BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021071
(317 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1H88|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex1
pdb|1H89|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex2
Length = 159
Score = 141 bits (356), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 62/102 (60%), Positives = 82/102 (80%)
Query: 11 IKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPE 70
IKGPW+ EED+ + +LVQK+GP+ WS+I+K + GR GK CR RW N L+P+V+ ++T E
Sbjct: 57 IKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEE 116
Query: 71 EDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 112
ED +I +AH R GN+WA IA+LL GRTDNAIKNHWNST++RK
Sbjct: 117 EDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 158
>pdb|1MSE|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition Helices
pdb|1MSF|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition Helices
Length = 105
Score = 139 bits (351), Expect = 1e-33, Method: Composition-based stats.
Identities = 62/102 (60%), Positives = 82/102 (80%)
Query: 11 IKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPE 70
IKGPW+ EED+ + +LVQK+GP+ WS+I+K + GR GK CR RW N L+P+V+ ++T E
Sbjct: 3 IKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEE 62
Query: 71 EDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 112
ED +I +AH R GN+WA IA+LL GRTDNAIKNHWNST++RK
Sbjct: 63 EDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 104
>pdb|1GV2|A Chain A, Crystal Structure Of C-Myb R2r3
Length = 105
Score = 139 bits (351), Expect = 2e-33, Method: Composition-based stats.
Identities = 62/102 (60%), Positives = 82/102 (80%)
Query: 11 IKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPE 70
IKGPW+ EED+ + +LVQK+GP+ WS+I+K + GR GK CR RW N L+P+V+ ++T E
Sbjct: 3 IKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEE 62
Query: 71 EDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 112
ED +I +AH R GN+WA IA+LL GRTDNAIKNHWNST++RK
Sbjct: 63 EDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 104
>pdb|1A5J|A Chain A, Chicken B-Myb Dna Binding Domain, Repeat 2 And Repeat3,
Nmr, 32 Structures
Length = 110
Score = 137 bits (345), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 59/107 (55%), Positives = 81/107 (75%)
Query: 9 DRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFT 68
D +KGPW+ EED+ + +LV+K+G + W+LI+K + GR GK CR RW N L+P+V+ ++T
Sbjct: 4 DLVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHNHLNPEVKKSSWT 63
Query: 69 PEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCSS 115
EED +I AH GN+WA IA+LL GRTDNA+KNHWNST+KRK +
Sbjct: 64 EEEDRIIFEAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRKVDT 110
>pdb|1H8A|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex3
Length = 128
Score = 135 bits (339), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 59/101 (58%), Positives = 79/101 (78%)
Query: 12 KGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEE 71
KGPW+ EED+ + + VQK+GP+ WS I+K + GR GK CR RW N L+P+V+ ++T EE
Sbjct: 27 KGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEE 86
Query: 72 DEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 112
D +I +AH R GN+WA IA+LL GRTDNA+KNHWNST++RK
Sbjct: 87 DRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRK 127
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 12 KGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQV 62
K W+ EED + Q ++ G R W+ I+K +PGR+ + + W + + +V
Sbjct: 79 KTSWTEEEDRIIYQAHKRLGNR-WAEIAKLLPGRTDNAVKNHWNSTMRRKV 128
>pdb|3ZQC|A Chain A, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|D Chain D, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|G Chain G, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|J Chain J, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
Length = 131
Score = 119 bits (297), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 53/114 (46%), Positives = 78/114 (68%)
Query: 11 IKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPE 70
+KGP++ ED+ +++ V+++GP+NW I+ +P RS K CR RW N L P V A+TPE
Sbjct: 1 MKGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPE 60
Query: 71 EDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCSSMLTENGIFL 124
EDE I R + + G+KW+ IA+L+ GRTDNAIKN WNS++ ++ S+ I L
Sbjct: 61 EDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKRISTNSNHKEILL 114
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 3 FNRREVDRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQV 62
FN + +K W+PEEDE + + K G + WS+I+K IPGR+ + + RW + +S ++
