Query 021071
Match_columns 317
No_of_seqs 246 out of 1248
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 12:19:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021071.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021071hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gv2_A C-MYB, MYB proto-oncoge 100.0 1.9E-34 6.5E-39 233.7 10.2 105 9-113 1-105 (105)
2 1h8a_C AMV V-MYB, MYB transfor 100.0 4.5E-34 1.5E-38 239.5 9.5 112 2-113 17-128 (128)
3 2k9n_A MYB24; R2R3 domain, DNA 100.0 7E-34 2.4E-38 231.9 9.9 104 12-115 1-104 (107)
4 3zqc_A MYB3; transcription-DNA 100.0 6.8E-34 2.3E-38 239.6 9.8 107 11-117 1-107 (131)
5 3osg_A MYB21; transcription-DN 100.0 6.3E-33 2.2E-37 232.5 10.5 106 6-112 5-110 (126)
6 1h89_C C-MYB, MYB proto-oncoge 100.0 5.7E-32 2E-36 234.2 8.9 112 2-113 48-159 (159)
7 1h89_C C-MYB, MYB proto-oncoge 100.0 1.5E-29 5.2E-34 219.0 5.3 106 9-114 3-109 (159)
8 2dim_A Cell division cycle 5-l 99.8 8.6E-22 2.9E-26 149.1 4.1 66 7-72 4-69 (70)
9 1h8a_C AMV V-MYB, MYB transfor 99.8 1.4E-20 4.9E-25 157.3 5.6 77 38-114 1-78 (128)
10 1ign_A Protein (RAP1); RAP1,ye 99.8 5.6E-19 1.9E-23 162.0 6.9 105 8-112 4-200 (246)
11 2juh_A Telomere binding protei 99.7 7.3E-19 2.5E-23 146.8 3.4 83 6-88 11-103 (121)
12 2llk_A Cyclin-D-binding MYB-li 99.7 3.3E-18 1.1E-22 131.2 4.5 62 49-112 8-69 (73)
13 2roh_A RTBP1, telomere binding 99.7 6.7E-18 2.3E-22 141.2 5.4 80 6-85 25-114 (122)
14 2d9a_A B-MYB, MYB-related prot 99.7 1E-17 3.4E-22 122.9 4.8 57 7-63 3-59 (60)
15 1gvd_A MYB proto-oncogene prot 99.7 1.2E-17 4.1E-22 119.2 4.2 52 10-61 1-52 (52)
16 1ity_A TRF1; helix-turn-helix, 99.7 1.4E-17 4.8E-22 125.6 3.9 65 4-68 2-68 (69)
17 2din_A Cell division cycle 5-l 99.7 1E-16 3.5E-21 119.7 6.8 60 56-116 1-60 (66)
18 1guu_A C-MYB, MYB proto-oncoge 99.7 2.5E-17 8.7E-22 117.4 3.0 52 10-61 1-52 (52)
19 2cu7_A KIAA1915 protein; nucle 99.7 1.5E-16 5E-21 121.0 6.8 58 58-115 3-60 (72)
20 3sjm_A Telomeric repeat-bindin 99.6 1.2E-16 4.1E-21 119.4 2.6 55 9-63 8-64 (64)
21 2d9a_A B-MYB, MYB-related prot 99.6 3.9E-16 1.3E-20 114.4 5.4 56 59-114 3-59 (60)
22 1x41_A Transcriptional adaptor 99.6 4.1E-16 1.4E-20 114.7 3.5 54 8-61 4-57 (60)
23 1guu_A C-MYB, MYB proto-oncoge 99.6 1.7E-15 5.8E-20 107.9 5.8 50 62-111 1-51 (52)
24 1w0t_A Telomeric repeat bindin 99.6 6.8E-16 2.3E-20 110.6 3.0 49 11-59 1-51 (53)
25 1w0t_A Telomeric repeat bindin 99.6 2.4E-15 8.4E-20 107.7 5.9 50 63-112 1-53 (53)
26 1ity_A TRF1; helix-turn-helix, 99.6 3.9E-15 1.3E-19 112.1 7.0 60 57-116 3-65 (69)
