..+..+|..|+.++..|+..+..+..+|
T Consensus 22 ~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 22 VWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667777888888899999999999999888887765
No 30
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=91.77 E-value=1.7 Score=47.51 Aligned_cols=31 Identities=23% Similarity=0.227 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 281 VNQKYDESAVNNRILKADIETLRAKLYMFIE 311 (318)
Q Consensus 281 L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~ 311 (318)
|+++...|..||..|++++.+|...+...++
T Consensus 1021 L~~kv~~L~~e~~~L~qq~~~l~~~~~~~~~ 1051 (1080)
T 2dfs_A 1021 TEQLVSELKEQNTLLKTEKEELNRRIHDQAK 1051 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345556777888888888888866665554
No 31
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=91.65 E-value=0.52 Score=34.64 Aligned_cols=39 Identities=13% Similarity=0.080 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021065 276 KGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFL 314 (318)
Q Consensus 276 ~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~ 314 (318)
..+..|..++..|..+|..|+.++..|+..+..+..++.
T Consensus 23 ~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l~ 61 (63)
T 2wt7_A 23 ELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFILA 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888889999999999999999999999988875
No 32
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=91.59 E-value=4 Score=32.30 Aligned_cols=15 Identities=20% Similarity=0.468 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHH
Q 021065 297 ADIETLRAKLYMFIE 311 (318)
Q Consensus 297 ael~~Lr~kl~~~e~ 311 (318)
+++..|..||..+|+
T Consensus 86 ~evasLnRriqllEE 100 (101)
T 3u59_A 86 AEVASLNRRIQLVEE 100 (101)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcc
Confidence 356666666666654
No 33
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=91.59 E-value=1.5 Score=33.87 Aligned_cols=37 Identities=22% Similarity=0.287 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 021065 279 TDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFLG 315 (318)
Q Consensus 279 ~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~ 315 (318)
..+.+++..|..||..|+.+|..|+..|..|..++..
T Consensus 39 ~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll~q 75 (78)
T 1gu4_A 39 LETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQ 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566667777777777777777777777666644
No 34
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=91.46 E-value=2.2 Score=33.21 Aligned_cols=64 Identities=14% Similarity=0.169 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021065 251 RRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFL 314 (318)
Q Consensus 251 ~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~ 314 (318)
+|=+..+..-..+++.|+.-...|..--+.|..-+..+..|-..|...+..|+.|...+++.+.
T Consensus 14 rrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~~~l~ 77 (78)
T 3iv1_A 14 WRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELSSALE 77 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445667777788888888888888887888888888999999999999999999999988764
No 35
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=90.42 E-value=1.1 Score=31.23 Aligned_cols=43 Identities=26% Similarity=0.366 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKL 306 (318)
Q Consensus 257 l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl 306 (318)
+..||.+|..|+.||..|+++.-.-..-+. -|..++..||.|+
T Consensus 5 vaqlenevaslenenetlkkknlhkkdlia-------ylekeianlrkki 47 (49)
T 3he5_A 5 VAQLENEVASLENENETLKKKNLHKKDLIA-------YLEKEIANLRKKI 47 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccHHHHHhcccHHHHHH-------HHHHHHHHHHHHh
Confidence 567889999999999988877532222222 3455666666655
No 36
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=90.37 E-value=1.8 Score=34.92 Aligned_cols=50 Identities=20% Similarity=0.259 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKL 306 (318)
Q Consensus 257 l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl 306 (318)
+..|+.++.....+...|..++..-+.+...++.++..+..+++.|.+.|
T Consensus 14 l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasL 63 (97)
T 2eqb_B 14 YNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASL 63 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444555555555555554443
No 37
>3m0d_C TNF receptor-associated factor 1; trimeric helix coiled coiled, acetylation, alternative splic apoptosis, coiled coil, cytoplasm; 2.80A {Homo sapiens}
Probab=90.19 E-value=3.6 Score=30.36 Aligned_cols=62 Identities=16% Similarity=0.154 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021065 253 KQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFL 314 (318)
Q Consensus 253 Kk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~ 314 (318)
|..-+.+||.++..++.-...+..++..+.-.+..+..++..=+..++.|..|+..++.+++
T Consensus 4 ~~~~~~~le~kl~~lEnIv~~l~~eve~~~~~lea~~rq~~~d~~~Ie~Le~kv~~l~~~l~ 65 (65)
T 3m0d_C 4 KEKLLAELEGKLRVFENIVAVLNKEVEASHLALATSIHQSQLDRERILSLEQRVVELQQTLA 65 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhC
Confidence 34567778888887777666666666666666666655555557788999999999988763
No 38
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=90.18 E-value=3 Score=41.02 Aligned_cols=24 Identities=13% Similarity=0.058 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 021065 290 VNNRILKADIETLRAKLYMFIEIF 313 (318)
Q Consensus 290 ~EN~~Lrael~~Lr~kl~~~e~~v 313 (318)
..-.+|++++..++++++.+++-+
T Consensus 558 ~~~~~l~~e~~~~~~~~~~l~~~~ 581 (597)
T 3oja_B 558 AKQAELRQETSLKRQKVKQLEAKK 581 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444555555555555555443
No 39
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=90.05 E-value=1.5 Score=34.16 Aligned_cols=45 Identities=13% Similarity=0.070 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 267 LRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIE 311 (318)
Q Consensus 267 L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~ 311 (318)
--.||..|..++..+..++..+..||+.|+.=+...+.-+.++++
T Consensus 32 aL~EN~~Lh~~ie~~~eEi~~LkeEN~~L~el~~~~~~laevl~~ 76 (79)
T 2zxx_A 32 ALKENEKLHKEIEQKDSEIARLRKENKDLAEVAEHVQYMAEVIER 76 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345899999999999999999999999987655554444444433
No 40
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=90.01 E-value=0.35 Score=32.02 Aligned_cols=27 Identities=15% Similarity=0.313 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 257 LNELETQAGQLRAEHSSLLKGLTDVNQ 283 (318)
Q Consensus 257 l~eLE~qV~~L~~EN~~L~~~l~~L~q 283 (318)
+..||.+|+.|-.+|..|..++..|+.
T Consensus 2 M~QLE~kVEeLl~~n~~Le~EV~RLk~ 28 (33)
T 3m48_A 2 MAQLEAKVEELLSKNWNLENEVARLKK 28 (33)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 567888888888888888777776553
No 41
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=89.88 E-value=0.55 Score=35.70 Aligned_cols=36 Identities=14% Similarity=0.290 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 273 SLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYM 308 (318)
Q Consensus 273 ~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~ 308 (318)
.|..++..|......+..||..|+.++..|+.++..
T Consensus 33 ~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~ 68 (70)
T 1gd2_E 33 ALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRI 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555556778888888888888877764
No 42
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=89.50 E-value=2.2 Score=37.48 Aligned_cols=55 Identities=22% Similarity=0.204 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 244 ESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIE 300 (318)
Q Consensus 244 ESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~ 300 (318)
|+=---|.||++ .+|...+..++..+..|..++..|......|..+...|.+++.
T Consensus 25 EsE~~~rlkK~~--tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~ 79 (168)
T 3o0z_A 25 ESDTAVRLRKSH--TEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILE 79 (168)
T ss_dssp HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555654 5555555555555555555555555554444444444444433
No 43
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=89.23 E-value=2.1 Score=32.77 Aligned_cols=53 Identities=13% Similarity=0.338 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Q 021065 259 ELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIE----TLRAKLYMFIE 311 (318)
Q Consensus 259 eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~----~Lr~kl~~~e~ 311 (318)
++..+++.++.+|+.|..++..+.+.+..-..+-..++.++. .|--||..+.+
T Consensus 4 ~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~e 60 (72)
T 3cve_A 4 NSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTE 60 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 566778888888888888888888887777666665555544 34444444443
No 44
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=89.16 E-value=0.52 Score=31.34 Aligned_cols=27 Identities=15% Similarity=0.193 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 256 HLNELETQAGQLRAEHSSLLKGLTDVN 282 (318)
Q Consensus 256 ~l~eLE~qV~~L~~EN~~L~~~l~~L~ 282 (318)
++..||.+|+.|-.+|+.|..++..|+
T Consensus 2 RMnQLE~kVEeLl~~n~~Le~eV~rLk 28 (34)
T 2oxj_A 2 RMXQLEXKVXELLXKNXHLEXEVXRLK 28 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 467788888888877777777766554
No 45
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=89.16 E-value=8.9 Score=33.19 Aligned_cols=12 Identities=17% Similarity=0.111 Sum_probs=4.2
Q ss_pred HHHHHHHHHHHH
Q 021065 270 EHSSLLKGLTDV 281 (318)
Q Consensus 270 EN~~L~~~l~~L 281 (318)
+...|..++.++
T Consensus 76 El~~l~~ki~dL 87 (152)
T 3a7p_A 76 ELKSKEQEIRRL 87 (152)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 46
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=89.13 E-value=0.49 Score=30.23 Aligned_cols=25 Identities=36% Similarity=0.412 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 282 NQKYDESAVNNRILKADIETLRAKL 306 (318)
Q Consensus 282 ~qk~~~l~~EN~~Lrael~~Lr~kl 306 (318)
+.-+..++.||..|++.+++|-+|+
T Consensus 5 nallasleaenkqlkakveellakv 29 (31)
T 1p9i_A 5 NALLASLEAENKQLKAKVEELLAKV 29 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445678888999999999888876
No 47
>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y
Probab=89.13 E-value=2.2 Score=31.37 Aligned_cols=37 Identities=27% Similarity=0.302 Sum_probs=27.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 239 MLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLL 275 (318)
Q Consensus 239 ~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~ 275 (318)
.-+||.++|++|.|=+..|+...+-...-..||..|+
T Consensus 6 ryknr~asrk~rakfkn~lqh~r~vaaaks~en~rlr 42 (63)
T 2c9l_Y 6 RYKNRVAARKSRAKFKQLLQHYREVAAAKSSENDRLR 42 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHH
Confidence 3579999999999988887777665555555666554
No 48
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=89.11 E-value=2.1 Score=43.66 Aligned_cols=42 Identities=10% Similarity=0.053 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021065 273 SLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFL 314 (318)
Q Consensus 273 ~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~ 314 (318)
.|++++..|+.+++.....-++|+..|++++.+++.||--|.
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDId 155 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDID 155 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888888888877777788999999999999999997663
No 49
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=88.93 E-value=2.7 Score=37.55 Aligned_cols=53 Identities=23% Similarity=0.248 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMF 309 (318)
Q Consensus 257 l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~ 309 (318)
+..|+.++..|+..+..|..++..|.+....++...|.+..-++.+..|+..+
T Consensus 90 ~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~a 142 (189)
T 2v71_A 90 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQA 142 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHH
Confidence 55556666666666666666666666666666666666666666666666554
No 50
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=88.87 E-value=3.2 Score=40.80 Aligned_cols=52 Identities=13% Similarity=0.114 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMF 309 (318)
Q Consensus 258 ~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~ 309 (318)
..++.+.+.++.+++.+.++++..++++..+..|...|+.+++..+.++..+
T Consensus 512 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l 563 (597)
T 3oja_B 512 THLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAEL 563 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHH
Confidence 3444444444555555555555555555555555555544444444444433
No 51
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=88.83 E-value=0.76 Score=30.90 Aligned_cols=30 Identities=13% Similarity=0.295 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKY 285 (318)
Q Consensus 256 ~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~ 285 (318)
++..||.+|+.|..+|+.|..++..|+..+
T Consensus 2 RMnQLE~KVEeLl~~~~~Le~eV~RLk~ll 31 (36)
T 1kd8_B 2 KVKQLKAKVEELKSKLWHLKNKVARLKKKN 31 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 467788888888888888877777665443
No 52
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=88.64 E-value=5.6 Score=31.95 Aligned_cols=77 Identities=16% Similarity=0.099 Sum_probs=60.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 021065 240 LSNRESARRSRRRKQAHLNELETQAGQLR---AEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFLGE 316 (318)
Q Consensus 240 lsNRESArRSR~RKk~~l~eLE~qV~~L~---~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~~ 316 (318)
..|-.+|-..=..|+..+++|...+.+++ ..+.-|..++......|..-...-..|..+.+.|...|..+..-+.++
T Consensus 8 ~~~L~~aEeaL~~kq~~id~lke~~~q~~~~~E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~lq~q~~~L 87 (94)
T 3jsv_C 8 RQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNKL 87 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 34556777777789999999999888888 677779999999999999888888888888888888887777665554
No 53
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=88.59 E-value=0.35 Score=44.98 Aligned_cols=39 Identities=23% Similarity=0.295 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRIL 295 (318)
Q Consensus 257 l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~L 295 (318)
+.+|+.++..|...|..|...+..+++++..|..|+..|
T Consensus 56 l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL 94 (251)
T 3m9b_A 56 IHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 94 (251)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444555555555555555555554444444443333333
No 54
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=88.55 E-value=2.3 Score=35.51 Aligned_cols=50 Identities=16% Similarity=0.269 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLY 307 (318)
Q Consensus 258 ~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~ 307 (318)
..|+.+..+-+...++|..+|..|+++++.+..|-..||.+.+.|..++.
T Consensus 60 ~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~ 109 (121)
T 3mq7_A 60 ASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRIA 109 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHhh
Confidence 34444444444556667777777777777777777777777777776654
No 55
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=88.51 E-value=2.3 Score=29.96 Aligned_cols=46 Identities=13% Similarity=0.127 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 021065 270 EHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFLG 315 (318)
Q Consensus 270 EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~ 315 (318)
.|.-|++++..|......++.+...|..-+..||..+..+|..|..
T Consensus 4 rnaylrkkiarlkkdnlqlerdeqnlekiianlrdeiarlenevas 49 (52)
T 3he5_B 4 RNAYLRKKIARLKKDNLQLERDEQNLEKIIANLRDEIARLENEVAS 49 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred hhHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHhh
Confidence 4566677777777666777777777888888888888888887764
No 56
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=88.43 E-value=9.2 Score=34.06 Aligned_cols=54 Identities=15% Similarity=-0.013 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021065 259 ELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEI 312 (318)
Q Consensus 259 eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~ 312 (318)
+...++..|+.+...|+.....+..++..|+..|.-|......+...+..+|..
T Consensus 85 e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~k 138 (189)
T 2v71_A 85 QSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQR 138 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHH
Confidence 334456677777777777777777777777777777766666666655555543
No 57
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=88.42 E-value=1.5 Score=33.84 Aligned_cols=49 Identities=24% Similarity=0.126 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFI 310 (318)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e 310 (318)
++|.+||.++..++.-...|...+..-.+++.. |+.++..|..|++.++
T Consensus 14 ~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~-------L~~ql~~L~~rl~~~~ 62 (78)
T 3efg_A 14 ARLVELETRLSFQEQALTELSEALADARLTGAR-------NAELIRHLLEDLGKVR 62 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhh
Confidence 355666666666666666665555554444444 4555555555554444
No 58
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=88.41 E-value=0.55 Score=34.27 Aligned_cols=38 Identities=13% Similarity=0.195 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021065 276 KGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIF 313 (318)
Q Consensus 276 ~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v 313 (318)
..+..|..++..|..+|..|+.++..|+..+..|..+|
T Consensus 22 ~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~l 59 (62)
T 1jnm_A 22 ERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQKV 59 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777788888888888888888888887776655
No 59
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=88.27 E-value=7.2 Score=34.24 Aligned_cols=70 Identities=13% Similarity=0.153 Sum_probs=41.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 234 KRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFI 310 (318)
Q Consensus 234 KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e 310 (318)
|-...+..-=+.=|+.|.+-.+.+.+|+.++..|+.|...++.. +..+..+|+.|...+..|......+|
T Consensus 69 ke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~-------~~k~~~e~r~L~Ekl~~lEKe~a~~e 138 (168)
T 3o0z_A 69 KDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHN-------LEKVEGERKEAQDMLNHSEKEKNNLE 138 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33344444455556666666666667776666666555555444 44566777777666666665544444
No 60
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=88.09 E-value=2.5 Score=32.28 Aligned_cols=59 Identities=10% Similarity=0.075 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021065 254 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEI 312 (318)
Q Consensus 254 k~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~ 312 (318)
...++.++.++...+..+..+..++..|+.++..++.+=..+..++.....+|..++..
T Consensus 19 ~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeeaek~ 77 (81)
T 1ic2_A 19 LDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELADKK 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666666666666666677777777777777777777777777777776666543
No 61
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=87.82 E-value=4.4 Score=31.95 Aligned_cols=30 Identities=7% Similarity=0.280 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 278 LTDVNQKYDESAVNNRILKADIETLRAKLY 307 (318)
Q Consensus 278 l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~ 307 (318)
+..|+.++..+..+|..|..++..|+..+.
T Consensus 58 i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~ 87 (93)
T 3s4r_A 58 MRELRRQVDQLTNDKARVEVERDNLAEDIM 87 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555555544443
No 62
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=87.74 E-value=10 Score=31.10 Aligned_cols=55 Identities=24% Similarity=0.276 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFI 310 (318)
Q Consensus 256 ~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e 310 (318)
.+..|+.++..|+..|..|...+.+|.+....++...|..-.-++.+..|+..+=
T Consensus 36 ~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n~ai 90 (111)
T 2v66_B 36 QVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLNQAI 90 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3667888888888888888888888888888888888888888888888876653
No 63
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=87.64 E-value=1.4 Score=34.30 Aligned_cols=44 Identities=14% Similarity=0.286 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIET 301 (318)
Q Consensus 258 ~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~ 301 (318)
+++..+++.++.+|+.|..++..+.+.+..-..+-..++.++..
T Consensus 9 e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~ 52 (79)
T 3cvf_A 9 EETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGR 52 (79)
T ss_dssp -CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777777777777777777777666555555554433
No 64
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=87.63 E-value=0.24 Score=35.39 Aligned_cols=34 Identities=15% Similarity=0.076 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 021065 282 NQKYDESAVNNRILKADIETLRAKLYMFIEIFLG 315 (318)
Q Consensus 282 ~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~ 315 (318)
..-...++.+|..|..++..|..-+..+|.-|.|
T Consensus 23 enivarlendnanlekdianlekdianlerdvar 56 (56)
T 3he4_A 23 ENIVARLENDNANLEKDIANLEKDIANLERDVAR 56 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHhcccchHHHHHHHHHHHHHHHHHhhcC
Confidence 3344557788888888888888888888887764
No 65
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=87.12 E-value=2 Score=30.65 Aligned_cols=38 Identities=16% Similarity=0.087 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 261 ETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKAD 298 (318)
Q Consensus 261 E~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrae 298 (318)
+.++..|+.-|..|..+++.|...+..++.|+.+|++=
T Consensus 3 eq~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~L 40 (48)
T 3vmx_A 3 ERQILRLKQINIQLATKIQHLEFSCSEKEQEIERLNKL 40 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 56788899999999999999988888888887777653
No 66
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=86.90 E-value=12 Score=30.84 Aligned_cols=75 Identities=16% Similarity=0.120 Sum_probs=57.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 021065 241 SNRESARRSRRRKQAHLNELETQAGQLRA---EHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFLG 315 (318)
Q Consensus 241 sNRESArRSR~RKk~~l~eLE~qV~~L~~---EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~ 315 (318)
.|=.+|-..=..|+..+++|..++.+++. ...-|..++......|..-...-..|..+.+.|..+|..+..-+.+
T Consensus 31 ~~L~~AEeaL~~Kq~~idelk~ei~q~~~~lE~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q~~~ 108 (110)
T 2v4h_A 31 QQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNK 108 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 34456666777789999999999888888 7777888998888888877777777777777777777776665544
No 67
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=86.70 E-value=6.8 Score=42.81 Aligned_cols=59 Identities=14% Similarity=0.050 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhhh
Q 021065 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESA----VNNRILKADIETLRAKLYMFIEIFL 314 (318)
Q Consensus 256 ~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~----~EN~~Lrael~~Lr~kl~~~e~~v~ 314 (318)
.+..|+.+++.|+.+.+.+.++...+.+++..+. ..-..|+.+...|+..+..+|..|+
T Consensus 985 ~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~qq~~~l~~~~~ 1047 (1080)
T 2dfs_A 985 RVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIH 1047 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444433222 2233345555555555555554443
No 68
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=86.54 E-value=3.5 Score=34.37 Aligned_cols=38 Identities=21% Similarity=0.330 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 263 QAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIE 300 (318)
Q Consensus 263 qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~ 300 (318)
+|+.|+.|+..|..+|.++..++..|..+|..|..++.
T Consensus 72 ~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~ 109 (121)
T 3mq7_A 72 KVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRIA 109 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHhh
Confidence 46666666666666666666666666677766666553
No 69
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=86.46 E-value=4 Score=36.52 Aligned_cols=44 Identities=7% Similarity=0.078 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC
Q 021065 275 LKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFLGENG 318 (318)
Q Consensus 275 ~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~~~~ 318 (318)
..++..|++++..+..+-+.+..++..-+.-+...++++.-+||
T Consensus 40 ~~ei~~L~~ql~sl~~~~~~~~~~~~~~~e~i~i~~DL~e~LTG 83 (190)
T 4emc_A 40 ATEIKQLQKQIDSLNAQVKELKTQTSQQAENSEVIKDLYEYLCN 83 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhHHHHHHHHccC
Confidence 33333333444444443344444444444555566666666665
No 70
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=86.32 E-value=4.9 Score=31.32 Aligned_cols=47 Identities=15% Similarity=0.247 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETL 302 (318)
Q Consensus 256 ~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~L 302 (318)
-+.+|..++..|+.|...|+.+++.+..++..+....+.+-.++..+
T Consensus 21 ~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dLD~R 67 (83)
T 2xdj_A 21 LLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQIDSL 67 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667777777777777777777777777777766666665555433
No 71
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=86.08 E-value=5.3 Score=43.65 Aligned_cols=28 Identities=14% Similarity=0.038 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 284 KYDESAVNNRILKADIETLRAKLYMFIE 311 (318)
Q Consensus 284 k~~~l~~EN~~Lrael~~Lr~kl~~~e~ 311 (318)
++..+..+...|+.++..|..++..+++
T Consensus 914 ~l~~l~~~~~~Le~~l~ele~elee~ee 941 (1184)
T 1i84_S 914 MRVRLAAKKQELEEILHEMEARIEEEEE 941 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444433
No 72
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=86.07 E-value=0.95 Score=30.42 Aligned_cols=29 Identities=14% Similarity=0.308 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 256 HLNELETQAGQLRAEHSSLLKGLTDVNQK 284 (318)
Q Consensus 256 ~l~eLE~qV~~L~~EN~~L~~~l~~L~qk 284 (318)
++..||.+|+.|..+|+.|..++..|+.-
T Consensus 2 RMnQLE~kVEeLl~~~~~Le~EV~RL~~l 30 (36)
T 1kd8_A 2 EVKQLEAEVEEIESEVWHLENEVARLEKE 30 (36)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 46778888888888888887777765543
No 73
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=86.01 E-value=1 Score=29.88 Aligned_cols=27 Identities=4% Similarity=0.062 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 256 HLNELETQAGQLRAEHSSLLKGLTDVN 282 (318)
Q Consensus 256 ~l~eLE~qV~~L~~EN~~L~~~l~~L~ 282 (318)
++..||.+|+.|-.+|..|..++..|+
T Consensus 2 RMnQLEdKVEeLl~~~~~Le~EV~RLk 28 (34)
T 3c3f_A 2 RMXQIEXKLEXILSXLYHXENEXARIX 28 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 467788888888888877777776654
No 74
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=85.72 E-value=6.1 Score=32.48 Aligned_cols=38 Identities=16% Similarity=0.015 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 261 ETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKAD 298 (318)
Q Consensus 261 E~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrae 298 (318)
-..+..|+.+...|+.....+...+..|+..|.-|...
T Consensus 34 ~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~ 71 (111)
T 2v66_B 34 YKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERA 71 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHH
Confidence 34455566666666666666666666666666665433
No 75
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=85.54 E-value=2.2 Score=31.27 Aligned_cols=39 Identities=15% Similarity=0.072 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 260 LETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKAD 298 (318)
Q Consensus 260 LE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrae 298 (318)
-|.++..|+.-|-+|..+++.|..++...+.|+.+|++=
T Consensus 9 se~q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~~L 47 (58)
T 3a2a_A 9 SERQLLRLKQMNVQLAAKIQHLEFSCSEKEQEIERLNKL 47 (58)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778888888888888888888888877777777653
No 76
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=85.52 E-value=4 Score=31.47 Aligned_cols=50 Identities=16% Similarity=0.236 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFI 310 (318)
Q Consensus 258 ~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e 310 (318)
++||.+|..|+.-...|..++..|..+|... ...||++|..|..+|+...