Sbjct: 45 FNHLDPAVVKHAWTPEEDETIFRNYLKLGSK-WSVIAKLIPGRTDNAIKNRWNSSISKRI 103
>pdb|3OSF|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-2f-13 Dna
pdb|3OSF|D Chain D, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-2f-13 Dna
pdb|3OSG|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-1-12 Dna
pdb|3OSG|D Chain D, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-1-12 Dna
Length = 126
Score = 90.9 bits (224), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 39/94 (41%), Positives = 60/94 (63%), Gaps = 1/94 (1%)
Query: 12 KGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEE 71
K ++PEEDE L++ V +HG +W +I+ + P R+ + CR RW N L+P + H +T EE
Sbjct: 11 KQKFTPEEDEMLKRAVAQHGS-DWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEE 69
Query: 72 DEMIIRAHARFGNKWATIARLLNGRTDNAIKNHW 105
D ++++ +G +WA IA+ GRTD IKN W
Sbjct: 70 DALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRW 103
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 24/43 (55%)
Query: 67 FTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTL 109
FTPEEDEM+ RA A+ G+ W IA R ++ W + L
Sbjct: 14 FTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYL 56
>pdb|2K9N|A Chain A, Solution Nmr Structure Of The R2r3 Dna Binding Domain Of
Myb1 Protein From Protozoan Parasite Trichomonas
Vaginalis
pdb|2KDZ|A Chain A, Structure Of The R2r3 Dna Binding Domain Of Myb1 Protein
From Protozoan Parasite Trichomonas Vaginalis In Complex
With Mre-1MRE-2r Dna
Length = 107
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 58/90 (64%)
Query: 16 SPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMI 75
+ EED LQQLV ++G ++W IS+ + R+ + CR RW N ++P + ++PEED ++
Sbjct: 5 TEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEEDMLL 64
Query: 76 IRAHARFGNKWATIARLLNGRTDNAIKNHW 105
+ +A +G KW I++ L R+DN I+N W
Sbjct: 65 DQKYAEYGPKWNKISKFLKNRSDNNIRNRW 94
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 13 GPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRW 54
PWSPEED L Q ++GP+ W+ ISK + RS + R RW
Sbjct: 54 DPWSPEEDMLLDQKYAEYGPK-WNKISKFLKNRSDNNIRNRW 94
>pdb|1MBJ|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3
pdb|1MBK|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3
Length = 53
Score = 73.6 bits (179), Expect = 2e-13, Method: Composition-based stats.
Identities = 33/51 (64%), Positives = 42/51 (82%)
Query: 62 VEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 112
V+ ++T EED +I +AH R GN+WA IA+LL GRTDNAIKNHWNST++RK
Sbjct: 1 VKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 51
Score = 32.0 bits (71), Expect = 0.41, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 12 KGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQV 62
K W+ EED + Q ++ G R W+ I+K +PGR+ + + W + + +V
Sbjct: 3 KTSWTEEEDRIIYQAHKRLGNR-WAEIAKLLPGRTDNAIKNHWNSTMRRKV 52
>pdb|1IDY|A Chain A, Structure Of Myb Transforming Protein, Nmr, Minimized
Average Structure
pdb|1IDZ|A Chain A, Structure Of Myb Transforming Protein, Nmr, 20 Structures
Length = 54
Score = 73.2 bits (178), Expect = 2e-13, Method: Composition-based stats.
Identities = 32/52 (61%), Positives = 43/52 (82%)
Query: 61 QVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 112
+V+ ++T EED ++ +AH R GN+WA IA+LL GRTDNAIKNHWNST++RK
Sbjct: 2 EVKKTSWTEEEDRILYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 53
Score = 33.1 bits (74), Expect = 0.21, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 12 KGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQV 62
K W+ EED L Q ++ G R W+ I+K +PGR+ + + W + + +V
Sbjct: 5 KTSWTEEEDRILYQAHKRLGNR-WAEIAKLLPGRTDNAIKNHWNSTMRRKV 54
>pdb|1GVD|A Chain A, Crystal Structure Of C-Myb R2 V103l Mutant
Length = 52
Score = 72.4 bits (176), Expect = 3e-13, Method: Composition-based stats.
Identities = 30/51 (58%), Positives = 40/51 (78%)
Query: 11 IKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQ 61
IKGPW+ EED+ L +LVQK+GP+ WS+I+K + GR GK CR RW N L+P+
Sbjct: 2 IKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE 52
Score = 32.0 bits (71), Expect = 0.50, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 67 FTPEEDEMIIRAHARFGNK-WATIARLLNGRTDNAIKNHWNSTL 109
+T EED+ +I+ ++G K W+ IA+ L GR + W++ L
Sbjct: 6 WTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 49
>pdb|1MBG|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2
pdb|1MBH|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2
Length = 53
Score = 71.2 bits (173), Expect = 7e-13, Method: Composition-based stats.
