BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021070
(317 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ANS|A Chain A, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANS|B Chain B, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANT|A Chain A, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANT|B Chain B, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
Length = 336
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 63/137 (45%), Gaps = 8/137 (5%)
Query: 61 AVVFLHAFGFDGILTWQFQVLALAKT-YAVYVPDFLFFGGSITDRSERTASFQAEC--MV 117
AV H F + +W++Q+ ALA+ Y V D +G S + C MV
Sbjct: 41 AVCLCHGFP-ESWYSWRYQIPALAQAGYRVLAMDMKGYGESSAPPEIEEYCMEVLCKEMV 99
Query: 118 KGLRKLGVKRCTLVGVSYGGMVGFKMAEMYPDLVESLVATCSVMFTESVSNAALERIGFD 177
L KLG+ + +G +GGM+ + MA YP+ V ++ + + + + + LE I +
Sbjct: 100 TFLDKLGLSQAVFIGHDWGGMLVWYMALFYPERVRAVASLNTPFIPANPNMSPLESIKAN 159
Query: 178 SWVDYLL----PKTADA 190
DY L P A+A
Sbjct: 160 PVFDYQLYFQEPGVAEA 176
>pdb|1S8O|A Chain A, Human Soluble Epoxide Hydrolase
pdb|1VJ5|A Chain A, Human Soluble Epoxide Hydrolase- N-Cyclohexyl-N'-(4-
Iodophenyl)urea Complex
pdb|1ZD2|P Chain P, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Ethanoic Acid Complex
pdb|1ZD3|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Butyric Acid Complex
pdb|1ZD4|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Hexanoic Acid Complex
pdb|1ZD5|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Heptanoic Acid Complex
pdb|3I1Y|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3I28|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3KOO|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3OTQ|A Chain A, Soluble Epoxide Hydrolase In Complex With Pyrazole
Antagonist
pdb|4HAI|A Chain A, Crystal Structure Of Human Soluble Epoxide Hydrolase
Complexed With N-
Cycloheptyl-1-(mesitylsulfonyl)piperidine-4-carboxamide
Length = 555
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 63/137 (45%), Gaps = 8/137 (5%)
Query: 61 AVVFLHAFGFDGILTWQFQVLALAKT-YAVYVPDFLFFGGSITDRSERTASFQAEC--MV 117
AV H F + +W++Q+ ALA+ Y V D +G S + C MV
Sbjct: 260 AVCLCHGFP-ESWYSWRYQIPALAQAGYRVLAMDMKGYGESSAPPEIEEYCMEVLCKEMV 318
Query: 118 KGLRKLGVKRCTLVGVSYGGMVGFKMAEMYPDLVESLVATCSVMFTESVSNAALERIGFD 177
L KLG+ + +G +GGM+ + MA YP+ V ++ + + + + + LE I +
Sbjct: 319 TFLDKLGLSQAVFIGHDWGGMLVWYMALFYPERVRAVASLNTPFIPANPNMSPLESIKAN 378
Query: 178 SWVDYLL----PKTADA 190
DY L P A+A
Sbjct: 379 PVFDYQLYFQEPGVAEA 395
>pdb|3PDC|A Chain A, Crystal Structure Of Hydrolase Domain Of Human Soluble
Epoxide Hydrolase Complexed With A Benzoxazole Inhibitor
pdb|3PDC|B Chain B, Crystal Structure Of Hydrolase Domain Of Human Soluble
Epoxide Hydrolase Complexed With A Benzoxazole Inhibitor
Length = 344
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 63/137 (45%), Gaps = 8/137 (5%)
Query: 61 AVVFLHAFGFDGILTWQFQVLALAKT-YAVYVPDFLFFGGSITDRSERTASFQAEC--MV 117
AV H F + +W++Q+ ALA+ Y V D +G S + C MV
Sbjct: 56 AVCLCHGFP-ESWYSWRYQIPALAQAGYRVLAMDMKGYGESSAPPEIEEYCMEVLCKEMV 114
Query: 118 KGLRKLGVKRCTLVGVSYGGMVGFKMAEMYPDLVESLVATCSVMFTESVSNAALERIGFD 177
L KLG+ + +G +GGM+ + MA YP+ V ++ + + + + + LE I +
Sbjct: 115 TFLDKLGLSQAVFIGHDWGGMLVWYMALFYPERVRAVASLNTPFIPANPNMSPLESIKAN 174
Query: 178 SWVDYLL----PKTADA 190
DY L P A+A
Sbjct: 175 PVFDYQLYFQEPGVAEA 191
>pdb|2D0D|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) A129v Mutant
Length = 282
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 54/254 (21%), Positives = 106/254 (41%), Gaps = 25/254 (9%)
Query: 58 EKHAVVFLHAFG--FDGILTWQFQVLALAKTYAVYVPDFLFFGGSITDRSER---TASFQ 112
E V+ +H G W+ + AL+K Y V PD + FG TDR E +
Sbjct: 24 EGQPVILIHGSGPGVSAYANWRLTIPALSKFYRVIAPDMVGFG--FTDRPENYNYSKDSW 81
Query: 113 AECMVKGLRKLGVKRCTLVGVSYGGMVGFKMAEMYPDLVESLVATCSVMFTESVSNAALE 172
+ ++ + L +++ +VG S+GG + A Y + V+ +V +V V+
Sbjct: 82 VDHIIGIMDALEIEKAHIVGNSFGGGLAIATALRYSERVDRMVLMGAVGTRFDVTEGLNA 141
Query: 173 RIGFDSWVDYLLPKTADALKVKLDIACYK----LPTLPAFVFKHILEWG-QALFDH--RK 225
G+ + + ++ LDI Y L ++ ++ G Q F +
Sbjct: 142 VWGYT--------PSIENMRNLLDIFAYDRSLVTDELARLRYEASIQPGFQESFSSMFPE 193
Query: 226 ERKELVETLVISDKDFSVPRFTQKIYLLWGENDKILDMQTARNCKEQVGENATLVSIEKA 285
R+ ++ L SD+D + + ++ G D+++ + ++ E + + A L +
Sbjct: 194 PRQRWIDALASSDED--IKTLPNETLIIHGREDQVVPLSSSLRLGELI-DRAQLHVFGRC 250
Query: 286 GHLPNVERPFVYNR 299
GH +E+ +NR
Sbjct: 251 GHWTQIEQTDRFNR 264
>pdb|1IUN|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Hexagonal
pdb|1IUN|B Chain B, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Hexagonal
pdb|1IUO|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Complexed With
Acetates
pdb|1IUP|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Complexed With
Isobutyrates
pdb|1UK6|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With Propionate
pdb|1UK7|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With N-Butyrate
pdb|1UK8|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With N-valerate
pdb|1UK9|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With Isovalerate
pdb|1UKA|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With (S)-2-Methylbutyrate
pdb|1UKB|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With Benzoate
Length = 282
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/254 (20%), Positives = 105/254 (41%), Gaps = 25/254 (9%)
Query: 58 EKHAVVFLHAFG--FDGILTWQFQVLALAKTYAVYVPDFLFFGGSITDRSER---TASFQ 112
E V+ +H G W+ + AL+K Y V PD + FG TDR E +
Sbjct: 24 EGQPVILIHGSGPGVSAYANWRLTIPALSKFYRVIAPDMVGFG--FTDRPENYNYSKDSW 81
Query: 113 AECMVKGLRKLGVKRCTLVGVSYGGMVGFKMAEMYPDLVESLVATCSVMFTESVSNAALE 172
+ ++ + L +++ +VG ++GG + A Y + V+ +V + V+
Sbjct: 82 VDHIIGIMDALEIEKAHIVGNAFGGGLAIATALRYSERVDRMVLMGAAGTRFDVTEGLNA 141
Query: 173 RIGFDSWVDYLLPKTADALKVKLDIACYK----LPTLPAFVFKHILEWG-QALFDH--RK 225
G+ + + ++ LDI Y L ++ ++ G Q F +
Sbjct: 142 VWGYT--------PSIENMRNLLDIFAYDRSLVTDELARLRYEASIQPGFQESFSSMFPE 193
Query: 226 ERKELVETLVISDKDFSVPRFTQKIYLLWGENDKILDMQTARNCKEQVGENATLVSIEKA 285
R+ ++ L SD+D + + ++ G D+++ + ++ E + + A L +
Sbjct: 194 PRQRWIDALASSDED--IKTLPNETLIIHGREDQVVPLSSSLRLGELI-DRAQLHVFGRC 250
Query: 286 GHLPNVERPFVYNR 299
GH +E+ +NR
Sbjct: 251 GHWTQIEQTDRFNR 264
>pdb|3B12|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase D104
Mutant From Burkholderia Sp. Fa1 In Complex With
Fluoroacetate
pdb|3B12|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase D104
Mutant From Burkholderia Sp. Fa1 In Complex With
Fluoroacetate
Length = 304
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 49/113 (43%), Gaps = 10/113 (8%)
Query: 61 AVVFLHAFGFDGILTWQFQVLALAKTYAVYVPDFLFFGGS-----ITDRSERTASFQAEC 115
A++ LH F + W LA Y V D +GGS D + + A
Sbjct: 27 ALLLLHGFP-QNLHMWARVAPLLANEYTVVCADLRGYGGSSKPVGAPDHANYSFRAMASD 85
Query: 116 MVKGLRKLGVKRCTLVGVSYGGMVGFKMAEMYPDLVESL----VATCSVMFTE 164
+ +R LG +R LVG + GG G +MA +PD V SL + VMF E
Sbjct: 86 QRELMRTLGFERFHLVGHARGGRTGHRMALDHPDSVLSLAVLDIIPTYVMFEE 138
>pdb|1CQZ|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CQZ|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CR6|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1CR6|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1EK1|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK1|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK2|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
pdb|1EK2|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
Length = 554
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 49/99 (49%), Gaps = 4/99 (4%)
Query: 61 AVVFLHAFGFDGILTWQFQVLALAKT-YAVYVPDFLFFGGSITDRSERTASFQAEC--MV 117
A+ H F + +W++Q+ ALA+ + V D +G S + + + C MV
Sbjct: 258 ALCLCHGFP-ESWFSWRYQIPALAQAGFRVLAIDMKGYGDSSSPPEIEEYAMELLCKEMV 316
Query: 118 KGLRKLGVKRCTLVGVSYGGMVGFKMAEMYPDLVESLVA 156
L KLG+ + +G + G++ + MA YP+ V ++ +
Sbjct: 317 TFLDKLGIPQAVFIGHDWAGVMVWNMALFYPERVRAVAS 355
>pdb|4F0J|A Chain A, Crystal Structure Of A Probable Hydrolytic Enzyme (Pa3053)
From Pseudomonas Aeruginosa Pao1 At 1.50 A Resolution
Length = 315
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 68/277 (24%), Positives = 106/277 (38%), Gaps = 36/277 (12%)
Query: 52 VPKKATEKHAVVFLHAFGFDGILTWQFQVLALAKT-YAVYVPDFLFFGGSITDRSERTAS 110
PKKA + ++ H F TW+ + LA Y V D + F S + + S
Sbjct: 40 APKKANGR-TILLXHGKNF-CAGTWERTIDVLADAGYRVIAVDQVGFCKS-SKPAHYQYS 96
Query: 111 FQ--AECMVKGLRKLGVKRCTLVGVSYGGMVGFKMAEMYPDLVESLVATCSVMFTESVSN 168
FQ A L +LGV R +++G S GG + + A +YP VE LV + E
Sbjct: 97 FQQLAANTHALLERLGVARASVIGHSXGGXLATRYALLYPRQVERLVLVNPIGL-EDWKA 155
Query: 169 AALERIGFDSWVDYLLPKTADALKVKLDIACYKLPTLPAFVFKHILEWGQALFD-HRKER 227
+ D W L +A+ ++ Y P F W Q +R +