T Consensus 3 ~dlEEKv~~LE~sld~LQTrfARLLaEy~ss---Q~KLKqRit~LE~~~~~~~ 52 (74)
T 3swf_A 3 MGLEEKVTRMESSVDLLQTRFARILAEYESM---QQKLKQRLTKVEKFLKPLI 52 (74)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhcccC
Confidence 4678888888877777777777766655543 4578888888888887644
No 77
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=85.37 E-value=2.6 Score=29.24 Aligned_cols=35 Identities=17% Similarity=0.308 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021065 279 TDVNQKYDESAVNNRILKADIETLRAKLYMFIEIF 313 (318)
Q Consensus 279 ~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v 313 (318)
.+|..+...++..|.+|..++.+|...-.|+..++
T Consensus 6 ~eLE~r~k~le~~naeLEervstLq~EN~mLRqvl 40 (42)
T 2oqq_A 6 SELENRVKDLENKNSELEERLSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 34444444455555555555555555555555444
No 78
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=85.09 E-value=4 Score=29.25 Aligned_cols=26 Identities=31% Similarity=0.496 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 258 NELETQAGQLRAEHSSLLKGLTDVNQ 283 (318)
Q Consensus 258 ~eLE~qV~~L~~EN~~L~~~l~~L~q 283 (318)
.+|..++..|...|..|...+...++
T Consensus 12 ~~l~~~l~~L~~rN~rL~~~L~~AR~ 37 (51)
T 3m91_A 12 HQLEARIDSLAARNSKLMETLKEARQ 37 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555544444333
No 79
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=84.89 E-value=9 Score=31.21 Aligned_cols=81 Identities=16% Similarity=0.264 Sum_probs=43.8
Q ss_pred chHHHHHHHHHHhHHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 230 SVDDKRARRMLSNRESARRSRRRK-Q-AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLY 307 (318)
Q Consensus 230 ~~e~KR~RR~lsNRESArRSR~RK-k-~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~ 307 (318)
..++|=.|-|++| |+-=-.|- . =+++-|...+..++....+|.+++.+..+.+..+......|+.++..|+..|+
T Consensus 6 EvEEKyrKAMVsn---AQLDNEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~ 82 (103)
T 4h22_A 6 EVEEKYKKAMVSN---AQLDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALK 82 (103)
T ss_dssp --CCTHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466777788887 22211111 1 12344445555555555566666666556666666666666666666666665
Q ss_pred HHHHhh
Q 021065 308 MFIEIF 313 (318)
Q Consensus 308 ~~e~~v 313 (318)
.=+++|
T Consensus 83 qRD~LI 88 (103)
T 4h22_A 83 QREEML 88 (103)
T ss_dssp TTTSCC
T ss_pred HHHHHH
Confidence 544443
No 80
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=84.83 E-value=4.1 Score=31.61 Aligned_cols=52 Identities=13% Similarity=0.045 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 021065 265 GQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFLGE 316 (318)
Q Consensus 265 ~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~~ 316 (318)
+.|..-...|..++..|.-+...+..|+..+++-...|+.|++.+|+.++|+
T Consensus 26 NaLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeElkr~ 77 (77)
T 2w83_C 26 NALNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEELRKA 77 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3444455568888888888888889999999999999999999999988874
No 81
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=84.76 E-value=2.4 Score=32.57 Aligned_cols=50 Identities=16% Similarity=0.072 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 021065 259 ELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFLG 315 (318)
Q Consensus 259 eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~ 315 (318)
+|+.++..|+...+-+-..+..|+.-+ .....+|..|+.+|+.+.+.++.
T Consensus 11 ~le~Ri~~LE~klAfqE~tIeeLn~~v-------~~Qq~~Id~L~~ql~~L~~rl~~ 60 (78)
T 3efg_A 11 ELEARLVELETRLSFQEQALTELSEAL-------ADARLTGARNAELIRHLLEDLGK 60 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555554444444433322 22345666777777766666553
No 82
>2kz5_A Transcription factor NF-E2 45 kDa subunit; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=84.75 E-value=0.078 Score=42.41 Aligned_cols=25 Identities=28% Similarity=0.267 Sum_probs=21.7
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHH
Q 021065 231 VDDKRARRMLSNRESARRSRRRKQA 255 (318)
Q Consensus 231 ~e~KR~RR~lsNRESArRSR~RKk~ 255 (318)
.-.|.+||..+||.+|+++|+||..
T Consensus 63 ~lIrdiRRRgKNKvAAqnCRKRKld 87 (91)
T 2kz5_A 63 ALVRDIRRRGKNKVAAQNYRKRKLE 87 (91)
T ss_dssp HHHHHHHHHHHHHHHTTSCCCCCCC
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3568889999999999999999853
No 83
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=84.67 E-value=2.1 Score=38.29 Aligned_cols=48 Identities=19% Similarity=0.255 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFI 310 (318)
Q Consensus 256 ~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e 310 (318)
+|+.-..-|..|..||..|..++.. ...|+..|+.++..|+..+...+
T Consensus 14 ql~~ad~LV~~L~~En~~L~~ql~~-------k~~ei~~L~~ql~sl~~~~~~~~ 61 (190)
T 4emc_A 14 QIDSADLLVANLVNENFVLSEKLDT-------KATEIKQLQKQIDSLNAQVKELK 61 (190)
T ss_dssp ------CHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhhhhhhh
Confidence 3334444455555555555555554 45555555555555555554433
No 84
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=84.64 E-value=10 Score=29.40 Aligned_cols=52 Identities=21% Similarity=0.293 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKL 306 (318)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl 306 (318)
....+|+.+...|..+...|..++.++..++..|......|..++..|..+|
T Consensus 35 ~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~~rl 86 (89)
T 3bas_A 35 RIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLKKLV 86 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3345677777777777777777766666666666666666666666665554
No 85
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=84.53 E-value=8.4 Score=29.26 Aligned_cols=8 Identities=0% Similarity=0.015 Sum_probs=2.8
Q ss_pred HHHHHHHH
Q 021065 292 NRILKADI 299 (318)
Q Consensus 292 N~~Lrael 299 (318)
+..|..++
T Consensus 50 iq~lE~el 57 (81)
T 1ic2_A 50 LKGTEDEL 57 (81)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 86
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=84.52 E-value=1.3 Score=29.17 Aligned_cols=26 Identities=8% Similarity=0.194 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 257 LNELETQAGQLRAEHSSLLKGLTDVN 282 (318)
Q Consensus 257 l~eLE~qV~~L~~EN~~L~~~l~~L~ 282 (318)
+..||.+|+.|-.+|..|..++..|+
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV~RLk 27 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXLARIK 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 56788888888888877777776654
No 87
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=84.47 E-value=1.2 Score=29.55 Aligned_cols=28 Identities=7% Similarity=0.285 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 256 HLNELETQAGQLRAEHSSLLKGLTDVNQ 283 (318)
Q Consensus 256 ~l~eLE~qV~~L~~EN~~L~~~l~~L~q 283 (318)
+|..||.+|+.|-.+|..|..++..|+.
T Consensus 2 RM~QLEdKVEeLl~~n~~Le~EV~RLk~ 29 (34)
T 1uo4_A 2 RMKQIEDKGEEILSKLYHIENELARIKK 29 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4677888898888888888887776653
No 88
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=84.46 E-value=5.5 Score=27.73 Aligned_cols=30 Identities=10% Similarity=-0.009 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021065 284 KYDESAVNNRILKADIETLRAKLYMFIEIF 313 (318)
Q Consensus 284 k~~~l~~EN~~Lrael~~Lr~kl~~~e~~v 313 (318)
+...+++||..|+...-.-..-+..+|..|
T Consensus 11 evaslenenetlkkknlhkkdliaylekei 40 (49)
T 3he5_A 11 EVASLENENETLKKKNLHKKDLIAYLEKEI 40 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcccHHHHHhcccHHHHHHHHHHHH
Confidence 344455555555544333333333444433
No 89
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=84.32 E-value=3.3 Score=40.26 Aligned_cols=52 Identities=15% Similarity=0.300 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 253 KQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (318)
Q Consensus 253 Kk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~ 304 (318)
.+..+.+|+.++..|+.+...|..++.++.+++...+..-+.|--++.+|+.
T Consensus 8 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkg 59 (403)
T 4etp_A 8 LKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRG 59 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3456677777777777777777777777777777777777777666666654
No 90
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=83.96 E-value=6.5 Score=30.32 Aligned_cols=59 Identities=14% Similarity=0.187 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021065 254 QAHLNELETQAGQLRAEHSSLLKGLTDV------NQKYDESAVNNRILKADIETLRAKLYMFIEI 312 (318)
Q Consensus 254 k~~l~eLE~qV~~L~~EN~~L~~~l~~L------~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~ 312 (318)
+..|+.|+.++..|+.+...|..++.+- -.++..+..+-..|..++..+-.+=-.||++
T Consensus 21 qrEle~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erWeeLe~~ 85 (89)
T 2lw1_A 21 QRELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERWEYLEAL 85 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4568999999999999999999998742 2466777777788888888888877777665
No 91
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=83.94 E-value=3.7 Score=29.44 Aligned_cols=36 Identities=19% Similarity=0.178 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 021065 281 VNQKYDESAVNNRILKADIETLRAKLYMFIEIFLGE 316 (318)
Q Consensus 281 L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~~ 316 (318)
|..+...|...|..|-.-+..-|.+|..+.+.|.++
T Consensus 14 l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 14 LEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333334444444444444444444444444444443
No 92
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=83.93 E-value=14 Score=28.95 Aligned_cols=58 Identities=16% Similarity=0.307 Sum_probs=35.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 242 NRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMF 309 (318)
Q Consensus 242 NRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~ 309 (318)
|-+||-.+=-|-|+- +..++...+..|..+.++|.+ .+..|+.|..++..|+.++..+
T Consensus 14 eLQSALeaEIqAKQ~---i~EELs~vr~~ni~~eskL~e-------ae~rn~eL~~e~~~l~~~~eel 71 (81)
T 1wt6_A 14 ELQEALEEEVLTRQS---LSREMEAIRTDNQNFASQLRE-------AEARNRDLEAHVRQLQERMELL 71 (81)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 666777666666553 344566667777777766665 4555555555555555555553
No 93
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=83.84 E-value=4.5 Score=29.57 Aligned_cols=43 Identities=12% Similarity=0.128 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 021065 274 LLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFLGE 316 (318)
Q Consensus 274 L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~~ 316 (318)
|...+-.|+-+.+.|..||..|+.-+++=+..-+.+|.+|.++
T Consensus 8 lVDtVYaLkDqV~eL~qe~k~m~k~lEeEqkARk~LE~~vrk~ 50 (56)
T 2w6b_A 8 LVDTVYALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKV 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555566666666666666666667777777664
No 94
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=83.71 E-value=1.4 Score=32.49 Aligned_cols=32 Identities=16% Similarity=0.263 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 276 KGLTDVNQKYDESAVNNRILKADIETLRAKLY 307 (318)
Q Consensus 276 ~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~ 307 (318)
.++..|..++..|..+|..|+.++..|+..|.
T Consensus 30 ~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 30 QRMKQLEDKVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55666777777788888888888888887653
No 95
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=83.70 E-value=2.9 Score=50.70 Aligned_cols=59 Identities=17% Similarity=0.246 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 021065 259 ELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFLGEN 317 (318)
Q Consensus 259 eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~~~ 317 (318)
..+.+++.++.+.+.|..++..|+.+|..+..|-..|+.+++....||..++..|..+.
T Consensus 2025 ~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~ 2083 (3245)
T 3vkg_A 2025 ELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLN 2083 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33444555666667777888888888899999999999999999999999999987654
No 96
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=83.61 E-value=7.6 Score=35.09 Aligned_cols=72 Identities=10% Similarity=0.048 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhh
Q 021065 243 RESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESA--VNNRILKADIETLRAKLYMFIEIFL 314 (318)
Q Consensus 243 RESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~--~EN~~Lrael~~Lr~kl~~~e~~v~ 314 (318)
....+..-...+..+.+++.++..++.+...+..++...+.+..... -|=..|..++..+..++..+|+.+.
T Consensus 41 ~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~kE~~aL~kEie~~~~~i~~lE~eil 114 (256)
T 3na7_A 41 KEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNIEEDIAKERSNQANREIE 114 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444445555666666666666666666666665555543321 1112334455555555555555443
No 97
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=83.51 E-value=1.4 Score=29.24 Aligned_cols=28 Identities=7% Similarity=0.306 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 256 HLNELETQAGQLRAEHSSLLKGLTDVNQ 283 (318)
Q Consensus 256 ~l~eLE~qV~~L~~EN~~L~~~l~~L~q 283 (318)
++..||.+|+.|-.+|..|..++..|+.
T Consensus 2 RMnQLEdKvEeLl~~~~~L~~EV~RLk~ 29 (34)
T 2bni_A 2 RMKQIEDKLEEILSKGHHICNELARIKK 29 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 5677888888888888888777776543
No 98
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=83.40 E-value=1.5 Score=29.18 Aligned_cols=28 Identities=11% Similarity=0.269 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 256 HLNELETQAGQLRAEHSSLLKGLTDVNQ 283 (318)
Q Consensus 256 ~l~eLE~qV~~L~~EN~~L~~~l~~L~q 283 (318)
++..||.+|+.|-.+|..|..++..|+.
T Consensus 2 RMnQLEdkVEeLl~~~~~Le~eV~RL~~ 29 (34)
T 2hy6_A 2 KVKQLADAVEELASANYHLANAVARLAK 29 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4677888888888888877777766543
No 99
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=83.39 E-value=5.1 Score=28.20 Aligned_cols=44 Identities=18% Similarity=0.326 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 259 ELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (318)
Q Consensus 259 eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~k 305 (318)
+||.+|+.|+.-...|..++..|-.+|... ...||+++..|..+
T Consensus 2 dlEekv~~Le~~ld~LqTr~ArLlae~~ss---q~KlKqRit~lE~~ 45 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTRFARLLAEYNAT---QMKMKQRLSQLESQ 45 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhc
Confidence 577788877777777766666665555443 34556665555543
No 100
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=83.00 E-value=2 Score=30.81 Aligned_cols=19 Identities=16% Similarity=0.169 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 021065 262 TQAGQLRAEHSSLLKGLTD 280 (318)
Q Consensus 262 ~qV~~L~~EN~~L~~~l~~ 280 (318)
..|+.|+.||+.|+.++..
T Consensus 19 ~d~eaLk~E~~eLk~k~~~ 37 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEA 37 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 4455555555555444443
No 101
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=82.78 E-value=16 Score=28.80 Aligned_cols=50 Identities=10% Similarity=0.111 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (318)
Q Consensus 256 ~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~k 305 (318)
..+.++.++..++.++..+-.++..|+.++..+..+=..+..++..+..+
T Consensus 24 ~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~k 73 (101)
T 3u59_A 24 RAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEK 73 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555444444444444444333
No 102
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=82.73 E-value=4.3 Score=33.11 Aligned_cols=52 Identities=17% Similarity=0.146 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021065 263 QAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFL 314 (318)
Q Consensus 263 qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~ 314 (318)
+|..|+.....+...+..+++++.....+...||-.+..|..++..+.+.|+
T Consensus 31 qVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~ 82 (103)
T 4h22_A 31 QVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALK 82 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444445555555555555555555555555443
No 103
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=82.54 E-value=1.6 Score=33.21 Aligned_cols=7 Identities=14% Similarity=0.363 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 021065 256 HLNELET 262 (318)
Q Consensus 256 ~l~eLE~ 262 (318)
.+.+|..
T Consensus 20 ~f~~Lr~ 26 (83)
T 1nkp_B 20 SFHSLRD 26 (83)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 3344433
No 104
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=82.53 E-value=27 Score=31.37 Aligned_cols=49 Identities=10% Similarity=0.186 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (318)
Q Consensus 257 l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~k 305 (318)
+..|..++..++.++..|..++..+..++..+..+-..++.++..++..
T Consensus 92 ~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~ 140 (256)
T 3na7_A 92 LRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKL 140 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555554444444444444444433333333333333333
No 105
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=82.51 E-value=1.5 Score=40.84 Aligned_cols=42 Identities=19% Similarity=0.220 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 261 ETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETL 302 (318)
Q Consensus 261 E~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~L 302 (318)
+.++..|+.++..|..++..|...+..+..|...||.+++.|
T Consensus 53 ~~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL 94 (251)
T 3m9b_A 53 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 94 (251)
T ss_dssp CHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444555554444444444444444444444444444333
No 106
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=81.97 E-value=4.5 Score=39.69 Aligned_cols=44 Identities=9% Similarity=0.041 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021065 270 EHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIF 313 (318)
Q Consensus 270 EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v 313 (318)
.+..|..++..|+.++..-...-++|+..|+.++.+++.||.-|
T Consensus 114 ~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 114 INEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34568888888888887777788899999999999999999877
No 107
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=81.82 E-value=5.4 Score=32.88 Aligned_cols=25 Identities=16% Similarity=0.313 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 255 AHLNELETQAGQLRAEHSSLLKGLT 279 (318)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~ 279 (318)
.-+++|..++..|+.||..|++++.
T Consensus 8 ~t~EeLaaeL~kLqmENK~LKkkl~ 32 (110)
T 2oa5_A 8 KTYEEMVKEVERLKLENKTLKQKVK 32 (110)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4579999999999999999999987
No 108
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=81.81 E-value=2 Score=28.35 Aligned_cols=26 Identities=8% Similarity=0.084 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 257 LNELETQAGQLRAEHSSLLKGLTDVN 282 (318)
Q Consensus 257 l~eLE~qV~~L~~EN~~L~~~l~~L~ 282 (318)
|..||.+|+.|-.+|..|..++..|+
T Consensus 2 MnQLEdKVEell~~~~~le~EV~Rl~ 27 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEIARNT 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 56788888888888877777776654
No 109
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=81.52 E-value=6 Score=30.36 Aligned_cols=50 Identities=16% Similarity=0.253 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (318)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~ 304 (318)
.+|..-+.++..|+...+--.+-.+.|+-++-.+..||..|+.++..|.+
T Consensus 25 ~eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~~l~~ 74 (75)
T 3a7o_A 25 KELKSKEQEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKLSDLKK 74 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHHHHhc
Confidence 34555556666666666555566677888888899999999998887764
No 110
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=81.36 E-value=18 Score=28.60 Aligned_cols=49 Identities=4% Similarity=0.095 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (318)
Q Consensus 257 l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~k 305 (318)
.+.++.++..++.++..+-.++..|+.++..+..+=..+..++.....+
T Consensus 25 ae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~k 73 (101)
T 3u1c_A 25 AEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDS 73 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444444333333
No 111
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=81.23 E-value=2.9 Score=28.14 Aligned_cols=29 Identities=17% Similarity=0.192 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 268 RAEHSSLLKGLTDVNQKYDESAVNNRILK 296 (318)
Q Consensus 268 ~~EN~~L~~~l~~L~qk~~~l~~EN~~Lr 296 (318)
-.||.+|.+.++.-..++..|..||..|+
T Consensus 6 L~ENekLhk~ie~KdeeIa~Lk~eN~eL~ 34 (37)
T 1t6f_A 6 LKENEKLHKEIEQKDNEIARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 46899999999999999999999998875
No 112
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=80.92 E-value=5.8 Score=32.84 Aligned_cols=48 Identities=21% Similarity=0.341 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 252 RKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKL 306 (318)
Q Consensus 252 RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl 306 (318)
.-+.++..|+.+|..|+. +|..-+...+.+..||..|+.+++.|+...
T Consensus 37 E~q~~v~ql~~~i~~Le~-------eL~e~r~~~q~a~~e~e~Lr~e~~~l~~~~ 84 (120)
T 3i00_A 37 ESQRVVLQLKGHVSELEA-------DLAEQQHLRQQAADDCEFLRAELDELRRQR 84 (120)
T ss_dssp HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334455555555555554 444445556678888999999998885443
No 113
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=80.47 E-value=16 Score=28.12 Aligned_cols=53 Identities=13% Similarity=0.113 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 254 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKL 306 (318)
Q Consensus 254 k~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl 306 (318)
...+..+...+..|+.+...++..+....+.|+.|..=.-.|-.+|.+.|.-|
T Consensus 27 ~~~l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIatYRkLL 79 (86)
T 1x8y_A 27 ARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLL 79 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 45677888888889999999999999999999999988888999999988654
No 114
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=80.37 E-value=18 Score=27.96 Aligned_cols=59 Identities=14% Similarity=0.095 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021065 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFL 314 (318)
Q Consensus 256 ~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~ 314 (318)
.+...+.....|+..+..|..+..+|..++..+.-....|.+.-..|..+|..+++.|.
T Consensus 29 ~l~k~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~~rl~ 87 (89)
T 3bas_A 29 DLAKTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLKKLVG 87 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44566667778888888888888888888888888888888888888888888887663
No 115
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=80.28 E-value=4.6 Score=39.50 Aligned_cols=50 Identities=14% Similarity=0.187 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (318)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~ 304 (318)
..+.+|..+++.|+.++..+..++..+.+++...+.+.+.|--++.+|+.
T Consensus 10 ~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~g 59 (412)
T 3u06_A 10 TEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRD 59 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 34555555666666666666666666666666666666666666655543
No 116
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=80.14 E-value=3.2 Score=29.76 Aligned_cols=27 Identities=30% Similarity=0.386 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 271 HSSLLKGLTDVNQKYDESAVNNRILKA 297 (318)
Q Consensus 271 N~~L~~~l~~L~qk~~~l~~EN~~Lra 297 (318)
...|+.++.+|+.++..|..+|..|++
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el~~ 47 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKLKA 47 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444443333333
No 117
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=80.13 E-value=6.9 Score=28.31 Aligned_cols=50 Identities=18% Similarity=0.237 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKL 306 (318)
Q Consensus 257 l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl 306 (318)
+.++...+..|+.+.+.++..+....++|+.|..=.-.|-.+|.+.|.-|
T Consensus 2 l~~~q~~i~~le~el~~~r~e~~~q~~eYq~LlniK~~Le~EIatYRkLL 51 (59)
T 1gk6_A 2 MKQLEDKVEELLSKNYHLENEVARLKKLVGDLLNVKMALDIEIATYRKLL 51 (59)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 34667778888888888888888888889988888888888998888544
No 118
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=80.00 E-value=17 Score=29.82 Aligned_cols=41 Identities=20% Similarity=0.204 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 021065 276 KGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFLGE 316 (318)
Q Consensus 276 ~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~~ 316 (318)
..+.+....+..|......|...+..|..++...|+....+
T Consensus 62 ~~l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L 102 (129)
T 2fxo_A 62 DNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAEL 102 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555666677777777777777777777777765543
No 119
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=79.71 E-value=14 Score=28.86 Aligned_cols=37 Identities=8% Similarity=0.128 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 252 RKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDES 288 (318)
Q Consensus 252 RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l 288 (318)
+-+.-...++.++...+..|..|..++..++.+...+
T Consensus 35 ~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eel 71 (81)
T 1wt6_A 35 AIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556666777777777777777766655555543
No 120
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=79.59 E-value=9.9 Score=38.26 Aligned_cols=44 Identities=9% Similarity=0.081 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021065 271 HSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFL 314 (318)
Q Consensus 271 N~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~ 314 (318)
...|..++..|+.++..-...-++|+..|+.++.+++.||..|.
T Consensus 113 S~eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQRLE~dI~ 156 (491)
T 1m1j_A 113 STELRRRIVTLKQRVATQVNRIKALQNSIQEQVVEMKRLEVDID 156 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45688888888888887777778999999999999999998875
No 121
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=79.26 E-value=15 Score=30.09 Aligned_cols=28 Identities=14% Similarity=0.341 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 258 NELETQAGQLRAEHSSLLKGLTDVNQKY 285 (318)
Q Consensus 258 ~eLE~qV~~L~~EN~~L~~~l~~L~qk~ 285 (318)
..|+.++..|+..+..|...+.++..++
T Consensus 46 q~L~~el~~l~~~~~~LE~~l~e~e~~~ 73 (129)
T 3tnu_B 46 QRLRAEIDNVKKQCANLQNAIADAEQRG 73 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555544443
No 122
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=78.72 E-value=29 Score=29.38 Aligned_cols=76 Identities=12% Similarity=0.044 Sum_probs=47.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021065 235 RARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFL 314 (318)
Q Consensus 235 R~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~ 314 (318)
|.++.+-||.-.-- ..+..|+.+++..+.....--.++..+.+++.-+..+...-..++.....++..+|+.++
T Consensus 38 R~~k~lE~r~~~de------Er~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~ 111 (147)
T 2b9c_A 38 RGMKVIESRAQKDE------EKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELK 111 (147)
T ss_dssp HHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhcccH------HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666665332 345666777666666555555666666666666666666666666666667776666655
Q ss_pred hc
Q 021065 315 GE 316 (318)
Q Consensus 315 ~~ 316 (318)
.+
T Consensus 112 ~~ 113 (147)
T 2b9c_A 112 TV 113 (147)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 123
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=78.56 E-value=1.7 Score=27.23 Aligned_cols=24 Identities=21% Similarity=0.209 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 287 ESAVNNRILKADIETLRAKLYMFI 310 (318)
Q Consensus 287 ~l~~EN~~Lrael~~Lr~kl~~~e 310 (318)
.+...|..|++++..|.-.+..+|
T Consensus 4 rlkqknarlkqeiaaleyeiaale 27 (28)
T 3ra3_B 4 RLKQKNARLKQEIAALEYEIAALE 27 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhhhHHHHHHHHHHHHHHHhc
Confidence 455567777777777777666554
No 124
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=78.56 E-value=24 Score=33.95 Aligned_cols=26 Identities=19% Similarity=-0.120 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 285 YDESAVNNRILKADIETLRAKLYMFI 310 (318)
Q Consensus 285 ~~~l~~EN~~Lrael~~Lr~kl~~~e 310 (318)
.+.+..||..|+..+.++-.++..+.
T Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (487)
T 3oja_A 444 ETQLAEENARLKKLNGEADLALASAN 469 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhhhhhhhhhhHhcc
Confidence 33333344444444444444443333
No 125
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=78.22 E-value=3.2 Score=38.09 Aligned_cols=57 Identities=25% Similarity=0.272 Sum_probs=26.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 232 DDKRARRMLSNRESARRSRRRKQA-------HLNELETQAGQLRAEHSSLLKGLTDVNQKYDES 288 (318)
Q Consensus 232 e~KR~RR~lsNRESArRSR~RKk~-------~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l 288 (318)
+.||.+|.|+-=.==.|.|.-|.. +.+++..++++|+.||+.|..+++.|+.+..+.