Identities = 29/51 (56%), Positives = 40/51 (78%)
Query: 11 IKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQ 61
IKGPW+ EED+ + +LVQK+GP+ WS+I+K + GR GK CR RW N L+P+
Sbjct: 2 IKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE 52
Score = 31.2 bits (69), Expect = 0.72, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 67 FTPEEDEMIIRAHARFGNK-WATIARLLNGRTDNAIKNHWNSTL 109
+T EED+ +I ++G K W+ IA+ L GR + W++ L
Sbjct: 6 WTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 49
>pdb|1GV5|A Chain A, Crystal Structure Of C-Myb R2
Length = 52
Score = 70.9 bits (172), Expect = 8e-13, Method: Composition-based stats.
Identities = 29/51 (56%), Positives = 40/51 (78%)
Query: 11 IKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQ 61
IKGPW+ EED+ + +LVQK+GP+ WS+I+K + GR GK CR RW N L+P+
Sbjct: 2 IKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE 52
Score = 32.3 bits (72), Expect = 0.40, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 67 FTPEEDEMIIRAHARFGNK-WATIARLLNGRTDNAIKNHWNSTL 109
+T EED+ +I+ ++G K W+ IA+ L GR + W++ L
Sbjct: 6 WTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 49
>pdb|1MBE|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1
pdb|1MBF|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1
Length = 53
Score = 47.0 bits (110), Expect = 1e-05, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 33/50 (66%)
Query: 12 KGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQ 61
K W+ EEDE L++LV+++G +W +I+ +P R+ C+ RW L+P+
Sbjct: 3 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPE 52
>pdb|1GUU|A Chain A, Crystal Structure Of C-Myb R1
Length = 52
Score = 47.0 bits (110), Expect = 1e-05, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 33/50 (66%)
Query: 12 KGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQ 61
K W+ EEDE L++LV+++G +W +I+ +P R+ C+ RW L+P+
Sbjct: 3 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPE 52
>pdb|2D9A|A Chain A, Solution Structure Of Rsgi Ruh-050, A Myb Dna-Binding
Domain In Mouse Cdna
Length = 60
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 28/45 (62%)
Query: 15 WSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLS 59
W+ EEDE L+ LV++ G ++W ++ P R+ + C+ RW LS
Sbjct: 11 WTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLS 55
>pdb|2DIM|A Chain A, Solution Structure Of The Myb_dna-Binding Domain Of
Human Cell Division Cycle 5-Like Protein
Length = 70
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%)
Query: 15 WSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFT 68
W EDE L+ V K+G WS I+ + +S K C+ RW L P ++ ++
Sbjct: 12 WRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWS 65
>pdb|2M2E|A Chain A, Solution Nmr Structure Of The Sant Domain Of Human
Dnajc2, Northeast Structural Genomics Consortium Target
Hr8254a
Length = 73
Score = 36.2 bits (82), Expect = 0.023, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Query: 14 PWSPEEDEALQQLVQKH---GPRNWSLISKSIPGRSGKSCRLRW 54
PW+ EE + L+Q ++ + P W I++++PGR+ K C R+
Sbjct: 5 PWTTEEQKLLEQALKTYPVNTPERWKKIAEAVPGRTKKDCMKRY 48
>pdb|1VF9|A Chain A, Solution Structure Of Human Trf2
Length = 64
Score = 35.4 bits (80), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 12 KGPWSPEEDEALQQLVQKHGPRNWSLISKSIP--GRSGKSCRLRW 54
K W+ EE E ++ VQK+G NW+ ISK+ P R+ + RW
Sbjct: 11 KQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRW 55
>pdb|1VFC|A Chain A, Solution Structure Of The Dna Complex Of Human Trf2
Length = 63
Score = 35.0 bits (79), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 12 KGPWSPEEDEALQQLVQKHGPRNWSLISKSIP--GRSGKSCRLRW 54
K W+ EE E ++ VQK+G NW+ ISK+ P R+ + RW
Sbjct: 10 KQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRW 54
>pdb|1XG1|A Chain A, Solution Structure Of Myb-Domain Of Human Trf2
Length = 67
Score = 35.0 bits (79), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 12 KGPWSPEEDEALQQLVQKHGPRNWSLISKSIP--GRSGKSCRLRW 54
K W+ EE E ++ VQK+G NW+ ISK+ P R+ + RW
Sbjct: 14 KQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRW 58
>pdb|3SJM|A Chain A, Crystal Structure Analysis Of Trf2-Dbd-Dna Complex
pdb|3SJM|B Chain B, Crystal Structure Analysis Of Trf2-Dbd-Dna Complex
Length = 64
Score = 35.0 bits (79), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 12 KGPWSPEEDEALQQLVQKHGPRNWSLISKSIP--GRSGKSCRLRW 54
K W+ EE E ++ VQK+G NW+ ISK+ P R+ + RW
Sbjct: 11 KQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRW 55
>pdb|1W0U|A Chain A, Htrf2 Dna-Binding Domain In Complex With Telomeric Dna.