Sbjct: 156 LGVPWRSVDDWYRRDLQTSAEGIRQYQQATYYAGEWRPEFD-----RWVQXQAGXYRGKG 210
Query: 228 KELV--ETLVISDKDFSVP------RFTQKIYLLWGENDKI--------LDMQTARNCKE 271
+E V + + D F+ P R LL GE D +++
Sbjct: 211 RESVAWNSALTYDXIFTQPVVYELDRLQXPTLLLIGEKDNTAIGKDAAPAELKARLGNYA 270
Query: 272 QVGEN-------ATLVSIEKAGHLPNVERPFVYNRKL 301
Q+G++ ATLV GH P ++ P +++ L
Sbjct: 271 QLGKDAARRIPQATLVEFPDLGHTPQIQAPERFHQAL 307
>pdb|1Y37|A Chain A, Structure Of Fluoroacetate Dehalogenase From Burkholderia
Sp. Fa1
pdb|1Y37|B Chain B, Structure Of Fluoroacetate Dehalogenase From Burkholderia
Sp. Fa1
Length = 304
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 48/113 (42%), Gaps = 10/113 (8%)
Query: 61 AVVFLHAFGFDGILTWQFQVLALAKTYAVYVPDFLFFGGS-----ITDRSERTASFQAEC 115
A++ LH F + W LA Y V D +GGS D + + A
Sbjct: 27 ALLLLHGFP-QNLHMWARVAPLLANEYTVVCADLRGYGGSSKPVGAPDHANYSFRAMASD 85
Query: 116 MVKGLRKLGVKRCTLVGVSYGGMVGFKMAEMYPDLVESL----VATCSVMFTE 164
+ +R LG +R LVG GG G +MA +PD V SL + VMF E
Sbjct: 86 QRELMRTLGFERFHLVGHDRGGRTGHRMALDHPDSVLSLAVLDIIPTYVMFEE 138
>pdb|1B6G|A Chain A, Haloalkane Dehalogenase At Ph 5.0 Containing Chloride
Length = 310
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 49/121 (40%), Gaps = 13/121 (10%)
Query: 72 GILTWQFQVLALAKTYA-----VYVPDFLFFGGS--ITDRSERTASFQAECMVKGLRKLG 124
G TW + + +A V PDF FG S D + T F ++ + +L
Sbjct: 55 GEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSDKPVDEEDYTFEFHRNFLLALIERLD 114
Query: 125 VKRCTLVGVSYGGMVGFKMAEMYPDLVESLVATCSVMFTESVSNAALERI------GFDS 178
++ TLV +GG +G + P + L+ + + T+ V+ A GF +
Sbjct: 115 LRNITLVVQDWGGFLGLTLPMADPSRFKRLIIMNAXLMTDPVTQPAFSAFVTQPADGFTA 174
Query: 179 W 179
W
Sbjct: 175 W 175
>pdb|1EDB|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide Ions:
Studies With Halide Compounds Reveal A Halide Binding
Site In The Active Site
pdb|1EDD|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide Ions:
Studies With Halide Compounds Reveal A Halide Binding
Site In The Active Site
pdb|1EDE|A Chain A, Refined X-Ray Structures Of Haloalkane Dehalogenase At Ph
6.2 And Ph 8.2 And Implications For The Reaction
Mechanism
pdb|2DHC|A Chain A, Crystallographic Analysis Of The Catalytic Mechanism Of
Haloalkane Dehalogenase
pdb|2DHE|A Chain A, Crystallographic Analysis Of The Catalytic Mechanism Of
Haloalkane Dehalogenase
pdb|2EDA|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide Ions:
Studies With Halide Compounds Reveal A Halide Binding
Site In The Active Site
pdb|2EDC|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide Ions:
Studies With Halide Compounds Reveal A Halide Binding
Site In The Active Site
pdb|2HAD|A Chain A, Crystal Structure Of Haloalkane Dehalogenase: An Enzyme To
Detoxify Halogenated Alkanes
pdb|2PKY|X Chain X, The Effect Of Deuteration On Protein Structure A High
Resolution Comparison Of Hydrogenous And Perdeuterated
Haloalkane Dehalogenase
pdb|2YXP|X Chain X, The Effect Of Deuteration On Protein Structure A High
Resolution Comparison Of Hydrogenous And Perdeuterated
Haloalkane Dehalogenase
Length = 310
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 49/121 (40%), Gaps = 13/121 (10%)
Query: 72 GILTWQFQVLALAKTYA-----VYVPDFLFFGGS--ITDRSERTASFQAECMVKGLRKLG 124
G TW + + +A V PDF FG S D + T F ++ + +L
Sbjct: 55 GEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSDKPVDEEDYTFEFHRNFLLALIERLD 114
Query: 125 VKRCTLVGVSYGGMVGFKMAEMYPDLVESLVATCSVMFTESVSNAALERI------GFDS 178
++ TLV +GG +G + P + L+ + + T+ V+ A GF +
Sbjct: 115 LRNITLVVQDWGGFLGLTLPMADPSRFKRLIIMNACLMTDPVTQPAFSAFVTQPADGFTA 174
Query: 179 W 179
W
Sbjct: 175 W 175
>pdb|1CIJ|A Chain A, Haloalkane Dehalogenase Soaked With High Concentration Of
Bromide
pdb|1BE0|A Chain A, Haloalkane Dehalogenase At Ph 5.0 Containing Acetic Acid
Length = 310
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 49/121 (40%), Gaps = 13/121 (10%)
Query: 72 GILTWQFQVLALAKTYA-----VYVPDFLFFGGS--ITDRSERTASFQAECMVKGLRKLG 124
G TW + + +A V PDF FG S D + T F ++ + +L
Sbjct: 55 GEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSDKPVDEEDYTFEFHRNFLLALIERLD 114
Query: 125 VKRCTLVGVSYGGMVGFKMAEMYPDLVESLVATCSVMFTESVSNAALERI------GFDS 178
++ TLV +GG +G + P + L+ + + T+ V+ A GF +
Sbjct: 115 LRNITLVVQDWGGFLGLTLPMADPSRFKRLIIMNACLMTDPVTQPAFSAFVTQPADGFTA 174
Query: 179 W 179
W
Sbjct: 175 W 175
>pdb|2DHD|A Chain A, Crystallographic Analysis Of The Catalytic Mechanism Of
Haloalkane Dehalogenase
Length = 310
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 49/121 (40%), Gaps = 13/121 (10%)
Query: 72 GILTWQFQVLALAKTYA-----VYVPDFLFFGGS--ITDRSERTASFQAECMVKGLRKLG 124
G TW + + +A V PDF FG S D + T F ++ + +L
Sbjct: 55 GEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSDKPVDEEDYTFEFHRNFLLALIERLD 114
Query: 125 VKRCTLVGVSYGGMVGFKMAEMYPDLVESLVATCSVMFTESVSNAALERI------GFDS 178
++ TLV +GG +G + P + L+ + + T+ V+ A GF +
Sbjct: 115 LRNITLVVQXWGGFLGLTLPMADPSRFKRLIIMNACLMTDPVTQPAFSAFVTQPADGFTA 174
Query: 179 W 179
W
Sbjct: 175 W 175
>pdb|4DNP|A Chain A, Crystal Structure Of Dad2
Length = 269
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 65/291 (22%), Positives = 111/291 (38%), Gaps = 43/291 (14%)
Query: 34 GMTQKTIDIEPGTILNIWVPKKATEKHAVVFLHAFGFDGILTWQFQVLALAKTYAVYVPD 93
GM Q +D LN+ V + + +V H FG D W + + Y V + D
Sbjct: 2 GMGQTLLDA-----LNVRV--VGSGERVLVLAHGFGTDQS-AWNRILPFFLRDYRVVLYD 53
Query: 94 FLFFGGSITD----RSERTASFQAECMVKGLRKLGVKRCTLVGVSYGGMVGFKMAEMYPD 149
+ G D R T + ++ L LG+ C VG S M+G + P+
Sbjct: 54 LVCAGSVNPDFFDFRRYTTLDPYVDDLLHILDALGIDCCAYVGHSVSAMIGILASIRRPE 113
Query: 150 LVESLV---ATCSVMFTE----SVSNAALERI------GFDSWVDYLLPKTADALKVKLD 196
L L+ A+ + E +E++ +++WV+ P L V D
Sbjct: 114 LFSKLILIGASPRFLNDEDYHGGFEQGEIEKVFSAMEANYEAWVNGFAP-----LAVGAD 168
Query: 197 IACYKLPTLPAFVFKHILEWGQALFDHRKERKELVE-TLVISDKDFSVPRFTQKIYLLWG 255
+ PA V E+ + LF+ R + V T+ SD + ++
Sbjct: 169 V--------PAAV----REFSRTLFNMRPDITLFVSRTVFNSDMRGVLGLVKVPCHIFQT 216
Query: 256 ENDKILDMQTARNCKEQVGENATLVSIEKAGHLPNVERPFVYNRKLKRILA 306
D + A K +G T+ + GHLP++ P + ++L+R L+
Sbjct: 217 ARDHSVPASVATYLKNHLGGKNTVHWLNIEGHLPHLSAPTLLAQELRRALS 267
>pdb|2XT0|A Chain A, Dehalogenase Dppa From Plesiocystis Pacifica Sir-I
Length = 297
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 61/138 (44%), Gaps = 19/138 (13%)
Query: 53 PKKATEKHAVVFLHAFGFDGILTWQFQVLALAKTYA-----VYVPDFLFFGGS--ITDRS 105
P+ A +H + LH G +W F + + V PD FG S TD +
Sbjct: 42 PRDA--EHTFLCLH-----GEPSWSFLYRKMLPVFTAAGGRVVAPDLFGFGRSDKPTDDA 94
Query: 106 ERTASFQAECMVKGLRKLGVKRCTLVGVSYGGMVGFKMAEMYPDLVESLVATCSVMFTES 165
T F ++ L L ++R TLV +GG++G + P LV+ L+ VM T
Sbjct: 95 VYTFGFHRRSLLAFLDALQLERVTLVCQDWGGILGLTLPVDRPQLVDRLI----VMNTAL 150
Query: 166 VSNAALERIGFDSWVDYL 183
+ + GF+SW D++
Sbjct: 151 AVGLSPGK-GFESWRDFV 167
>pdb|3BDI|A Chain A, Crystal Structure Of Predicted Cib-Like Hydrolase
(Np_393672.1) From Thermoplasma Acidophilum At 1.45 A
Resolution
Length = 207
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 8/78 (10%)
Query: 87 YAVYVPDFLFFGGSIT------DRSERTASFQAECMVKGLRKLGVKRCTLVGVSYGGMVG 140
Y VY PD+ FG S + DR + + AE + L+ GV R + G S GG
Sbjct: 57 YNVYAPDYPGFGRSASSEKYGIDRGDLKHA--AEFIRDYLKANGVARSVIXGASXGGGXV 114
Query: 141 FKMAEMYPDLVESLVATC 158
YPD+V+ ++A
Sbjct: 115 IXTTLQYPDIVDGIIAVA 132
>pdb|3P2M|A Chain A, Crystal Structure Of A Novel Esterase Rv0045c From
Mycobacterium Tuberculosis
Length = 330
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 47/97 (48%), Gaps = 8/97 (8%)
Query: 62 VVFLHAFGFDGILTWQFQVLALAK-TYAVYVPDFLFFGGSITDRSERTASFQ--AECMVK 118
V+FLH G + TW ++ L + AV +P G R + S Q +E +
Sbjct: 84 VIFLHGGGQN-AHTWDTVIVGLGEPALAVDLPGH----GHSAWREDGNYSPQLNSETLAP 138
Query: 119 GLRKLGVKRCTLVGVSYGGMVGFKMAEMYPDLVESLV 155
LR+L +VG+S GG+ ++A M PDLV LV
Sbjct: 139 VLRELAPGAEFVVGMSLGGLTAIRLAAMAPDLVGELV 175
>pdb|1HDE|A Chain A, Haloalkane Dehalogenase Mutant With Phe 172 Replaced With
Trp
pdb|1HDE|B Chain B, Haloalkane Dehalogenase Mutant With Phe 172 Replaced With
Trp
Length = 310
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 45/107 (42%), Gaps = 7/107 (6%)
Query: 72 GILTWQFQVLALAKTYA-----VYVPDFLFFGGS--ITDRSERTASFQAECMVKGLRKLG 124
G TW + + +A V PDF FG S D + T F ++ + +L
Sbjct: 55 GEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSDKPVDEEDYTFEFHRNFLLALIERLD 114
Query: 125 VKRCTLVGVSYGGMVGFKMAEMYPDLVESLVATCSVMFTESVSNAAL 171
++ TLV +GG +G + P + L+ + + T+ V+ A
Sbjct: 115 LRNITLVVQDWGGFLGLTLPMADPSRFKRLIIMNACLMTDPVTQPAF 161