T Consensus 118 ~~~Rt~~iLSalINF~~FRE~~~~~~~e~~~~~e~~~~~i~ql~~En~~le~~Ie~Lk~e~~e~ 181 (250)
T 2ve7_C 118 KAKRTSRFLSGIINFIHFREACRETYMEFLWQYKSSADKMQQLNAAHQEALMKLERLEKEVDED 181 (250)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHSCC---------
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 478999987654444444444444 344444455555555555555555544444433
No 126
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=78.16 E-value=4.2 Score=31.19 Aligned_cols=27 Identities=15% Similarity=0.230 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 255 AHLNELETQAGQLRAEHSSLLKGLTDV 281 (318)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L 281 (318)
.|+..|+.+...|..++..|..++..|
T Consensus 47 ~yI~~L~~~~~~l~~e~~~L~~e~~~L 73 (80)
T 1nlw_A 47 LHIKKLEDSDRKAVHQIDQLQREQRHL 73 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555444444444333
No 127
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=78.12 E-value=2.2 Score=30.69 Aligned_cols=31 Identities=10% Similarity=0.198 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 276 KGLTDVNQKYDESAVNNRILKADIETLRAKL 306 (318)
Q Consensus 276 ~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl 306 (318)
..+..|..++..|..||..|+.++..|+..+
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLIEELKALKDLY 52 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4466777777788888998888888887654
No 128
>3m0a_A TNF receptor-associated factor 2; TRAF2: CIAP2 and the TRAF1: TRAF2: CIAP2 complexes, apoptosi coil, cytoplasm, metal-binding; 2.61A {Homo sapiens} PDB: 3m0d_A 3m06_A
Probab=78.08 E-value=17 Score=26.27 Aligned_cols=58 Identities=16% Similarity=0.172 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021065 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFL 314 (318)
Q Consensus 257 l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~ 314 (318)
+..|+.++..++.-...+..++..+.-+......++...+..+..|..|+..++.+|.
T Consensus 7 ~~~le~k~~~~e~iv~~l~~~v~~~~~~le~~~~q~~~~~~~i~~Le~k~~~l~~~l~ 64 (66)
T 3m0a_A 7 CESLEKKTATFENIVCVLNREVERVAMTAEACSRQHRLDQDKIEALSSKVQQLERSIG 64 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHhHHHHHHHHHHHHHHHHc
Confidence 3344555555555445555666666666666666666678888889999988888764
No 129
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=77.78 E-value=6.6 Score=31.90 Aligned_cols=43 Identities=14% Similarity=0.128 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 021065 274 LLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFLGE 316 (318)
Q Consensus 274 L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~~ 316 (318)
|..+.-.|..++..++.||..|+......-++|..++.-|.++
T Consensus 35 LIqEYl~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL 77 (104)
T 3s9g_A 35 LIKEYLELEKSLSRMEDENNRLRLESKRLDARVRELELELDRL 77 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHH
Confidence 3333444444444455555555554444444555444444443
No 130
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=77.58 E-value=34 Score=34.23 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 021065 293 RILKADIETLRAKLYMFIEIFL 314 (318)
Q Consensus 293 ~~Lrael~~Lr~kl~~~e~~v~ 314 (318)
+.|+..+..|+.||..+|..|.
T Consensus 171 ~~L~~~~~~l~~ki~~l~~~~~ 192 (464)
T 1m1j_B 171 RVLRAVIDSLHKKIQKLENAIA 192 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5567777788888888877765
No 131
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=77.22 E-value=15 Score=28.78 Aligned_cols=31 Identities=16% Similarity=0.167 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 267 LRAEHSSLLKGLTDVNQKYDESAVNNRILKA 297 (318)
Q Consensus 267 L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lra 297 (318)
--.||..|..++..+..++..+..+|..|+.
T Consensus 44 aL~EN~~Lh~~ie~l~eEi~~lk~en~eL~e 74 (83)
T 1uii_A 44 ALKENEKLHKEIEQKDNEIARLKKENKELAE 74 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457777777777755555555555555544
No 132
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=76.66 E-value=20 Score=35.94 Aligned_cols=27 Identities=19% Similarity=0.192 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021065 287 ESAVNNRILKADIETLRAKLYMFIEIF 313 (318)
Q Consensus 287 ~l~~EN~~Lrael~~Lr~kl~~~e~~v 313 (318)
.+..+-+.|+.++..|..++..+++.+
T Consensus 120 ~l~~~~~~l~~~i~~l~~~~~~~~~~l 146 (501)
T 1wle_A 120 SLRARGREIRKQLTLLYPKEAQLEEQF 146 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555544
No 133
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=76.63 E-value=20 Score=28.42 Aligned_cols=54 Identities=13% Similarity=0.178 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 247 RRSRRRKQAHLNELE----TQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLY 307 (318)
Q Consensus 247 rRSR~RKk~~l~eLE----~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~ 307 (318)
+|-+.|-+-|...=. .++..|+.++..|..++.. |..||..+..++..+..|+.
T Consensus 29 ~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~-------L~~e~~~~~~e~d~~k~k~~ 86 (90)
T 2wt7_B 29 KRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQ-------LKQEVSRLARERDAYKVKSE 86 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 455666666655433 2345566666666555554 55566666666666666554
No 134
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=75.93 E-value=4 Score=27.14 Aligned_cols=27 Identities=19% Similarity=0.290 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 276 KGLTDVNQKYDESAVNNRILKADIETL 302 (318)
Q Consensus 276 ~~l~~L~qk~~~l~~EN~~Lrael~~L 302 (318)
.++...++.+..+..+|..|..++..|
T Consensus 7 rKn~a~qqDIddlkrQN~~Le~Qir~l 33 (34)
T 1a93_B 7 RKNDTHQQDIDDLKRQNALLEQQVRAL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhHhhHhhHHHHHHHHHHHHHHHHhc
Confidence 333444444444555555555555443
No 135
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=75.92 E-value=16 Score=32.80 Aligned_cols=29 Identities=14% Similarity=0.172 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 254 QAHLNELETQAGQLRAEHSSLLKGLTDVN 282 (318)
Q Consensus 254 k~~l~eLE~qV~~L~~EN~~L~~~l~~L~ 282 (318)
++++..|..++..|+.++..|..+++.+.
T Consensus 138 ~~~~~~L~~e~~~l~~~~~~l~~qlE~~v 166 (213)
T 1ik9_A 138 QAKNEHLQKENERLLRDWNDVQGRFEKAV 166 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555443
No 136
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=75.85 E-value=18 Score=27.44 Aligned_cols=50 Identities=14% Similarity=0.122 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKL 306 (318)
Q Consensus 257 l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl 306 (318)
.+.+...+..|+.+.+.++..+....++|+.|..=.-.|-.+|.+.|.-|
T Consensus 7 ~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EIatYRkLL 56 (74)
T 2xv5_A 7 RDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLL 56 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666666677777777778888777777888888887543
No 137
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=75.21 E-value=3.7 Score=40.29 Aligned_cols=45 Identities=16% Similarity=0.214 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 021065 271 HSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFLG 315 (318)
Q Consensus 271 N~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~ 315 (318)
|..|..++..|.+++..|..|+..|+.++..|+.++..+++.|++
T Consensus 44 ~~dl~~~lk~le~~~~~L~~e~e~l~~~~~~~~~e~~~~~ee~~~ 88 (428)
T 4b4t_K 44 NSDIYFKLKKLEKEYELLTLQEDYIKDEQRHLKRELKRAQEEVKR 88 (428)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444444444444444444443
No 138
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=75.17 E-value=13 Score=30.58 Aligned_cols=25 Identities=20% Similarity=0.210 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 259 ELETQAGQLRAEHSSLLKGLTDVNQ 283 (318)
Q Consensus 259 eLE~qV~~L~~EN~~L~~~l~~L~q 283 (318)
.|+.++..|+..+..|...+.++..
T Consensus 49 ~L~~el~~l~~~~~sLE~~l~e~e~ 73 (131)
T 3tnu_A 49 NLEIELQSQLSMKASLENSLEETKG 73 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3444444444444444444443333
No 139
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=74.97 E-value=11 Score=29.27 Aligned_cols=40 Identities=15% Similarity=0.192 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 251 RRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAV 290 (318)
Q Consensus 251 ~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~ 290 (318)
..=+..++.|..+|..|+..+..+..++..+.++...+-.
T Consensus 23 ~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~ 62 (83)
T 2xdj_A 23 TQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILL 62 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666677777777777777777777766665554443
No 140
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=74.56 E-value=5 Score=26.61 Aligned_cols=29 Identities=17% Similarity=0.283 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 278 LTDVNQKYDESAVNNRILKADIETLRAKL 306 (318)
Q Consensus 278 l~~L~qk~~~l~~EN~~Lrael~~Lr~kl 306 (318)
...|..+...|..+|..|..++..|+.-|
T Consensus 3 MnQLE~kVEeLl~~n~~Le~eV~rLk~ll 31 (34)
T 2oxj_A 3 MXQLEXKVXELLXKNXHLEXEVXRLKXLV 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 34555666677777888888887777644
No 141
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=74.53 E-value=27 Score=28.34 Aligned_cols=36 Identities=17% Similarity=0.284 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 274 LLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMF 309 (318)
Q Consensus 274 L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~ 309 (318)
+...+..|++.+..+..-...|..+++.|+..|..+
T Consensus 67 ~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~FL 102 (119)
T 3ol1_A 67 AENTLQSFRQDVDNASLARLDLERKVESLQEEIAFL 102 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444455555555555555544
No 142
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=74.31 E-value=1.9 Score=33.43 Aligned_cols=25 Identities=20% Similarity=0.294 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 273 SLLKGLTDVNQKYDESAVNNRILKA 297 (318)
Q Consensus 273 ~L~~~l~~L~qk~~~l~~EN~~Lra 297 (318)
.|+.++.+|..+...|+.||..||.
T Consensus 19 vLKe~I~EL~e~~~qLE~EN~~Lk~ 43 (78)
T 1dip_A 19 ILKEQIRELVEKNSQLERENTLLKT 43 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555666666654
No 143
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=73.54 E-value=29 Score=29.07 Aligned_cols=31 Identities=29% Similarity=0.441 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDES 288 (318)
Q Consensus 258 ~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l 288 (318)
.+|+.++..|+..|..|..++..+..++..+
T Consensus 53 ~eL~~~~~~Le~~n~~L~~~lke~~~~~~~l 83 (155)
T 2oto_A 53 EELEKAKQALEDQRKDLETKLKELQQDYDLA 83 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777778888888888888888777777555
No 144
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=72.90 E-value=17 Score=36.50 Aligned_cols=62 Identities=18% Similarity=0.094 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHhhhhc
Q 021065 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAV-----------NNRILKADIETLRAKLYMFIEIFLGE 316 (318)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~-----------EN~~Lrael~~Lr~kl~~~e~~v~~~ 316 (318)
..+.+|..+...++.+...|+.+...+.+++..+.. +-..|++++..|..+|+.+|+.++.+
T Consensus 70 ~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~~ 142 (501)
T 1wle_A 70 PGIISTWQELRQLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPKEAQL 142 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555556666555555555554332 23478888888888888888877653
No 145
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=72.78 E-value=7.3 Score=25.15 Aligned_cols=25 Identities=24% Similarity=0.357 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 258 NELETQAGQLRAEHSSLLKGLTDVN 282 (318)
Q Consensus 258 ~eLE~qV~~L~~EN~~L~~~l~~L~ 282 (318)
..||.+|.+.+.||-+|..++..|.
T Consensus 4 aqlekevaqaeaenyqleqevaqle 28 (33)
T 1fmh_A 4 AQLEKEVAQAEAENYQLEQEVAQLE 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3455556665555555555554443
No 146
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=72.29 E-value=11 Score=35.98 Aligned_cols=18 Identities=11% Similarity=0.058 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 021065 295 LKADIETLRAKLYMFIEI 312 (318)
Q Consensus 295 Lrael~~Lr~kl~~~e~~ 312 (318)
++.+|..|..+|..++..
T Consensus 38 ~~~~i~~l~~~i~~l~~~ 55 (323)
T 1lwu_C 38 NQQFVTRLQQQLVDIRQT 55 (323)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444433
No 147
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=72.29 E-value=3.9 Score=31.63 Aligned_cols=22 Identities=27% Similarity=0.368 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 021065 255 AHLNELETQAGQLRAEHSSLLK 276 (318)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~ 276 (318)
.++.+|+.++.+|+.||.-|+.
T Consensus 22 e~I~EL~e~~~qLE~EN~~Lk~ 43 (78)
T 1dip_A 22 EQIRELVEKNSQLERENTLLKT 43 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5677788888888888776654
No 148
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=71.73 E-value=6.7 Score=31.72 Aligned_cols=33 Identities=18% Similarity=0.152 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 276 KGLTDVNQKYDESAVNNRILKADIETLRAKLYM 308 (318)
Q Consensus 276 ~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~ 308 (318)
.++..|++++..|..||..|+.++..|..+|..
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367777888888888888888888888888743
No 149
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=71.63 E-value=15 Score=31.69 Aligned_cols=34 Identities=9% Similarity=0.025 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 021065 282 NQKYDESAVNNRILKADIETLRAKLYMFIEIFLG 315 (318)
Q Consensus 282 ~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~ 315 (318)
+.+...+...|..|+.++..-...|..+++.|+.
T Consensus 107 r~~~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~ 140 (154)
T 2ocy_A 107 RKEKYAIEILNKRLTEQLREKDTLLDTLTLQLKN 140 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566666777777777777777777666554
No 150
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=71.59 E-value=11 Score=29.23 Aligned_cols=15 Identities=27% Similarity=0.268 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHH
Q 021065 288 SAVNNRILKADIETL 302 (318)
Q Consensus 288 l~~EN~~Lrael~~L 302 (318)
+..+|..|+.++..|
T Consensus 71 L~~~n~~L~~rl~~L 85 (88)
T 1nkp_A 71 LRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 334444444444433
No 151
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=71.58 E-value=5.7 Score=26.37 Aligned_cols=27 Identities=11% Similarity=0.160 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 256 HLNELETQAGQLRAEHSSLLKGLTDVN 282 (318)
Q Consensus 256 ~l~eLE~qV~~L~~EN~~L~~~l~~L~ 282 (318)
++..||.+|+.|-.++..|..++..|+
T Consensus 2 RMnQledKvEel~~~~~~l~nEv~Rl~ 28 (34)
T 2r2v_A 2 KLKQVADKLEEVASKLYHNANELARVA 28 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 466788888888877777777766654
No 152
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=71.50 E-value=15 Score=28.14 Aligned_cols=27 Identities=26% Similarity=0.250 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 253 KQAHLNELETQAGQLRAEHSSLLKGLT 279 (318)
Q Consensus 253 Kk~~l~eLE~qV~~L~~EN~~L~~~l~ 279 (318)
|...+.+|+.++.....+.+.|+.++.
T Consensus 38 kd~~I~eLEk~L~ekd~eI~~LqseLD 64 (72)
T 3nmd_A 38 RDALIDELELELDQKDELIQMLQNELD 64 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555555554443
No 153
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=71.35 E-value=7.5 Score=25.15 Aligned_cols=27 Identities=22% Similarity=0.183 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021065 288 SAVNNRILKADIETLRAKLYMFIEIFL 314 (318)
Q Consensus 288 l~~EN~~Lrael~~Lr~kl~~~e~~v~ 314 (318)
|+.+-+.|.+=+.+|+.+|..+|+.|+
T Consensus 4 lee~~r~l~~ivq~lq~r~drle~tvq 30 (32)
T 2akf_A 4 LEEDVRNLNAIVQKLQERLDRLEETVQ 30 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445556677777777888888888775
No 154
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=71.34 E-value=3.4 Score=29.78 Aligned_cols=27 Identities=7% Similarity=0.158 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 255 AHLNELETQAGQLRAEHSSLLKGLTDV 281 (318)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L 281 (318)
++|+.+...+..|..||..|..++..|
T Consensus 27 ~FLd~v~~~~~~l~~e~~~L~~~~~~l 53 (57)
T 2wuj_A 27 EFLAQVRKDYEIVLRKKTELEAKVNEL 53 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555444444443
No 155
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=70.59 E-value=3.2 Score=25.96 Aligned_cols=23 Identities=22% Similarity=0.329 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 021065 287 ESAVNNRILKADIETLRAKLYMF 309 (318)
Q Consensus 287 ~l~~EN~~Lrael~~Lr~kl~~~ 309 (318)
.++-||..|.+.+..|.+|+..+
T Consensus 4 alefendaleqkiaalkqkiasl 26 (28)
T 3ra3_A 4 ALEFENDALEQKIAALKQKIASL 26 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhccHHHHHHHHHHHHHHHHh
Confidence 35556666666666666665543
No 156
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=70.51 E-value=28 Score=28.39 Aligned_cols=44 Identities=16% Similarity=0.153 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKAD 298 (318)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrae 298 (318)
+..-..|.+|..|+.++.+|+.++.....-...+-.+|..|+.+
T Consensus 11 ~~~~~~e~e~~~l~~~~~el~~~l~~~~~~~~e~g~~~~~lq~~ 54 (125)
T 1joc_A 11 ERCLKGEGEIEKLQTKVLELQRKLDNTTAAVQELGRENQSLQIK 54 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Confidence 44455666788888888888888877666666666667666544
No 157
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=70.51 E-value=2.8 Score=38.48 Aligned_cols=42 Identities=10% Similarity=0.035 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021065 271 HSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEI 312 (318)
Q Consensus 271 N~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~ 312 (318)
..++..+.+.+..++..+..||+.|+++++.|+.++...+..
T Consensus 143 ~~e~~~~~e~~~~~i~ql~~En~~le~~Ie~Lk~e~~e~~te 184 (250)
T 2ve7_C 143 YMEFLWQYKSSADKMQQLNAAHQEALMKLERLEKEVDEDTTV 184 (250)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHHSCC------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 345556666667777778888888888888888887665543
No 158
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=69.91 E-value=21 Score=25.11 Aligned_cols=27 Identities=22% Similarity=0.249 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 261 ETQAGQLRAEHSSLLKGLTDVNQKYDE 287 (318)
Q Consensus 261 E~qV~~L~~EN~~L~~~l~~L~qk~~~ 287 (318)
+..+..+..+...+..++..+..++..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~k~~~~~ 37 (60)
T 3htk_A 11 ENQVEELTEKCSLKTDEFLKAKEKINE 37 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333
No 159
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=69.88 E-value=3.5 Score=41.92 Aligned_cols=60 Identities=15% Similarity=0.096 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 021065 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFLGE 316 (318)
Q Consensus 257 l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~~ 316 (318)
..+|+.++.+++.+.......|....+....|..+-++...+...|..+...+|++.+++
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~e~~~l~~~~~~~e~~~~~l 396 (575)
T 2i1j_A 337 QQEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKEELEQRQNELQAMMQRL 396 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC--------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888999999988888888888888888888888888888888888888888777764
No 160
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=69.86 E-value=26 Score=34.16 Aligned_cols=60 Identities=12% Similarity=0.128 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021065 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKY--------DESAVNNRILKADIETLRAKLYMFIEIFL 314 (318)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~--------~~l~~EN~~Lrael~~Lr~kl~~~e~~v~ 314 (318)
..+.+|..+...+..+-..|+.+...+.+++ ..+..+-+.|+.++..|..++..+++.+.
T Consensus 28 ~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (421)
T 1ses_A 28 EALLALDREVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREKEARLE 95 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444333 34444555555555555555555555443
No 161
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=69.54 E-value=45 Score=31.79 Aligned_cols=23 Identities=26% Similarity=0.118 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Q 021065 293 RILKADIETLRAKLYMFIEIFLG 315 (318)
Q Consensus 293 ~~Lrael~~Lr~kl~~~e~~v~~ 315 (318)
.+|..++-+|.++|+.++-.|+|
T Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~ 468 (471)
T 3mq9_A 446 EELEGEITTLNHKLQDASAEVER 468 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555544444
No 162
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=69.51 E-value=6.5 Score=26.56 Aligned_cols=29 Identities=24% Similarity=0.250 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 272 SSLLKGLTDVNQKYDESAVNNRILKADIE 300 (318)
Q Consensus 272 ~~L~~~l~~L~qk~~~l~~EN~~Lrael~ 300 (318)
+.|..++.....+...|+.+|+.|..++.
T Consensus 9 q~LNdrlAsyidkVR~LE~~N~~Le~~i~ 37 (39)
T 1gk7_A 9 QELNDRFANYIDKVRFLEQQNKILLAELE 37 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555566667777777877777664
No 163
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=69.15 E-value=7.4 Score=29.68 Aligned_cols=69 Identities=16% Similarity=0.051 Sum_probs=32.7
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 240 LSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMF 309 (318)
Q Consensus 240 lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~ 309 (318)
...-.+-|+-|.+=...+.+|..-|-..... ..=..-|.....-+..|..++..|+.+...|+..+...
T Consensus 8 ~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k-~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~~~~ 76 (82)
T 1am9_A 8 TAHNAIEKRYRSSINDKIIELKDLVVGTEAK-LNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRTAVHKS 76 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCSSCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHhccCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344555555555566677776665532000 00011122233334455555555666666666555543
No 164
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=69.15 E-value=40 Score=32.34 Aligned_cols=33 Identities=15% Similarity=0.108 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 252 RKQAHLNELETQAGQLRAEHSSLLKGLTDVNQK 284 (318)
Q Consensus 252 RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk 284 (318)
|.+++++....+++.|+.||+.|.+.+.++..+
T Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (487)
T 3oja_A 432 NAIRDWDMYQHKETQLAEENARLKKLNGEADLA 464 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhh
Confidence 334444444444444444444444444443333
No 165
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=69.05 E-value=12 Score=36.31 Aligned_cols=26 Identities=15% Similarity=0.348 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 257 LNELETQAGQLRAEHSSLLKGLTDVN 282 (318)
Q Consensus 257 l~eLE~qV~~L~~EN~~L~~~l~~L~ 282 (318)
+..|+.++..|+.+..+|..++..+.
T Consensus 5 ~~~~~~~~~~l~~~~~~l~~~~~~~~ 30 (403)
T 4etp_A 5 IAALKEKIAALKEKIAALKEKIKDTE 30 (403)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555444433
No 166
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=68.91 E-value=5.4 Score=26.34 Aligned_cols=28 Identities=18% Similarity=0.297 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 279 TDVNQKYDESAVNNRILKADIETLRAKL 306 (318)
Q Consensus 279 ~~L~qk~~~l~~EN~~Lrael~~Lr~kl 306 (318)
..|..+...|..+|..|..++..|+.-|
T Consensus 3 ~QLE~kVEeLl~~n~~Le~EV~RLk~Ll 30 (33)
T 3m48_A 3 AQLEAKVEELLSKNWNLENEVARLKKLV 30 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 3455666677788888888888777543
No 167
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=68.46 E-value=5.1 Score=28.83 Aligned_cols=29 Identities=21% Similarity=0.400 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 278 LTDVNQKYDESAVNNRILKADIETLRAKL 306 (318)
Q Consensus 278 l~~L~qk~~~l~~EN~~Lrael~~Lr~kl 306 (318)
|..+...+..+..||..|+.++..|..+|
T Consensus 29 Ld~v~~~~~~l~~e~~~L~~~~~~l~~~l 57 (57)
T 2wuj_A 29 LAQVRKDYEIVLRKKTELEAKVNELDERI 57 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34456677778888888888888887664
No 168
>1fmh_B General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_B
Probab=68.43 E-value=8.8 Score=24.77 Aligned_cols=29 Identities=17% Similarity=0.283 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 278 LTDVNQKYDESAVNNRILKADIETLRAKL 306 (318)
Q Consensus 278 l~~L~qk~~~l~~EN~~Lrael~~Lr~kl 306 (318)
++.|..+.+.|...|-.-++.+..||.|+
T Consensus 3 vqalkkrvqalkarnyaakqkvqalrhkc 31 (33)
T 1fmh_B 3 VQALKKRVQALKARNYAAKQKVQALRHKC 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 34455556667777888888888888876
No 169
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=68.16 E-value=7.3 Score=24.83 Aligned_cols=27 Identities=22% Similarity=0.320 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 258 NELETQAGQLRAEHSSLLKGLTDVNQK 284 (318)
Q Consensus 258 ~eLE~qV~~L~~EN~~L~~~l~~L~qk 284 (318)
+.|..-+..|+.||.+|+.++++|-.+
T Consensus 2 dqlnallasleaenkqlkakveellak 28 (31)
T 1p9i_A 2 DQLNALLASLEAENKQLKAKVEELLAK 28 (31)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666778888998888888776543
No 170
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=67.55 E-value=41 Score=33.74 Aligned_cols=53 Identities=8% Similarity=-0.042 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021065 262 TQAGQLRAEHSSLLKGLTDVNQK---YDESAVNNRILKADIETLRAKLYMFIEIFL 314 (318)
Q Consensus 262 ~qV~~L~~EN~~L~~~l~~L~qk---~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~ 314 (318)
.+++.|+.+-..+.+++..+... ...+..+-+.|+.++.+|..++..+++.+.
T Consensus 47 ~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~~~~~~~~~~~ 102 (485)
T 3qne_A 47 FDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKNLR 102 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444433221 234555666666666666666666666554
No 171
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=67.15 E-value=71 Score=31.41 Aligned_cols=53 Identities=17% Similarity=0.190 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021065 262 TQAGQLRAEHSSLLKGLTDVNQK---YDESAVNNRILKADIETLRAKLYMFIEIFL 314 (318)
Q Consensus 262 ~qV~~L~~EN~~L~~~l~~L~qk---~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~ 314 (318)
.+++.|+.+...+.+++..+... ...+..+-+.|+.++..|..++..+++.+.