pdb|1W0U|B Chain B, Htrf2 Dna-Binding Domain In Complex With Telomeric Dna
Length = 55
Score = 34.3 bits (77), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 12 KGPWSPEEDEALQQLVQKHGPRNWSLISKSIP--GRSGKSCRLRW 54
K W+ EE E ++ VQK+G NW+ ISK+ P R+ + RW
Sbjct: 2 KQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRW 46
>pdb|2CU7|A Chain A, Solution Structure Of The Sant Domain Of Human Kiaa1915
Protein
Length = 72
Score = 33.1 bits (74), Expect = 0.22, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 26/46 (56%)
Query: 67 FTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 112
+T EE E+ + A+FG +W I++L+ RT +K++ K K
Sbjct: 12 WTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNK 57
>pdb|2LLK|A Chain A, Solution Nmr Structure Of The N-Terminal Myb-Like 1
Domain Of The Human Cyclin-D-Binding Transcription
Factor 1 (Hdmp1), Northeast Structural Genomics
Consortium (Nesg) Target Id Hr8011a
Length = 73
Score = 31.2 bits (69), Expect = 0.89, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 6/44 (13%)
Query: 13 GPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKS----CRL 52
G ++PEE E L++L KHG +W+ I ++ GRS S CRL
Sbjct: 24 GKYTPEEIEKLKELRIKHG-NDWATIGAAL-GRSASSVKDRCRL 65
Score = 30.8 bits (68), Expect = 0.92, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 67 FTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKN 103
+TPEE E + + GN WATI L GR+ +++K+
Sbjct: 26 YTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKD 61
>pdb|2CJJ|A Chain A, Crystal Structure Of The Myb Domain Of The Rad
Transcription Factor From Antirrhinum Majus
Length = 93
Score = 28.9 bits (63), Expect = 3.5, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
Query: 65 RAFTPEEDEMIIRAHARFG----NKWATIARLLNGRTDNAIKNHW 105
R ++ +E++ RA A + ++WA +AR + GRT +K H+
Sbjct: 9 RPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHY 53
>pdb|1DT3|A Chain A, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT3|B Chain B, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|A Chain A, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|B Chain B, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|C Chain C, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|D Chain D, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|E Chain E, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|F Chain F, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|G Chain G, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|H Chain H, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DTE|A Chain A, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DTE|B Chain B, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DU4|A Chain A, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase Other Structure
Details
pdb|1DU4|B Chain B, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase Other Structure
Details
pdb|1DU4|C Chain C, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase Other Structure
Details
pdb|1DU4|D Chain D, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase Other Structure
Details
pdb|1EIN|A Chain A, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1EIN|B Chain B, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1EIN|C Chain C, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1TIB|A Chain A, Conformational Lability Of Lipases Observed In The Absence
Of An Oil-Water Interface: Crystallographic Studies Of
Enzymes From The Fungi Humicola Lanuginosa And Rhizopus
Delemar
pdb|4DYH|A Chain A, Crystal Structure Of Glycosylated Lipase From Humicola
Lanuginosa At 2 Angstrom Resolution
pdb|4DYH|B Chain B, Crystal Structure Of Glycosylated Lipase From Humicola
Lanuginosa At 2 Angstrom Resolution
pdb|4EA6|A Chain A, Crystal Structure Of Fungal Lipase From
Thermomyces(Humicola) Lanuginosa At 2.30 Angstrom
Resolution.
pdb|4EA6|B Chain B, Crystal Structure Of Fungal Lipase From
Thermomyces(Humicola) Lanuginosa At 2.30 Angstrom
Resolution.
pdb|4FLF|A Chain A, Structure Of Three Phase Partition Treated Lipase From
Thermomyces Lanuginosa At 2.15a Resolution.