27 1x41_A Transcriptional adaptor 99.6 3.8E-15 1.3E-19 109.4 6.0 53 59-111 3-56 (60)
28 2din_A Cell division cycle 5-l 99.6 3.7E-16 1.3E-20 116.7 0.5 60 5-66 2-61 (66)
29 1gvd_A MYB proto-oncogene prot 99.6 3.6E-15 1.2E-19 106.3 5.3 49 62-110 1-50 (52)
30 2dim_A Cell division cycle 5-l 99.5 4.1E-15 1.4E-19 112.3 5.5 57 59-115 4-61 (70)
31 2elk_A SPCC24B10.08C protein; 99.5 2.2E-15 7.5E-20 110.2 3.3 51 8-58 5-56 (58)
32 2yum_A ZZZ3 protein, zinc fing 99.5 1.4E-15 4.8E-20 116.2 1.5 60 7-66 3-67 (75)
33 2yum_A ZZZ3 protein, zinc fing 99.5 9E-15 3.1E-19 111.7 5.6 57 59-115 3-65 (75)
34 3sjm_A Telomeric repeat-bindin 99.5 1.9E-14 6.5E-19 107.4 6.1 52 62-113 9-63 (64)
35 2cu7_A KIAA1915 protein; nucle 99.5 3.8E-15 1.3E-19 113.2 1.2 58 6-64 3-60 (72)
36 2llk_A Cyclin-D-binding MYB-li 99.5 1.3E-14 4.4E-19 111.2 3.8 57 2-61 13-69 (73)
37 2ltp_A Nuclear receptor corepr 99.2 2.8E-15 9.6E-20 118.7 0.0 57 57-113 9-65 (89)
38 2elk_A SPCC24B10.08C protein; 99.5 4.6E-14 1.6E-18 103.1 6.3 49 61-109 6-56 (58)
39 2aje_A Telomere repeat-binding 99.5 2.6E-14 8.8E-19 116.6 4.3 79 6-84 7-95 (105)
40 3zqc_A MYB3; transcription-DNA 99.5 1.9E-14 6.4E-19 120.8 3.2 87 2-93 44-130 (131)
41 2ckx_A NGTRF1, telomere bindin 99.5 5.7E-14 1.9E-18 110.1 5.6 69 13-81 1-79 (83)
42 2cqr_A RSGI RUH-043, DNAJ homo 99.4 3.3E-13 1.1E-17 103.4 5.5 52 60-111 14-69 (73)
43 2yus_A SWI/SNF-related matrix- 99.4 3E-13 1E-17 105.0 4.3 52 6-58 12-63 (79)
44 2yus_A SWI/SNF-related matrix- 99.3 6.6E-13 2.3E-17 103.0 4.6 48 61-108 15-62 (79)
45 1gv2_A C-MYB, MYB proto-oncoge 99.3 5E-13 1.7E-17 107.6 3.4 58 2-60 46-103 (105)
46 3osg_A MYB21; transcription-DN 99.3 2.5E-12 8.6E-17 107.2 6.4 57 59-115 6-62 (126)
47 2ltp_A Nuclear receptor corepr 99.0 2.3E-13 7.7E-18 107.7 0.0 54 6-60 10-63 (89)
48 1x58_A Hypothetical protein 49 99.3 3E-12 1E-16 94.9 5.7 50 63-112 7-59 (62)
49 2k9n_A MYB24; R2R3 domain, DNA 99.3 3.4E-13 1.2E-17 109.4 0.6 59 2-61 43-101 (107)
50 2cqr_A RSGI RUH-043, DNAJ homo 99.3 5.7E-13 1.9E-17 102.0 1.5 54 6-59 12-68 (73)
51 2ckx_A NGTRF1, telomere bindin 99.3 3.9E-12 1.3E-16 99.7 5.9 50 65-114 1-55 (83)
52 1ign_A Protein (RAP1); RAP1,ye 99.2 3.1E-12 1.1E-16 117.4 4.8 55 60-114 4-64 (246)
53 2aje_A Telomere repeat-binding 99.2 9.2E-12 3.1E-16 101.5 6.3 55 60-114 9-68 (105)
54 2juh_A Telomere binding protei 99.2 8.2E-12 2.8E-16 104.2 5.3 55 58-112 11-70 (121)
55 2cjj_A Radialis; plant develop 99.2 1.6E-11 5.4E-16 98.1 5.8 50 63-112 7-60 (93)
56 2roh_A RTBP1, telomere binding 99.2 3.3E-11 1.1E-15 100.7 6.4 54 60-113 27-85 (122)