T Consensus 45 ~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (455)
T 2dq0_A 45 KEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELKKKID 100 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444433211 234455555566666666666666665554
No 172
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=67.03 E-value=44 Score=28.77 Aligned_cols=55 Identities=18% Similarity=0.163 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 021065 262 TQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFLGE 316 (318)
Q Consensus 262 ~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~~ 316 (318)
..|..|+.++..|-.++..-+.+|..+..+=...-.++..+..++.-++..|.|+
T Consensus 98 Rsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~~~~~~~~~~~~~ 152 (155)
T 2efr_A 98 RSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKNYHLENEVARL 152 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHh
Confidence 3444444444444444444444444444444444455555667777777777664
No 173
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=66.57 E-value=2.8 Score=38.38 Aligned_cols=32 Identities=22% Similarity=0.260 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Q 021065 267 LRAEHSSLLKGLTDVNQ---KYDESAVNNRILKAD 298 (318)
Q Consensus 267 L~~EN~~L~~~l~~L~q---k~~~l~~EN~~Lrae 298 (318)
|..||+.|++++..|++ ++..+..||..||.-
T Consensus 24 l~~eN~~Lk~e~~~l~~~~~~~~~l~~En~rLr~l 58 (255)
T 2j5u_A 24 TYTENQHLKERLEELAQLESEVADLKKENKDLKES 58 (255)
T ss_dssp --CTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555444433 244555566666554
No 174
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=66.40 E-value=11 Score=25.23 Aligned_cols=29 Identities=21% Similarity=0.196 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 279 TDVNQKYDESAVNNRILKADIETLRAKLY 307 (318)
Q Consensus 279 ~~L~qk~~~l~~EN~~Lrael~~Lr~kl~ 307 (318)
..|..+...|..+|..|..++..|+..+.
T Consensus 4 nQLE~KVEeLl~~~~~Le~eV~RLk~ll~ 32 (36)
T 1kd8_B 4 KQLKAKVEELKSKLWHLKNKVARLKKKNA 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 33444555566666677777777776654
No 175
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=66.32 E-value=42 Score=32.02 Aligned_cols=38 Identities=16% Similarity=0.071 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 273 SLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFI 310 (318)
Q Consensus 273 ~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e 310 (318)
+|.+++..-..++++++.|-..|.++++.+++.|+.+.
T Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (471)
T 3mq9_A 433 SLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLR 470 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455555556677888888888888888888887654
No 176
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=66.22 E-value=16 Score=25.35 Aligned_cols=34 Identities=18% Similarity=0.181 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021065 280 DVNQKYDESAVNNRILKADIETLRAKLYMFIEIF 313 (318)
Q Consensus 280 ~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v 313 (318)
+|.|++..+..|-..-+.+|..|+.|++.||+.-
T Consensus 6 ~l~qkI~kVdrEI~Kte~kI~~lqkKlkeLee~a 39 (42)
T 2l5g_B 6 ELIQNMDRVDREITMVEQQISKLKKKQQQLEEEA 39 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4566677777777777888888888888888753
No 177
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=65.76 E-value=26 Score=31.96 Aligned_cols=57 Identities=16% Similarity=0.248 Sum_probs=40.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 232 DDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRI 294 (318)
Q Consensus 232 e~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~ 294 (318)
.....|+-+..|-.+-+ +.+..|+.++++.+.|+.++..++...+++...+...-..
T Consensus 161 sde~Ik~yLa~R~~~lK------~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~~~~ 217 (228)
T 3q0x_A 161 NDSVVKQFLAFRLSEVK------GTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQYDK 217 (228)
T ss_dssp CHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35677777777665443 3567788888888888888888888877776665444333
No 178
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=65.46 E-value=54 Score=26.64 Aligned_cols=48 Identities=17% Similarity=0.273 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (318)
Q Consensus 257 l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~ 304 (318)
+.++...+..|+.+...++..+....+.|+.|..=.-.|..+|.+.|.
T Consensus 77 l~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Ld~EIatYRk 124 (129)
T 3tnu_B 77 LKDARNKLAELEEALQKAKQDMARLLREYQELMNTKLALDVEIATYRK 124 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455566666666666666666666677666655566666666654
No 179
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=64.62 E-value=23 Score=35.49 Aligned_cols=61 Identities=18% Similarity=0.059 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhh
Q 021065 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVN---NRILKADIETLRAKLYMFIEIFLG 315 (318)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~E---N~~Lrael~~Lr~kl~~~e~~v~~ 315 (318)
..+.+|..+...++.+...|+.+...+..++..+... -..|++++..|..+|+.+|+.++.
T Consensus 33 ~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~~~~~ 96 (485)
T 3qne_A 33 DEIIAEYKEWVKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAE 96 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666666666666666555432 245677777777777777766554
No 180
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=63.90 E-value=63 Score=26.93 Aligned_cols=28 Identities=7% Similarity=0.194 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 279 TDVNQKYDESAVNNRILKADIETLRAKL 306 (318)
Q Consensus 279 ~~L~qk~~~l~~EN~~Lrael~~Lr~kl 306 (318)
..|..++..|..+|..|+..+..++...
T Consensus 53 ~eL~~~~~~Le~~n~~L~~~lke~~~~~ 80 (155)
T 2oto_A 53 EELEKAKQALEDQRKDLETKLKELQQDY 80 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444333
No 181
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=63.72 E-value=26 Score=42.79 Aligned_cols=31 Identities=13% Similarity=0.172 Sum_probs=13.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 242 NRESARRSRRRKQAHLNELETQAGQLRAEHS 272 (318)
Q Consensus 242 NRESArRSR~RKk~~l~eLE~qV~~L~~EN~ 272 (318)
+-..|+..-..+++.|.+|+.+++.|+.+-+
T Consensus 2022 ~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~ 2052 (3245)
T 3vkg_A 2022 AANELKLKQDEIVATITALEKSIATYKEEYA 2052 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444445555555544444433
No 182
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=63.64 E-value=59 Score=26.49 Aligned_cols=54 Identities=19% Similarity=0.222 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFI 310 (318)
Q Consensus 257 l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e 310 (318)
+.+.+..+..|......|..++..+..++....-.|..|.+.-..|...|..++
T Consensus 64 l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk 117 (129)
T 2fxo_A 64 LADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELK 117 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555556666666666666666666666555555555444444444443333
No 183
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=62.11 E-value=5.3 Score=24.95 Aligned_cols=24 Identities=21% Similarity=0.261 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 265 GQLRAEHSSLLKGLTDVNQKYDES 288 (318)
Q Consensus 265 ~~L~~EN~~L~~~l~~L~qk~~~l 288 (318)
..|+.||..|..++..|.+++..+
T Consensus 3 dalefendaleqkiaalkqkiasl 26 (28)
T 3ra3_A 3 DALEFENDALEQKIAALKQKIASL 26 (28)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHhccHHHHHHHHHHHHHHHHh
Confidence 457788888888888777776654
No 184
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=61.47 E-value=14 Score=24.51 Aligned_cols=28 Identities=7% Similarity=0.029 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 279 TDVNQKYDESAVNNRILKADIETLRAKL 306 (318)
Q Consensus 279 ~~L~qk~~~l~~EN~~Lrael~~Lr~kl 306 (318)
..|..++..|..+|..|..++..|+.-|
T Consensus 4 nQLEdKVEeLl~~~~~Le~EV~RLk~ll 31 (34)
T 3c3f_A 4 XQIEXKLEXILSXLYHXENEXARIXKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 4455566667777777777777776544
No 185
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=61.45 E-value=32 Score=29.13 Aligned_cols=51 Identities=20% Similarity=0.257 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKL 306 (318)
Q Consensus 256 ~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl 306 (318)
++..|...+.....+...|..++..-+.+...++.++..+..+++.|.+.|
T Consensus 33 ~l~~l~~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasL 83 (135)
T 2e7s_A 33 DYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASL 83 (135)
T ss_dssp HHHHHHHHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344544555556666666666666555556666666666666666666554
No 186
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=61.15 E-value=58 Score=25.57 Aligned_cols=55 Identities=11% Similarity=0.198 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMF 309 (318)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~ 309 (318)
..|..|+.+...|..+-.....+.+.+..+...+..+-..|..++..-...|..|
T Consensus 39 ~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~~~qLdkL 93 (96)
T 3q8t_A 39 ENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRYAQMQLDKL 93 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444444444444444444444444445555555555555444444443
No 187
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=61.13 E-value=57 Score=25.45 Aligned_cols=22 Identities=9% Similarity=0.055 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 021065 289 AVNNRILKADIETLRAKLYMFI 310 (318)
Q Consensus 289 ~~EN~~Lrael~~Lr~kl~~~e 310 (318)
..|=..|+.+++.=.+.+..+.
T Consensus 53 K~El~~Lq~qLe~kd~ei~rL~ 74 (81)
T 3qh9_A 53 KAEVAQLQEQVALKDAEIERLH 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHH
Confidence 3344444444444444444333
No 188
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=61.07 E-value=33 Score=26.49 Aligned_cols=14 Identities=21% Similarity=0.240 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHH
Q 021065 254 QAHLNELETQAGQL 267 (318)
Q Consensus 254 k~~l~eLE~qV~~L 267 (318)
+..+..|...|-.+
T Consensus 22 n~~f~~Lr~~vP~~ 35 (88)
T 1nkp_A 22 KRSFFALRDQIPEL 35 (88)
T ss_dssp HHHHHHHHTTCGGG
T ss_pred HHHHHHHHHHCCCC
Confidence 44555555555443
No 189
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=60.48 E-value=48 Score=24.37 Aligned_cols=33 Identities=9% Similarity=0.088 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAV 290 (318)
Q Consensus 258 ~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~ 290 (318)
++|...+..-..+....+.++.+|+..++.|..
T Consensus 38 eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~ 70 (77)
T 3trt_A 38 ADLSEAANRNNDALRQAKQESTEYRRQVQSLTM 70 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444333333334444444444444333
No 190
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=59.94 E-value=7.8 Score=32.34 Aligned_cols=23 Identities=13% Similarity=0.162 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 021065 284 KYDESAVNNRILKADIETLRAKL 306 (318)
Q Consensus 284 k~~~l~~EN~~Lrael~~Lr~kl 306 (318)
++..+..|++.|+.++..|+.++
T Consensus 33 ~v~~l~~e~k~l~ke~~~l~~~~ 55 (171)
T 2zvf_A 33 TVERFFEEWKDQRKEIERLKSVI 55 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444433
No 191
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=59.92 E-value=15 Score=24.15 Aligned_cols=28 Identities=11% Similarity=0.185 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 279 TDVNQKYDESAVNNRILKADIETLRAKL 306 (318)
Q Consensus 279 ~~L~qk~~~l~~EN~~Lrael~~Lr~kl 306 (318)
..|..++..|..+|..|..++..|+.-|
T Consensus 3 nQLEdKvEeLl~~~~~Le~EV~RLk~lL 30 (33)
T 3c3g_A 3 KXIEXKLXEIXSKXYHXENXLARIKXLL 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3445566667777777777777776544
No 192
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=59.75 E-value=43 Score=27.61 Aligned_cols=14 Identities=29% Similarity=0.544 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHH
Q 021065 255 AHLNELETQAGQLR 268 (318)
Q Consensus 255 ~~l~eLE~qV~~L~ 268 (318)
.++..|+.++..-+
T Consensus 47 ~~i~~Le~eL~e~r 60 (120)
T 3i00_A 47 GHVSELEADLAEQQ 60 (120)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444433
No 193
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=59.47 E-value=15 Score=24.68 Aligned_cols=28 Identities=11% Similarity=0.115 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 281 VNQKYDESAVNNRILKADIETLRAKLYM 308 (318)
Q Consensus 281 L~qk~~~l~~EN~~Lrael~~Lr~kl~~ 308 (318)
|..+...|..+|..|..++..|+.-+..
T Consensus 6 LE~kVEeLl~~~~~Le~EV~RL~~ll~~ 33 (36)
T 1kd8_A 6 LEAEVEEIESEVWHLENEVARLEKENAE 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhcc
Confidence 3344445556666666666666655544
No 194
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=59.26 E-value=1.1e+02 Score=31.18 Aligned_cols=81 Identities=15% Similarity=0.122 Sum_probs=35.3
Q ss_pred ccccCCchHHHHHHHHHHhHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 224 TIEGLDSVDDKRARRMLSNRESARRSRRRKQAH-----LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKAD 298 (318)
Q Consensus 224 ~~~~~d~~e~KR~RR~lsNRESArRSR~RKk~~-----l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrae 298 (318)
+...+++.+.|++.+-.+ +||++- ++.+|.+.++++.|...-.+-+...+++......--..+|..
T Consensus 287 vs~ilt~~elkqrqeee~---------r~~qew~~~hp~~~Aer~~e~a~ael~~a~k~~a~~~er~~~t~~~~~~~~~~ 357 (551)
T 2b5u_A 287 VSDVLSPDQVKQRQDEEN---------RRQQEWDATHPVEAAERNYERARAELNQANEDVARNQERQAKAVQVYNSRKSE 357 (551)
T ss_dssp EEECCCHHHHHHHHHHHH---------HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EeecCCHHHHHHHHHHHH---------HHHHHhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 345677766665543222 222222 445555555555554444333333333322222222234445
Q ss_pred HHHHHHHHHHHHHhh
Q 021065 299 IETLRAKLYMFIEIF 313 (318)
Q Consensus 299 l~~Lr~kl~~~e~~v 313 (318)
+.+....|..+.-.+
T Consensus 358 ~~~~n~~~~~~~~~~ 372 (551)
T 2b5u_A 358 LDAANKTLADAIAEI 372 (551)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHhh
Confidence 544444554444433
No 195
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=58.50 E-value=38 Score=34.66 Aligned_cols=93 Identities=9% Similarity=0.010 Sum_probs=48.4
Q ss_pred ccccccCCchH--HHHHHHHHHhHHHHHHHHHHHH--HHHHHHH----HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 021065 222 TETIEGLDSVD--DKRARRMLSNRESARRSRRRKQ--AHLNELE----TQAGQLRAEHSSLLKGLT-DVNQKYDESAVNN 292 (318)
Q Consensus 222 ~~~~~~~d~~e--~KR~RR~lsNRESArRSR~RKk--~~l~eLE----~qV~~L~~EN~~L~~~l~-~L~qk~~~l~~EN 292 (318)
|.+++.|+..+ .++.-..|+|..--= ++.+|. +|+..+- .++.+-. +|.....++. +|++++..|..+-
T Consensus 49 CrLQglLdkqErDltkrINELKnqLEdl-sKnsKdseqy~k~~~E~Lr~rq~q~~-dNdNtynE~S~ELRRrIqyLKekV 126 (562)
T 3ghg_A 49 CRMKGLIDEVNQDFTNRINKLKNSLFEY-QKNNKDSHSLTTNIMEILRGDFSSAN-NRDNTYNRVSEDLRSRIEVLKRKV 126 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHH-HHHHHHHHHHHHHHHHTTSSHHHHHH-HHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred cchhhhHHhhcCcHHHHHHHHHHHHHHH-HhhchhHHHHHHHHHHHHHHHHHhhh-ccchhHHHHHHHHHHHHHHHHHHH
Confidence 44555555433 333333555543322 444443 2333332 2223322 4444556666 7777766665443
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhc
Q 021065 293 RILKADIETLRAKLYMFIEIFLGE 316 (318)
Q Consensus 293 ~~Lrael~~Lr~kl~~~e~~v~~~ 316 (318)
..-.++|..||.-|..+-.-|+|+
T Consensus 127 dnQlsnIrvLQsnLedq~~kIQRL 150 (562)
T 3ghg_A 127 IEKVQHIQLLQKNVRAQLVDMKRL 150 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333377788888887777777765
No 196
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=58.37 E-value=14 Score=23.89 Aligned_cols=28 Identities=11% Similarity=0.281 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 279 TDVNQKYDESAVNNRILKADIETLRAKL 306 (318)
Q Consensus 279 ~~L~qk~~~l~~EN~~Lrael~~Lr~kl 306 (318)
..|..+....+.||-.|.+++..|...+
T Consensus 4 aqlekevaqaeaenyqleqevaqlehec 31 (33)
T 1fmh_A 4 AQLEKEVAQAEAENYQLEQEVAQLEHEC 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 3445556668889999999888887653
No 197
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A
Probab=58.31 E-value=74 Score=27.77 Aligned_cols=24 Identities=21% Similarity=0.403 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 276 KGLTDVNQKYDESAVNNRILKADIETL 302 (318)
Q Consensus 276 ~~l~~L~qk~~~l~~EN~~Lrael~~L 302 (318)
.++...++.|..+ |..|+.++..|
T Consensus 186 ~el~~ak~~ye~l---n~~L~~eLp~l 209 (251)
T 2fic_A 186 EELIKAQKVFEEM---NVDLQEELPSL 209 (251)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 3344444444433 45555555544
No 198
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=57.98 E-value=55 Score=24.71 Aligned_cols=27 Identities=19% Similarity=0.204 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 254 QAHLNELETQAGQLRAEHSSLLKGLTD 280 (318)
Q Consensus 254 k~~l~eLE~qV~~L~~EN~~L~~~l~~ 280 (318)
-.|+..|+.++..|+.++..|..++..
T Consensus 49 i~YI~~Lq~~~~~L~~e~~~L~~~~~~ 75 (82)
T 1am9_A 49 IDYIRFLQHSNQKLKQENLSLRTAVHK 75 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467888888888888888777776654
No 199
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=57.82 E-value=60 Score=24.68 Aligned_cols=30 Identities=13% Similarity=0.214 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 260 LETQAGQLRAEHSSLLKGLTDVNQKYDESA 289 (318)
Q Consensus 260 LE~qV~~L~~EN~~L~~~l~~L~qk~~~l~ 289 (318)
|...|..|..|+..|..++..+.+++..+.
T Consensus 2 ~~k~v~~l~~E~eel~~klk~~~ee~~~~~ 31 (71)
T 1uix_A 2 STSDVANLANEKEELNNKLKEAQEQLSRLK 31 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666665555443
No 200
>3l4f_A RHO guanine nucleotide exchange factor 7; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=57.48 E-value=29 Score=25.77 Aligned_cols=33 Identities=12% Similarity=0.083 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 021065 284 KYDESAVNNRILKADIETLRAKLYMFIEIFLGE 316 (318)
Q Consensus 284 k~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~~ 316 (318)
+.+.|..||..++.-++.-+..-+.+|.+|.++
T Consensus 15 ev~eLk~e~k~~k~~le~eqraRk~LE~~vrk~ 47 (61)
T 3l4f_A 15 EVQELRQDNKKMKKSLEEEQRARKDLEKLVRKV 47 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455555555555555555555555544
No 201
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=57.25 E-value=75 Score=25.65 Aligned_cols=38 Identities=11% Similarity=0.108 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 266 QLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR 303 (318)
Q Consensus 266 ~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr 303 (318)
.++.+...|++.+..+.-....|+.+-..|+.++.-|+
T Consensus 66 ~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~FLK 103 (119)
T 3ol1_A 66 EAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLK 103 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555444444445555555555544443
No 202
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=56.66 E-value=74 Score=25.71 Aligned_cols=46 Identities=17% Similarity=0.180 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 265 GQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFI 310 (318)
Q Consensus 265 ~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e 310 (318)
+.|+....+|..++..|..+-=.++.....-.-+|.+|+.+|..+.
T Consensus 45 ~~L~e~~keLh~~I~~LEeEKYDlE~kv~kq~yEI~eL~~rV~dlg 90 (106)
T 1j1d_B 45 DQLREKAKELWQTIYNLEAEKFDLQEKFKQQKYEINVLRNRINDNQ 90 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhHHHHHHHHHHHHhc
Confidence 4566677777777777766655566666666778888888888773
No 203
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=55.82 E-value=65 Score=24.46 Aligned_cols=72 Identities=15% Similarity=0.178 Sum_probs=53.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 233 DKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKL 306 (318)
Q Consensus 233 ~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl 306 (318)
.|.++.-+-+... ....|-...+.++...+..|+.+.+.++..+....+.|+.|..=.-.|-.+|.+.|.-|
T Consensus 6 l~~~~~sLE~~l~--e~e~~~~~~~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EIatYRkLL 77 (84)
T 1gk4_A 6 LKGTNESLERQMR--EMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLL 77 (84)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3444444444333 33334455678888899999999999999999999999999988888999999888644
No 204
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=55.77 E-value=99 Score=26.58 Aligned_cols=26 Identities=8% Similarity=-0.083 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021065 289 AVNNRILKADIETLRAKLYMFIEIFL 314 (318)
Q Consensus 289 ~~EN~~Lrael~~Lr~kl~~~e~~v~ 314 (318)
..+...+..++..|+.+++..+.+|.
T Consensus 107 r~~~~~~e~r~~~L~~ql~e~~~~l~ 132 (154)
T 2ocy_A 107 RKEKYAIEILNKRLTEQLREKDTLLD 132 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555555555544444
No 205
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=55.76 E-value=53 Score=23.45 Aligned_cols=28 Identities=7% Similarity=0.071 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 257 LNELETQAGQLRAEHSSLLKGLTDVNQK 284 (318)
Q Consensus 257 l~eLE~qV~~L~~EN~~L~~~l~~L~qk 284 (318)
+++|..+|..|..+...|...+..|+..
T Consensus 6 i~~Lss~V~~L~~kVdqLssdV~al~~~ 33 (52)
T 1jcd_A 6 ADQASSDAQTANAKADQASNDANAARSD 33 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555544444433
No 206
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=55.66 E-value=15 Score=28.02 Aligned_cols=25 Identities=12% Similarity=0.118 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 283 QKYDESAVNNRILKADIETLRAKLY 307 (318)
Q Consensus 283 qk~~~l~~EN~~Lrael~~Lr~kl~ 307 (318)
++...+..++..|+.+...|+.+|.
T Consensus 54 ~~~~~l~~e~~~L~~e~~~L~~~L~ 78 (80)
T 1nlw_A 54 DSDRKAVHQIDQLQREQRHLKRQLE 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333444444445555555554443
No 207
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=55.48 E-value=69 Score=24.70 Aligned_cols=47 Identities=21% Similarity=0.216 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETL 302 (318)
Q Consensus 256 ~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~L 302 (318)
.+..|+.+++.-+.+-..++.++..+.+.+..-..|=..||..+..|
T Consensus 28 ~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgLakL 74 (79)
T 3cvf_A 28 QLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREGLARL 74 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 34455555555555555555555555555555555444444444443
No 208
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=54.34 E-value=26 Score=32.85 Aligned_cols=49 Identities=12% Similarity=0.196 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 260 LETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIE 311 (318)
Q Consensus 260 LE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~ 311 (318)
.+.+++.|+.+|+.|..+++.|.++...+...| .+++..|+..+...++
T Consensus 183 ~~~eie~L~~~~~~L~eEi~~Le~~~e~~~k~n---~~rl~~Lqk~~~~~~~ 231 (315)
T 2ve7_A 183 DAFKLESLEAKNRALNEQIARLEQERSTANKAN---AERLKRLQKSADLYKD 231 (315)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HTTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh---HHHHHHHHHHHHHHHH
Confidence 355677777777777777777766555544433 4445555555554443
No 209
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=53.18 E-value=12 Score=26.50 Aligned_cols=24 Identities=21% Similarity=0.209 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 255 AHLNELETQAGQLRAEHSSLLKGL 278 (318)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l 278 (318)
.|++.|+.++..|+.....|...+
T Consensus 44 ~~~~~L~~ri~~Le~~l~~l~~~l 67 (70)
T 1zme_C 44 KYLQQLQKDLNDKTEENNRLKALL 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578889999988888877776654
No 210
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=53.15 E-value=51 Score=32.98 Aligned_cols=26 Identities=12% Similarity=-0.028 Sum_probs=16.7
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHhhh
Q 021065 289 AVN-NRILKADIETLRAKLYMFIEIFL 314 (318)
Q Consensus 289 ~~E-N~~Lrael~~Lr~kl~~~e~~v~ 314 (318)
..+ -+.|+.++.+|..++..+++.+.
T Consensus 109 ~~~~~~~l~~~i~~le~~~~~~~~~~~ 135 (484)
T 3lss_A 109 LKQLSKDLSDQVAGLAKEAQQLEEERD 135 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344 56667777777777776666554
No 211
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=52.53 E-value=64 Score=25.25 Aligned_cols=31 Identities=13% Similarity=0.112 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 276 KGLTDVNQKYDESAVNNRILKADIETLRAKL 306 (318)
Q Consensus 276 ~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl 306 (318)
.++..|..++..+..|+..||.++..|+.-+
T Consensus 46 ~EN~~Lh~~ie~l~eEi~~lk~en~eL~ela 76 (83)
T 1uii_A 46 KENEKLHKEIEQKDNEIARLKKENKELAEVA 76 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444433
No 212
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=52.47 E-value=75 Score=24.19 Aligned_cols=52 Identities=17% Similarity=0.087 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 259 ELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFI 310 (318)
Q Consensus 259 eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e 310 (318)
+|..++..-+.|...|..-+..++.++-.-..=|+.|..+...++..+..++
T Consensus 7 eL~~kl~~Kq~EI~rLnvlvgslR~KLiKYtelnKKLe~~~~~~q~s~~~l~ 58 (74)
T 2q6q_A 7 ELNFKLREKQNEIFELKKIAETLRSKLEKYVDITKKLEDQNLNLQIKISDLE 58 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 3444444444444444444444444444444445555555555555554444
No 213
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=52.13 E-value=75 Score=24.11 Aligned_cols=31 Identities=19% Similarity=0.304 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 259 ELETQAGQLRAEHSSLLKGLTDVNQKYDESA 289 (318)
Q Consensus 259 eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~ 289 (318)
+|...|..|..|+..|..++..+.+++..+.