>pdb|4DNQ|A Chain A, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|B Chain B, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|C Chain C, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|D Chain D, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|E Chain E, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|F Chain F, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|G Chain G, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|H Chain H, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|I Chain I, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|J Chain J, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|K Chain K, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|L Chain L, Crystal Structure Of Dad2 S96a Mutant
Length = 269
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 64/291 (21%), Positives = 111/291 (38%), Gaps = 43/291 (14%)
Query: 34 GMTQKTIDIEPGTILNIWVPKKATEKHAVVFLHAFGFDGILTWQFQVLALAKTYAVYVPD 93
GM Q +D LN+ V + + +V H FG D W + + Y V + D
Sbjct: 2 GMGQTLLDA-----LNVRV--VGSGERVLVLAHGFGTDQS-AWNRILPFFLRDYRVVLYD 53
Query: 94 FLFFGGSITD----RSERTASFQAECMVKGLRKLGVKRCTLVGVSYGGMVGFKMAEMYPD 149
+ G D R T + ++ L LG+ C VG + M+G + P+
Sbjct: 54 LVCAGSVNPDFFDFRRYTTLDPYVDDLLHILDALGIDCCAYVGHAVSAMIGILASIRRPE 113
Query: 150 LVESLV---ATCSVMFTE----SVSNAALERI------GFDSWVDYLLPKTADALKVKLD 196
L L+ A+ + E +E++ +++WV+ P L V D
Sbjct: 114 LFSKLILIGASPRFLNDEDYHGGFEQGEIEKVFSAMEANYEAWVNGFAP-----LAVGAD 168
Query: 197 IACYKLPTLPAFVFKHILEWGQALFDHRKERKELVE-TLVISDKDFSVPRFTQKIYLLWG 255
+ PA V E+ + LF+ R + V T+ SD + ++
Sbjct: 169 V--------PAAV----REFSRTLFNMRPDITLFVSRTVFNSDMRGVLGLVKVPCHIFQT 216
Query: 256 ENDKILDMQTARNCKEQVGENATLVSIEKAGHLPNVERPFVYNRKLKRILA 306
D + A K +G T+ + GHLP++ P + ++L+R L+
Sbjct: 217 ARDHSVPASVATYLKNHLGGKNTVHWLNIEGHLPHLSAPTLLAQELRRALS 267
>pdb|1J1I|A Chain A, Crystal Structure Of A His-Tagged Serine Hydrolase
Involved In The Carbazole Degradation (Carc Enzyme)
Length = 296
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 52/233 (22%), Positives = 90/233 (38%), Gaps = 31/233 (13%)
Query: 75 TWQFQVLALAKTYAVYVPDFLFFGGSITDRSERTASFQAECMVKGLRKLGVK-RCTLVGV 133
W+ + LA+ Y V D L FG + E T + + ++ + + ++VG
Sbjct: 54 NWRNVIPILARHYRVIAMDMLGFGKTAKPDIEYTQDRRIRHLHDFIKAMNFDGKVSIVGN 113
Query: 134 SYGGMVGFKMAEMYPDLVESLVATCSVMFTESVSNAALERIGFD----SWVDYLLPKTAD 189
S GG G ++ ++ +LV +LV S + I +D V + T D
Sbjct: 114 SMGGATGLGVSVLHSELVNALVLMGSAGLVVEIHEDLRPIINYDFTREGMVHLVKALTND 173
Query: 190 ALKVKLDIACYKL------PTLPAFV--FKHILEWGQALFDHRKERKELVETLVISDKDF 241
K+ + + T A+V + I E G +D RK V TLV+ KD
Sbjct: 174 GFKIDDAMINSRYTYATDEATRKAYVATMQWIREQGGLFYDPEFIRKVQVPTLVVQGKD- 232
Query: 242 SVPRFTQKIYLLWGENDKILDMQTARNCKEQVGENATLVSIEKAGHLPNVERP 294
DK++ ++TA + + ++ + I GH +E P
Sbjct: 233 ----------------DKVVPVETAYKFLDLIDDSWGYI-IPHCGHWAMIEHP 268
>pdb|1BEE|A Chain A, Haloalkane Dehalogenase Mutant With Trp 175 Replaced By
Tyr
pdb|1BEZ|A Chain A, Haloalkane Dehalogenase Mutant With Trp 175 Replaced By
Tyr At Ph 5
Length = 310
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 45/107 (42%), Gaps = 7/107 (6%)
Query: 72 GILTWQFQVLALAKTYA-----VYVPDFLFFGGS--ITDRSERTASFQAECMVKGLRKLG 124
G TW + + +A V PDF FG S D + T F ++ + +L
Sbjct: 55 GEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSDKPVDEEDYTFEFHRNFLLALIERLD 114
Query: 125 VKRCTLVGVSYGGMVGFKMAEMYPDLVESLVATCSVMFTESVSNAAL 171
++ TLV +GG +G + P + L+ + + T+ V+ A
Sbjct: 115 LRNITLVVQDWGGFLGLTLPMADPSRFKRLIIMNACLMTDPVTQPAF 161
>pdb|3W04|A Chain A, Crystal Structure Of Oryza Sativa Dwarf14 (d14)
pdb|3W04|B Chain B, Crystal Structure Of Oryza Sativa Dwarf14 (d14)
pdb|3W05|A Chain A, Crystal Structure Of Oryza Sativa Dwarf14 (d14) In Complex
With Pmsf
pdb|3W05|B Chain B, Crystal Structure Of Oryza Sativa Dwarf14 (d14) In Complex
With Pmsf
Length = 266
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 64/278 (23%), Positives = 106/278 (38%), Gaps = 38/278 (13%)
Query: 47 ILNIWVPKKATEKHAVVFLHAFGFDGILTWQFQVLALAKTYAVYVPDFLFFGGSITDRSE 106
ILN+ V + + VV H FG D W + L + + V + D + G D +
Sbjct: 7 ILNVRV--VGSGERVVVLSHGFGTDQS-AWSRVLPYLTRDHRVVLYDLVCAGSVNPDHFD 63
Query: 107 --RTASFQA--ECMVKGLRKLGVKRCTLVGVSYGGMVGFKMAEMYPDLVESLV--ATCSV 160
R + A + ++ L L + RC VG S M+G + PDL LV
Sbjct: 64 FRRYDNLDAYVDDLLAILDALRIPRCAFVGHSVSAMIGILASIRRPDLFAKLVLIGASPR 123
Query: 161 MFTESVSNAA--LERI---------GFDSWVDYLLPKTADALKVKLDIACYKLPTLPAFV 209
+S + LE I + +W P L V D+ PA V
Sbjct: 124 FLNDSDYHGGFELEEIQQVFDAMGANYSAWATGYAP-----LAVGADV--------PAAV 170
Query: 210 FKHILEWGQALFDHRKERK-ELVETLVISDKDFSVPRFTQKIYLLWGENDKILDMQTARN 268
E+ + LF+ R + + +T+ +D + ++ D + A
Sbjct: 171 ----QEFSRTLFNMRPDISLHVCQTVFKTDLRGVLGMVRAPCVVVQTTRDVSVPASVAAY 226
Query: 269 CKEQVGENATLVSIEKAGHLPNVERPFVYNRKLKRILA 306
K +G T+ ++ GHLP++ P + + L+R LA
Sbjct: 227 LKAHLGGRTTVEFLQTEGHLPHLSAPSLLAQVLRRALA 264
>pdb|4IHA|A Chain A, Crystal Structure Of Rice Dwarf14 (d14) In Complex With A
Gr24 Hydrolysis Intermediate
pdb|4IHA|B Chain B, Crystal Structure Of Rice Dwarf14 (d14) In Complex With A
Gr24 Hydrolysis Intermediate
pdb|4IH9|A Chain A, Crystal Structure Of Rice Dwarf14 (d14)
pdb|4IH9|B Chain B, Crystal Structure Of Rice Dwarf14 (d14)
Length = 268
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 64/278 (23%), Positives = 106/278 (38%), Gaps = 38/278 (13%)
Query: 47 ILNIWVPKKATEKHAVVFLHAFGFDGILTWQFQVLALAKTYAVYVPDFLFFGGSITDRSE 106
ILN+ V + + VV H FG D W + L + + V + D + G D +
Sbjct: 9 ILNVRV--VGSGERVVVLSHGFGTDQS-AWSRVLPYLTRDHRVVLYDLVCAGSVNPDHFD 65
Query: 107 --RTASFQA--ECMVKGLRKLGVKRCTLVGVSYGGMVGFKMAEMYPDLVESLV--ATCSV 160
R + A + ++ L L + RC VG S M+G + PDL LV
Sbjct: 66 FRRYDNLDAYVDDLLAILDALRIPRCAFVGHSVSAMIGILASIRRPDLFAKLVLIGASPR 125
Query: 161 MFTESVSNAA--LERI---------GFDSWVDYLLPKTADALKVKLDIACYKLPTLPAFV 209
+S + LE I + +W P L V D+ PA V
Sbjct: 126 FLNDSDYHGGFELEEIQQVFDAMGANYSAWATGYAP-----LAVGADV--------PAAV 172
Query: 210 FKHILEWGQALFDHRKERK-ELVETLVISDKDFSVPRFTQKIYLLWGENDKILDMQTARN 268
E+ + LF+ R + + +T+ +D + ++ D + A
Sbjct: 173 ----QEFSRTLFNMRPDISLHVCQTVFKTDLRGVLGMVRAPCVVVQTTRDVSVPASVAAY 228
Query: 269 CKEQVGENATLVSIEKAGHLPNVERPFVYNRKLKRILA 306
K +G T+ ++ GHLP++ P + + L+R LA
Sbjct: 229 LKAHLGGRTTVEFLQTEGHLPHLSAPSLLAQVLRRALA 266
>pdb|1C4X|A Chain A, 2-Hydroxy-6-Oxo-6-Phenylhexa-2,4-Dienoate Hydrolase (Bphd)
From Rhodococcus Sp. Strain Rha1
Length = 285
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 54/262 (20%), Positives = 100/262 (38%), Gaps = 51/262 (19%)
Query: 61 AVVFLHAFG--FDGILTWQFQVLALAKTYAVYVPDFLFFGGSITDRSERTASFQAECMV- 117
AVV LH G W+ + LA+ + V PD + FG +SE ++ M
Sbjct: 31 AVVLLHGAGPGAHAASNWRPIIPDLAENFFVVAPDLIGFG-----QSEYPETYPGHIMSW 85
Query: 118 KGLR---------KLGVKRCTLVGVSYGGMVGFKMAEMYPDLVESLVATCSVMFTESVSN 168
G+R G+++ +VG S GG V ++ P+ + + SV +
Sbjct: 86 VGMRVEQILGLMNHFGIEKSHIVGNSMGGAVTLQLVVEAPERFDKVALMGSVGAPMNARP 145
Query: 169 AALERIGFDSWVDYLL-----------------PKTADALKVKLDIACYKLPTLPAFVFK 211
L R+ + D L P + +K + ++A
Sbjct: 146 PELARL-LAFYADPRLTPYRELIHSFVYDPENFPGMEEIVKSRFEVAND----------P 194
Query: 212 HILEWGQALFDHRKERKELVETLVISDKDFSVPRFTQKIYLLWGENDKILDMQTARNCKE 271
+ + +F+ K +E+LVI R + + G D+I+ + T+ +
Sbjct: 195 EVRRIQEVMFE---SMKAGMESLVIPPATLG--RLPHDVLVFHGRQDRIVPLDTSLYLTK 249
Query: 272 QVGENATLVSIEKAGHLPNVER 293
+ ++A LV +++ GH +ER
Sbjct: 250 HL-KHAELVVLDRCGHWAQLER 270
>pdb|4ETW|A Chain A, Structure Of The Enzyme-Acp Substrate Gatekeeper Complex
Required For Biotin Synthesis
pdb|4ETW|C Chain C, Structure Of The Enzyme-Acp Substrate Gatekeeper Complex
Required For Biotin Synthesis
Length = 264
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 50/111 (45%), Gaps = 6/111 (5%)
Query: 49 NIWVPKKATEKHAVVFLHAFGFDGILTWQFQVLALAKTYAVYVPDFLFFGGSITDRSERT 108
NIW K +V LH +G + + W+ L+ + +++ D FG RS
Sbjct: 3 NIWWQTKGQGNVHLVLLHGWGLNAEV-WRCIDEELSSHFTLHLVDLPGFG-----RSRGF 56
Query: 109 ASFQAECMVKGLRKLGVKRCTLVGVSYGGMVGFKMAEMYPDLVESLVATCS 159
+ M + + + + +G + GG+V ++A +P+ V++LV S
Sbjct: 57 GALSLADMAEAVLQQAPDKAIWLGWALGGLVASQIALTHPERVQALVTVAS 107
>pdb|4G5X|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
pdb|4G5X|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
pdb|4G9E|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
Complexed With N-butanoyl Homoserine
pdb|4G9E|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
Complexed With N-butanoyl Homoserine
Length = 279
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 53/231 (22%), Positives = 91/231 (39%), Gaps = 20/231 (8%)
Query: 83 LAKTYAVYVPDFLFFGGSI----TDRSERTASFQAECMVKGLRKLGVKRCTLVGVSYGGM 138
+ K + V PD G S DRS + A+ M + +++LG+ + G S GG
Sbjct: 48 IGKKWRVIAPDLPGHGKSTDAIDPDRSYSMEGY-ADAMTEVMQQLGIADAVVFGWSLGGH 106
Query: 139 VGFKMAEMYPDLVESLVATCSVMFTESVSNAALERIGFDSWVDYLLPKTADALKVKLDIA 198
+G +M YP++ ++ + E V GF S D L + + D+