57 2cjj_A Radialis; plant develop 99.1 3.3E-11 1.1E-15 96.2 1.9 48 11-58 7-57 (93)
58 2eqr_A N-COR1, N-COR, nuclear 99.0 5.1E-10 1.8E-14 82.4 6.2 48 63-110 11-58 (61)
59 1x58_A Hypothetical protein 49 98.9 5.7E-10 1.9E-14 82.7 2.7 50 9-59 5-57 (62)
60 3hm5_A DNA methyltransferase 1 98.9 1.7E-09 5.8E-14 86.3 5.2 64 48-115 18-86 (93)
61 2cqq_A RSGI RUH-037, DNAJ homo 98.9 2.7E-09 9.3E-14 81.3 5.6 51 61-112 5-59 (72)
62 2eqr_A N-COR1, N-COR, nuclear 98.8 1.4E-09 4.8E-14 80.0 3.7 49 9-58 9-57 (61)
63 2iw5_B Protein corest, REST co 98.8 4.2E-09 1.4E-13 96.0 6.1 49 63-111 132-180 (235)
64 2xag_B REST corepressor 1; ami 98.8 4.3E-09 1.5E-13 105.3 4.9 46 65-110 381-426 (482)
65 2cqq_A RSGI RUH-037, DNAJ homo 98.6 1.5E-08 5E-13 77.3 2.2 49 9-58 5-56 (72)
66 1wgx_A KIAA1903 protein; MYB D 98.6 6E-08 2.1E-12 74.1 4.8 50 63-112 7-60 (73)
67 1fex_A TRF2-interacting telome 98.5 8.4E-08 2.9E-12 70.3 4.3 47 64-110 2-58 (59)
68 1fex_A TRF2-interacting telome 98.5 3.5E-08 1.2E-12 72.4 2.1 48 12-59 2-58 (59)
69 2iw5_B Protein corest, REST co 98.4 6.9E-08 2.4E-12 88.0 3.2 50 9-59 130-179 (235)
70 1wgx_A KIAA1903 protein; MYB D 98.4 1.9E-07 6.5E-12 71.3 3.3 48 13-60 9-59 (73)
71 1ofc_X ISWI protein; nuclear p 98.2 4.2E-06 1.4E-10 79.5 9.7 100 13-112 111-276 (304)
72 2yqk_A Arginine-glutamic acid 98.2 2.9E-06 9.9E-11 62.7 6.2 47 60-106 5-52 (63)
73 1ug2_A 2610100B20RIK gene prod 98.1 4.5E-06 1.5E-10 66.0 5.5 48 65-112 34-84 (95)
74 4eef_G F-HB80.4, designed hema 98.1 1.2E-06 4.3E-11 66.7 2.1 42 64-105 20-65 (74)
75 2lr8_A CAsp8-associated protei 97.1 1.6E-06 5.4E-11 65.2 0.0 44 66-110 16-62 (70)
76 2yqk_A Arginine-glutamic acid 97.8 1.2E-05 4.1E-10 59.3 4.0 49 7-56 4-53 (63)
77 4eef_G F-HB80.4, designed hema 97.8 3.2E-06 1.1E-10 64.5 0.4 44 12-55 20-66 (74)
78 3hm5_A DNA methyltransferase 1 97.8 3.7E-06 1.2E-10 67.0 0.7 46 12-58 30-80 (93)
79 4iej_A DNA methyltransferase 1 97.8 4.1E-05 1.4E-09 60.9 6.2 51 64-114 30-85 (93)
80 2crg_A Metastasis associated p 97.8 4.7E-05 1.6E-09 57.3 6.1 44 63-106 7-51 (70)
81 4a69_C Nuclear receptor corepr 97.7 4.8E-05 1.7E-09 60.4 5.6 44 64-107 43-86 (94)
82 2xag_B REST corepressor 1; ami 97.6 2.5E-05 8.6E-10 78.2 3.2 48 10-58 378-425 (482)
83 4a69_C Nuclear receptor corepr 97.5 6.4E-05 2.2E-09 59.7 3.5 44 12-56 43-86 (94)
84 2crg_A Metastasis associated p 97.4 0.00013 4.5E-09 54.9 4.2 46 10-56 6-52 (70)
85 4b4c_A Chromodomain-helicase-D 97.3 0.00044 1.5E-08 61.2 7.2 102 10-111 5-196 (211)
86 2y9y_A Imitation switch protei 97.2 0.00069 2.4E-08 65.9 8.3 102 13-114 124-294 (374)