T Consensus 3 ~L~k~i~~l~~E~eel~~klk~~~ee~~~~~ 33 (71)
T 1s1c_X 3 MLTKDIEILRRENEELTEKMKKAEEEYKLEK 33 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777777777777777776666554
No 214
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=51.42 E-value=59 Score=24.76 Aligned_cols=53 Identities=19% Similarity=0.073 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 021065 263 QAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFLG 315 (318)
Q Consensus 263 qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~ 315 (318)
++..|..-.-+|+.+|.....-...|+.++..++.-+..|..++......++.
T Consensus 18 EI~rLnvlvgslR~KLiKYtelnKKLe~~~~~~q~s~~~l~k~~~d~~~~~~~ 70 (74)
T 2q6q_A 18 EIFELKKIAETLRSKLEKYVDITKKLEDQNLNLQIKISDLEKKLSDANSTFKE 70 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhccccchhhHh
Confidence 33444444444555555555555566777788888888888887666555543
No 215
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=51.37 E-value=22 Score=31.46 Aligned_cols=30 Identities=23% Similarity=0.417 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQK 284 (318)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk 284 (318)
..+.+|..++.+|+.+|..|+.+.+...++
T Consensus 152 d~~~~L~~~n~~LqkeNeRL~~E~n~~l~q 181 (184)
T 3w03_C 152 DTIAENQAKNEHLQKENERLLRDWNDVQGR 181 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666666666555555544433
No 216
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=51.32 E-value=46 Score=26.98 Aligned_cols=63 Identities=22% Similarity=0.216 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHH------H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 247 RRSRRRKQAHLNELE------T-QAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMF 309 (318)
Q Consensus 247 rRSR~RKk~~l~eLE------~-qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~ 309 (318)
+.-|..|+.+|.+-- . -.+.|+.-..+|..++..|..+-=.++..-..-.-+|.+|+.+|..+
T Consensus 20 q~e~EeKkkiLaER~~pL~id~l~~~~L~e~~keLh~~I~~lEeEKYDlE~kv~kq~yEI~eL~~rV~dl 89 (107)
T 1ytz_T 20 QTARETKKKVLAERRKPLNIDHLNEDKLRDKAKELWDWLYQLQTEKYDFAEQIKRKKYEIVTLRNRIDQA 89 (107)
T ss_dssp HHHHHHHHHHHHHTCCCCCCSSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHh
Confidence 334445667776511 1 23357777778888888777666666666666677899999999887
No 217
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=50.11 E-value=29 Score=31.46 Aligned_cols=46 Identities=22% Similarity=0.207 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLY 307 (318)
Q Consensus 258 ~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~ 307 (318)
.=.|.|++.|+.+|..|..++..|. ....+|..+-.++..|.-+|-
T Consensus 68 SL~erQ~~~LR~r~~~Le~~L~~Li----~~A~~Ne~l~~~~~~l~l~LL 113 (252)
T 3e98_A 68 SLVERQVRLLRERNIEMRHRLSQLM----DVARENDRLFDKTRRLVLDLL 113 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHh
Confidence 3345567777777777777766543 455667777777777666665
No 218
>2p4v_A Transcription elongation factor GREB; transcript cleavage, GRE-factors, RNA polymerase; 2.60A {Escherichia coli}
Probab=50.06 E-value=54 Score=27.71 Aligned_cols=52 Identities=15% Similarity=0.140 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 257 LNELETQAGQLRA-EHSSLLKGLTDVN--------QKYDESAVNNRILKADIETLRAKLYM 308 (318)
Q Consensus 257 l~eLE~qV~~L~~-EN~~L~~~l~~L~--------qk~~~l~~EN~~Lrael~~Lr~kl~~ 308 (318)
++.|+.+++.|.. +-..+...+...+ ..|+....+...+..++..|..+|..
T Consensus 11 ~~~L~~EL~~L~~~~R~~i~~~i~~Ar~~GDlsENaeY~aak~~q~~~e~rI~~L~~~L~~ 71 (158)
T 2p4v_A 11 YEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYLTKCMEN 71 (158)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHHHSCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHhCCCcccchhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4556666666633 4444555554443 33444444444455555555554443
No 219
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=49.70 E-value=1e+02 Score=25.01 Aligned_cols=49 Identities=20% Similarity=0.281 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (318)
Q Consensus 256 ~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~ 304 (318)
.+.++...+..|+.+...++..+....+.|+.|..=.-.|..+|.+.|.
T Consensus 78 ~l~~~q~~i~~lE~eL~~~r~em~~ql~EYq~Ll~vKl~Ld~EIatYRk 126 (131)
T 3tnu_A 78 QLAQIQEMIGSVEEQLAQLRCEMEQQNQEYKILLDVKTRLEQEIATYRR 126 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556677777777777777777777777777666677777777664
No 220
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=49.50 E-value=40 Score=32.13 Aligned_cols=58 Identities=12% Similarity=0.138 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021065 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIF 313 (318)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v 313 (318)
+|++.|+.+++.|+.+...|..++..- ..-......-+.|.+++..+..++..++..+
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (426)
T 1lrz_A 247 EYIKELNEERDILNKDLNKALKDIEKR-PENKKAHNKRDNLQQQLDANEQKIEEGKRLQ 304 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhC-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555555555554443211 0011222333456777777777777765443
No 221
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=49.31 E-value=8.3 Score=35.16 Aligned_cols=19 Identities=26% Similarity=0.501 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 021065 258 NELETQAGQLRAEHSSLLK 276 (318)
Q Consensus 258 ~eLE~qV~~L~~EN~~L~~ 276 (318)
.....++..|+.||..|++
T Consensus 39 ~~~~~~~~~l~~En~rLr~ 57 (255)
T 2j5u_A 39 AQLESEVADLKKENKDLKE 57 (255)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444443
No 222
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=49.25 E-value=64 Score=22.49 Aligned_cols=48 Identities=13% Similarity=0.082 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 253 KQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIE 300 (318)
Q Consensus 253 Kk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~ 300 (318)
...++.+++.++..++.+-..+..++..+...+..+..+=..|+.++.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~qi~ 57 (60)
T 3htk_A 10 LENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQNE 57 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555555555544444444443
No 223
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=49.19 E-value=29 Score=22.98 Aligned_cols=27 Identities=19% Similarity=0.214 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 280 DVNQKYDESAVNNRILKADIETLRAKL 306 (318)
Q Consensus 280 ~L~qk~~~l~~EN~~Lrael~~Lr~kl 306 (318)
.|..+...|..+|..|..++..|+.-|
T Consensus 5 QLEdkVEeLl~~~~~Le~eV~RL~~ll 31 (34)
T 2hy6_A 5 QLADAVEELASANYHLANAVARLAKAV 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 344455566677777777777776544
No 224
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=48.49 E-value=39 Score=26.38 Aligned_cols=26 Identities=19% Similarity=0.364 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 256 HLNELETQAGQLRAEHSSLLKGLTDV 281 (318)
Q Consensus 256 ~l~eLE~qV~~L~~EN~~L~~~l~~L 281 (318)
++.+.+.+...|+..|..|..++++|
T Consensus 50 r~~e~e~r~k~le~~n~~l~~riqEL 75 (83)
T 4ath_A 50 RAKDLENRQKKLEHANRHLLLRVQEL 75 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 33444444444444444444444443
No 225
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=48.48 E-value=60 Score=28.40 Aligned_cols=37 Identities=16% Similarity=0.100 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 268 RAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (318)
Q Consensus 268 ~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~ 304 (318)
+.....|......+......++.+-..|...+..|..
T Consensus 48 ~~~~~~l~~g~~~L~~~~~~Le~~~~~L~~~i~~l~~ 84 (174)
T 2p22_A 48 ARFHEIIAIDKNHLRAVEQAIEQTMHSLNAQIDVLTA 84 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444444444444444
No 226
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=47.74 E-value=20 Score=28.35 Aligned_cols=53 Identities=11% Similarity=0.112 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 254 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKL 306 (318)
Q Consensus 254 k~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl 306 (318)
...+..+...+..|+.+.+.++..+....+.|+.|..=.-.|..+|.+.|.=|
T Consensus 36 ~~e~~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Le~EIatYrkLL 88 (95)
T 3mov_A 36 AKEKDNSRRMLTDKEREMAEIRDQMQQQLNDYEQLLDVKLALDMEISAYRKLL 88 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777788888888888888888888888888877777888888776543
No 227
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=47.65 E-value=31 Score=22.84 Aligned_cols=25 Identities=16% Similarity=0.198 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q 021065 290 VNNRILKADIETLRAKLYMFIEIFL 314 (318)
Q Consensus 290 ~EN~~Lrael~~Lr~kl~~~e~~v~ 314 (318)
.+|....++|.+|+++-..||.-|.
T Consensus 7 rKn~a~qqDIddlkrQN~~Le~Qir 31 (34)
T 1a93_B 7 RKNDTHQQDIDDLKRQNALLEQQVR 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhhHhhHHHHHHHHHHHHHHHH
Confidence 3444455555555555555554443
No 228
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=47.62 E-value=56 Score=31.76 Aligned_cols=59 Identities=17% Similarity=0.195 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 021065 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYD----------ESAVNNRILKADIETLRAKLYMFIEIFLG 315 (318)
Q Consensus 257 l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~----------~l~~EN~~Lrael~~Lr~kl~~~e~~v~~ 315 (318)
+.+|..+...+..+...|+.+...+.+++. .+..+-+.|+.++..|..++..+++.+..
T Consensus 32 ~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (425)
T 2dq3_A 32 VLELDKRRREIIKRLEALRSERNKLSKEIGKLKREGKDTTEIQNRVKELKEEIDRLEEELRKVEEELKN 100 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSSCSCTTTSTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444433 33455566666777777777666665543
No 229
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=46.65 E-value=1.2e+02 Score=27.59 Aligned_cols=39 Identities=5% Similarity=0.049 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 021065 277 GLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFLG 315 (318)
Q Consensus 277 ~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~ 315 (318)
++...+..+..+..+-..+++++..++..+..++..+.+
T Consensus 116 ~~~~a~~~~~~a~a~~~~~~~~l~~~~~~l~~a~~~l~~ 154 (369)
T 4dk0_A 116 TLNTAKATLNNAKAEMDVVQENIKQAEIEVNTAETNLGY 154 (369)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344445555556666666677777777777777665543
No 230
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=46.64 E-value=1.2e+02 Score=24.68 Aligned_cols=32 Identities=16% Similarity=0.226 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 021065 285 YDESAVNNRILKADIETLRAKLYMFIEIFLGE 316 (318)
Q Consensus 285 ~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~~ 316 (318)
+.+--.|=+.+-+++++|-.|+.-+|..|.|+
T Consensus 71 I~ENhkEMKq~aaqsaaLlsk~yh~ene~ar~ 102 (114)
T 2xzr_A 71 INENHKEMKQIEDKIEEILSKIYHIENEIARI 102 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 33333334445566666666666666666654
No 231
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=46.32 E-value=70 Score=24.37 Aligned_cols=31 Identities=10% Similarity=0.192 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 273 SLLKGLTDVNQKYDESAVNNRILKADIETLR 303 (318)
Q Consensus 273 ~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr 303 (318)
..-..+..+..++.....+.+.|+.++..++
T Consensus 37 ~kd~~I~eLEk~L~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 37 QRDALIDELELELDQKDELIQMLQNELDKYR 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333444444444555555555555554443
No 232
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=46.30 E-value=1.1e+02 Score=24.11 Aligned_cols=37 Identities=11% Similarity=0.127 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVN 291 (318)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~E 291 (318)
..+..||.++..++.+-+....+...|-.-...|..|
T Consensus 44 ~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Le~E 80 (95)
T 3mov_A 44 RMLTDKEREMAEIRDQMQQQLNDYEQLLDVKLALDME 80 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555444444443333333333
No 233
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=45.78 E-value=1.2e+02 Score=27.09 Aligned_cols=31 Identities=23% Similarity=0.488 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDES 288 (318)
Q Consensus 258 ~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l 288 (318)
..|+.++..|..+|..|...+..+..++..+
T Consensus 135 ~~~~~~~~~L~~e~~~l~~~~~~l~~qlE~~ 165 (213)
T 1ik9_A 135 AENQAKNEHLQKENERLLRDWNDVQGRFEKA 165 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555555555555555555555544
No 234
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=45.68 E-value=56 Score=28.42 Aligned_cols=21 Identities=19% Similarity=0.216 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 021065 284 KYDESAVNNRILKADIETLRA 304 (318)
Q Consensus 284 k~~~l~~EN~~Lrael~~Lr~ 304 (318)
++..+..|-..|++++...|.
T Consensus 114 kI~aL~~Ei~~Lr~qL~~~R~ 134 (175)
T 3lay_A 114 KINAVAKEMESLGQKLDEQRV 134 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555554
No 235
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=45.29 E-value=93 Score=23.81 Aligned_cols=15 Identities=0% Similarity=0.155 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHHH
Q 021065 274 LLKGLTDVNQKYDES 288 (318)
Q Consensus 274 L~~~l~~L~qk~~~l 288 (318)
|...+..|+-+|..|
T Consensus 12 LE~sld~LQTrfARL 26 (74)
T 3swf_A 12 MESSVDLLQTRFARI 26 (74)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 236
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=45.09 E-value=1.5e+02 Score=25.44 Aligned_cols=23 Identities=13% Similarity=0.080 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 021065 288 SAVNNRILKADIETLRAKLYMFI 310 (318)
Q Consensus 288 l~~EN~~Lrael~~Lr~kl~~~e 310 (318)
+..+-..|++++..|.+.+..++
T Consensus 85 ~ea~la~l~~~~~~LeAE~aKLe 107 (146)
T 2xnx_M 85 AKLELDQLSSEKEQLTIEKAKLE 107 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHhhHHHHHHHHHHHH
Confidence 33333333333444444444443
No 237
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=45.02 E-value=99 Score=23.42 Aligned_cols=16 Identities=6% Similarity=0.057 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 021065 285 YDESAVNNRILKADIE 300 (318)
Q Consensus 285 ~~~l~~EN~~Lrael~ 300 (318)
+..++.+=..+|.++.
T Consensus 35 i~~lE~eL~~~r~e~~ 50 (84)
T 1gk4_A 35 IGRLQDEIQNMKEEMA 50 (84)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333444444444433
No 238
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=44.54 E-value=90 Score=22.82 Aligned_cols=22 Identities=5% Similarity=0.185 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 021065 286 DESAVNNRILKADIETLRAKLY 307 (318)
Q Consensus 286 ~~l~~EN~~Lrael~~Lr~kl~ 307 (318)
.....|...||..+..|+..|.
T Consensus 52 ~~~k~Ei~elrr~iq~L~~el~ 73 (77)
T 3trt_A 52 RQAKQESTEYRRQVQSLTMEVD 73 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443
No 239
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=44.48 E-value=2.4e+02 Score=27.63 Aligned_cols=17 Identities=18% Similarity=0.198 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 021065 295 LKADIETLRAKLYMFIE 311 (318)
Q Consensus 295 Lrael~~Lr~kl~~~e~ 311 (318)
++.+|..|..+|..++.
T Consensus 117 ~~~~i~~l~~~i~~l~~ 133 (409)
T 1m1j_C 117 NSNKITQLKQKIAQLES 133 (409)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 33444444444444443
No 240
>1grj_A GREA protein; transcript elongation factor, transcript cleavage factor, transcription regulation; 2.20A {Escherichia coli} SCOP: a.2.1.1 d.26.1.2
Probab=44.45 E-value=85 Score=26.36 Aligned_cols=53 Identities=13% Similarity=0.288 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 257 LNELETQAGQLRA-EHSSLLKGLTDVN--------QKYDESAVNNRILKADIETLRAKLYMF 309 (318)
Q Consensus 257 l~eLE~qV~~L~~-EN~~L~~~l~~L~--------qk~~~l~~EN~~Lrael~~Lr~kl~~~ 309 (318)
++.|+.+++.|+. +-..+...+..++ ..|+....+...+..++..|..+|..+
T Consensus 11 ~~~L~~El~~L~~~~rp~i~~~i~~A~~~gDlsENaeY~aak~~q~~~e~ri~~Le~~L~~a 72 (158)
T 1grj_A 11 AEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEGRIKDIEAKLSNA 72 (158)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHTTCCGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHE
T ss_pred HHHHHHHHHHHHhccchhhHhhHHHHHhcccccccchhhhHHHHHHHHHHHHHHHHHHHhhC
Confidence 4556666666655 4444544554433 234444444555555555555555443
No 241
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=44.37 E-value=29 Score=22.95 Aligned_cols=27 Identities=7% Similarity=0.236 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 279 TDVNQKYDESAVNNRILKADIETLRAK 305 (318)
Q Consensus 279 ~~L~qk~~~l~~EN~~Lrael~~Lr~k 305 (318)
..|..++..|..+|..|..++..|+.-
T Consensus 4 nQLEdKvEeLl~~~~~L~~EV~RLk~l 30 (34)
T 2bni_A 4 KQIEDKLEEILSKGHHICNELARIKKL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 344555566667777777777766653
No 242
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=44.09 E-value=1.6e+02 Score=25.60 Aligned_cols=24 Identities=8% Similarity=-0.006 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 021065 291 NNRILKADIETLRAKLYMFIEIFL 314 (318)
Q Consensus 291 EN~~Lrael~~Lr~kl~~~e~~v~ 314 (318)
+-...++++..++++|..++..+.
T Consensus 106 ~~~~a~a~l~~a~a~l~~a~~~l~ 129 (277)
T 2f1m_A 106 DAQQANAAVTAAKAAVETARINLA 129 (277)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333444555555555555555443
No 243
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=43.89 E-value=1.1e+02 Score=23.52 Aligned_cols=14 Identities=29% Similarity=0.418 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHHH
Q 021065 260 LETQAGQLRAEHSS 273 (318)
Q Consensus 260 LE~qV~~L~~EN~~ 273 (318)
|..|+..+..+|..
T Consensus 5 Lr~qi~~l~~e~~~ 18 (86)
T 3swk_A 5 LRRQVDQLTNDKAR 18 (86)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHH
Confidence 33333333333333
No 244
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=43.57 E-value=1.5e+02 Score=25.62 Aligned_cols=9 Identities=33% Similarity=0.294 Sum_probs=0.0
Q ss_pred hhhhhHHHH
Q 021065 121 KLDLACAAV 129 (318)
Q Consensus 121 kL~~~~AAv 129 (318)
||-++++|+
T Consensus 30 k~~la~~al 38 (175)
T 3lay_A 30 KSAIALIAL 38 (175)
T ss_dssp ---------
T ss_pred HHHHHHHHH
Confidence 444444444
No 245
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=43.12 E-value=27 Score=25.56 Aligned_cols=58 Identities=14% Similarity=0.207 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhhh
Q 021065 258 NELETQAGQLRAEHSSLL--KGLTDVNQKYDESAVNNRIL--KADIETLRAKLYMFIEIFLG 315 (318)
Q Consensus 258 ~eLE~qV~~L~~EN~~L~--~~l~~L~qk~~~l~~EN~~L--rael~~Lr~kl~~~e~~v~~ 315 (318)
..||.+|..|+.....|- .++++|..++..|...-..| --++......++.+|+.|+.
T Consensus 5 kaleekvkaleekvkalggggrieelkkkweelkkkieelggggevkkveeevkkleeeikk 66 (67)
T 1lq7_A 5 KALEEKVKALEEKVKALGGGGRIEELKKKWEELKKKIEELGGGGEVKKVEEEVKKLEEEIKK 66 (67)
T ss_dssp HHHHHHHHHHHHHHHHSCCSSSHHHHHHHHHHHHHHHHHTTSSSTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhc
Confidence 456666666665544332 23444444444333222222 11233345666777776664
No 246
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=42.47 E-value=43 Score=22.02 Aligned_cols=24 Identities=13% Similarity=0.094 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 281 VNQKYDESAVNNRILKADIETLRA 304 (318)
Q Consensus 281 L~qk~~~l~~EN~~Lrael~~Lr~ 304 (318)
|..+...+..+|..|..++..|+.
T Consensus 5 LEdKVEell~~~~~le~EV~Rl~~ 28 (33)
T 2wq1_A 5 LEDKIEENTSKIYHNTNEIARNTK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHH
Confidence 333444455555555555555554
No 247
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=42.36 E-value=30 Score=22.88 Aligned_cols=26 Identities=8% Similarity=0.170 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 280 DVNQKYDESAVNNRILKADIETLRAK 305 (318)
Q Consensus 280 ~L~qk~~~l~~EN~~Lrael~~Lr~k 305 (318)
.|..+...|..+|..|..++..|+.-
T Consensus 5 QLEdKVEeLl~~n~~Le~EV~RLk~L 30 (34)
T 1uo4_A 5 QIEDKGEEILSKLYHIENELARIKKL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 44445555666666666666666543
No 248
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=42.17 E-value=55 Score=27.02 Aligned_cols=35 Identities=6% Similarity=0.024 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021065 280 DVNQKYDESAVNNRILKADIETLRAKLYMFIEIFL 314 (318)
Q Consensus 280 ~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~ 314 (318)
.|.++...+..+-..|+..+..|..++...++.++
T Consensus 99 ~l~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~~ 133 (148)
T 3gpv_A 99 LMKQQEANVLQLIQDTEKNLKKIQQKIAKYEDEIS 133 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444455555555555555555443
No 249
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=41.66 E-value=39 Score=33.03 Aligned_cols=45 Identities=13% Similarity=0.093 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMF 309 (318)
Q Consensus 258 ~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~ 309 (318)
.+|..++..|+.+...|..+.+. +..+.+.|+.++..++.+++.+
T Consensus 45 ~dl~~~lk~le~~~~~L~~e~e~-------l~~~~~~~~~e~~~~~ee~~~l 89 (428)
T 4b4t_K 45 SDIYFKLKKLEKEYELLTLQEDY-------IKDEQRHLKRELKRAQEEVKRI 89 (428)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444333 3333444555555555555544
No 250
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=41.63 E-value=1.2e+02 Score=23.37 Aligned_cols=35 Identities=17% Similarity=0.176 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 021065 281 VNQKYDESAVNNRILKADIETLRAKLYMFIEIFLG 315 (318)
Q Consensus 281 L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~ 315 (318)
|..+...+..+-..|..++..|+.++..++..+..
T Consensus 75 L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~ 109 (117)
T 2zqm_A 75 LKEKIETLEVRLNALERQEKKLNEKLKELTAQIQS 109 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555555555554443
No 251
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=41.63 E-value=22 Score=22.13 Aligned_cols=14 Identities=14% Similarity=0.370 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHH
Q 021065 267 LRAEHSSLLKGLTD 280 (318)
Q Consensus 267 L~~EN~~L~~~l~~ 280 (318)
|...|..|+.++..
T Consensus 5 lkqknarlkqeiaa 18 (28)
T 3ra3_B 5 LKQKNARLKQEIAA 18 (28)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHH
Confidence 33334444443333
No 252
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=41.56 E-value=18 Score=27.22 Aligned_cols=14 Identities=14% Similarity=0.280 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHH
Q 021065 254 QAHLNELETQAGQL 267 (318)
Q Consensus 254 k~~l~eLE~qV~~L 267 (318)
...+.+|..-|-.+
T Consensus 28 n~~f~~Lr~lvP~~ 41 (80)
T 1hlo_A 28 KDSFHSLRDSVPSL 41 (80)
T ss_dssp HHHHHHHHHHSGGG
T ss_pred HHHHHHHHHHCcCC
Confidence 45566666655543
No 253
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=41.53 E-value=60 Score=26.38 Aligned_cols=46 Identities=15% Similarity=0.179 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 259 ELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (318)
Q Consensus 259 eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~ 304 (318)
.|-.+.-..+.|...|+.++..|+.++.....-...|......|+.
T Consensus 8 ~~~~~~~~~e~e~~~l~~~~~el~~~l~~~~~~~~e~g~~~~~lq~ 53 (125)
T 1joc_A 8 ALLERCLKGEGEIEKLQTKVLELQRKLDNTTAAVQELGRENQSLQI 53 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc
Confidence 3444455566677777777777777776655555555444444443
No 254
>2lz1_A Nuclear factor erythroid 2-related factor 2; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=41.27 E-value=0.48 Score=37.82 Aligned_cols=23 Identities=30% Similarity=0.304 Sum_probs=20.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHH
Q 021065 232 DDKRARRMLSNRESARRSRRRKQ 254 (318)
Q Consensus 232 e~KR~RR~lsNRESArRSR~RKk 254 (318)
-.+..||.-+||.+|+++|+||.