Sbjct: 107 IGIEMIARYPEMRGLMITGTPPVAREEVGQ------GFKSGPDMAL--AGQEIFSERDVE 158
Query: 199 CYKLPTLPAFVFKHILEWGQALFDHRKER---KELVETLVISDKDFSVPRFTQKIYLLWG 255
Y T +L+ A D R R ++ + +D V I ++ G
Sbjct: 159 SYARSTCGEPFEASLLDI-VARTDGRARRIMFEKFGSGTGGNQRDI-VAEAQLPIAVVNG 216
Query: 256 ENDKILDMQTARNCK-EQVGENATLVSIEKAGHLPNVERPFVYNRKLKRIL 305
++ +++ K + E T V I+ AGH P E P ++ L R +
Sbjct: 217 RDEPFVELDFVSKVKFGNLWEGKTHV-IDNAGHAPFREAPAEFDAYLARFI 266
>pdb|4G8C|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant Complexed With N-hexanoyl Homoserine
pdb|4G8C|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant Complexed With N-hexanoyl Homoserine
pdb|4G9G|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant
pdb|4G9G|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant
Length = 279
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 45/106 (42%), Gaps = 11/106 (10%)
Query: 83 LAKTYAVYVPDFLFFGGSI----TDRSERTASFQAECMVKGLRKLGVKRCTLVGVSYGGM 138
+ K + V PD G S DRS + A+ M + +++LG+ + G S GG
Sbjct: 48 IGKKWRVIAPDLPGHGKSTDAIDPDRSYSMEGY-ADAMTEVMQQLGIADAVVFGWSLGGH 106
Query: 139 VGFKMAEMYPDLVESLVATCSVMFTESVSNAALERIGFDSWVDYLL 184
+G +M YP++ ++ + E V GF S D L
Sbjct: 107 IGIEMIARYPEMRGLMITGTPPVAREEVGQ------GFKSGPDMAL 146
>pdb|4G8B|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
S102g Mutant Complexed With N-hexanoyl Homoserine
Lactone
pdb|4G8B|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
S102g Mutant Complexed With N-hexanoyl Homoserine
Lactone
pdb|4G8D|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
S102g Mutant
pdb|4G8D|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
S102g Mutant
Length = 279
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 52/231 (22%), Positives = 90/231 (38%), Gaps = 20/231 (8%)
Query: 83 LAKTYAVYVPDFLFFGGSI----TDRSERTASFQAECMVKGLRKLGVKRCTLVGVSYGGM 138
+ K + V PD G S DRS + A+ M + +++LG+ + G GG
Sbjct: 48 IGKKWRVIAPDLPGHGKSTDAIDPDRSYSMEGY-ADAMTEVMQQLGIADAVVFGWGLGGH 106
Query: 139 VGFKMAEMYPDLVESLVATCSVMFTESVSNAALERIGFDSWVDYLLPKTADALKVKLDIA 198
+G +M YP++ ++ + E V GF S D L + + D+
Sbjct: 107 IGIEMIARYPEMRGLMITGTPPVAREEVGQ------GFKSGPDMAL--AGQEIFSERDVE 158
Query: 199 CYKLPTLPAFVFKHILEWGQALFDHRKER---KELVETLVISDKDFSVPRFTQKIYLLWG 255
Y T +L+ A D R R ++ + +D V I ++ G
Sbjct: 159 SYARSTCGEPFEASLLDI-VARTDGRARRIMFEKFGSGTGGNQRDI-VAEAQLPIAVVNG 216
Query: 256 ENDKILDMQTARNCK-EQVGENATLVSIEKAGHLPNVERPFVYNRKLKRIL 305
++ +++ K + E T V I+ AGH P E P ++ L R +
Sbjct: 217 RDEPFVELDFVSKVKFGNLWEGKTHV-IDNAGHAPFREAPAEFDAYLARFI 266
>pdb|1M33|A Chain A, Crystal Structure Of Bioh At 1.7 A
Length = 258
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 48/111 (43%), Gaps = 6/111 (5%)
Query: 49 NIWVPKKATEKHAVVFLHAFGFDGILTWQFQVLALAKTYAVYVPDFLFFGGSITDRSERT 108
NIW K +V LH +G + + W+ L+ + +++ D FG RS
Sbjct: 3 NIWWQTKGQGNVHLVLLHGWGLNAEV-WRCIDEELSSHFTLHLVDLPGFG-----RSRGF 56
Query: 109 ASFQAECMVKGLRKLGVKRCTLVGVSYGGMVGFKMAEMYPDLVESLVATCS 159
+ + + + + +G S GG+V ++A +P+ V +LV S
Sbjct: 57 GALSLADXAEAVLQQAPDKAIWLGWSLGGLVASQIALTHPERVRALVTVAS 107
>pdb|4IH4|A Chain A, Crystal Structure Of Arabidopsis Dwarf14 Orthologue, Atd14
pdb|4IH4|B Chain B, Crystal Structure Of Arabidopsis Dwarf14 Orthologue, Atd14
pdb|4IH4|C Chain C, Crystal Structure Of Arabidopsis Dwarf14 Orthologue, Atd14
pdb|4IH4|D Chain D, Crystal Structure Of Arabidopsis Dwarf14 Orthologue, Atd14
Length = 267
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 53/252 (21%), Positives = 98/252 (38%), Gaps = 15/252 (5%)
Query: 62 VVFL-HAFGFDGILTWQFQVLALAKTYAVYVPDFLFFGGSITDRSE----RTASFQAECM 116
++FL H FG D W + + Y V + D + G D + T + +
Sbjct: 21 ILFLAHGFGTDQS-AWHLILPYFTQNYRVVLYDLVCAGSVNPDYFDFNRYTTLDPYVDDL 79
Query: 117 VKGLRKLGVKRCTLVGVSYGGMVGFKMAEMYPDLVESLVATCSVMFTESVSNAALERIGF 176
+ + LG++ C VG S M+G + P+L L+ + F+ N GF
Sbjct: 80 LNIVDSLGIQNCAYVGHSVSAMIGIIASIRRPELFSKLIL---IGFSPRFLNDEDYHGGF 136
Query: 177 DSWVDYLLPKTADALKVKLDIACYKLPTLP--AFVFKHILEWGQALFDHRKERKELVE-T 233
+ + K A++ + + L A V + E+ + LF+ R + V T
Sbjct: 137 EEGE---IEKVFSAMEANYEAWVHGFAPLAVGADVPAAVREFSRTLFNMRPDISLFVSRT 193
Query: 234 LVISDKDFSVPRFTQKIYLLWGENDKILDMQTARNCKEQVGENATLVSIEKAGHLPNVER 293
+ SD + ++ D + A + +G + T+ +++ GHLP +
Sbjct: 194 VFNSDLRGVLGLVRVPTCVIQTAKDVSVPASVAEYLRSHLGGDTTVETLKTEGHLPQLSA 253
Query: 294 PFVYNRKLKRIL 305
P + L+R L
Sbjct: 254 PAQLAQFLRRAL 265
>pdb|3OM8|A Chain A, The Crystal Structure Of A Hydrolase From Pseudomonas
Aeruginosa Pa01
pdb|3OM8|B Chain B, The Crystal Structure Of A Hydrolase From Pseudomonas
Aeruginosa Pa01
Length = 266
Score = 36.2 bits (82), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 38/80 (47%)
Query: 76 WQFQVLALAKTYAVYVPDFLFFGGSITDRSERTASFQAECMVKGLRKLGVKRCTLVGVSY 135
W Q+ AL + + V D G S T + E +++ L L V+R +G+S
Sbjct: 43 WDAQLPALTRHFRVLRYDARGHGASSVPPGPYTLARLGEDVLELLDALEVRRAHFLGLSL 102
Query: 136 GGMVGFKMAEMYPDLVESLV 155
GG+VG +A P +E LV
Sbjct: 103 GGIVGQWLALHAPQRIERLV 122
>pdb|2XUA|A Chain A, Crystal Structure Of The Enol-Lactonase From Burkholderia
Xenovorans Lb400
pdb|2XUA|H Chain H, Crystal Structure Of The Enol-Lactonase From Burkholderia
Xenovorans Lb400
Length = 266
Score = 35.8 bits (81), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 48/107 (44%), Gaps = 8/107 (7%)
Query: 58 EKHA----VVFLHAFGFDGILTWQFQVLALAKTYAVYVPDFLFFGGSITDRSERTASFQA 113
E+H +V ++ G D + W QV AL+K + V D G S + T Q
Sbjct: 21 ERHGNAPWIVLSNSLGTD-LSXWAPQVAALSKHFRVLRYDTRGHGHSEAPKGPYTIE-QL 78
Query: 114 ECMVKGLRK-LGVKRCTLVGVSYGGMVGFKMAEMYPDLVESLVATCS 159
V GL L + R G+S GG+ G +A + D +E VA C+
Sbjct: 79 TGDVLGLXDTLKIARANFCGLSXGGLTGVALAARHADRIER-VALCN 124
>pdb|4HRX|A Chain A, Crystal Structure Of Kai2
pdb|4HRY|A Chain A, The Structure Of Arabidopsis Thaliana Kai2
pdb|4HTA|A Chain A, The Structure Of The Karrikin Insensitive (kai2) Protein
In Arabidopsis Thaliana
Length = 288
Score = 35.0 bits (79), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 53/242 (21%), Positives = 94/242 (38%), Gaps = 17/242 (7%)
Query: 62 VVFLHAFGFDGILTWQFQVLALAKTYAVYVPDFLFFGGSITD--RSERTASFQAEC--MV 117
+V H FG D + W+ V L Y V + D + G + D +R ++ + ++
Sbjct: 38 IVLGHGFGTDQSV-WKHLVPHLVDDYRVVLYDNMGAGTTNPDYFDFDRYSNLEGYSFDLI 96
Query: 118 KGLRKLGVKRCTLVGVSYGGMVGFKMAEMYPDLVESLVA-TCSVMFTESVSNAALERIGF 176
L L ++ C VG S M+G + PDL +V + S + V GF
Sbjct: 97 AILEDLKIESCIFVGHSVSAMIGVLASLNRPDLFSKIVMISASPRYVNDVDYQG----GF 152
Query: 177 DSWVDYLLPKTADALKVKLDIACYKLPTLPA---FVFKHILEWGQALFDHRKERKELV-E 232
+ L + +A++ C L + E+ + LF+ R + V +
Sbjct: 153 EQED---LNQLFEAIRSNYKAWCLGFAPLAVGGDMDSIAVQEFSRTLFNMRPDIALSVGQ 209
Query: 233 TLVISDKDFSVPRFTQKIYLLWGENDKILDMQTARNCKEQVGENATLVSIEKAGHLPNVE 292
T+ SD +P T ++L D + + + +G + + I GHLP +
Sbjct: 210 TIFQSDMRQILPFVTVPCHILQSVKDLAVPVVVSEYLHANLGCESVVEVIPSDGHLPQLS 269
Query: 293 RP 294
P
Sbjct: 270 SP 271
>pdb|4IH1|A Chain A, Crystal Structure Of Karrikin Insensitive 2 (kai2) From
Arabidopsis Thaliana
Length = 270
Score = 35.0 bits (79), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 53/242 (21%), Positives = 94/242 (38%), Gaps = 17/242 (7%)
Query: 62 VVFLHAFGFDGILTWQFQVLALAKTYAVYVPDFLFFGGSITD--RSERTASFQAEC--MV 117
+V H FG D + W+ V L Y V + D + G + D +R ++ + ++
Sbjct: 20 IVLGHGFGTDQSV-WKHLVPHLVDDYRVVLYDNMGAGTTNPDYFDFDRYSNLEGYSFDLI 78
Query: 118 KGLRKLGVKRCTLVGVSYGGMVGFKMAEMYPDLVESLVA-TCSVMFTESVSNAALERIGF 176
L L ++ C VG S M+G + PDL +V + S + V GF
Sbjct: 79 AILEDLKIESCIFVGHSVSAMIGVLASLNRPDLFSKIVMISASPRYVNDVDYQG----GF 134
Query: 177 DSWVDYLLPKTADALKVKLDIACYKLPTLPA---FVFKHILEWGQALFDHRKERKELV-E 232
+ L + +A++ C L + E+ + LF+ R + V +
Sbjct: 135 EQED---LNQLFEAIRSNYKAWCLGFAPLAVGGDMDSIAVQEFSRTLFNMRPDIALSVGQ 191
Query: 233 TLVISDKDFSVPRFTQKIYLLWGENDKILDMQTARNCKEQVGENATLVSIEKAGHLPNVE 292
T+ SD +P T ++L D + + + +G + + I GHLP +
Sbjct: 192 TIFQSDMRQILPFVTVPCHILQSVKDLAVPVVVSEYLHANLGCESVVEVIPSDGHLPQLS 251
Query: 293 RP 294
P
Sbjct: 252 SP 253
>pdb|1EHY|A Chain A, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
pdb|1EHY|B Chain B, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
pdb|1EHY|C Chain C, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
pdb|1EHY|D Chain D, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
Length = 294
Score = 34.7 bits (78), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
Query: 76 WQFQVLALAKTYAVYVPDFLFFGGS----ITDRSERTASFQAECMVKGLRKLGVKRCTLV 131
W + LA+ Y V VPD FG S + D S+ + A+ L LG+++ +V
Sbjct: 45 WSKVIGPLAEHYDVIVPDLRGFGDSEKPDLNDLSKYSLDKAADDQAALLDALGIEKAYVV 104
Query: 132 GVSYGGMVGFKMAEMYPDLV 151
G + +V K Y D V
Sbjct: 105 GHDFAAIVLHKFIRKYSDRV 124
>pdb|4B9A|A Chain A, Structure Of A Putative Epoxide Hydrolase From Pseudomonas
Aeruginosa.