87 2ebi_A DNA binding protein GT- 97.0 0.00011 3.6E-09 56.9 0.3 49 10-58 2-63 (86)
88 2lr8_A CAsp8-associated protei 95.9 0.00015 5.2E-09 54.5 0.0 45 14-59 16-62 (70)
89 2ebi_A DNA binding protein GT- 96.9 0.00065 2.2E-08 52.4 3.5 48 64-111 4-65 (86)
90 1ug2_A 2610100B20RIK gene prod 96.8 0.0008 2.7E-08 53.2 3.3 44 14-57 35-80 (95)
91 4iej_A DNA methyltransferase 1 96.1 0.0031 1.1E-07 50.1 2.9 46 12-58 30-80 (93)
92 1irz_A ARR10-B; helix-turn-hel 94.8 0.072 2.5E-06 39.4 6.3 47 63-109 6-57 (64)
93 1ofc_X ISWI protein; nuclear p 94.3 0.056 1.9E-06 51.2 6.0 51 64-115 110-161 (304)
94 4b4c_A Chromodomain-helicase-D 92.4 0.14 4.7E-06 45.0 5.0 53 63-116 6-63 (211)
95 1irz_A ARR10-B; helix-turn-hel 92.0 0.1 3.6E-06 38.5 3.1 48 9-56 4-55 (64)
96 2xb0_X Chromo domain-containin 90.1 0.21 7.1E-06 46.6 3.8 27 14-40 170-196 (270)
97 2xb0_X Chromo domain-containin 78.3 3.4 0.00011 38.4 6.1 47 64-110 3-54 (270)
98 2y9y_A Imitation switch protei 75.1 3.9 0.00013 39.7 5.7 50 65-115 124-175 (374)
99 2o8x_A Probable RNA polymerase 74.3 5.3 0.00018 27.7 5.0 43 67-111 16-58 (70)
100 1ku3_A Sigma factor SIGA; heli 69.9 7.5 0.00026 27.7 5.0 42 70-112 13-58 (73)
101 2p7v_B Sigma-70, RNA polymeras 66.4 7.7 0.00026 27.2 4.4 42 70-112 8-53 (68)
102 3hug_A RNA polymerase sigma fa 59.6 14 0.00048 27.4 5.0 41 70-111 40-80 (92)
103 2li6_A SWI/SNF chromatin-remod 58.1 7.8 0.00027 31.0 3.4 37 75-111 54-98 (116)
104 3cz6_A DNA-binding protein RAP 55.8 12 0.00041 32.3 4.4 31 8-41 110-148 (168)
105 2lm1_A Lysine-specific demethy 51.9 18 0.00062 28.2 4.6 38 74-111 48-97 (107)
106 1tty_A Sigma-A, RNA polymerase 51.4 24 0.00081 26.0 5.0 41 71-112 22-66 (87)
107 1x3u_A Transcriptional regulat 50.7 26 0.00087 24.7 4.9 43 67-112 17-59 (79)
108 1kkx_A Transcription regulator 50.1 11 0.00039 30.6 3.2 38 75-112 53-98 (123)
109 3ulq_B Transcriptional regulat 48.8 32 0.0011 25.8 5.5 46 64-112 27-72 (90)
110 2jrz_A Histone demethylase jar 47.4 17 0.00058 29.1 3.8 38 74-111 44-93 (117)
111 3c57_A Two component transcrip 47.4 29 0.001 26.1 5.0 44 66-112 27-70 (95)
112 1fse_A GERE; helix-turn-helix 46.8 30 0.001 23.9 4.8 45 65-112 10-54 (74)
113 1je8_A Nitrate/nitrite respons 46.4 29 0.00099 25.3 4.8 44 66-112 21-64 (82)
114 2cxy_A BAF250B subunit, HBAF25 46.1 21 0.00071 28.8 4.2 39 74-112 55-105 (125)
115 2q1z_A RPOE, ECF SIGE; ECF sig 45.8 20 0.00069 29.1 4.2 33 78-111 146-178 (184)
116 2jpc_A SSRB; DNA binding prote 45.0 35 0.0012 22.8 4.7 39 72-112 3-41 (61)