T Consensus 64 lIrdiRRRgKNkvAAqnCRKRKl 86 (90)
T 2lz1_A 64 LIRDIRRRGKNKVAAQNCRKRKL 86 (90)
T ss_dssp HHHHHHHHSCSCCCCCCCSCCCC
T ss_pred HHHHHHHhhhhHHHHHHcchhhc
Confidence 45778899999999999999984
No 255
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=41.02 E-value=1.3e+02 Score=23.47 Aligned_cols=23 Identities=17% Similarity=0.264 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 021065 262 TQAGQLRAEHSSLLKGLTDVNQK 284 (318)
Q Consensus 262 ~qV~~L~~EN~~L~~~l~~L~qk 284 (318)
.+|..|+.+|..|..++..+.++
T Consensus 23 dKVR~LEqqN~~Le~~i~~l~~~ 45 (93)
T 3s4r_A 23 DKVRFLEQQNKILLAELEQLKGQ 45 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Confidence 34555555555555555555443
No 256
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=40.94 E-value=1.5e+02 Score=24.22 Aligned_cols=17 Identities=29% Similarity=0.286 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHhh
Q 021065 297 ADIETLRAKLYMFIEIF 313 (318)
Q Consensus 297 ael~~Lr~kl~~~e~~v 313 (318)
..+..|+.||..+..++
T Consensus 82 ~~Vsalq~KiaeLKrqL 98 (107)
T 2k48_A 82 AAVSTLETKLGELKRQL 98 (107)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34445555555555444
No 257
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=40.86 E-value=95 Score=27.97 Aligned_cols=39 Identities=18% Similarity=0.233 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 264 AGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETL 302 (318)
Q Consensus 264 V~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~L 302 (318)
+++|+++.-....+..+|...+..+..||..|+..+..|
T Consensus 32 ~~~~~a~~~s~~s~~~dl~~s~~~l~ae~~~L~~~l~kL 70 (206)
T 3oa7_A 32 LQQLRVNYGSFVSEYNDLTKSHNTLSKELDNLRSRFGNL 70 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHc
Confidence 344454444444555555555555555555544444444
No 258
>3csx_A Putative uncharacterized protein; metalloprotein, nitrogen fixation, cyanobacteria, circadian rhythms, metal binding protein, unknown function; 1.84A {Cyanothece}
Probab=40.68 E-value=1.1e+02 Score=23.87 Aligned_cols=10 Identities=40% Similarity=0.414 Sum_probs=4.5
Q ss_pred HHHHHHHHHH
Q 021065 232 DDKRARRMLS 241 (318)
Q Consensus 232 e~KR~RR~ls 241 (318)
+.|+.-|+++
T Consensus 19 eLkkevkKL~ 28 (81)
T 3csx_A 19 DLKKKVRKLN 28 (81)
T ss_dssp CHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 259
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=40.40 E-value=1.1e+02 Score=30.65 Aligned_cols=20 Identities=5% Similarity=-0.102 Sum_probs=13.8
Q ss_pred HHH-HHHHHHHHHHHHHhhhh
Q 021065 296 KAD-IETLRAKLYMFIEIFLG 315 (318)
Q Consensus 296 rae-l~~Lr~kl~~~e~~v~~ 315 (318)
+++ +..|..+|+.+|+.++.
T Consensus 109 ~~~~~~~l~~~i~~le~~~~~ 129 (484)
T 3lss_A 109 LKQLSKDLSDQVAGLAKEAQQ 129 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 666 77777777777766654
No 260
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=40.28 E-value=1.1e+02 Score=30.97 Aligned_cols=58 Identities=16% Similarity=0.217 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021065 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDES----AVNNRILKADIETLRAKLYMFIEIFL 314 (318)
Q Consensus 257 l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l----~~EN~~Lrael~~Lr~kl~~~e~~v~ 314 (318)
+.++..+-..++.||..+++++.....+|... ..+....++++.+..++++.-++-.+
T Consensus 36 ~ae~~a~n~~i~aeNeaikkrNa~aka~Ye~~l~kY~~dlakY~~~~AeY~~kl~aYe~~~~ 97 (497)
T 3iox_A 36 VAANNAANAALTAENTAIKKRNADAKADYEAKLAKYQADLAKYQKDLADYPVKLKAYEDEQT 97 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666667777777776666665543 23333346667777777776665544
No 261
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=40.25 E-value=93 Score=30.60 Aligned_cols=62 Identities=10% Similarity=-0.029 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhhc
Q 021065 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAV---NNRILKADIETLRAKLYMFIEIFLGE 316 (318)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~---EN~~Lrael~~Lr~kl~~~e~~v~~~ 316 (318)
..+.+|..+...+..+...|+.+...+.+++..+.. +-..|++++..|..+|+.+|+.++.+
T Consensus 31 ~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 95 (455)
T 2dq0_A 31 DEILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEEL 95 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666667777777777766666665432 23567888888888888888776543
No 262
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=40.20 E-value=1.3e+02 Score=23.26 Aligned_cols=12 Identities=25% Similarity=0.504 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHH
Q 021065 256 HLNELETQAGQL 267 (318)
Q Consensus 256 ~l~eLE~qV~~L 267 (318)
.+..|+..+..|
T Consensus 32 ~i~~l~~~l~~l 43 (112)
T 1l8d_A 32 KIGDLKTAIEEL 43 (112)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 444444444443
No 263
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=40.05 E-value=68 Score=25.96 Aligned_cols=28 Identities=21% Similarity=0.167 Sum_probs=12.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 238 RMLSNRESARRSRRRKQAHLNELETQAG 265 (318)
Q Consensus 238 R~lsNRESArRSR~RKk~~l~eLE~qV~ 265 (318)
|+...-.+-|+-|.+=...+.+|..-|-
T Consensus 27 kr~~Hn~~ERrRR~~In~~~~~L~~lvP 54 (118)
T 4ati_A 27 KKDNHNLIERRRRFNINDRIKELGTLIP 54 (118)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333444555555554555566555433
No 264
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=39.84 E-value=79 Score=28.97 Aligned_cols=64 Identities=14% Similarity=0.243 Sum_probs=39.3
Q ss_pred HHHHHHHHhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 234 KRARRMLSNRESA-RRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETL 302 (318)
Q Consensus 234 KR~RR~lsNRESA-rRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~L 302 (318)
|-.=.-|+|||.. +.+|.||+.- ..++..|+... --..++..|++++..++.+|-+..+++..+
T Consensus 93 R~~LK~IR~~E~svqp~R~~R~~l----~~~I~kLk~k~-P~s~kl~~LeqELvraEae~lvaEAqL~n~ 157 (234)
T 3plt_A 93 RVTLKSIRNIEASVQPSRDRKEKI----TDEIAHLKYKD-PQSTKIPVLEQELVRAEAESLVAEAQLSNI 157 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHC-TTCTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHH----HHHHHHHhccC-CCCchHHHHHHHHHHHHHHhhHHHHHHHHh
Confidence 4444567888866 5555555443 33333444321 123567788888888888888877777654
No 265
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=39.51 E-value=94 Score=28.24 Aligned_cols=30 Identities=7% Similarity=0.010 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021065 285 YDESAVNNRILKADIETLRAKLYMFIEIFL 314 (318)
Q Consensus 285 ~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~ 314 (318)
+..+..+-..+++++..+++++..++..+.
T Consensus 117 ~~~a~~~~~~a~a~~~~~~~~l~~~~~~l~ 146 (369)
T 4dk0_A 117 LNTAKATLNNAKAEMDVVQENIKQAEIEVN 146 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555556666666666666554443
No 266
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=39.38 E-value=57 Score=26.81 Aligned_cols=32 Identities=16% Similarity=0.200 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYD 286 (318)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~ 286 (318)
+.+.+|+.+|+.++..|+.|+.-...-.++|.
T Consensus 4 ~e~~~l~~qi~~~ekr~~RLKevF~~ks~eFR 35 (123)
T 4dzo_A 4 KEVAELKKQVESAELKNQRLKEVFQTKIQEFR 35 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666666555544444333
No 267
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=38.85 E-value=1.3e+02 Score=23.04 Aligned_cols=14 Identities=21% Similarity=0.401 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHH
Q 021065 293 RILKADIETLRAKL 306 (318)
Q Consensus 293 ~~Lrael~~Lr~kl 306 (318)
..|.++++.|...|
T Consensus 66 ~dLE~kvesL~eEl 79 (86)
T 3swk_A 66 LDLERKVESLQEEI 79 (86)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444433
No 268
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=38.39 E-value=12 Score=30.53 Aligned_cols=20 Identities=20% Similarity=0.233 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 021065 286 DESAVNNRILKADIETLRAK 305 (318)
Q Consensus 286 ~~l~~EN~~Lrael~~Lr~k 305 (318)
..+..+|..|...+.+|...
T Consensus 94 ~~l~~~n~~L~~riqeLE~~ 113 (118)
T 4ati_A 94 KKLEHANRHLLLRVQELEMQ 113 (118)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666655543
No 269
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=38.11 E-value=80 Score=27.28 Aligned_cols=18 Identities=33% Similarity=0.431 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 021065 251 RRKQAHLNELETQAGQLR 268 (318)
Q Consensus 251 ~RKk~~l~eLE~qV~~L~ 268 (318)
++|++||.+|..|...++
T Consensus 22 ~~K~~~LqeL~~Q~vafk 39 (155)
T 2aze_A 22 KQKQSQLQELILQQIAFK 39 (155)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 678899999998866654
No 270
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=37.93 E-value=18 Score=25.92 Aligned_cols=21 Identities=19% Similarity=0.260 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 021065 254 QAHLNELETQAGQLRAEHSSL 274 (318)
Q Consensus 254 k~~l~eLE~qV~~L~~EN~~L 274 (318)
..|+..||.+|..|+.....|
T Consensus 48 ~~~~~~Le~ri~~Le~~l~~l 68 (72)
T 2er8_A 48 RARNEAIEKRFKELTRTLTNL 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 378888888888888665544
No 271
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=37.88 E-value=1.4e+02 Score=23.18 Aligned_cols=42 Identities=12% Similarity=0.170 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 254 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKL 306 (318)
Q Consensus 254 k~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl 306 (318)
-.|+..|..++..+..+.. +...++..|+.|.-.+.+|....
T Consensus 38 vdYI~~Lq~e~~r~~e~e~-----------r~k~le~~n~~l~~riqELE~qa 79 (83)
T 4ath_A 38 VDYIRKLQREQQRAKDLEN-----------RQKKLEHANRHLLLRVQELEMQA 79 (83)
T ss_dssp HHHHHHHHHTHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-----------HHHHhhhhhHHHHHHHHHHHHHH
Confidence 4777777666655544333 34457778888877777776543
No 272
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=36.97 E-value=1.1e+02 Score=27.12 Aligned_cols=33 Identities=9% Similarity=0.083 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDE 287 (318)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~ 287 (318)
+.+..+=..+..|+.+|..|.++++.|+++.+.
T Consensus 145 elid~~ld~~~~L~~~n~~LqkeNeRL~~E~n~ 177 (184)
T 3w03_C 145 ELICYCLDTIAENQAKNEHLQKENERLLRDWND 177 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577778888888888888777776666655543
No 273
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=36.76 E-value=83 Score=24.60 Aligned_cols=65 Identities=15% Similarity=0.235 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC
Q 021065 254 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFLGENG 318 (318)
Q Consensus 254 k~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~~~~ 318 (318)
+..|..|+..|..|...+..+.........--..+..-....+.....++.+|+.++..+...-|
T Consensus 18 ~~~i~~i~~~v~~l~~~~~~~L~~~~~~~~~~~~l~~l~~~i~~~a~~ik~~Lk~l~~~~~~~~~ 82 (127)
T 1ez3_A 18 RGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEG 82 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
No 274
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=36.71 E-value=1.4e+02 Score=27.07 Aligned_cols=39 Identities=13% Similarity=0.170 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 273 SLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIE 311 (318)
Q Consensus 273 ~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~ 311 (318)
.++.++..|.+++.....|+..++++++..|..+..+.+
T Consensus 175 ~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~ 213 (228)
T 3q0x_A 175 EVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLRE 213 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444455555666666666666666555554
No 275
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=36.32 E-value=2.4e+02 Score=28.68 Aligned_cols=73 Identities=25% Similarity=0.277 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH-HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 233 DKRARRMLSNRESARRSRRRKQAHLNE-LETQAGQLRAEHSS-LLKGLTD-VNQKYDESAVNNRILKADIETLRAK 305 (318)
Q Consensus 233 ~KR~RR~lsNRESArRSR~RKk~~l~e-LE~qV~~L~~EN~~-L~~~l~~-L~qk~~~l~~EN~~Lrael~~Lr~k 305 (318)
..+++....+.+.-.||=+.....|.+ ||.+-+.+..|+.. |..++.. -.--......+.+.|+.+|..|+.+
T Consensus 507 ~~~~~~~~~~~~~~~~~~~e~~~ql~~kme~~~~~~~~e~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ei~~l~~~ 582 (592)
T 1f5n_A 507 HEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQTK 582 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 276
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=36.31 E-value=81 Score=25.99 Aligned_cols=30 Identities=10% Similarity=0.108 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 259 ELETQAGQLRAEHSSLLKGLTDVNQKYDES 288 (318)
Q Consensus 259 eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l 288 (318)
+|..+|..|..++..|.+++..|+.++...
T Consensus 29 ~l~~~v~~l~~e~k~l~ke~~~l~~~~a~~ 58 (171)
T 2zvf_A 29 KLPKTVERFFEEWKDQRKEIERLKSVIADL 58 (171)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666666666666666555443
No 277
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=36.30 E-value=70 Score=24.00 Aligned_cols=32 Identities=22% Similarity=0.287 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 251 RRKQAHLNELETQAGQLRAEHSSLLKGLTDVN 282 (318)
Q Consensus 251 ~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~ 282 (318)
..|...+.+||..+..-..++..|+.++..+.
T Consensus 21 ~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~q 52 (67)
T 1zxa_A 21 MLKEERIKELEKRLSEKEEEIQELKRKLHKCQ 52 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667788888888887777777777766543
No 278
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=36.18 E-value=1.1e+02 Score=21.35 Aligned_cols=42 Identities=10% Similarity=0.180 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 267 LRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIE 311 (318)
Q Consensus 267 L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~ 311 (318)
|+.....|...+..|+-++..+.+|...-.. .|.++|..+|.
T Consensus 3 lEekv~~Le~~ld~LqTr~ArLlae~~ssq~---KlKqRit~lE~ 44 (46)
T 3swy_A 3 LEEKVEQLGSSLDTLQTRFARLLAEYNATQM---KMKQRLSQLES 44 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHh
Confidence 3444444555555555555555544433322 24444444443
No 279
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=36.11 E-value=1.8e+02 Score=23.82 Aligned_cols=45 Identities=11% Similarity=0.174 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 263 QAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLY 307 (318)
Q Consensus 263 qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~ 307 (318)
+|..|+.+..-...-+..=+.--..+..|...|..++..|+.++.
T Consensus 63 ~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q~~ 107 (110)
T 2v4h_A 63 TVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFN 107 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHHHH
Confidence 344444444444444444344444555566666666666666553
No 280
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=35.98 E-value=20 Score=29.53 Aligned_cols=23 Identities=17% Similarity=0.070 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 021065 264 AGQLRAEHSSLLKGLTDVNQKYD 286 (318)
Q Consensus 264 V~~L~~EN~~L~~~l~~L~qk~~ 286 (318)
+++|..|.++|.-++..|++++.
T Consensus 10 ~EeLaaeL~kLqmENK~LKkkl~ 32 (110)
T 2oa5_A 10 YEEMVKEVERLKLENKTLKQKVK 32 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555555555555544443
No 281
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=35.94 E-value=35 Score=25.53 Aligned_cols=21 Identities=19% Similarity=0.207 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 021065 284 KYDESAVNNRILKADIETLRA 304 (318)
Q Consensus 284 k~~~l~~EN~~Lrael~~Lr~ 304 (318)
-+..|..++..|+.+++.|+.
T Consensus 58 YI~~L~~~~~~L~~e~~~L~~ 78 (80)
T 1hlo_A 58 YIQYMRRKNHTHQQDIDDLKR 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 344555555566655555554
No 282
>2js5_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural genomics, PSI-2, protein structure initiative; NMR {Methylococcus capsulatus}
Probab=35.69 E-value=1.4e+02 Score=22.59 Aligned_cols=14 Identities=7% Similarity=0.157 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHH
Q 021065 297 ADIETLRAKLYMFI 310 (318)
Q Consensus 297 ael~~Lr~kl~~~e 310 (318)
+++..++++|+.+|
T Consensus 52 ~~l~~ak~~L~~~~ 65 (71)
T 2js5_A 52 RQLDEFRKSTASLE 65 (71)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34445555555554
No 283
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=35.50 E-value=55 Score=23.23 Aligned_cols=35 Identities=14% Similarity=0.261 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAV 290 (318)
Q Consensus 256 ~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~ 290 (318)
.-..||.-|..|+..|..|.+.+..|...+..++.
T Consensus 18 enaklenivarlendnanlekdianlekdianler 52 (56)
T 3he4_A 18 ENAKLENIVARLENDNANLEKDIANLEKDIANLER 52 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcchHHHHHHHHhcccchHHHHHHHHHHHHHHHHH
Confidence 34567788888888888888888776666555443
No 284
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=35.44 E-value=1.6e+02 Score=23.14 Aligned_cols=64 Identities=17% Similarity=0.388 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC
Q 021065 255 AHLNELETQAGQLRAEH----SSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFLGENG 318 (318)
Q Consensus 255 ~~l~eLE~qV~~L~~EN----~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~~~~ 318 (318)
+.+++||..+..+.... +.|..-+..+.+-|-.|...=..|-+++..+......+.+.+-+=||
T Consensus 26 ~~IeelE~~L~s~s~~~~~Tpq~L~~~l~~~h~~FiaLAa~l~~lH~~V~~~Ke~Yl~~rr~~~~d~~ 93 (93)
T 3t98_B 26 QQIEELENHLATQANNSHITPQDLSMAMQKIYQTFVALAAQLQSIHENVKVLKEQYLSYRKMFLGDAG 93 (93)
T ss_dssp HHHHHHHHHHSCHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 45777777776654311 34666666666666777777777777777777766666666554443
No 285
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=35.37 E-value=81 Score=22.95 Aligned_cols=23 Identities=22% Similarity=0.433 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 021065 258 NELETQAGQLRAEHSSLLKGLTD 280 (318)
Q Consensus 258 ~eLE~qV~~L~~EN~~L~~~l~~ 280 (318)
=.|..+|..|+.||..|.+.+++
T Consensus 13 YaLkDqV~eL~qe~k~m~k~lEe 35 (56)
T 2w6b_A 13 YALKDEVQELRQDNKKMKKSLEE 35 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667788888888877776654
No 286
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=35.09 E-value=1.7e+02 Score=23.33 Aligned_cols=46 Identities=26% Similarity=0.322 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 243 RESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDES 288 (318)
Q Consensus 243 RESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l 288 (318)
-++-+-||.-=..+-.+|+.-+..|+.+|..=.+++.+++.++...
T Consensus 13 Le~EK~S~eeL~kQk~eL~~~l~~l~~e~~~R~~~i~el~akidd~ 58 (101)
T 1d7m_A 13 LESEKVSREQLIKQKDQLNSLLASLESEGAEREKRLRELEAKLDET 58 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556655555567888888999999988888888888776654
No 287
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=34.80 E-value=2.5e+02 Score=25.11 Aligned_cols=18 Identities=22% Similarity=0.222 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 021065 294 ILKADIETLRAKLYMFIE 311 (318)
Q Consensus 294 ~Lrael~~Lr~kl~~~e~ 311 (318)
..++++..+++++..++.
T Consensus 125 ~~~a~l~~~~a~l~~a~a 142 (341)
T 3fpp_A 125 VKQAQIGTIDAQIKRNQA 142 (341)
T ss_dssp HTHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444443
No 288
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=34.65 E-value=1.2e+02 Score=21.52 Aligned_cols=18 Identities=11% Similarity=0.076 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 021065 263 QAGQLRAEHSSLLKGLTD 280 (318)
Q Consensus 263 qV~~L~~EN~~L~~~l~~ 280 (318)
++.+|..+.+.|..++..
T Consensus 5 ki~~Lss~V~~L~~kVdq 22 (52)
T 1jcd_A 5 KADQASSDAQTANAKADQ 22 (52)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444333333333333
No 289
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=34.62 E-value=3.4e+02 Score=26.54 Aligned_cols=44 Identities=5% Similarity=-0.079 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 021065 273 SLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFLGE 316 (318)
Q Consensus 273 ~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~~ 316 (318)
+|..++..+...+.....+-+.|+..+..++.+|..++..|..+
T Consensus 88 kml~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l 131 (409)
T 1m1j_C 88 KIIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQL 131 (409)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 34444444444444444555666777777777777777666543
No 290
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=34.60 E-value=1.6e+02 Score=22.79 Aligned_cols=60 Identities=13% Similarity=0.209 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH-HHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 021065 252 RKQAHLNELETQAGQLRAEHSSLLKGLTDV--NQ-KYDESAVNNRILKADIET-LRAKLYMFIE 311 (318)
Q Consensus 252 RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L--~q-k~~~l~~EN~~Lrael~~-Lr~kl~~~e~ 311 (318)
.|++.+.+.+..+.....-..+|.-++..+ -. .-..+...=+..|.++.. |+..++.+.+
T Consensus 31 ~Rk~~i~~ie~~ldEA~ell~qMelE~~~~~~p~~~R~~~~~klr~Yk~dl~~~lk~~lk~l~d 94 (97)
T 3onj_A 31 QRNTTLKHVEQQQDELFDLLDQMDVEVNNSIGDASERATYKAKLREWKKTIQSDIKRPLQSLVD 94 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344555555555555555555555555544 11 112333444445566666 6666665543
No 291
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=34.55 E-value=1.6e+02 Score=22.92 Aligned_cols=48 Identities=6% Similarity=0.136 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 260 LETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLY 307 (318)
Q Consensus 260 LE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~ 307 (318)
|..++..|+.+...|..+|..+..+...+..+-..+-.+...++..+.
T Consensus 23 L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~ 70 (96)
T 3q8t_A 23 LIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQL 70 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444433333333333333333
No 292
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=34.48 E-value=1.9e+02 Score=23.73 Aligned_cols=14 Identities=14% Similarity=0.124 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHh
Q 021065 299 IETLRAKLYMFIEI 312 (318)
Q Consensus 299 l~~Lr~kl~~~e~~ 312 (318)
+..|+.||..+..+
T Consensus 71 Vs~lq~KiaeLKrq 84 (113)
T 4fi5_A 71 AVSIQAKIDELKRQ 84 (113)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444433
No 293
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=34.45 E-value=35 Score=33.48 Aligned_cols=13 Identities=15% Similarity=0.391 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q 021065 294 ILKADIETLRAKL 306 (318)
Q Consensus 294 ~Lrael~~Lr~kl 306 (318)
.|+.++..++.++
T Consensus 57 ~~~~~~~~~~~~i 69 (434)
T 4b4t_M 57 VMLEKIKDNKEKI 69 (434)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 294
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=34.34 E-value=3e+02 Score=27.47 Aligned_cols=59 Identities=10% Similarity=0.019 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021065 254 QAHLNELETQAGQLRAEHSSLLKGLTDVN-----QKYDESAVNNRILKADIETLRAKLYMFIEI 312 (318)
Q Consensus 254 k~~l~eLE~qV~~L~~EN~~L~~~l~~L~-----qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~ 312 (318)
+..+.+++..|+.+..+..++...+.++. ..+..|...-..|+.+|..|..++..+.+.
T Consensus 134 Q~Qi~en~n~~~~~~~~~e~~~~~i~~~~~~~~~~~i~~L~~~~~~l~~ki~~l~~~~~~~~~~ 197 (464)
T 1m1j_B 134 QKQRKDNDIILSEYNTEMELHYNYIKDNLDNNIPSSLRVLRAVIDSLHKKIQKLENAIATQTDY 197 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhhHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555555555554444444443322 344555555567788888888888766654
No 295
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=34.19 E-value=1.8e+02 Score=23.27 Aligned_cols=19 Identities=21% Similarity=0.235 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 021065 296 KADIETLRAKLYMFIEIFL 314 (318)
Q Consensus 296 rael~~Lr~kl~~~e~~v~ 314 (318)
+..+..|+.||..+..+++
T Consensus 51 ~~~V~~lq~Ki~elkr~lA 69 (96)
T 2ic9_A 51 RAAVSALETKLGELKRELA 69 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445566666666655543
No 296
>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase, actin-bindi protein binding, cytoskeleton regulator; 2.70A {Drosophila melanogaster}
Probab=33.56 E-value=2.6e+02 Score=24.89 Aligned_cols=30 Identities=10% Similarity=0.243 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 251 RRKQAHLNELETQAGQLRAEHSSLLKGLTD 280 (318)
Q Consensus 251 ~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~ 280 (318)
.||.+-+.-|..++..|+.+-..|..++..
T Consensus 15 ~Kk~ELi~~L~~kL~~L~~eqe~l~ee~~~ 44 (190)
T 3thf_A 15 QKMDELIKHLNQKIVSLKREQQTISEECSA 44 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666667777777777776666655543
No 297
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=32.78 E-value=1.1e+02 Score=23.59 Aligned_cols=19 Identities=21% Similarity=0.501 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 021065 256 HLNELETQAGQLRAEHSSL 274 (318)
Q Consensus 256 ~l~eLE~qV~~L~~EN~~L 274 (318)
.++.+..++..|+.||..|
T Consensus 42 ~ie~~~eEi~~LkeEN~~L 60 (79)
T 2zxx_A 42 EIEQKDSEIARLRKENKDL 60 (79)
T ss_dssp HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555444
No 298
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=32.71 E-value=1.3e+02 Score=21.95 Aligned_cols=25 Identities=16% Similarity=0.165 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 258 NELETQAGQLRAEHSSLLKGLTDVN 282 (318)
Q Consensus 258 ~eLE~qV~~L~~EN~~L~~~l~~L~ 282 (318)
..|-.+|++|+..+.+...++..|+
T Consensus 21 ~~L~~kv~~Le~~c~e~eQEieRL~ 45 (58)
T 3a2a_A 21 VQLAAKIQHLEFSCSEKEQEIERLN 45 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667777666666666665543
No 299
>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=32.61 E-value=43 Score=25.51 Aligned_cols=37 Identities=22% Similarity=0.276 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021065 276 KGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEI 312 (318)
Q Consensus 276 ~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~ 312 (318)
+++.-+..=+..-++.|.+|-.++.-|...|..+|.-
T Consensus 29 k~~~Hl~~LL~EsEatnarL~eq~~lLK~EIRRlERn 65 (71)
T 3bbp_D 29 KSADHLNGLLRETEATNAILMEQIKLLKSEIRRLERN 65 (71)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhh
Confidence 3333333344444555555555555555555555543
No 300
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=32.48 E-value=3.7e+02 Score=26.40 Aligned_cols=42 Identities=12% Similarity=0.065 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 021065 274 LLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFLG 315 (318)
Q Consensus 274 L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~ 315 (318)
+..++..+..-+......-+.|+..+...+.+|..|++.|..