pdb|4B9E|A Chain A, Structure Of A Putative Epoxide Hydrolase From Pseudomonas
Aeruginosa, With Bound Mfa
Length = 301
Score = 34.7 bits (78), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 44/90 (48%), Gaps = 3/90 (3%)
Query: 74 LTWQFQVLALAKTYAVYVPDFLFFGGSIT---DRSERTASFQAECMVKGLRKLGVKRCTL 130
L W LA+ Y+V + D +G S + ++ + + A ++ + +LG +R +
Sbjct: 45 LAWHRIAPRLAEDYSVVLADLRGYGESRALDEEGADYSKAALARDQLETMGQLGFERFAV 104
Query: 131 VGVSYGGMVGFKMAEMYPDLVESLVATCSV 160
+G G VG+++A +P V + V+ V
Sbjct: 105 IGHDRGARVGYRLALDHPQAVAAFVSLTVV 134
>pdb|3W06|A Chain A, Crystal Structure Of Arabidopsis Thaliana Dwarf14 Like
(atd14l)
Length = 272
Score = 34.7 bits (78), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 53/242 (21%), Positives = 94/242 (38%), Gaps = 17/242 (7%)
Query: 62 VVFLHAFGFDGILTWQFQVLALAKTYAVYVPDFLFFGGSITD--RSERTASFQAEC--MV 117
+V H FG D + W+ V L Y V + D + G + D +R ++ + ++
Sbjct: 22 IVLGHGFGTDQSV-WKHLVPHLVDDYRVVLYDNMGAGTTNPDYFDFDRYSNLEGYSFDLI 80
Query: 118 KGLRKLGVKRCTLVGVSYGGMVGFKMAEMYPDLVESLVA-TCSVMFTESVSNAALERIGF 176
L L ++ C VG S M+G + PDL +V + S + V GF
Sbjct: 81 AILEDLKIESCIFVGHSVSAMIGVLASLNRPDLFSKIVMISASPRYVNDVDYQG----GF 136
Query: 177 DSWVDYLLPKTADALKVKLDIACYKLPTLPA---FVFKHILEWGQALFDHRKERKELV-E 232
+ L + +A++ C L + E+ + LF+ R + V +
Sbjct: 137 EQED---LNQLFEAIRSNYKAWCLGFAPLAVGGDMDSIAVQEFSRTLFNMRPDIALSVGQ 193
Query: 233 TLVISDKDFSVPRFTQKIYLLWGENDKILDMQTARNCKEQVGENATLVSIEKAGHLPNVE 292
T+ SD +P T ++L D + + + +G + + I GHLP +
Sbjct: 194 TIFQSDMRQILPFVTVPCHILQSVKDLAVPVVVSEYLHANLGCESVVEVIPSDGHLPQLS 253
Query: 293 RP 294
P
Sbjct: 254 SP 255
>pdb|2VF2|A Chain A, X-Ray Crystal Structure Of Hsad From Mycobacterium
Tuberculosis
pdb|2VF2|B Chain B, X-Ray Crystal Structure Of Hsad From Mycobacterium
Tuberculosis
Length = 311
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 62/263 (23%), Positives = 97/263 (36%), Gaps = 45/263 (17%)
Query: 62 VVFLHAFGFDGILTW---QFQVLALAKTYAVYVPDFLFFGGSITDRSERTASFQ--AECM 116
VV LH G G +W + LA+ + V D +G S D+ F A
Sbjct: 59 VVLLHGGG-PGAASWTNFSRNIAVLARHFHVLAVDQPGYGHS--DKRAEHGQFNRYAAMA 115
Query: 117 VKGL-RKLGVKRCTLVGVSYGGMVGFKMAEMYPDLVESLV----ATCSVMFTESVSNAAL 171
+KGL +LG+ R LVG S GG + A YP LV S+ +
Sbjct: 116 LKGLFDQLGLGRVPLVGNSLGGGTAVRFALDYPARAGRLVLMGPGGLSINLFAPDPTEGV 175
Query: 172 ERIGFDSWVDYLLPKTADALKVKLDIACYKLPTLPAFVFKHILEWGQALFDHRKERKELV 231
+R+ + + T + L+ L + Y K+++ L D R
Sbjct: 176 KRL-----SKFSVAPTRENLEAFLRVMVYD---------KNLIT--PELVDQRFALASTP 219
Query: 232 ETLV--------ISDKDF-------SVPRFTQKIYLLWGENDKILDMQTARNCKEQVGEN 276
E+L + DF V R Q + L+WG D++ + A + +
Sbjct: 220 ESLTATRAMGKSFAGADFEAGMMWREVYRLRQPVLLIWGREDRVNPLDGALVALKTI-PR 278
Query: 277 ATLVSIEKAGHLPNVERPFVYNR 299
A L + GH VE+ +N+
Sbjct: 279 AQLHVFGQCGHWVQVEKFDEFNK 301
>pdb|3PF8|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536
pdb|3PF8|B Chain B, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536
Length = 270
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 69/163 (42%), Gaps = 34/163 (20%)
Query: 125 VKRCTLVGVSYGGMVGFKMAEMYPDLVESLVATCSVMFTESVSNAALERIGFDSWVDYLL 184
V+ LVG S GG+V +A +YPDL++ +V ++ ALE G V Y
Sbjct: 118 VRNIYLVGHSQGGVVASMLAGLYPDLIKKVVLLAPAA---TLKGDALE--GNTQGVTYNP 172
Query: 185 PKTADALKVKLDIACYKLPTLPAFVFKHILEWGQALFDHRKERKELVETLVISDKDFSVP 244
D L K D+ TL F + + + L I +
Sbjct: 173 DHIPDRLPFK-DL------TLGGFYLR------------------IAQQLPIYEVS---A 204
Query: 245 RFTQKIYLLWGENDKILDMQTARNCKEQVGENATLVSIEKAGH 287
+FT+ + L+ G +D ++ ++ +Q+ +N+TL IE A H
Sbjct: 205 QFTKPVCLIHGTDDTVVSPNASKKY-DQIYQNSTLHLIEGADH 246
>pdb|3U1T|A Chain A, Haloalkane Dehalogenase, Dmma, Of Marine Microbial Origin
pdb|3U1T|B Chain B, Haloalkane Dehalogenase, Dmma, Of Marine Microbial Origin
Length = 309
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 59/160 (36%), Gaps = 15/160 (9%)
Query: 35 MTQKTIDIEPGTILNIWVPKKATEKHAVVFLHAFGFDGILTWQFQVLALAKTYAVYVPDF 94
++T+++E TI + V+FLH L +A Y PD
Sbjct: 9 FAKRTVEVEGATIAYV----DEGSGQPVLFLHGNPTSSYLWRNIIPYVVAAGYRAVAPDL 64
Query: 95 LFFGGSITDRSERTASFQAECMVKGLRKLGVKRCTLVGVSYGGMVGFKMAEMYPDLVESL 154
+ G S E + LG+ LV +G ++G + A + PD V
Sbjct: 65 IGXGDSAKPDIEYRLQDHVAYXDGFIDALGLDDXVLVIHDWGSVIGXRHARLNPDRV--- 121
Query: 155 VATCSVMFTESVSNAALERIGFDSWVDYLLP-----KTAD 189
+V F E++ AL +++ L P +TAD
Sbjct: 122 ---AAVAFXEALVPPALPXPSYEAXGPQLGPLFRDLRTAD 158
>pdb|3KXP|A Chain A, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|B Chain B, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|C Chain C, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|D Chain D, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|E Chain E, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|F Chain F, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|G Chain G, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|H Chain H, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|I Chain I, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|J Chain J, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|K Chain K, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|L Chain L, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
Length = 314
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Query: 98 GGSITDRSER--TASFQAECMVKGLRKLGVKRCTLVGVSYGGMVGFKMAEMYPDLVESLV 155
G ++D+ E A+ A+ + +R L LVG S G A YPDLV S+V
Sbjct: 104 GHGLSDKPETGYEANDYADDIAGLIRTLARGHAILVGHSLGARNSVTAAAKYPDLVRSVV 163
Query: 156 ATCSVMFTESVSNAALE 172
A + E+ + ALE
Sbjct: 164 AIDFTPYIETEALDALE 180
>pdb|3QM1|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With
Ethylferulate, Form Ii
Length = 265
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 69/163 (42%), Gaps = 34/163 (20%)
Query: 125 VKRCTLVGVSYGGMVGFKMAEMYPDLVESLVATCSVMFTESVSNAALERIGFDSWVDYLL 184
V+ LVG + GG+V +A +YPDL++ +V ++ ALE G V Y
Sbjct: 118 VRNIYLVGHAQGGVVASMLAGLYPDLIKKVVLLAPAA---TLKGDALE--GNTQGVTYNP 172
Query: 185 PKTADALKVKLDIACYKLPTLPAFVFKHILEWGQALFDHRKERKELVETLVISDKDFSVP 244
D L K D+ TL F + + + L I +
Sbjct: 173 DHIPDRLPFK-DL------TLGGFYLR------------------IAQQLPIYEVS---A 204
Query: 245 RFTQKIYLLWGENDKILDMQTARNCKEQVGENATLVSIEKAGH 287
+FT+ + L+ G +D ++ ++ +Q+ +N+TL IE A H
Sbjct: 205 QFTKPVCLIHGTDDTVVSPNASKKY-DQIYQNSTLHLIEGADH 246
>pdb|2WUD|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis
pdb|2WUD|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis
pdb|2WUE|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopoda
pdb|2WUE|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopoda
pdb|2WUF|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With 4,9dsha
pdb|2WUF|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With 4,9dsha
pdb|2WUG|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopda
pdb|2WUG|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopda
Length = 291
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 61/263 (23%), Positives = 97/263 (36%), Gaps = 45/263 (17%)
Query: 62 VVFLHAFGFDGILTW---QFQVLALAKTYAVYVPDFLFFGGSITDRSERTASFQ--AECM 116
VV LH G G +W + LA+ + V D +G S D+ F A
Sbjct: 39 VVLLHGGG-PGAASWTNFSRNIAVLARHFHVLAVDQPGYGHS--DKRAEHGQFNRYAAMA 95
Query: 117 VKGL-RKLGVKRCTLVGVSYGGMVGFKMAEMYPDLVESLV----ATCSVMFTESVSNAAL 171
+KGL +LG+ R LVG + GG + A YP LV S+ +
Sbjct: 96 LKGLFDQLGLGRVPLVGNALGGGTAVRFALDYPARAGRLVLMGPGGLSINLFAPDPTEGV 155
Query: 172 ERIGFDSWVDYLLPKTADALKVKLDIACYKLPTLPAFVFKHILEWGQALFDHRKERKELV 231
+R+ + + T + L+ L + Y K+++ L D R
Sbjct: 156 KRLS-----KFSVAPTRENLEAFLRVMVYD---------KNLIT--PELVDQRFALASTP 199
Query: 232 ETLV--------ISDKDF-------SVPRFTQKIYLLWGENDKILDMQTARNCKEQVGEN 276
E+L + DF V R Q + L+WG D++ + A + +
Sbjct: 200 ESLTATRAMGKSFAGADFEAGMMWREVYRLRQPVLLIWGREDRVNPLDGALVALKTI-PR 258
Query: 277 ATLVSIEKAGHLPNVERPFVYNR 299
A L + GH VE+ +N+
Sbjct: 259 AQLHVFGQCGHWVQVEKFDEFNK 281
>pdb|3PF9|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant
pdb|3PFB|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With
Ethylferulate
pdb|3PFB|B Chain B, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With
Ethylferulate
pdb|3PFC|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With Ferulic
Acid
pdb|3S2Z|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With Caffeic
Acid
pdb|3S2Z|B Chain B, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With Caffeic
Acid
Length = 270
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 69/163 (42%), Gaps = 34/163 (20%)
Query: 125 VKRCTLVGVSYGGMVGFKMAEMYPDLVESLVATCSVMFTESVSNAALERIGFDSWVDYLL 184
V+ LVG + GG+V +A +YPDL++ +V ++ ALE G V Y
Sbjct: 118 VRNIYLVGHAQGGVVASMLAGLYPDLIKKVVLLAPAA---TLKGDALE--GNTQGVTYNP 172
Query: 185 PKTADALKVKLDIACYKLPTLPAFVFKHILEWGQALFDHRKERKELVETLVISDKDFSVP 244
D L K D+ TL F + + + L I +
Sbjct: 173 DHIPDRLPFK-DL------TLGGFYLR------------------IAQQLPIYEVS---A 204
Query: 245 RFTQKIYLLWGENDKILDMQTARNCKEQVGENATLVSIEKAGH 287
+FT+ + L+ G +D ++ ++ +Q+ +N+TL IE A H
Sbjct: 205 QFTKPVCLIHGTDDTVVSPNASKKY-DQIYQNSTLHLIEGADH 246
>pdb|2OG1|A Chain A, Crystal Structure Of Bphd, A C-C Hydrolase From