117 1or7_A Sigma-24, RNA polymeras 44.9 30 0.001 28.2 5.1 34 77-111 150-183 (194)
118 3cz6_A DNA-binding protein RAP 44.4 33 0.0011 29.6 5.3 83 20-108 64-152 (168)
119 2eqy_A RBP2 like, jumonji, at 43.9 22 0.00075 28.6 4.0 38 74-111 46-95 (122)
120 2rnj_A Response regulator prot 41.4 36 0.0012 25.1 4.6 44 66-112 29-72 (91)
121 3i4p_A Transcriptional regulat 40.1 30 0.001 28.4 4.4 45 70-115 3-48 (162)
122 1tc3_C Protein (TC3 transposas 39.9 63 0.0022 19.7 5.3 38 66-105 5-42 (51)
123 1xsv_A Hypothetical UPF0122 pr 38.5 49 0.0017 25.9 5.2 40 71-111 29-68 (113)
124 3mzy_A RNA polymerase sigma-H 38.4 41 0.0014 26.3 4.8 31 80-111 121-151 (164)
125 1k78_A Paired box protein PAX5 38.4 1.2E+02 0.004 23.9 7.7 77 13-93 31-118 (149)
126 1ntc_A Protein (nitrogen regul 38.2 49 0.0017 24.7 5.0 36 69-105 50-85 (91)
127 2jxj_A Histone demethylase jar 36.5 15 0.00052 28.1 1.8 35 75-109 41-87 (96)
128 1rp3_A RNA polymerase sigma fa 36.1 48 0.0016 27.7 5.2 38 73-111 193-230 (239)
129 3e7l_A Transcriptional regulat 35.6 47 0.0016 23.0 4.2 34 70-104 19-52 (63)
130 2kk0_A AT-rich interactive dom 35.3 37 0.0013 28.2 4.2 38 74-111 68-118 (145)
131 1ig6_A MRF-2, modulator recogn 34.8 26 0.00087 27.4 2.9 38 74-111 37-87 (107)
132 1c20_A DEAD ringer protein; DN 34.8 41 0.0014 27.1 4.3 38 74-111 56-106 (128)
133 2yqf_A Ankyrin-1; death domain 33.7 44 0.0015 26.1 4.2 35 68-103 14-48 (111)
134 2k27_A Paired box protein PAX- 33.6 1.8E+02 0.0062 23.2 9.8 76 14-93 25-111 (159)
135 1p4w_A RCSB; solution structur 32.4 76 0.0026 24.3 5.3 46 64-112 32-77 (99)
136 1s7o_A Hypothetical UPF0122 pr 30.9 77 0.0026 24.8 5.2 42 67-110 23-64 (113)
137 2jvw_A Uncharacterized protein 30.6 39 0.0013 26.1 3.2 45 20-76 18-69 (88)
138 2rq5_A Protein jumonji; develo 30.5 42 0.0014 27.2 3.6 38 74-111 46-96 (121)
139 2e1c_A Putative HTH-type trans 29.4 73 0.0025 26.5 5.2 46 69-115 26-72 (171)
140 2dbb_A Putative HTH-type trans 29.3 84 0.0029 25.0 5.4 45 70-115 9-54 (151)
141 2o71_A Death domain-containing 28.0 57 0.0019 26.0 4.0 28 74-102 26-53 (115)
142 2of5_A Death domain-containing 27.7 54 0.0018 26.1 3.8 28 74-102 26-53 (114)
143 2of5_H Leucine-rich repeat and 26.9 56 0.0019 25.9 3.7 30 72-102 13-42 (118)
144 2cyy_A Putative HTH-type trans 25.7 1E+02 0.0035 24.6 5.2 45 70-115 7-52 (151)
145 2p1m_A SKP1-like protein 1A; F 25.4 38 0.0013 28.2 2.6 35 36-77 119-153 (160)
146 1u78_A TC3 transposase, transp 25.0 2.3E+02 0.0078 21.5 8.6 88 13-105 5-100 (141)
147 1wxp_A THO complex subunit 1; 24.6 69 0.0024 24.9 3.8 31 72-103 18-48 (110)