T Consensus 89 ml~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~L~~~v~~ 130 (411)
T 3ghg_C 89 MLEEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQ 130 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444443333333444455555555555555555555543
No 301
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=32.02 E-value=2.9e+02 Score=25.11 Aligned_cols=34 Identities=9% Similarity=0.113 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021065 280 DVNQKYDESAVNNRILKADIETLRAKLYMFIEIF 313 (318)
Q Consensus 280 ~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v 313 (318)
.+.-++-..+.+-..|+.++..|..+|...|.-|
T Consensus 109 ~~e~Rit~~e~~i~~l~~~v~~ld~~vt~~et~I 142 (242)
T 3c9i_A 109 ALNVRVTTAEGEIASLQTNVSALDGRVTTAENNI 142 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhheeecccccchhhhhhhhhhcccccccccch
Confidence 3333344444555556666666666665555544
No 302
>3brv_B NF-kappa-B essential modulator; NEMO, IKK-gamma, FIP3, ikkap1, NF-KB essential modulator, at binding, kinase, nucleotide-binding, phosphoprotein; 2.20A {Homo sapiens} PDB: 3brt_B
Probab=32.01 E-value=1.7e+02 Score=22.23 Aligned_cols=53 Identities=11% Similarity=0.008 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 021065 265 GQLRAEHSSLLKG----LTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFLGEN 317 (318)
Q Consensus 265 ~~L~~EN~~L~~~----l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~~~ 317 (318)
..|-.||..|+.. +..++.+|..|..=-..=|.+-+-|..|.+.+.+.|.+++
T Consensus 11 q~ll~EN~~LreAlkqsNq~mkeR~eeL~~wqekQkeErefl~~kf~EAr~lv~~L~ 67 (70)
T 3brv_B 11 QRCLEENQELRDAIRQSNQILRERCEELLHFQASQREEKEFLMCKFQEARKLVERLG 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455556555443 3345556666666666666677778888888888887764
No 303
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=31.58 E-value=1.3e+02 Score=20.76 Aligned_cols=21 Identities=19% Similarity=0.279 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 021065 287 ESAVNNRILKADIETLRAKLY 307 (318)
Q Consensus 287 ~l~~EN~~Lrael~~Lr~kl~ 307 (318)
.++.|-..|...+..|..|++
T Consensus 24 aleselqalekklaalksklq 44 (48)
T 1g6u_A 24 ALESELQALEKKLAALKSKLQ 44 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333433444444444444443
No 304
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=31.38 E-value=2.4e+02 Score=23.85 Aligned_cols=61 Identities=8% Similarity=-0.025 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021065 254 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFL 314 (318)
Q Consensus 254 k~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~ 314 (318)
..|...|+.+++.-..-...|..-....++.+......=...|..+..+..-.+.+...|.
T Consensus 85 ~eYn~rL~~E~~dR~~L~~~L~~~~~~~~~~l~e~e~~leeyK~Kl~rv~~vkkeL~~hi~ 145 (152)
T 4fla_A 85 AEYNGRLAAELEDRRQLARMLVEYTQNQKDVLSEKEKKLEEYKQKLARVTQVRKELKSHIQ 145 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3555556655555444444444443333334433333333333333333333334444443
No 305
>2f23_A Anti-cleavage anti-GREA transcription factor GFH1; anti-GREA GFH1 thermus thermophilus; 1.60A {Thermus thermophilus} SCOP: a.2.1.1 d.26.1.2 PDB: 2eul_A 3aoh_X* 3aoi_X* 2etn_A
Probab=31.37 E-value=1.9e+02 Score=24.05 Aligned_cols=24 Identities=17% Similarity=0.242 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 285 YDESAVNNRILKADIETLRAKLYM 308 (318)
Q Consensus 285 ~~~l~~EN~~Lrael~~Lr~kl~~ 308 (318)
|+....+-..|..++..|..+|..
T Consensus 48 y~aak~~q~~~e~ri~~L~~~L~~ 71 (156)
T 2f23_A 48 LEAAKQEKARIEARIDSLEDILSR 71 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444444445555555555443
No 306
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=30.83 E-value=2.5e+02 Score=23.94 Aligned_cols=21 Identities=14% Similarity=-0.001 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHhhhhccC
Q 021065 298 DIETLRAKLYMFIEIFLGENG 318 (318)
Q Consensus 298 el~~Lr~kl~~~e~~v~~~~~ 318 (318)
.+.+|.+-|+.-..||..+|+
T Consensus 99 KLrELEADLKEKDsMVe~LT~ 119 (167)
T 4gkw_A 99 KLGELEADLKEKDSMVESLTE 119 (167)
T ss_dssp HTHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHhHHhhhhHHHHHHHH
Confidence 455666777777777776663
No 307
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=30.74 E-value=1.1e+02 Score=19.71 Aligned_cols=25 Identities=24% Similarity=0.290 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 259 ELETQAGQLRAEHSSLLKGLTDVNQ 283 (318)
Q Consensus 259 eLE~qV~~L~~EN~~L~~~l~~L~q 283 (318)
.||+.+..|..-.++|.+++..|..
T Consensus 3 rlee~~r~l~~ivq~lq~r~drle~ 27 (32)
T 2akf_A 3 RLEEDVRNLNAIVQKLQERLDRLEE 27 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777777777777666544
No 308
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=30.55 E-value=1.7e+02 Score=26.31 Aligned_cols=40 Identities=13% Similarity=0.024 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 021065 276 KGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFLG 315 (318)
Q Consensus 276 ~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~ 315 (318)
.++...+.++..+..+-..+++++..+++.+..++..+.+
T Consensus 114 ~~~~~a~~~~~~~~a~l~~~~a~l~~a~a~l~~a~~~l~~ 153 (341)
T 3fpp_A 114 QDLDNAATEMAVKQAQIGTIDAQIKRNQASLDTAKTNLDY 153 (341)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHTTTTTTTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Confidence 3455555566666666677788888888888777665544
No 309
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=30.43 E-value=1.7e+02 Score=21.95 Aligned_cols=49 Identities=14% Similarity=0.141 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 249 SRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKA 297 (318)
Q Consensus 249 SR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lra 297 (318)
-|...+..+..||.++..++.+.+....+.+.|-.-...|+.|-...|.
T Consensus 6 e~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EIatYRk 54 (74)
T 2xv5_A 6 ERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRK 54 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677788888888888888888777777776666666666655543
No 310
>2yo3_A General control protein GCN4, putative inner MEMB protein, general control protein...; HANS motif, YADA-like head, ylhead; 2.00A {Saccharomyces cerevisiae}
Probab=30.28 E-value=1.6e+02 Score=27.52 Aligned_cols=50 Identities=6% Similarity=0.113 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 247 RRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILK 296 (318)
Q Consensus 247 rRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lr 296 (318)
......-..++.+|..+|..++.+-.++.+.++++.+++..++.+-.++|
T Consensus 208 ~~an~yTd~k~~~l~n~I~~V~n~~~q~~~~~~~~~~~~~~~~~~~~~~~ 257 (268)
T 2yo3_A 208 EEANTYTDQKMGEMNSKIKGVENKMKQIEDKIEEILSKIYHIENEIARIK 257 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555677777788888777777777777777777776666555443
No 311
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=29.94 E-value=2.2e+02 Score=23.04 Aligned_cols=7 Identities=14% Similarity=0.245 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 021065 259 ELETQAG 265 (318)
Q Consensus 259 eLE~qV~ 265 (318)
+|..++.
T Consensus 22 ~L~~ei~ 28 (106)
T 4e61_A 22 SLNEEIE 28 (106)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 312
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=29.52 E-value=97 Score=25.40 Aligned_cols=38 Identities=16% Similarity=0.353 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC
Q 021065 278 LTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFLGENG 318 (318)
Q Consensus 278 l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~~~~ 318 (318)
+.+|+.++..++..|.+||. --.+|.....+.|-.++|
T Consensus 6 ~~~l~~qi~~~ekr~~RLKe---vF~~ks~eFReav~~LlG 43 (123)
T 4dzo_A 6 VAELKKQVESAELKNQRLKE---VFQTKIQEFRKACYTLTG 43 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhC
Confidence 33444444444444444442 233444455555555554
No 313
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=28.87 E-value=2.9e+02 Score=25.20 Aligned_cols=30 Identities=7% Similarity=0.118 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQK 284 (318)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk 284 (318)
+.+.+|+.+++.|+.+...+..++..+..+
T Consensus 226 ~~l~~l~~~i~~l~~~l~~~~~~l~~~~~~ 255 (357)
T 3rrk_A 226 KAAARMKERARLAPEELVGIREEVARLSRE 255 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555444
No 314
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=28.74 E-value=2.1e+02 Score=22.34 Aligned_cols=11 Identities=36% Similarity=0.601 Sum_probs=5.7
Q ss_pred HHhHHHHHHHH
Q 021065 240 LSNRESARRSR 250 (318)
Q Consensus 240 lsNRESArRSR 250 (318)
..-||+|+.-+
T Consensus 22 FgKrEaA~Ee~ 32 (84)
T 1gmj_A 22 FGKREQAEEER 32 (84)
T ss_dssp HHHHHHHHHHH
T ss_pred cccHHHHhHHH
Confidence 34456665554
No 315
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=28.71 E-value=63 Score=21.81 Aligned_cols=21 Identities=24% Similarity=0.336 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 021065 255 AHLNELETQAGQLRAEHSSLL 275 (318)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~ 275 (318)
.++..|+.++..|+.|..+|.
T Consensus 15 eQi~~l~~kl~~LkeEKHQLF 35 (38)
T 2l5g_A 15 EQILKLEEKLLALQEEKHQLF 35 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555554443
No 316
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=28.58 E-value=4.7e+02 Score=26.41 Aligned_cols=21 Identities=14% Similarity=0.137 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 021065 262 TQAGQLRAEHSSLLKGLTDVN 282 (318)
Q Consensus 262 ~qV~~L~~EN~~L~~~l~~L~ 282 (318)
..|..++.+|..+..+++.++
T Consensus 34 ~~~ae~~a~n~~i~aeNeaik 54 (497)
T 3iox_A 34 AAVAANNAANAALTAENTAIK 54 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHHHHHHH
Confidence 333334444444433333333
No 317
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=28.47 E-value=2.8e+02 Score=23.68 Aligned_cols=21 Identities=24% Similarity=0.086 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 021065 292 NRILKADIETLRAKLYMFIEI 312 (318)
Q Consensus 292 N~~Lrael~~Lr~kl~~~e~~ 312 (318)
-+.|+.--..|..|-.|.|..
T Consensus 97 iRKLrELEADLKEKDsMVe~L 117 (167)
T 4gkw_A 97 MRKLGELEADLKEKDSMVESL 117 (167)
T ss_dssp HHHTHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHhHHhhhhHHHHHH
Confidence 344444444455555554443
No 318
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=28.44 E-value=3.8e+02 Score=25.32 Aligned_cols=64 Identities=19% Similarity=0.141 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 246 ARRSRRRKQAHLNELETQAGQLRA------EH--SSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMF 309 (318)
Q Consensus 246 ArRSR~RKk~~l~eLE~qV~~L~~------EN--~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~ 309 (318)
+++.=..|...++.|+..+..-+. +. -.-..-+.++.++++.+.+.-+.|.++.+.|.++|..+
T Consensus 321 ~~~~~~~k~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~q~~~~~~~~~~~ 392 (406)
T 4dyl_A 321 ATEMVFRRQEMVTQLQQELRNEEENTHPRERVQLLGKRQVLQEALQGLQVALCSQAKLQAQQELLQTKLEHL 392 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCTTCGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCcchHHHHHhHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhc
Confidence 444445566666666666654422 10 11223345667777888888888888888888888654
No 319
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=28.41 E-value=1.3e+02 Score=22.46 Aligned_cols=45 Identities=16% Similarity=0.121 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADI 299 (318)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael 299 (318)
.+.+++..++..|+.|-.--..+|.++.--++..+.++..|..+|
T Consensus 16 ~Ekdna~e~~e~lE~ERdFYf~KLRdiE~l~q~~e~e~~~l~~~I 60 (75)
T 3mtu_A 16 LDKENALDRAEQAEADKDFYFGKLRNIELICQENEGENDPVLQRI 60 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 345666666777777666666677766666666555554444333
No 320
>2p4v_A Transcription elongation factor GREB; transcript cleavage, GRE-factors, RNA polymerase; 2.60A {Escherichia coli}
Probab=28.37 E-value=2e+02 Score=24.04 Aligned_cols=52 Identities=15% Similarity=0.183 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHH-----HHHHH---HHHHHHHHHHHHHHHHhhhh
Q 021065 264 AGQLRAEHSSLLK-GLTDVNQKYDESAV-----NNRIL---KADIETLRAKLYMFIEIFLG 315 (318)
Q Consensus 264 V~~L~~EN~~L~~-~l~~L~qk~~~l~~-----EN~~L---rael~~Lr~kl~~~e~~v~~ 315 (318)
.+.|+.|...|+. +-..+.+.+..+.. ||... |.+...+..+|..+++++++
T Consensus 11 ~~~L~~EL~~L~~~~R~~i~~~i~~Ar~~GDlsENaeY~aak~~q~~~e~rI~~L~~~L~~ 71 (158)
T 2p4v_A 11 YEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYLTKCMEN 71 (158)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHHHSCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHhCCCcccchhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4566666666643 44444555554432 66543 67777888888888887765
No 321
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=28.24 E-value=2.1e+02 Score=22.29 Aligned_cols=31 Identities=6% Similarity=0.158 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 251 RRKQAHLNELETQAGQLRAEHSSLLKGLTDV 281 (318)
Q Consensus 251 ~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L 281 (318)
..|++.+.+.+..++..+.-..+|.-++..+
T Consensus 45 e~rk~~i~~ie~~ldEA~eLl~qMelE~r~~ 75 (102)
T 2qyw_A 45 EEKKKLVRDFDEKQQEANETLAEMEEELRYA 75 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3444556666666665555555554444443
No 322
>2cly_A ATP synthase B chain, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.52.1.1 PDB: 2wss_T*
Probab=28.14 E-value=1.8e+02 Score=26.11 Aligned_cols=34 Identities=6% Similarity=-0.126 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 262 TQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRIL 295 (318)
Q Consensus 262 ~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~L 295 (318)
..+-....||..|..+...++++..-...=-++|
T Consensus 122 ~~Lf~~~kEn~al~lEa~yre~~~~v~~EvK~rL 155 (214)
T 2cly_A 122 HYLFDVQRNNIAMALEVTYRERLHRVYREVKNRL 155 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333446666666666666555554444334444
No 323
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=28.03 E-value=1.7e+02 Score=21.03 Aligned_cols=30 Identities=13% Similarity=0.190 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 281 VNQKYDESAVNNRILKADIETLRAKLYMFI 310 (318)
Q Consensus 281 L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e 310 (318)
|-++...|..||.-||.++..=...|..+|
T Consensus 8 L~~QVe~Lk~ENshLrrEL~dNS~~lskLE 37 (54)
T 1deb_A 8 LLKQVEALKMENSNLRQELEDNSNHLTKLE 37 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHhhHHHHHHHH
Confidence 444455566666666666666555555555
No 324
>1fmh_B General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_B
Probab=27.89 E-value=1.2e+02 Score=19.41 Aligned_cols=27 Identities=15% Similarity=0.266 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 258 NELETQAGQLRAEHSSLLKGLTDVNQK 284 (318)
Q Consensus 258 ~eLE~qV~~L~~EN~~L~~~l~~L~qk 284 (318)
..|..+|..|...|-.-+.+++.|+.+
T Consensus 4 qalkkrvqalkarnyaakqkvqalrhk 30 (33)
T 1fmh_B 4 QALKKRVQALKARNYAAKQKVQALRHK 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 345555666666665555555555544
No 325
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=27.89 E-value=1.1e+02 Score=21.17 Aligned_cols=15 Identities=33% Similarity=0.355 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHH
Q 021065 266 QLRAEHSSLLKGLTD 280 (318)
Q Consensus 266 ~L~~EN~~L~~~l~~ 280 (318)
.|+.|.+.|.+++..
T Consensus 24 aleselqalekklaa 38 (48)
T 1g6u_A 24 ALESELQALEKKLAA 38 (48)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 326
>1qsd_A Protein (beta-tubulin binding post-chaperonin cofactor); four-helix-bundle, chaperone; 2.20A {Saccharomyces cerevisiae} SCOP: a.7.5.1
Probab=27.77 E-value=2e+02 Score=22.96 Aligned_cols=7 Identities=14% Similarity=0.415 Sum_probs=3.2
Q ss_pred HHHHHHh
Q 021065 236 ARRMLSN 242 (318)
Q Consensus 236 ~RR~lsN 242 (318)
.+|+++-
T Consensus 13 vkRL~KE 19 (106)
T 1qsd_A 13 LKRLTKE 19 (106)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3454444
No 327
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=27.77 E-value=2e+02 Score=21.76 Aligned_cols=46 Identities=15% Similarity=0.267 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIET 301 (318)
Q Consensus 256 ~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~ 301 (318)
.+..|+.+++.-+.+-..++.++..+.+.+..-..|=..||..+..
T Consensus 22 ~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~elrq~Lak 67 (72)
T 3cve_A 22 QLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTELRDNLAK 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3444444444444444445555555544444444444444444433
No 328
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=27.59 E-value=2.1e+02 Score=25.57 Aligned_cols=29 Identities=14% Similarity=0.330 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 256 HLNELETQAGQLRAEHSSLLKGLTDVNQK 284 (318)
Q Consensus 256 ~l~eLE~qV~~L~~EN~~L~~~l~~L~qk 284 (318)
.+..|+.++..|+.....|..++..++++
T Consensus 67 ~l~~l~~e~~el~d~~lR~~AEfeN~RkR 95 (213)
T 4ani_A 67 QIAELEAKLSEMEHRYLRLYADFENFRRR 95 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444333
No 329
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=27.45 E-value=1e+02 Score=20.32 Aligned_cols=24 Identities=17% Similarity=0.142 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 281 VNQKYDESAVNNRILKADIETLRA 304 (318)
Q Consensus 281 L~qk~~~l~~EN~~Lrael~~Lr~ 304 (318)
|.-+...+..+|..|..++..|+.
T Consensus 6 ledKvEel~~~~~~l~nEv~Rl~~ 29 (34)
T 2r2v_A 6 VADKLEEVASKLYHNANELARVAK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHH
Confidence 333444455555555555555554
No 330
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=27.26 E-value=2.1e+02 Score=22.00 Aligned_cols=19 Identities=21% Similarity=0.235 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 021065 296 KADIETLRAKLYMFIEIFL 314 (318)
Q Consensus 296 rael~~Lr~kl~~~e~~v~ 314 (318)
+..+..|+.||..+..+++
T Consensus 51 ~~~V~~lq~Ki~elkrqlA 69 (78)
T 2ic6_A 51 RAAVSALETKLGELKRELA 69 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4566777777777776654
No 331
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=27.15 E-value=2e+02 Score=21.68 Aligned_cols=48 Identities=15% Similarity=0.078 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 255 AHLNELETQAGQLRAEHSS------LLKGLTDVNQKYDESAVNNRILKADIETL 302 (318)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~------L~~~l~~L~qk~~~l~~EN~~Lrael~~L 302 (318)
..|..||.++..|+.+... =..++..+..++..+..+-..+-.+=..|
T Consensus 29 ~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erWeeL 82 (89)
T 2lw1_A 29 QLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERWEYL 82 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555554431 12344444444444444444444443333
No 332
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=27.00 E-value=35 Score=24.74 Aligned_cols=20 Identities=10% Similarity=0.243 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHhhhhcc
Q 021065 298 DIETLRAKLYMFIEIFLGEN 317 (318)
Q Consensus 298 el~~Lr~kl~~~e~~v~~~~ 317 (318)
.+..|+.+|..||.+|..+.
T Consensus 59 ~~~~L~~ri~~LE~~l~~l~ 78 (81)
T 1hwt_C 59 ELKKLRERVKSLEKTLSKVH 78 (81)
T ss_dssp HHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 44556666666666665543
No 333
>3aon_A V-type sodium ATPase subunit D; V-ATPase, coiled-coil, alpha/beta fold, hydrol Na(+)-ATPase, NTPA3-NTPB3, NTPC, central AXIS; HET: MSE; 2.00A {Enterococcus hirae}
Probab=26.89 E-value=3.2e+02 Score=23.95 Aligned_cols=34 Identities=18% Similarity=0.154 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 271 HSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (318)
Q Consensus 271 N~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~ 304 (318)
..-|..+-..|..++..+..++..++.++..+-.
T Consensus 33 ~~LLk~Krd~L~~ef~~i~~~~~~~r~~~~~~~~ 66 (217)
T 3aon_A 33 HKLLKDKQDELMRQFILLIRKNNELRQAIEKETQ 66 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444455555555555555554433
No 334
>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=26.49 E-value=60 Score=24.70 Aligned_cols=15 Identities=27% Similarity=0.399 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHH
Q 021065 288 SAVNNRILKADIETL 302 (318)
Q Consensus 288 l~~EN~~Lrael~~L 302 (318)
|..+|..||.+|..|
T Consensus 48 L~eq~~lLK~EIRRl 62 (71)
T 3bbp_D 48 LMEQIKLLKSEIRRL 62 (71)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 444455555555444
No 335
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=26.42 E-value=3.3e+02 Score=24.57 Aligned_cols=18 Identities=17% Similarity=0.460 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 021065 257 LNELETQAGQLRAEHSSL 274 (318)
Q Consensus 257 l~eLE~qV~~L~~EN~~L 274 (318)
++.|+.++..|+.+|..|
T Consensus 124 ie~l~eEi~~LkeEn~eL 141 (209)
T 2wvr_A 124 IEQKDNEIARLKKENKEL 141 (209)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444433
No 336
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=26.37 E-value=1.8e+02 Score=24.22 Aligned_cols=16 Identities=13% Similarity=0.092 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 021065 273 SLLKGLTDVNQKYDES 288 (318)
Q Consensus 273 ~L~~~l~~L~qk~~~l 288 (318)
.|..++..+..+|+.+
T Consensus 88 ~L~~~f~~~~~~fq~~ 103 (196)
T 1fio_A 88 NSRQRFLKLIQDYRIV 103 (196)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 337
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=26.32 E-value=2.1e+02 Score=21.58 Aligned_cols=37 Identities=11% Similarity=0.158 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 021065 280 DVNQKYDESAVNNRILKADIETLRAKLYMFIEIFLGE 316 (318)
Q Consensus 280 ~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~~ 316 (318)
.|..+...+..+-..|..++..++.++..++..+...
T Consensus 69 ~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l~~~ 105 (107)
T 1fxk_A 69 ELQEKLETLQLREKTIERQEERVMKKLQEMQVNIQEA 105 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555555555566666666666665555443
No 338
>3n7n_E Monopolin complex subunit LRS4; meiosis, rDNA, replication; 3.90A {Saccharomyces cerevisiae}
Probab=26.25 E-value=14 Score=29.65 Aligned_cols=50 Identities=18% Similarity=0.121 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhhh
Q 021065 266 QLRAEHSSLLKGLTDVNQKYDESAVNNRIL----KADIETLRAKLYMFIEIFLG 315 (318)
Q Consensus 266 ~L~~EN~~L~~~l~~L~qk~~~l~~EN~~L----rael~~Lr~kl~~~e~~v~~ 315 (318)
.+..|.=.|.++++.|..+++.+..||..| |.+-.-|..||.....+|-+
T Consensus 40 ~~~~Etl~LQrQv~qLt~~lQ~~~~Ene~Lke~qKtqkal~ESKL~~~kk~ie~ 93 (95)
T 3n7n_E 40 KVVDETLFLQRQIAQLNKQLQLSFQENEKLLSVQKNQKALYQSKLSSKDAFIDD 93 (95)
T ss_dssp ------------------------------------------------------
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455566677788888888888888888887 34556666777666665554
No 339
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=26.22 E-value=1.7e+02 Score=21.94 Aligned_cols=26 Identities=8% Similarity=0.229 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 258 NELETQAGQLRAEHSSLLKGLTDVNQ 283 (318)
Q Consensus 258 ~eLE~qV~~L~~EN~~L~~~l~~L~q 283 (318)
+.+..++..|+.+...+..++..+.+
T Consensus 5 ~aiKkkmqaLk~Ekdna~e~~e~lE~ 30 (75)
T 3mtu_A 5 DAIKKKMQMLKLDKENALDRAEQAEA 30 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555
No 340
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=26.21 E-value=3.1e+02 Score=23.45 Aligned_cols=33 Identities=6% Similarity=0.008 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 279 TDVNQKYDESAVNNRILKADIETLRAKLYMFIE 311 (318)
Q Consensus 279 ~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~ 311 (318)
..+.+.+.........+.+++..|++++..++-
T Consensus 69 ~~l~rdleasr~akk~~ea~la~l~~~~~~LeA 101 (146)
T 2xnx_M 69 EAITREQEINRNLLGNAKLELDQLSSEKEQLTI 101 (146)
T ss_dssp TTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHH
Confidence 334444444444444445555555555544443
No 341
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=25.78 E-value=2.2e+02 Score=21.72 Aligned_cols=37 Identities=11% Similarity=0.243 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 272 SSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYM 308 (318)
Q Consensus 272 ~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~ 308 (318)
..|..++..+...+..+..+-..|..++..|+.+|+.