Burkholderia Xenovorans Lb400
pdb|2OG1|B Chain B, Crystal Structure Of Bphd, A C-C Hydrolase From
Burkholderia Xenovorans Lb400
pdb|2PU5|A Chain A, Crystal Structure Of A C-C Bond Hydrolase, Bphd, From
Burkholderia Xenovorans Lb400
pdb|2PU5|B Chain B, Crystal Structure Of A C-C Bond Hydrolase, Bphd, From
Burkholderia Xenovorans Lb400
Length = 286
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 68/186 (36%), Gaps = 5/186 (2%)
Query: 117 VKGLRK-LGVKRCTLVGVSYGGMVGFKMAEMYPDLVESLVATCSVMFTESVSNAALERIG 175
VKGL L + R LVG S GG A YPD + L+ S+ A + G
Sbjct: 94 VKGLMDALDIDRAHLVGNSMGGATALNFALEYPDRIGKLILMGPGGLGPSMF-APMPMEG 152
Query: 176 FDSWVDYLLPKTADALKVKLDIACYKLPTLPAFVFKHILEWGQALFDHRKERKELVETLV 235
+ + LK L + Y + + + E Q +H K +
Sbjct: 153 IKLLFKLYAEPSYETLKQMLQVFLYDQSLITEELLQGRWEAIQRQPEHLKNFLISAQKAP 212
Query: 236 ISDKDFS--VPRFTQKIYLLWGENDKILDMQTARNCKEQVGENATLVSIEKAGHLPNVER 293
+S D + + K ++ WG +D+ + + + ++A L K GH E
Sbjct: 213 LSTWDVTARLGEIKAKTFITWGRDDRFVPLDHGLKLLWNI-DDARLHVFSKCGHWAQWEH 271
Query: 294 PFVYNR 299
+NR
Sbjct: 272 ADEFNR 277
>pdb|2B61|A Chain A, Crystal Structure Of Homoserine Transacetylase
Length = 377
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 7/59 (11%)
Query: 120 LRKLGVKRC-TLVGVSYGGMVGFKMAEMYPDLVESLVATCSVMFTESVSNAALERIGFD 177
L LG+ ++G S+GG + A YPD +++V CS ++ + E IGF+
Sbjct: 147 LEHLGISHLKAIIGGSFGGXQANQWAIDYPDFXDNIVNLCSSIYFSA------EAIGFN 199
>pdb|3QIT|A Chain A, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|B Chain B, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|C Chain C, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|D Chain D, Thioesterase Domain From Curacin Biosynthetic Pathway
Length = 286
Score = 32.0 bits (71), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 48/106 (45%), Gaps = 9/106 (8%)
Query: 56 ATEKHAVVF-LHAFGFDGILTWQFQVLALA-KTYAVYVPDFLFFGGSITDRSERTASFQA 113
+ +H VV +H G L WQ L LA + Y V PD FG + E S+ +
Sbjct: 22 GSPEHPVVLCIHGILEQG-LAWQEVALPLAAQGYRVVAPDL--FGHGRSSHLEMVTSYSS 78
Query: 114 ECMV----KGLRKLGVKRCTLVGVSYGGMVGFKMAEMYPDLVESLV 155
+ + +++L + LVG S G M+ +A + P ++ L+
Sbjct: 79 LTFLAQIDRVIQELPDQPLLLVGHSMGAMLATAIASVRPKKIKELI 124
>pdb|1PTO|A Chain A, The Structure Of A Pertussis Toxin-Sugar Complex As A
Model For Receptor Binding
pdb|1PTO|G Chain G, The Structure Of A Pertussis Toxin-Sugar Complex As A
Model For Receptor Binding
Length = 244
Score = 31.6 bits (70), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 248 QKIYLLWGENDKILDMQTARNCKEQVG-ENATLVSIEKA 285
Q + WG ND +L+ T R+C QVG N+ VS +
Sbjct: 29 QNGFTAWGNNDNVLEHLTGRSC--QVGSSNSAFVSTSSS 65
>pdb|1BCP|A Chain A, Binary Complex Of Pertussis Toxin And Atp
pdb|1BCP|G Chain G, Binary Complex Of Pertussis Toxin And Atp
Length = 235
Score = 31.6 bits (70), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 248 QKIYLLWGENDKILDMQTARNCKEQVG-ENATLVSIEKA 285
Q + WG ND +L+ T R+C QVG N+ VS +
Sbjct: 20 QNGFTAWGNNDNVLEHLTGRSC--QVGSSNSAFVSTSSS 56
>pdb|1PRT|A Chain A, The Crystal Structure Of Pertussis Toxin
pdb|1PRT|G Chain G, The Crystal Structure Of Pertussis Toxin
Length = 234
Score = 31.6 bits (70), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 248 QKIYLLWGENDKILDMQTARNCKEQVG-ENATLVSIEKA 285
Q + WG ND +L+ T R+C QVG N+ VS +
Sbjct: 19 QNGFTAWGNNDNVLEHLTGRSC--QVGSSNSAFVSTSSS 55
>pdb|3BF7|A Chain A, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
pdb|3BF7|B Chain B, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
Length = 255
Score = 31.2 bits (69), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 113 AECMVKGLRKLGVKRCTLVGVSYGGMVGFKMAEMYPDLVESLVA 156
A+ +V L L + + T +G S GG + + PD ++ LVA
Sbjct: 68 AQDLVDTLDALQIDKATFIGHSMGGKAVMALTALAPDRIDKLVA 111
>pdb|2ZJF|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Epoxide
Hydrolase B Complexed With An Inhibitor
Length = 362
Score = 31.2 bits (69), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 47/105 (44%), Gaps = 5/105 (4%)
Query: 62 VVFLHAFGFDGILTWQFQVLALAKT-YAVYVPDFLFFGGSITDRSERTASFQ--AECMVK 118
VV LH F + +W+ Q+ ALA Y V D +G S R ++ + +V
Sbjct: 36 VVLLHGFP-ESWYSWRHQIPALAGAGYRVVAIDQRGYGRSSKYRVQKAYRIKELVGDVVG 94
Query: 119 GLRKLGVKRCTLVGVSYGGMVGFKMAEMYPDLVESLVATCSVMFT 163
L G ++ +VG +G V + A ++PD +V SV F
Sbjct: 95 VLDSYGAEQAFVVGHDWGAPVAWTFAWLHPDRCAGVVG-ISVPFA 138
>pdb|2E3J|A Chain A, The Crystal Structure Of Epoxide Hydrolase B (Rv1938) From
Mycobacterium Tuberculosis At 2.1 Angstrom
Length = 356
Score = 31.2 bits (69), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 47/105 (44%), Gaps = 5/105 (4%)
Query: 62 VVFLHAFGFDGILTWQFQVLALAKT-YAVYVPDFLFFGGSITDRSERTASFQ--AECMVK 118
VV LH F + +W+ Q+ ALA Y V D +G S R ++ + +V
Sbjct: 30 VVLLHGFP-ESWYSWRHQIPALAGAGYRVVAIDQRGYGRSSKYRVQKAYRIKELVGDVVG 88
Query: 119 GLRKLGVKRCTLVGVSYGGMVGFKMAEMYPDLVESLVATCSVMFT 163
L G ++ +VG +G V + A ++PD +V SV F
Sbjct: 89 VLDSYGAEQAFVVGHDWGAPVAWTFAWLHPDRCAGVVG-ISVPFA 132
>pdb|2PUH|A Chain A, Crystal Structure Of The S112a Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, In Complex With
Its Substrate Hopda
Length = 286
Score = 31.2 bits (69), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 41/186 (22%), Positives = 68/186 (36%), Gaps = 5/186 (2%)
Query: 117 VKGLRK-LGVKRCTLVGVSYGGMVGFKMAEMYPDLVESLVATCSVMFTESVSNAALERIG 175
VKGL L + R LVG + GG A YPD + L+ S+ A + G
Sbjct: 94 VKGLMDALDIDRAHLVGNAMGGATALNFALEYPDRIGKLILMGPGGLGPSMF-APMPMEG 152
Query: 176 FDSWVDYLLPKTADALKVKLDIACYKLPTLPAFVFKHILEWGQALFDHRKERKELVETLV 235
+ + LK L + Y + + + E Q +H K +
Sbjct: 153 IKLLFKLYAEPSYETLKQMLQVFLYDQSLITEELLQGRWEAIQRQPEHLKNFLISAQKAP 212
Query: 236 ISDKDFS--VPRFTQKIYLLWGENDKILDMQTARNCKEQVGENATLVSIEKAGHLPNVER 293
+S D + + K ++ WG +D+ + + + ++A L K GH E
Sbjct: 213 LSTWDVTARLGEIKAKTFITWGRDDRFVPLDHGLKLLWNI-DDARLHVFSKCGHWAQWEH 271
Query: 294 PFVYNR 299
+NR
Sbjct: 272 ADEFNR 277
>pdb|2RHT|A Chain A, Crystal Structure Of The S112a Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, In Complex With
3-Cl Hopda
pdb|2RHW|A Chain A, Crystal Structure Of The S112a Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, In Complex With
3,10-Di-Fluoro Hopda
pdb|2RI6|A Chain A, Crystal Structure Of S112a Mutant Of A C-C Hydrolase, Bphd
From Burkholderia Xenovorans Lb400
Length = 283
Score = 31.2 bits (69), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 41/186 (22%), Positives = 68/186 (36%), Gaps = 5/186 (2%)
Query: 117 VKGLRK-LGVKRCTLVGVSYGGMVGFKMAEMYPDLVESLVATCSVMFTESVSNAALERIG 175
VKGL L + R LVG + GG A YPD + L+ S+ A + G
Sbjct: 91 VKGLMDALDIDRAHLVGNAMGGATALNFALEYPDRIGKLILMGPGGLGPSMF-APMPMEG 149
Query: 176 FDSWVDYLLPKTADALKVKLDIACYKLPTLPAFVFKHILEWGQALFDHRKERKELVETLV 235
+ + LK L + Y + + + E Q +H K +
Sbjct: 150 IKLLFKLYAEPSYETLKQMLQVFLYDQSLITEELLQGRWEAIQRQPEHLKNFLISAQKAP 209
Query: 236 ISDKDFS--VPRFTQKIYLLWGENDKILDMQTARNCKEQVGENATLVSIEKAGHLPNVER 293
+S D + + K ++ WG +D+ + + + ++A L K GH E
Sbjct: 210 LSTWDVTARLGEIKAKTFITWGRDDRFVPLDHGLKLLWNI-DDARLHVFSKCGHWAQWEH 268
Query: 294 PFVYNR 299
+NR
Sbjct: 269 ADEFNR 274
>pdb|3FSG|A Chain A, Crystal Structure Of AlphaBETA SUPERFAMILY HYDROLASE FROM
OENOCOCCUS Oeni Psu-1
pdb|3FSG|B Chain B, Crystal Structure Of AlphaBETA SUPERFAMILY HYDROLASE FROM
OENOCOCCUS Oeni Psu-1
pdb|3FSG|C Chain C, Crystal Structure Of AlphaBETA SUPERFAMILY HYDROLASE FROM
OENOCOCCUS Oeni Psu-1
Length = 272
Score = 30.8 bits (68), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 43/102 (42%), Gaps = 3/102 (2%)
Query: 62 VVFLHAFGFDGILTWQF-QVLALAKTYAVYVPDFLFFGGSITDRSERTASFQAECMVKGL 120
++FLH D T F + L+ Y D G S S T+ E +++ +
Sbjct: 24 IIFLHGLSLDKQSTXLFFEPLSNVGQYQRIYLDLPGXGNS-DPISPSTSDNVLETLIEAI 82
Query: 121 RKL-GVKRCTLVGVSYGGMVGFKMAEMYPDLVESLVATCSVM 161
++ G +R L G SYGG + +A D + TC V+
Sbjct: 83 EEIIGARRFILYGHSYGGYLAQAIAFHLKDQTLGVFLTCPVI 124
>pdb|3FSG|D Chain D, Crystal Structure Of AlphaBETA SUPERFAMILY HYDROLASE FROM
OENOCOCCUS Oeni Psu-1
Length = 272
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 43/102 (42%), Gaps = 3/102 (2%)
Query: 62 VVFLHAFGFDGILTWQF-QVLALAKTYAVYVPDFLFFGGSITDRSERTASFQAECMVKGL 120
++FLH D T F + L+ Y D G S S T+ E +++ +
Sbjct: 24 IIFLHGLSLDKQSTCLFFEPLSNVGQYQRIYLDLPGXGNS-DPISPSTSDNVLETLIEAI 82
Query: 121 RKL-GVKRCTLVGVSYGGMVGFKMAEMYPDLVESLVATCSVM 161
++ G +R L G SYGG + +A D + TC V+
Sbjct: 83 EEIIGARRFILYGHSYGGYLAQAIAFHLKDQTLGVFLTCPVI 124
>pdb|3GA7|A Chain A, 1.55 Angstrom Crystal Structure Of An Acetyl Esterase From
Salmonella Typhimurium
Length = 326
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 7/51 (13%)
Query: 128 CTLVGVSYGGMVGFKMAEMYPDLVESLVATCSVMFTESVSNAAL--ERIGF 176
CT++G+ Y YP +E VA CS F++ +L E+IGF
Sbjct: 119 CTVIGIDYS----LSPQARYPQAIEETVAVCS-YFSQHADEYSLNVEKIGF 164
>pdb|3V1K|A Chain A, Crystal Structure Of The H265q Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400.
pdb|3V1K|B Chain B, Crystal Structure Of The H265q Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400.