148 1umq_A Photosynthetic apparatu 24.0 66 0.0023 24.1 3.5 35 69-104 40-74 (81)
149 3i4p_A Transcriptional regulat 22.9 17 0.00057 30.0 -0.2 40 18-58 3-42 (162)
150 3clo_A Transcriptional regulat 21.4 1.1E+02 0.0038 26.7 5.0 44 66-112 197-240 (258)
151 2cg4_A Regulatory protein ASNC 20.8 1.4E+02 0.0048 23.7 5.1 45 70-115 8-53 (152)
152 1k78_A Paired box protein PAX5 20.4 2.5E+02 0.0085 21.9 6.5 42 64-107 30-71 (149)
153 3t72_q RNA polymerase sigma fa 20.3 1.5E+02 0.0051 22.7 4.9 40 71-111 23-66 (99)
No 1
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=100.00 E-value=1.9e-34 Score=233.69 Aligned_cols=105 Identities=59% Similarity=1.102 Sum_probs=99.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCcccccccccccCCCcccCCCCChHHHHHHHHHHHHcCCChhh
Q 021071 9 DRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWAT 88 (317)
Q Consensus 9 ~~~KG~WT~EED~~L~~lV~kyG~~nW~~IA~~lp~Rs~kqCr~Rw~n~L~p~ikr~~WT~EED~~Li~lv~k~G~kWs~ 88 (317)
+++||+||+|||++|+++|++||..+|..||+.|++|+.+||++||.++|+|.+++++||+|||++|++++.+||++|+.
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~ 80 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAE 80 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHHH
Confidence 46899999999999999999999889999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCHHHHHHHHHHHHhhhh
Q 021071 89 IARLLNGRTDNAIKNHWNSTLKRKC 113 (317)
Q Consensus 89 IA~~lpgRT~~q~KnRw~~~lkrk~ 113 (317)
||++|||||+++|++||+.++++++
T Consensus 81 Ia~~l~gRt~~~~k~rw~~~~~~~~ 105 (105)
T 1gv2_A 81 IAKLLPGRTDNAIKNHWNSTMRRKV 105 (105)
T ss_dssp HHTTCTTCCHHHHHHHHHHHTC---
T ss_pred HHHHcCCCCHHHHHHHHHHHHhccC
Confidence 9999999999999999999998874
No 2
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=100.00 E-value=4.5e-34 Score=239.50 Aligned_cols=112 Identities=53% Similarity=0.945 Sum_probs=103.5
Q ss_pred cccccCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCcccccccccccCCCcccCCCCChHHHHHHHHHHHH
Q 021071 2 AFNRREVDRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHAR 81 (317)
Q Consensus 2 ~~n~~~~~~~KG~WT~EED~~L~~lV~kyG~~nW~~IA~~lp~Rs~kqCr~Rw~n~L~p~ikr~~WT~EED~~Li~lv~k 81 (317)
|.+..++..++|+||+|||++|+++|++||..+|..||+.|++|+.+||++||.++|+|.+++++||+|||++|++++.+
T Consensus 17 w~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~ 96 (128)
T 1h8a_C 17 WQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKR 96 (128)
T ss_dssp -----CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSSSCCSCCCHHHHHHHHHHHHH
T ss_pred HHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHH
Confidence 56778899999999999999999999999988999999999999999999999999999999999999999999999999
Q ss_pred cCCChhhhhhhcCCCCHHHHHHHHHHHHhhhh
Q 021071 82 FGNKWATIARLLNGRTDNAIKNHWNSTLKRKC 113 (317)
Q Consensus 82 ~G~kWs~IA~~lpgRT~~q~KnRw~~~lkrk~ 113 (317)
||++|+.||++|||||+++|++||+.++++++
T Consensus 97 ~G~~W~~Ia~~l~gRt~~~~k~r~~~~~~~~~ 128 (128)
T 1h8a_C 97 LGNRWAEIAKLLPGRTDNAVKNHWNSTMRRKV 128 (128)
T ss_dssp HCSCHHHHGGGSTTCCHHHHHHHHHTTTTC--
T ss_pred HCcCHHHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999998864
No 3
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=100.00 E-value=7e-34 Score=231.87 Aligned_cols=104 Identities=35% Similarity=0.698 Sum_probs=100.2
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCcccccccccccCCCcccCCCCChHHHHHHHHHHHHcCCChhhhhh
Q 021071 12 KGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIAR 91 (317)
Q Consensus 12 KG~WT~EED~~L~~lV~kyG~~nW~~IA~~lp~Rs~kqCr~Rw~n~L~p~ikr~~WT~EED~~Li~lv~k~G~kWs~IA~ 91 (317)
||+||+|||++|+++|++||..+|..||..|++|+++||++||.++|+|.+++++||+|||++|++++.+||++|+.||+
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia~ 80 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKISK 80 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHHH
Confidence 68999999999999999999889999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHhhhhcc
Q 021071 92 LLNGRTDNAIKNHWNSTLKRKCSS 115 (317)
Q Consensus 92 ~lpgRT~~q~KnRw~~~lkrk~~~ 115 (317)
+|+|||+++|++||+.++++....
T Consensus 81 ~l~gRt~~~~k~rw~~l~r~~~~~ 104 (107)
T 2k9n_A 81 FLKNRSDNNIRNRWMMIARHRAKH 104 (107)
T ss_dssp HHSSSCHHHHHHHHHHHHHHHHSS
T ss_pred HCCCCCHHHHHHHHHHHHhhHHHh
Confidence 999999999999999998886543
No 4
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=100.00 E-value=6.8e-34 Score=239.63 Aligned_cols=107 Identities=48% Similarity=0.935 Sum_probs=103.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCcccccccccccCCCcccCCCCChHHHHHHHHHHHHcCCChhhhh
Q 021071 11 IKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIA 90 (317)
Q Consensus 11 ~KG~WT~EED~~L~~lV~kyG~~nW~~IA~~lp~Rs~kqCr~Rw~n~L~p~ikr~~WT~EED~~Li~lv~k~G~kWs~IA 90 (317)
+||+||+|||++|+++|.+||..+|..||..|++|+++||++||.++|+|.+++++||+|||++|++++.+||++|+.||
T Consensus 1 vKg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia 80 (131)
T 3zqc_A 1 MKGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVIA 80 (131)
T ss_dssp CCSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCHHHHHHHHHHHHhhhhcccc
Q 021071 91 RLLNGRTDNAIKNHWNSTLKRKCSSML 117 (317)
Q Consensus 91 ~~lpgRT~~q~KnRw~~~lkrk~~~~~ 117 (317)
++|+|||+++|++||+.+|++++....