pdb|4FLF|B Chain B, Structure Of Three Phase Partition Treated Lipase From
Thermomyces Lanuginosa At 2.15a Resolution.
pdb|4GBG|A Chain A, Crystal Structure Of Ethyl Acetoacetate Treated Lipase
From Thermomyces Lanuginosa At 2.9 A Resolution
pdb|4GBG|B Chain B, Crystal Structure Of Ethyl Acetoacetate Treated Lipase
From Thermomyces Lanuginosa At 2.9 A Resolution
pdb|4GI1|A Chain A, Structure Of The Complex Of Three Phase Partition Treated
Lipase From Thermomyces Lanuginosa With
16-Hydroxypalmitic Acid At 2.4 A Resolution
pdb|4GI1|B Chain B, Structure Of The Complex Of Three Phase Partition Treated
Lipase From Thermomyces Lanuginosa With
16-Hydroxypalmitic Acid At 2.4 A Resolution
pdb|4GLB|A Chain A, Structure Of P-Nitrobenzaldehyde Inhibited Lipase From
Thermomyces Lanuginosa At 2.69 A Resolution
pdb|4GLB|B Chain B, Structure Of P-Nitrobenzaldehyde Inhibited Lipase From
Thermomyces Lanuginosa At 2.69 A Resolution
pdb|4GWL|A Chain A, Structure Of Three Phase Partition Treated Lipase From
Thermomyces Lanuginosa At 2.55a Resolution
pdb|4GWL|B Chain B, Structure Of Three Phase Partition Treated Lipase From
Thermomyces Lanuginosa At 2.55a Resolution
pdb|4GHW|A Chain A, Crystal Structure Of The Complex Of Fungal Lipase From
Thermomyces Lanuginosa With Decanoic Acid At 2.6 A
Resolution
pdb|4GHW|B Chain B, Crystal Structure Of The Complex Of Fungal Lipase From
Thermomyces Lanuginosa With Decanoic Acid At 2.6 A
Resolution
Length = 269
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Query: 77 RAHARFGNKWATIARLLNGRTDNAIKNHWNS----TLKRKCSSMLTENGIFLNCNGYDAD 132
R H F + W ++A L + ++A++ H + T ++ T G L NGYD D
Sbjct: 108 RGHDGFTSSWRSVADTLRQKVEDAVREHPDYRVVFTGHSLGGALATVAGADLRGNGYDID 167
>pdb|1GT6|A Chain A, S146a Mutant Of Thermomyces (Humicola) Lanuginosa Lipase
Complex With Oleic Acid
pdb|1GT6|B Chain B, S146a Mutant Of Thermomyces (Humicola) Lanuginosa Lipase
Complex With Oleic Acid
Length = 269
Score = 27.7 bits (60), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Query: 77 RAHARFGNKWATIARLLNGRTDNAIKNHWNS----TLKRKCSSMLTENGIFLNCNGYDAD 132
R H F + W ++A L + ++A++ H + T ++ T G L NGYD D
Sbjct: 108 RGHDGFTSSWRSVADTLRQKVEDAVREHPDYRVVFTGHALGGALATVAGADLRGNGYDID 167
>pdb|3BGK|A Chain A, The Crystal Structure Of Hypothetic Protein Smu.573 From
Streptococcus Mutans
Length = 311
Score = 27.7 bits (60), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 4 NRREVDRIKGPWSPEEDEALQQLVQKHGPRNWSLISKS 41
+++E +R+ G PE+ EA Q H P+ L++KS
Sbjct: 186 HQKEWERLSGLTIPEQIEAATQTALAHFPKETILVAKS 223
>pdb|1BA5|A Chain A, Dna-Binding Domain Of Human Telomeric Protein, Htrf1,
Nmr, 18 Structures
Length = 53
Score = 27.7 bits (60), Expect = 9.5, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 10 RIKGPWSPEEDEALQQLVQKHGPRNWS--LISKSIPGRSGKSCRLRW 54
R + W EED+ L+ V+K+G NWS L+ R+ + RW
Sbjct: 1 RKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRW 47
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.129 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,953,897
Number of Sequences: 62578
Number of extensions: 286670
Number of successful extensions: 635
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 573
Number of HSP's gapped (non-prelim): 52
length of query: 317
length of database: 14,973,337
effective HSP length: 99
effective length of query: 218
effective length of database: 8,778,115
effective search space: 1913629070
effective search space used: 1913629070
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)