pdb|3V1N|A Chain A, Crystal Structure Of The H265q Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, After Exposure
To Its Substrate Hopda
Length = 286
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 117 VKGLRK-LGVKRCTLVGVSYGGMVGFKMAEMYPDLVESLV 155
VKGL L + R LVG S GG A YPD + L+
Sbjct: 94 VKGLMDALDIDRAHLVGNSMGGATALNFALEYPDRIGKLI 133
>pdb|1QFM|A Chain A, Prolyl Oligopeptidase From Porcine Muscle
Length = 710
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Query: 98 GGSITDRSERTASFQAECMVKGLRKLGV---KRCTLVGVSYGGMVGFKMAEMYPDLVESL 154
GG + ++ FQ C + L K G KR T+ G S GG++ A PDL +
Sbjct: 517 GGILANKQNCFDDFQ--CAAEYLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCV 574
Query: 155 VATCSVM 161
+A VM
Sbjct: 575 IAQVGVM 581
>pdb|4DIU|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or94
Length = 248
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 48/114 (42%), Gaps = 13/114 (11%)
Query: 59 KHAVVFLHAFGFDGILTWQFQVLALAKTYAVYVPDFLFFGGSITDRSERTASFQAEC--- 115
+ AV+ LH F + +K Y + P ++ G + E F E
Sbjct: 15 ERAVLLLHGFTGNSADVRMLGRFLESKGYTCHAP--IYSGHGVP--PEALTRFGPEAWWQ 70
Query: 116 -MVKG---LRKLGVKRCTLVGVSYGGMVGFKMAEMYPDLVESLVATCSVMFTES 165
++ G L+ G ++ + G+S GG+ K+ P +E +V C+ M+ +S
Sbjct: 71 DVMNGYEFLKNKGYEKIAVAGLSLGGVFSLKLGYTVP--IEGIVTMCAPMYIKS 122
>pdb|3DDU|A Chain A, Prolyl Oligopeptidase With Gsk552
Length = 709
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Query: 98 GGSITDRSERTASFQAECMVKGLRKLGV---KRCTLVGVSYGGMVGFKMAEMYPDLVESL 154
GG + ++ FQ C + L K G KR T+ G S GG++ A PDL +
Sbjct: 516 GGILANKQNCFDDFQ--CAAEYLIKEGYTSPKRLTINGGSNGGLLVAACANQRPDLFGCV 573
Query: 155 VATCSVM 161
+A VM
Sbjct: 574 IAQVGVM 580
>pdb|3DKT|A Chain A, Crystal Structure Of Thermotoga Maritima Encapsulin
pdb|3DKT|B Chain B, Crystal Structure Of Thermotoga Maritima Encapsulin
pdb|3DKT|C Chain C, Crystal Structure Of Thermotoga Maritima Encapsulin
pdb|3DKT|D Chain D, Crystal Structure Of Thermotoga Maritima Encapsulin
pdb|3DKT|E Chain E, Crystal Structure Of Thermotoga Maritima Encapsulin
pdb|3DKT|F Chain F, Crystal Structure Of Thermotoga Maritima Encapsulin
pdb|3DKT|G Chain G, Crystal Structure Of Thermotoga Maritima Encapsulin
pdb|3DKT|H Chain H, Crystal Structure Of Thermotoga Maritima Encapsulin
pdb|3DKT|I Chain I, Crystal Structure Of Thermotoga Maritima Encapsulin
pdb|3DKT|J Chain J, Crystal Structure Of Thermotoga Maritima Encapsulin
Length = 265
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/89 (22%), Positives = 40/89 (44%), Gaps = 15/89 (16%)
Query: 100 SITDRSERTASFQAECMVKGLRKLGVKRCTLVGVSYGGMVGFKMAEMY-----PDLVESL 154
S+ + + A F+ E + +G K GVK G++ F+ ++ DL+E++
Sbjct: 103 SLEETVRKVAEFEDEVIFRGCEKSGVK----------GLLSFEERKIECGSTPKDLLEAI 152
Query: 155 VATCSVMFTESVSNAALERIGFDSWVDYL 183
V S+ + + I D W+++L
Sbjct: 153 VRALSIFSKDGIEGPYTLVINTDRWINFL 181
>pdb|1TQH|A Chain A, Covalent Reaction Intermediate Revealed In Crystal
Structure Of The Geobacillus Stearothermophilus
Carboxylesterase Est30
Length = 247
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/110 (20%), Positives = 45/110 (40%), Gaps = 5/110 (4%)
Query: 59 KHAVVFLHAFGFDGILTWQFQVLALAKTYAVYVPDFLFFGGSITDRSERTASFQAECMVK 118
+ AV+ LH F + +K Y + P + G + + ++
Sbjct: 16 ERAVLLLHGFTGNSADVRMLGRFLESKGYTCHAPIYKGHGVPPEELVHTGPDDWWQDVMN 75
Query: 119 G---LRKLGVKRCTLVGVSYGGMVGFKMAEMYPDLVESLVATCSVMFTES 165
G L+ G ++ + G+S GG+ K+ P +E +V C+ M+ +S
Sbjct: 76 GYEFLKNKGYEKIAVAGLSLGGVFSLKLGYTVP--IEGIVTMCAPMYIKS 123
>pdb|1XRM|A Chain A, Crystal Structure Of Active Site F1-Mutant E213q Soaked
With Peptide Ala-Phe
pdb|1XRN|A Chain A, Crystal Structure Of Active Site F1-Mutant E213q Soaked
With Peptide Phe-Ala
pdb|1XRO|A Chain A, Crystal Structure Of Active Site F1-Mutant E213q Soaked
With Peptide Phe-Leu
pdb|1XRP|A Chain A, Crystal Structure Of Active Site F1-mutant E213q Soaked
With Peptide Pro-leu-gly-gly
Length = 293
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 51/118 (43%), Gaps = 13/118 (11%)
Query: 103 DRSERTASFQAECMVKGLRK--LGVKRCTLVGVSYGGMVGFKMAEMYPDLVESLVATCSV 160
D+S+ T + E + LR G ++ L+G SYGG + A Y D ++ L+ +
Sbjct: 73 DQSKFTIDYGVE-EAEALRSKLFGNEKVFLMGSSYGGALALAYAVKYQDHLKGLIVSG-- 129
Query: 161 MFTESVSNAALERIGFDSWVDYLLPKTADALKVKLDIACYKLP----TLPAFVFKHIL 214
+S+ L + +D L K DA+K Y+ P + F +H+L
Sbjct: 130 ----GLSSVPLTVKEMNRLIDELPAKYRDAIKKYGSSGSYENPEYQEAVNYFYHQHLL 183
>pdb|1XRL|A Chain A, Crystal Structure Of Active Site F1-Mutant Y205f Complex
With Inhibitor Pck
Length = 293
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 51/118 (43%), Gaps = 13/118 (11%)
Query: 103 DRSERTASFQAECMVKGLRK--LGVKRCTLVGVSYGGMVGFKMAEMYPDLVESLVATCSV 160
D+S+ T + E + LR G ++ L+G SYGG + A Y D ++ L+ +
Sbjct: 73 DQSKFTIDYGVE-EAEALRSKLFGNEKVFLMGSSYGGALALAYAVKYQDHLKGLIVSG-- 129
Query: 161 MFTESVSNAALERIGFDSWVDYLLPKTADALKVKLDIACYKLP----TLPAFVFKHIL 214
+S+ L + +D L K DA+K Y+ P + F +H+L
Sbjct: 130 ----GLSSVPLTVKEMNRLIDELPAKYRDAIKKYGSSGSYENPEYQEAVNYFYHQHLL 183
>pdb|1XRQ|A Chain A, Crystal Structure Of Active Site F1-Mutant E245q Soaked
With Peptide Phe-Leu
pdb|1XRR|A Chain A, Crystal Structure Of Active Site F1-mutant E245q Soaked
With Peptide Pro-pro
Length = 293
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 51/118 (43%), Gaps = 13/118 (11%)
Query: 103 DRSERTASFQAECMVKGLRK--LGVKRCTLVGVSYGGMVGFKMAEMYPDLVESLVATCSV 160
D+S+ T + E + LR G ++ L+G SYGG + A Y D ++ L+ +
Sbjct: 73 DQSKFTIDYGVE-EAEALRSKLFGNEKVFLMGSSYGGALALAYAVKYQDHLKGLIVSG-- 129
Query: 161 MFTESVSNAALERIGFDSWVDYLLPKTADALKVKLDIACYKLP----TLPAFVFKHIL 214
+S+ L + +D L K DA+K Y+ P + F +H+L
Sbjct: 130 ----GLSSVPLTVKEMNRLIDELPAKYRDAIKKYGSSGSYENPEYQEAVNYFYHQHLL 183
>pdb|3NWO|A Chain A, Crystal Structure Of Proline Iminopeptidase Mycobacterium
Smegmatis
Length = 330
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 6/49 (12%)
Query: 111 FQAECMVKGLRKLGVKRCTLVGVSYGGMVGFKMAEMYPDLVESLVATCS 159
F A C LG++R ++G S+GGM+G ++A P + SL A C+
Sbjct: 116 FHAVCTA-----LGIERYHVLGQSWGGMLGAEIAVRQPSGLVSL-AICN 158
>pdb|3BWX|A Chain A, Crystal Structure Of An Alpha/beta Hydrolase (yp_496220.1)
From Novosphingobium Aromaticivorans Dsm 12444 At 1.50 A
Resolution
Length = 285
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 247 TQKIYLLWGENDKILDMQTARNCKEQVGENATLVSIEKAGHLPNVERP 294
T+ + +L GE IL QTA + G LV++ + GH P ++ P
Sbjct: 227 TRPLLVLRGETSDILSAQTAAKXASRPG--VELVTLPRIGHAPTLDEP 272
>pdb|1O6F|A Chain A, Prolyl Oligopeptidase From Porcine Brain, D641a Mutant
With Bound Peptide Ligand Suc-Gly-Pro
Length = 710
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Query: 98 GGSITDRSERTASFQAECMVKGLRKLGV---KRCTLVGVSYGGMVGFKMAEMYPDLVESL 154
GG + ++ FQ C + L K G KR T+ G S GG++ A PDL +
Sbjct: 517 GGILANKQNCFDDFQ--CAAEYLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCV 574
Query: 155 VATCSVM 161
+A VM
Sbjct: 575 IAQVGVM 581
>pdb|1H2X|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Y473f Mutant
pdb|1H2Y|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Y473f Mutant
With Covalently Bound Inhibitor Z-Pro-Prolinal
Length = 710
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Query: 98 GGSITDRSERTASFQAECMVKGLRKLGV---KRCTLVGVSYGGMVGFKMAEMYPDLVESL 154
GG + ++ FQ C + L K G KR T+ G S GG++ A PDL +
Sbjct: 517 GGILANKQNCFDDFQ--CAAEYLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCV 574
Query: 155 VATCSVM 161
+A VM
Sbjct: 575 IAQVGVM 581
>pdb|1MTZ|A Chain A, Crystal Structure Of The Tricorn Interacting Factor F1
pdb|1MU0|A Chain A, Crystal Structure Of The Tricorn Interacting Factor F1
Complex With Pck
Length = 293
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 51/118 (43%), Gaps = 13/118 (11%)
Query: 103 DRSERTASFQAECMVKGLRK--LGVKRCTLVGVSYGGMVGFKMAEMYPDLVESLVATCSV 160
D+S+ T + E + LR G ++ L+G SYGG + A Y D ++ L+ +
Sbjct: 73 DQSKFTIDYGVE-EAEALRSKLFGNEKVFLMGSSYGGALALAYAVKYQDHLKGLIVSG-- 129
Query: 161 MFTESVSNAALERIGFDSWVDYLLPKTADALKVKLDIACYKLP----TLPAFVFKHIL 214
+S+ L + +D L K DA+K Y+ P + F +H+L
Sbjct: 130 ----GLSSVPLTVKEMNRLIDELPAKYRDAIKKYGSSGSYENPEYQEAVNYFYHQHLL 183
>pdb|3V48|A Chain A, Crystal Structure Of The Putative AlphaBETA HYDROLASE RUTD
FROM E.Coli
pdb|3V48|B Chain B, Crystal Structure Of The Putative AlphaBETA HYDROLASE RUTD
FROM E.Coli
Length = 268
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 45/105 (42%), Gaps = 2/105 (1%)
Query: 53 PKKATEKHAVVFLHAFGFDGILTWQFQVLALAKTYAVYVPDFLFFGGSITDRSERTASFQ 112
P + VV + G G W Q+ L + Y V D G + +E + Q
Sbjct: 9 PPPYADAPVVVLISGLGGSGSY-WLPQLAVLEQEYQVVCYDQRGTGNNPDTLAEDYSIAQ 67
Query: 113 -AECMVKGLRKLGVKRCTLVGVSYGGMVGFKMAEMYPDLVESLVA 156
A + + L G++ +VG + G +VG ++A YP V L++
Sbjct: 68 XAAELHQALVAAGIEHYAVVGHALGALVGXQLALDYPASVTVLIS 112
>pdb|4AX4|A Chain A, Prolyl Oligopeptidase From Porcine Brain, H680a Mutant
Length = 710
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Query: 98 GGSITDRSERTASFQAECMVKGLRKLGV---KRCTLVGVSYGGMVGFKMAEMYPDLVESL 154
GG + ++ FQ C + L K G KR T+ G S GG++ A PDL +
Sbjct: 517 GGILANKQNCFDDFQ--CAAEYLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCV 574
Query: 155 VATCSVM 161
+A VM
Sbjct: 575 IAQVGVM 581
>pdb|1QFS|A Chain A, Prolyl Oligopeptidase From Porcine Muscle With Covalently
Bound Inhibitor Z-Pro-Prolinal
pdb|1H2W|A Chain A, Prolyl Oligopeptidase From Porcine Brain
pdb|3EQ7|A Chain A, Prolyl Oligopeptidase Complexed With