T Consensus 73 ~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~ 109 (117)
T 2zqm_A 73 AELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQS 109 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555555555555543
No 342
>1h7c_A Tubulin-specific chaperone A; protein folding, cofactor A; 1.8A {Homo sapiens} SCOP: a.7.5.1
Probab=25.66 E-value=1.8e+02 Score=23.19 Aligned_cols=15 Identities=33% Similarity=0.304 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHH
Q 021065 292 NRILKADIETLRAKL 306 (318)
Q Consensus 292 N~~Lrael~~Lr~kl 306 (318)
...|+.-+..|..-|
T Consensus 68 ~~Rl~~a~~~L~~~l 82 (108)
T 1h7c_A 68 QRRLEAAYLDLQRIL 82 (108)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444444
No 343
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=25.52 E-value=1.7e+02 Score=24.63 Aligned_cols=22 Identities=9% Similarity=-0.046 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 021065 292 NRILKADIETLRAKLYMFIEIF 313 (318)
Q Consensus 292 N~~Lrael~~Lr~kl~~~e~~v 313 (318)
...+..++..|+.+++..+.+|
T Consensus 98 ~~~~e~r~~~L~~ql~e~e~ll 119 (135)
T 2e7s_A 98 KYAIEILNKRLTEQLREKDMLL 119 (135)
T ss_dssp HHHHHHHHHHHHHTTTHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444443
No 344
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=25.45 E-value=2.4e+02 Score=21.92 Aligned_cols=18 Identities=17% Similarity=0.224 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 021065 296 KADIETLRAKLYMFIEIF 313 (318)
Q Consensus 296 rael~~Lr~kl~~~e~~v 313 (318)
|.++..|+..|..-+..|
T Consensus 53 K~El~~Lq~qLe~kd~ei 70 (81)
T 3qh9_A 53 KAEVAQLQEQVALKDAEI 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHH
Confidence 334444444443333333
No 345
>3fx0_A NF-kappa-B essential modulator; coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia, HOST-virus interaction; 3.20A {Homo sapiens}
Probab=25.44 E-value=30 Score=27.78 Aligned_cols=54 Identities=17% Similarity=0.174 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 252 RKQAHLNELETQAGQLR---AEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (318)
Q Consensus 252 RKk~~l~eLE~qV~~L~---~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~k 305 (318)
.|+..+++|..++.+++ ..+..|..++......|..-...-..|..+.+.|...
T Consensus 35 ~KQ~~ideLKe~i~q~~~~~E~i~vL~aQ~~iY~~DF~aERaaREk~~~EKe~L~~q 91 (96)
T 3fx0_A 35 AKQEVIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERQAREKLAEKKELLQEQ 91 (96)
T ss_dssp TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTSCC---
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 36667777777666666 4455566666666666666555544444444444333
No 346
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=25.42 E-value=1.8e+02 Score=25.06 Aligned_cols=25 Identities=16% Similarity=0.222 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 265 GQLRAEHSSLLKGLTDVNQKYDESA 289 (318)
Q Consensus 265 ~~L~~EN~~L~~~l~~L~qk~~~l~ 289 (318)
+.|+.|...+..++..-++++++|.
T Consensus 8 ~~Le~Ek~~~~~rI~~K~~~LqeL~ 32 (155)
T 2aze_A 8 QNLEVERQRRLERIKQKQSQLQELI 32 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444443333333333
No 347
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=25.34 E-value=1.4e+02 Score=27.37 Aligned_cols=24 Identities=17% Similarity=0.315 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 259 ELETQAGQLRAEHSSLLKGLTDVN 282 (318)
Q Consensus 259 eLE~qV~~L~~EN~~L~~~l~~L~ 282 (318)
.|-.+|+.++...+.|..++.++.
T Consensus 3 ~lnsRvd~~EErIs~le~rleei~ 26 (233)
T 2yko_A 3 SLRSRCDQLEERVSAAEDEINEIK 26 (233)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443
No 348
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=25.31 E-value=2.8e+02 Score=23.17 Aligned_cols=46 Identities=13% Similarity=0.158 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 265 GQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFI 310 (318)
Q Consensus 265 ~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e 310 (318)
+.|+.-..+|..++..|..+-=.++.....-.-+|.+|+.+|..+.
T Consensus 61 ~~L~e~~keLh~~I~~LEeEKYDlE~kvkkq~yEI~dL~~rV~Dl~ 106 (133)
T 1j1d_C 61 AELQDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQKIFDLR 106 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHcchHHHHHHHHHHHHH
Confidence 4566666666666666655544444444444566777777777663
No 349
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=25.28 E-value=1.2e+02 Score=25.82 Aligned_cols=32 Identities=19% Similarity=0.129 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESA 289 (318)
Q Consensus 258 ~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~ 289 (318)
..||.++..++.....+..++..+.+++..++
T Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 34 (192)
T 2gkw_A 3 GLLESQLSRHDQMLSVHDIRLADMDLRFQVLE 34 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34555555555555555555555554444443
No 350
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=24.85 E-value=2e+02 Score=25.73 Aligned_cols=22 Identities=23% Similarity=0.252 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 021065 257 LNELETQAGQLRAEHSSLLKGL 278 (318)
Q Consensus 257 l~eLE~qV~~L~~EN~~L~~~l 278 (318)
++.|+.++..|+.+...|..++
T Consensus 61 ~~~l~~~l~~l~~e~~el~d~~ 82 (213)
T 4ani_A 61 LAAAKAQIAELEAKLSEMEHRY 82 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555554444444433
No 351
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=24.82 E-value=83 Score=19.41 Aligned_cols=19 Identities=11% Similarity=0.237 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 021065 296 KADIETLRAKLYMFIEIFL 314 (318)
Q Consensus 296 rael~~Lr~kl~~~e~~v~ 314 (318)
+.++.+|...++.+.+.|+
T Consensus 6 kdevgelkgevralkdevk 24 (27)
T 3v86_A 6 KDEVGELKGEVRALKDEVK 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhHHHHHHHHHh
Confidence 3334444444444444433
No 352
>2f23_A Anti-cleavage anti-GREA transcription factor GFH1; anti-GREA GFH1 thermus thermophilus; 1.60A {Thermus thermophilus} SCOP: a.2.1.1 d.26.1.2 PDB: 2eul_A 3aoh_X* 3aoi_X* 2etn_A
Probab=24.79 E-value=2.1e+02 Score=23.77 Aligned_cols=26 Identities=12% Similarity=0.178 Sum_probs=18.4
Q ss_pred HHHH---HHHHHHHHHHHHHHHHHhhhhc
Q 021065 291 NNRI---LKADIETLRAKLYMFIEIFLGE 316 (318)
Q Consensus 291 EN~~---Lrael~~Lr~kl~~~e~~v~~~ 316 (318)
||.. -|.+...|..++..+++.+.+.
T Consensus 44 Enaey~aak~~q~~~e~ri~~L~~~L~~a 72 (156)
T 2f23_A 44 DDSGLEAAKQEKARIEARIDSLEDILSRA 72 (156)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHE
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 5544 4667777778888888887653
No 353
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=24.41 E-value=82 Score=30.72 Aligned_cols=16 Identities=13% Similarity=0.111 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 021065 256 HLNELETQAGQLRAEH 271 (318)
Q Consensus 256 ~l~eLE~qV~~L~~EN 271 (318)
++++++.++..+....
T Consensus 26 ~i~~~~~~~~~~~~~~ 41 (405)
T 4b4t_J 26 KIQETELKIRSKTENV 41 (405)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4445554444444333
No 354
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=24.41 E-value=2.8e+02 Score=22.41 Aligned_cols=69 Identities=12% Similarity=0.178 Sum_probs=32.7
Q ss_pred HHHHHhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 237 RRMLSNRESARRSRRRKQAHL---NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (318)
Q Consensus 237 RR~lsNRESArRSR~RKk~~l---~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~k 305 (318)
+|.-+|+.+-+.--.+=.+.. .+-+.+++..+.+..+-.+++..+.-+..+|...|--|.-++..|..-
T Consensus 34 ~ri~~NtqaI~~NS~aiaanTr~lQqh~aRlnsqQrQI~ENhkEMKq~aaqsaaLlsk~yh~ene~ar~kkl 105 (114)
T 2xzr_A 34 GRVTRNTQSIEKNSKAIAANTRTLQQHSARLDSQQRQINENHKEMKQIEDKIEEILSKIYHIENEIARIKKL 105 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHhchHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 566777777663222222111 122233333333333334444455555556666666666666555443
No 355
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=23.95 E-value=2.7e+02 Score=21.99 Aligned_cols=29 Identities=10% Similarity=0.083 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 258 NELETQAGQLRAEHSSLLKGLTDVNQKYD 286 (318)
Q Consensus 258 ~eLE~qV~~L~~EN~~L~~~l~~L~qk~~ 286 (318)
++.|.++..--.|.+.++..+-+|...+.
T Consensus 39 ~eyE~ki~~Qi~Emq~Ir~tvyeLE~~h~ 67 (92)
T 3vp9_A 39 KDYDFKMNQQLAEMQQIRNTVYERELTHR 67 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566655544455555555555444433
No 356
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=23.86 E-value=1.5e+02 Score=27.69 Aligned_cols=28 Identities=21% Similarity=0.256 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 255 AHLNELETQAGQLRAEHSSLLKGLTDVN 282 (318)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~ 282 (318)
++++.|+.+.+.|+.|.+.|.++...+.
T Consensus 185 ~eie~L~~~~~~L~eEi~~Le~~~e~~~ 212 (315)
T 2ve7_A 185 FKLESLEAKNRALNEQIARLEQERSTAN 212 (315)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3555555555555555555554444333
No 357
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=23.56 E-value=1.5e+02 Score=26.70 Aligned_cols=40 Identities=13% Similarity=0.243 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 271 HSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFI 310 (318)
Q Consensus 271 N~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e 310 (318)
.++|+..+..+...|+.|..--..|++++..|+.+++.++
T Consensus 32 ~~~~~a~~~s~~s~~~dl~~s~~~l~ae~~~L~~~l~kLe 71 (206)
T 3oa7_A 32 LQQLRVNYGSFVSEYNDLTKSHNTLSKELDNLRSRFGNLE 71 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcc
Confidence 4567777777777888888877788888888888887776
No 358
>3f1i_H Hepatocyte growth factor-regulated tyrosine kinas substrate; HGS, ESCRT, ubiquitin, MVB, endosome, membrane, metal- phosphoprotein, protein transport, transport; 2.30A {Homo sapiens}
Probab=23.41 E-value=2.6e+02 Score=22.39 Aligned_cols=40 Identities=18% Similarity=0.111 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 272 SSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIE 311 (318)
Q Consensus 272 ~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~ 311 (318)
+.|...|+.+..++.....++...|...+.|+.||....|
T Consensus 37 QsLF~~lt~MH~~Ll~~i~~~ee~R~~yE~LQDkL~qi~e 76 (98)
T 3f1i_H 37 LSLFQSINGMHPQLLELLNQLDERRLYYEGLQDKLAQIRD 76 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555566666666666666666655544
No 359
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=23.27 E-value=6.1e+02 Score=25.85 Aligned_cols=53 Identities=9% Similarity=0.181 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 254 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKL 306 (318)
Q Consensus 254 k~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl 306 (318)
+..+..++.-|+.++...+.+..+...+...+..+..|-.-++.++..+.+|+
T Consensus 362 rNEItsaeSaInslqaqvSa~t~e~k~A~d~l~a~~kek~~~~n~~a~~~~Ki 414 (602)
T 1cii_A 362 RNKITSAESAVNSARNNLSARTNEQKHANDALNALLKEKENIRNQLSGINQKI 414 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 33344444444444444444444444444444444444444555555554443
No 360
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=23.20 E-value=1.4e+02 Score=25.93 Aligned_cols=54 Identities=17% Similarity=0.199 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 021065 254 QAHLNELETQAGQLRAEHSS-LLKGLTDVNQKYDESAVNN-RILKADIETLRAKLY 307 (318)
Q Consensus 254 k~~l~eLE~qV~~L~~EN~~-L~~~l~~L~qk~~~l~~EN-~~Lrael~~Lr~kl~ 307 (318)
.+++++|..++..+..|-.. +...++.++.++.-...+= ..|+.++++|+.+|.
T Consensus 105 ~kdlEelr~kL~P~~eEL~~~l~~~~Eelr~~L~Py~eelr~kl~~~~eeLr~~l~ 160 (191)
T 1nfn_A 105 GADMEDVCGRLVQYRGEVQAMLGQSTEELRVRLASHLRKLRKRLLRDADDLQKRLA 160 (191)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhH
Confidence 44566666665554443322 2222223333333322221 234556666666664
No 361
>4a3a_A Amphiphysin; structural genomics, invagination, knobs-IN-holes, curvature membrane, structural genomics consortium; 1.78A {Homo sapiens} PDB: 4atm_A 3sog_A
Probab=23.19 E-value=3.9e+02 Score=23.65 Aligned_cols=17 Identities=12% Similarity=0.116 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 021065 265 GQLRAEHSSLLKGLTDV 281 (318)
Q Consensus 265 ~~L~~EN~~L~~~l~~L 281 (318)
...+.-|..|..+|-.+
T Consensus 179 ~~Ye~lN~~L~eELP~l 195 (243)
T 4a3a_A 179 KVFEEFNVDLQEELPSL 195 (243)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444454444433
No 362
>4g63_A Cytosolic IMP-GMP specific 5'-nucleotidase; structural genomics, PSI-biology, northeast structural genom consortium, NESG; 2.70A {Legionella pneumophila subsp} PDB: 2bde_A
Probab=23.17 E-value=2e+02 Score=28.67 Aligned_cols=26 Identities=12% Similarity=0.034 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhc
Q 021065 291 NNRILKADIETLRAKLYMFIEIFLGE 316 (318)
Q Consensus 291 EN~~Lrael~~Lr~kl~~~e~~v~~~ 316 (318)
|-..|+.++..++.+++.+.+..+.+
T Consensus 376 e~~~l~~~~~~~~~~~~~~~~~~~~~ 401 (470)
T 4g63_A 376 EIHDLQLQISTVDLQISRLLQEQNSF 401 (470)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33445666666666666666655543
No 363
>4gif_A Polycystic kidney disease 2-like 1 protein; coiled-coil, trimer, Trp channel, transient receptor potenti channel, polycystic kidney disease (PKD); 2.80A {Homo sapiens}
Probab=23.16 E-value=1.9e+02 Score=20.08 Aligned_cols=25 Identities=16% Similarity=0.145 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 287 ESAVNNRILKADIETLRAKLYMFIE 311 (318)
Q Consensus 287 ~l~~EN~~Lrael~~Lr~kl~~~e~ 311 (318)
.++.--.-.-.++..+-.||+++|.
T Consensus 18 qlE~~l~gI~S~idav~~Kl~~~Er 42 (45)
T 4gif_A 18 QLETVLEGVVSQIDAVGSKLKMLER 42 (45)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333344566666677776665
No 364
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=22.95 E-value=2.9e+02 Score=22.40 Aligned_cols=12 Identities=17% Similarity=0.282 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 021065 258 NELETQAGQLRA 269 (318)
Q Consensus 258 ~eLE~qV~~L~~ 269 (318)
.+|+.++..|+.
T Consensus 91 ~~l~~~i~~L~~ 102 (142)
T 3gp4_A 91 IELKNRIDVMQE 102 (142)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 365
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=22.91 E-value=1.2e+02 Score=22.69 Aligned_cols=22 Identities=18% Similarity=0.211 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 021065 292 NRILKADIETLRAKLYMFIEIF 313 (318)
Q Consensus 292 N~~Lrael~~Lr~kl~~~e~~v 313 (318)
+..=..++..||.+|..+.+++
T Consensus 34 L~~kd~eI~eLr~~LdK~qsVl 55 (67)
T 1zxa_A 34 LSEKEEEIQELKRKLHKCQSVL 55 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3333344444444444444443
No 366
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=22.85 E-value=2.5e+02 Score=21.18 Aligned_cols=36 Identities=6% Similarity=0.142 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 272 SSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLY 307 (318)
Q Consensus 272 ~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~ 307 (318)
..|..+...+...+..+..+-..|+.++..|+.+|+
T Consensus 68 ~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l~ 103 (107)
T 1fxk_A 68 EELQEKLETLQLREKTIERQEERVMKKLQEMQVNIQ 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555555554
No 367
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=22.84 E-value=3.2e+02 Score=23.89 Aligned_cols=33 Identities=12% Similarity=0.303 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 246 ARRSRRRKQAHLNELETQAGQLRAEHSSLLKGL 278 (318)
Q Consensus 246 ArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l 278 (318)
|-|+-.+.++.++.||.++...+.++..+..+|
T Consensus 133 AertV~kLqkeiD~LEDeL~~eKek~k~i~~eL 165 (175)
T 3mud_A 133 CLDTTAKNEKSIDDLEEKVAHAKEENLNMHQML 165 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555666666555555555555444
No 368
>1grj_A GREA protein; transcript elongation factor, transcript cleavage factor, transcription regulation; 2.20A {Escherichia coli} SCOP: a.2.1.1 d.26.1.2
Probab=22.46 E-value=2.7e+02 Score=23.21 Aligned_cols=53 Identities=13% Similarity=0.067 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHH-----HHHHHH---HHHHHHHHHHHHHHHHhhhhc
Q 021065 264 AGQLRAEHSSLLK-GLTDVNQKYDESA-----VNNRIL---KADIETLRAKLYMFIEIFLGE 316 (318)
Q Consensus 264 V~~L~~EN~~L~~-~l~~L~qk~~~l~-----~EN~~L---rael~~Lr~kl~~~e~~v~~~ 316 (318)
.+.|+.|...|+. +...+.+.+..+. .||... |.+...+..++..+++++.+.
T Consensus 11 ~~~L~~El~~L~~~~rp~i~~~i~~A~~~gDlsENaeY~aak~~q~~~e~ri~~Le~~L~~a 72 (158)
T 1grj_A 11 AEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEGRIKDIEAKLSNA 72 (158)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHTTCCGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHE
T ss_pred HHHHHHHHHHHHhccchhhHhhHHHHHhcccccccchhhhHHHHHHHHHHHHHHHHHHHhhC
Confidence 3556666666665 4444445555443 267654 556677778888888888764
No 369
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=22.39 E-value=2.1e+02 Score=23.82 Aligned_cols=17 Identities=29% Similarity=0.343 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 021065 293 RILKADIETLRAKLYMF 309 (318)
Q Consensus 293 ~~Lrael~~Lr~kl~~~ 309 (318)
+.-+.+...|..++..+
T Consensus 122 Rir~~q~~~L~~kf~~~ 138 (180)
T 1s94_A 122 RIRKTQYSTISRKFVEV 138 (180)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45566777777777654
No 370
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=22.39 E-value=1.5e+02 Score=23.71 Aligned_cols=34 Identities=15% Similarity=0.077 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAV 290 (318)
Q Consensus 257 l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~ 290 (318)
+..|..++..|+.+-+.|-..+..+++++..+..
T Consensus 8 ~~~Lk~El~~L~~~E~~LD~~i~~~~~~l~~lte 41 (106)
T 2aze_B 8 LEGLTQDLRQLQESEQQLDHLMNICTTQLRLLSE 41 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455556666666666666666666666555553
No 371
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=22.17 E-value=2.4e+02 Score=22.42 Aligned_cols=13 Identities=15% Similarity=0.133 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHH
Q 021065 295 LKADIETLRAKLY 307 (318)
Q Consensus 295 Lrael~~Lr~kl~ 307 (318)
|-..+..++..|+
T Consensus 25 LD~~i~~~~~~l~ 37 (106)
T 2aze_B 25 LDHLMNICTTQLR 37 (106)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 372
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=22.12 E-value=2.7e+02 Score=21.36 Aligned_cols=54 Identities=31% Similarity=0.374 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 251 RRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (318)
Q Consensus 251 ~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~ 304 (318)
...++.|+-|..--+.|..=-+.|..-++.|.++...+...=..|+...++|..
T Consensus 21 ~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~~ 74 (78)
T 3iv1_A 21 DRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELSS 74 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777788777888888888888888888888888888877754
No 373
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=22.12 E-value=52 Score=33.33 Aligned_cols=11 Identities=18% Similarity=0.347 Sum_probs=5.1
Q ss_pred HHHHHHHHHHh
Q 021065 232 DDKRARRMLSN 242 (318)
Q Consensus 232 e~KR~RR~lsN 242 (318)
++|..|.+.++
T Consensus 311 e~~~~~~~e~~ 321 (575)
T 2i1j_A 311 EEKLAKQAQRE 321 (575)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 44444444444
No 374
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=21.83 E-value=1.7e+02 Score=20.10 Aligned_cols=31 Identities=13% Similarity=0.209 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 259 ELETQAGQLRAEHSSLLKGLTDVNQKYDESA 289 (318)
Q Consensus 259 eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~ 289 (318)
+|-.++...-.|.+.-..+++.++.+...|+
T Consensus 6 ~l~qkI~kVdrEI~Kte~kI~~lqkKlkeLe 36 (42)
T 2l5g_B 6 ELIQNMDRVDREITMVEQQISKLKKKQQQLE 36 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556666666666666666555555543
No 375
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=21.70 E-value=1.9e+02 Score=22.52 Aligned_cols=57 Identities=12% Similarity=0.114 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 253 KQAHLNELETQAGQLRAEHSSLLKGLTDVNQK-YDESAVNNRILKADIETLRAKLYMF 309 (318)
Q Consensus 253 Kk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk-~~~l~~EN~~Lrael~~Lr~kl~~~ 309 (318)
|++.+.+.+..++..+.-..+|.-++..+-.. -..+...=+..|.++..|...++.+
T Consensus 36 rk~~i~~ie~~l~EA~ell~qMelE~r~~p~~~R~~~~~klr~Yk~dL~~lk~elk~~ 93 (102)
T 1vcs_A 36 KKQMVANVEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLETDFKRS 93 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555554444444443333332110 1122223333444445454444443
No 376
>4b6x_A AVRRPS4, avirulence protein; toxin, type 3 secreted effector; 2.20A {Pseudomonas syringae PV}
Probab=21.61 E-value=2.9e+02 Score=21.59 Aligned_cols=20 Identities=15% Similarity=0.197 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHhhhh
Q 021065 296 KADIETLRAKLYMFIEIFLG 315 (318)
Q Consensus 296 rael~~Lr~kl~~~e~~v~~ 315 (318)
++++..|..++.++-+.=.|
T Consensus 68 raDL~~l~r~~av~g~E~RR 87 (90)
T 4b6x_A 68 RADLADLQRRFAVLRNEDRR 87 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhh
Confidence 55666677777666554444
No 377
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=21.35 E-value=6.2e+02 Score=26.15 Aligned_cols=17 Identities=29% Similarity=0.378 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 021065 254 QAHLNELETQAGQLRAE 270 (318)
Q Consensus 254 k~~l~eLE~qV~~L~~E 270 (318)
-..+++|+.++.+|+.+
T Consensus 400 p~~l~~~~~~~~~~~~~ 416 (854)
T 1qvr_A 400 PEEIDALERKKLQLEIE 416 (854)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHH
Confidence 34566666666655554
No 378
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=21.14 E-value=2.6e+02 Score=20.70 Aligned_cols=12 Identities=25% Similarity=0.213 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHH
Q 021065 268 RAEHSSLLKGLT 279 (318)
Q Consensus 268 ~~EN~~L~~~l~ 279 (318)
++..++|.+-+.
T Consensus 26 eAkiQQLmkVN~ 37 (63)
T 2w6a_A 26 EAKVQQLMKVNS 37 (63)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhH
Confidence 333333333333
No 379
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=21.05 E-value=4.8e+02 Score=24.90 Aligned_cols=31 Identities=10% Similarity=0.283 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 280 DVNQKYDESAVNNRILKADIETLRAKLYMFI 310 (318)
Q Consensus 280 ~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e 310 (318)
.|.+.+.....+|+.|..++..|.-.|-.|.
T Consensus 223 ~l~~~~~~~~~~~~~~~~~~~~lkp~l~ql~ 253 (373)
T 3hhm_B 223 RLEEDLKKQAAEYREIDKRMNSIKPDLIQLR 253 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhccChHHHHHH
Confidence 4444444455556666666655554444443
No 380
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=20.97 E-value=2.5e+02 Score=22.19 Aligned_cols=42 Identities=12% Similarity=0.056 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065 263 QAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (318)
Q Consensus 263 qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~ 304 (318)
++.+|....+.|..++..+.+++..+...-..++.-++.|..
T Consensus 2 ~~~~l~~~~q~l~~~~~~l~~~~~~l~~~i~e~~~~~e~l~~ 43 (133)
T 1fxk_C 2 ALAEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSD 43 (133)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 381
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=20.58 E-value=3.1e+02 Score=21.41 Aligned_cols=58 Identities=12% Similarity=0.054 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 021065 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFLGE 316 (318)
Q Consensus 257 l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~~ 316 (318)
+..++.++..|+.|-..+..=|.++..+- ....+...+..+..||.-...+||+|-.+
T Consensus 21 ~~gv~~~i~~Lk~eL~~m~a~L~da~~~~--~~~~d~~vk~W~~~vrdlaYD~ED~iD~f 78 (115)
T 3qfl_A 21 HKGVKKNIEDLGKELESMNAALIKIGEVP--REQLDSQDKLWADEVRELSYVIEDVVDKF 78 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSC--GGGCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhchHHHHHHHHHHHHHHHHHHHHHHHhc--cccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556666655555555554432210 02247788999999999999999998643
No 382
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=20.05 E-value=1.4e+02 Score=20.53 Aligned_cols=12 Identities=42% Similarity=0.423 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHH
Q 021065 298 DIETLRAKLYMF 309 (318)
Q Consensus 298 el~~Lr~kl~~~ 309 (318)
++..|..||..+
T Consensus 24 Ri~~LE~KLd~L 35 (43)
T 2pnv_A 24 RIVTLETKLETL 35 (43)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
Done!