R-Pro-(Decarboxy-Pro)-Type Inhibitors
pdb|3EQ8|A Chain A, Prolyl Oligopeptidase Complexed With
R-Pro-(Decarboxy-Pro)-Type Inhibitors
pdb|3EQ9|A Chain A, Prolyl Oligopeptidase Complexed With
R-Pro-(Decarboxy-Pro)-Type Inhibitors
pdb|2XDW|A Chain A, Inhibition Of Prolyl Oligopeptidase With A Synthetic
Unnatural Dipeptide
pdb|4AMY|A Chain A, Prolyl Oligopeptidase From Porcine Brain With A Covalently
Bound Inhibitor Ic-1
pdb|4AMZ|A Chain A, Prolyl Oligopeptidase From Porcine Brain With A Covalently
Bound Inhibitor Ic-2
pdb|4AN0|A Chain A, Prolyl Oligopeptidase From Porcine Brain With A Covalently
Bound Inhibitor Ic-3
pdb|4AN1|A Chain A, Prolyl Oligopeptidase From Porcine Brain With A Covalently
Bound Inhibitor Ic-4
Length = 710
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Query: 98 GGSITDRSERTASFQAECMVKGLRKLGV---KRCTLVGVSYGGMVGFKMAEMYPDLVESL 154
GG + ++ FQ C + L K G KR T+ G S GG++ A PDL +
Sbjct: 517 GGILANKQNCFDDFQ--CAAEYLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCV 574
Query: 155 VATCSVM 161
+A VM
Sbjct: 575 IAQVGVM 581
>pdb|1O6G|A Chain A, Prolyl Oligopeptidase From Porcine Brain, D641n Mutant
With Bound Peptide Ligand Suc-Gly-Pro
Length = 710
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Query: 98 GGSITDRSERTASFQAECMVKGLRKLGV---KRCTLVGVSYGGMVGFKMAEMYPDLVESL 154
GG + ++ FQ C + L K G KR T+ G S GG++ A PDL +
Sbjct: 517 GGILANKQNCFDDFQ--CAAEYLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCV 574
Query: 155 VATCSVM 161
+A VM
Sbjct: 575 IAQVGVM 581
>pdb|1VZ3|A Chain A, Prolyl Oligopeptidase From Porcine Brain, T597c Mutant
Length = 710
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Query: 98 GGSITDRSERTASFQAECMVKGLRKLGV---KRCTLVGVSYGGMVGFKMAEMYPDLVESL 154
GG + ++ FQ C + L K G KR T+ G S GG++ A PDL +
Sbjct: 517 GGILANKQNCFDDFQ--CAAEYLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCV 574
Query: 155 VATCSVM 161
+A VM
Sbjct: 575 IAQVGVM 581
>pdb|1E5T|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Mutant
Length = 710
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Query: 98 GGSITDRSERTASFQAECMVKGLRKLGV---KRCTLVGVSYGGMVGFKMAEMYPDLVESL 154
GG + ++ FQ C + L K G KR T+ G S GG++ A PDL +
Sbjct: 517 GGILANKQNCFDDFQ--CAAEYLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCV 574
Query: 155 VATCSVM 161
+A VM
Sbjct: 575 IAQVGVM 581
>pdb|1VZ2|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Y73c/v427c/c255t
Mutant
Length = 710
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Query: 98 GGSITDRSERTASFQAECMVKGLRKLGV---KRCTLVGVSYGGMVGFKMAEMYPDLVESL 154
GG + ++ FQ C + L K G KR T+ G S GG++ A PDL +
Sbjct: 517 GGILANKQNCFDDFQ--CAAEYLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCV 574
Query: 155 VATCSVM 161
+A VM
Sbjct: 575 IAQVGVM 581
>pdb|1XQV|A Chain A, Crystal Structure Of Inactive F1-Mutant G37a
Length = 293
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 51/118 (43%), Gaps = 13/118 (11%)
Query: 103 DRSERTASFQAECMVKGLRK--LGVKRCTLVGVSYGGMVGFKMAEMYPDLVESLVATCSV 160
D+S+ T + E + LR G ++ L+G SYGG + A Y D ++ L+ +
Sbjct: 73 DQSKFTIDYGVE-EAEALRSKLFGNEKVFLMGSSYGGALALAYAVKYQDHLKGLIVSG-- 129
Query: 161 MFTESVSNAALERIGFDSWVDYLLPKTADALKVKLDIACYKLP----TLPAFVFKHIL 214
+S+ L + +D L K DA+K Y+ P + F +H+L
Sbjct: 130 ----GLSSVPLTVKEMNRLIDELPAKYRDAIKKYGSSGSYENPEYQEAVNYFYHQHLL 183
>pdb|2PU7|A Chain A, Crystal Structure Of S112aH265A DOUBLE MUTANT OF A C-C
Hydrolase, Bphd, From Burkholderia Xenovorans Lb400
pdb|2PUJ|A Chain A, Crystal Structure Of The S112aH265A DOUBLE MUTANT OF A C-C
Hydrolase, Bphd From Burkholderia Xenovorans Lb400, In
Complex With Its Substrate Hopda
Length = 286
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 117 VKGLRK-LGVKRCTLVGVSYGGMVGFKMAEMYPDLVESLV 155
VKGL L + R LVG + GG A YPD + L+
Sbjct: 94 VKGLMDALDIDRAHLVGNAMGGATALNFALEYPDRIGKLI 133
>pdb|3V1L|A Chain A, Crystal Structure Of The S112aH265Q MUTANT OF A C-C
Hydrolase, Bphd From Burkholderia Xenovorans Lb400
pdb|3V1M|A Chain A, Crystal Structure Of The S112aH265Q MUTANT OF A C-C
Hydrolase, Bphd From Burkholderia Xenovorans Lb400,
After Exposure To Its Substrate Hopda
Length = 286
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 117 VKGLRK-LGVKRCTLVGVSYGGMVGFKMAEMYPDLVESLV 155
VKGL L + R LVG + GG A YPD + L+
Sbjct: 94 VKGLMDALDIDRAHLVGNAMGGATALNFALEYPDRIGKLI 133
>pdb|3QYJ|A Chain A, Crystal Structure Of Alr0039, A Putative AlphaBETA
HYDROLASE FROM Nostoc Sp Pcc 7120.
pdb|3QYJ|B Chain B, Crystal Structure Of Alr0039, A Putative AlphaBETA
HYDROLASE FROM Nostoc Sp Pcc 7120
Length = 291
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 43/106 (40%), Gaps = 6/106 (5%)
Query: 55 KATEKHAVVFLHAFGFDGILTWQFQVLALAKTYAVYVPDFLFFG-----GSITDRSERTA 109
KA ++ LH + ++ W LA + V D +G S+ +
Sbjct: 21 KAGHGAPLLLLHGYPQTHVM-WHKIAPLLANNFTVVATDLRGYGDSSRPASVPHHINYSK 79
Query: 110 SFQAECMVKGLRKLGVKRCTLVGVSYGGMVGFKMAEMYPDLVESLV 155
A+ V+ + KLG ++ +VG G V ++A +P V+ L
Sbjct: 80 RVMAQDQVEVMSKLGYEQFYVVGHDRGARVAHRLALDHPHRVKKLA 125
>pdb|4F60|A Chain A, Crystal Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant (t148l, G171q, A172v, C176f)
Length = 299
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 38/180 (21%), Positives = 70/180 (38%), Gaps = 23/180 (12%)
Query: 53 PKKATEKHAVVFLHAFGFDGILTWQFQVLALAKTYAVYVPDFLFFGGSITDRSERTASFQ 112
P+ T V+FLH L W+ + +A ++ PD + G S +
Sbjct: 29 PRDGT---PVLFLHGNPTSSYL-WRNIIPHVAPSHRCIAPDLIGMGKSDKPDLDYFFDDH 84
Query: 113 AECMVKGLRKLGVKRCTLVGVSYGGMVGFKMAEMYPDLVESLVATCSVMFTESVSNAALE 172
+ + LG++ LV +G +GF A+ P+ V+ + + F +
Sbjct: 85 VRYLDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGI---ACMEFIRPIPT---- 137
Query: 173 RIGFDSWVDYLLP-----KTAD-ALKVKLDIACYKLPTLPAFVFKHILEWGQALFDHRKE 226
+D W ++ +TAD ++ +D + LP FV + + E DH +E
Sbjct: 138 ---WDEWPEFARELFQAFRTADVGRELIIDQNAFIEQVLPKFVVRPLTE---VEMDHYRE 191
>pdb|3NIP|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa
Guanidinopropionase Complexed With 1,6-Diaminohexane
pdb|3NIP|B Chain B, Crystal Structure Of Pseudomonas Aeruginosa
Guanidinopropionase Complexed With 1,6-Diaminohexane
pdb|3NIP|C Chain C, Crystal Structure Of Pseudomonas Aeruginosa
Guanidinopropionase Complexed With 1,6-Diaminohexane
pdb|3NIP|D Chain D, Crystal Structure Of Pseudomonas Aeruginosa
Guanidinopropionase Complexed With 1,6-Diaminohexane
pdb|3NIP|E Chain E, Crystal Structure Of Pseudomonas Aeruginosa
Guanidinopropionase Complexed With 1,6-Diaminohexane
pdb|3NIP|F Chain F, Crystal Structure Of Pseudomonas Aeruginosa
Guanidinopropionase Complexed With 1,6-Diaminohexane
pdb|3NIQ|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa
Guanidinopropionase
pdb|3NIQ|B Chain B, Crystal Structure Of Pseudomonas Aeruginosa
Guanidinopropionase
Length = 326
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 47/112 (41%), Gaps = 15/112 (13%)
Query: 68 FGFDGILTWQFQVLALAKTYAVYVPDFL---FFGGSITDRSERTASFQAECMVKGLRKLG 124
G + L +V+ TY + D L F G+ T S QA+ +V+GLR L
Sbjct: 217 LGVEATLAEARRVVGAGPTYVSFDVDVLDPAFAPGTGTPEIGGMTSLQAQQLVRGLRGLD 276
Query: 125 VKRCTLVGVS----YGGMVGFKMAEMYPDLVESLVATCSVMFTESVSNAALE 172
+ +V VS GG A M +L+ C + ES + +ALE
Sbjct: 277 LVGADVVEVSPPFDVGGATALVGATMMFELL------C--LLAESAARSALE 320
>pdb|2R11|A Chain A, Crystal Structure Of Putative Hydrolase (2632844) From
Bacillus Subtilis At 1.96 A Resolution
pdb|2R11|B Chain B, Crystal Structure Of Putative Hydrolase (2632844) From
Bacillus Subtilis At 1.96 A Resolution
pdb|2R11|C Chain C, Crystal Structure Of Putative Hydrolase (2632844) From
Bacillus Subtilis At 1.96 A Resolution
pdb|2R11|D Chain D, Crystal Structure Of Putative Hydrolase (2632844) From
Bacillus Subtilis At 1.96 A Resolution
Length = 306
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 54/250 (21%), Positives = 95/250 (38%), Gaps = 21/250 (8%)
Query: 62 VVFLHAFGFDGILTWQFQVLALAKTYAVYVPDFLFFGG-SITDRSERTASFQAECMVKGL 120
+V LH F W + + Y Y D + SI + T + A ++
Sbjct: 70 LVLLHGALFSST-XWYPNIADWSSKYRTYAVDIIGDKNKSIPENVSGTRTDYANWLLDVF 128
Query: 121 RKLGVKRCTLVGVSYGGMVGFKMAEMYPDLVESLVATCSVMFTESVSNAALERIGFD-SW 179
LG+++ +G+S GG+ P+ V+S ++ + A + F +
Sbjct: 129 DNLGIEKSHXIGLSLGGLHTXNFLLRXPERVKS----------AAILSPAETFLPFHHDF 178
Query: 180 VDYLLPKTA-DALKVKLDIACYKLPTL-PAFV--FKHILEWGQALFDHRKERKELVETLV 235
Y L TA + ++ L+ L P FV FK + W + V
Sbjct: 179 YKYALGLTASNGVETFLNWXXNDQNVLHPIFVKQFKAGVXWQDGSRNPNPNADGF--PYV 236
Query: 236 ISDKDFSVPRFTQKIYLLWGENDKILDMQTARNCKEQVGENATLVSIEKAGHLPNVERPF 295
+D++ R I LL GE++ I D +A + + I+ AGH+ + E+P
Sbjct: 237 FTDEELRSARV--PILLLLGEHEVIYDPHSALHRASSFVPDIEAEVIKNAGHVLSXEQPT 294
Query: 296 VYNRKLKRIL 305
N ++ R
Sbjct: 295 YVNERVXRFF 304
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,761,112
Number of Sequences: 62578
Number of extensions: 347525
Number of successful extensions: 962
Number of sequences better than 100.0: 92
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 61
Number of HSP's that attempted gapping in prelim test: 911
Number of HSP's gapped (non-prelim): 106
length of query: 317
length of database: 14,973,337
effective HSP length: 99
effective length of query: 218
effective length of database: 8,778,115
effective search space: 1913629070
effective search space used: 1913629070
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.3 bits)