T Consensus 81 ~~l~gRt~~~~k~rw~~~l~~~~~~~~ 107 (131)
T 3zqc_A 81 KLIPGRTDNAIKNRWNSSISKRISTNS 107 (131)
T ss_dssp TTSTTCCHHHHHHHHHHTTGGGCCCCT
T ss_pred HHcCCCCHHHHHHHHHHHHHHHhhcCC
Confidence 999999999999999999999987654
No 5
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.98 E-value=6.3e-33 Score=232.46 Aligned_cols=106 Identities=37% Similarity=0.780 Sum_probs=100.9
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCcccccccccccCCCcccCCCCChHHHHHHHHHHHHcCCC
Q 021071 6 REVDRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNK 85 (317)
Q Consensus 6 ~~~~~~KG~WT~EED~~L~~lV~kyG~~nW~~IA~~lp~Rs~kqCr~Rw~n~L~p~ikr~~WT~EED~~Li~lv~k~G~k 85 (317)
.....+||+||+|||++|+++|.+||. +|..||+.|++|+.+||++||.++|+|.+++++||+|||++|++++.+||++
T Consensus 5 ~~~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~~ 83 (126)
T 3osg_A 5 NLKAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGRQ 83 (126)
T ss_dssp C-CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTCTTCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCSC
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcCCCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCcC
Confidence 355788999999999999999999997 8999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhcCCCCHHHHHHHHHHHHhhh
Q 021071 86 WATIARLLNGRTDNAIKNHWNSTLKRK 112 (317)
Q Consensus 86 Ws~IA~~lpgRT~~q~KnRw~~~lkrk 112 (317)
|+.||++|+|||+++|++||+.++++.
T Consensus 84 W~~Ia~~l~gRt~~~~k~rw~~l~~k~ 110 (126)
T 3osg_A 84 WAIIAKFFPGRTDIHIKNRWVTISNKL 110 (126)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence 999999999999999999998888765
No 6
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.97 E-value=5.7e-32 Score=234.20 Aligned_cols=112 Identities=55% Similarity=1.002 Sum_probs=106.4
Q ss_pred cccccCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCcccccccccccCCCcccCCCCChHHHHHHHHHHHH
Q 021071 2 AFNRREVDRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHAR 81 (317)
Q Consensus 2 ~~n~~~~~~~KG~WT~EED~~L~~lV~kyG~~nW~~IA~~lp~Rs~kqCr~Rw~n~L~p~ikr~~WT~EED~~Li~lv~k 81 (317)
|.+..++.+++|+||+|||++|+++|++||..+|..||+.|++|+.+||++||.++|+|.+++++||+|||++|++++.+
T Consensus 48 w~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~ 127 (159)
T 1h89_C 48 WQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKR 127 (159)
T ss_dssp HHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTSTTCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHH
T ss_pred HHHccCCCcCCCCCChHHHHHHHHHHHHhCcccHHHHHHHcCCCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHH
Confidence 45677889999999999999999999999988899999999999999999999999999999999999999999999999
Q ss_pred cCCChhhhhhhcCCCCHHHHHHHHHHHHhhhh
Q 021071 82 FGNKWATIARLLNGRTDNAIKNHWNSTLKRKC 113 (317)
Q Consensus 82 ~G~kWs~IA~~lpgRT~~q~KnRw~~~lkrk~ 113 (317)
||++|+.||++|||||+++||+||+.++++++
T Consensus 128 ~g~~W~~Ia~~l~gRt~~~~knr~~~~~r~~~ 159 (159)
T 1h89_C 128 LGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 159 (159)
T ss_dssp HCSCHHHHHTTSTTCCHHHHHHHHHTTTCC--
T ss_pred HCCCHHHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999998874
No 7
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.95 E-value=1.5e-29 Score=219.00 Aligned_cols=106 Identities=31% Similarity=0.727 Sum_probs=62.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCcccccccccccCCCcccCCCCChHHHHHHHHHHHHcCC-Chh
Q 021071 9 DRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGN-KWA 87 (317)
Q Consensus 9 ~~~KG~WT~EED~~L~~lV~kyG~~nW~~IA~~lp~Rs~kqCr~Rw~n~L~p~ikr~~WT~EED~~Li~lv~k~G~-kWs 87 (317)
...|++||+|||++|+++|++||..+|..||+.|++|+.+||++||.++|+|.+++++||+|||++|++++.+||. +|.
T Consensus 3 ~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~ 82 (159)
T 1h89_C 3 HLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRWS 82 (159)
T ss_dssp ----------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccHH
Confidence 4678999999999999999999998999999999999999999999999999999999999999999999999995 699
Q ss_pred hhhhhcCCCCHHHHHHHHHHHHhhhhc
Q 021071 88 TIARLLNGRTDNAIKNHWNSTLKRKCS 114 (317)
Q Consensus 88 ~IA~~lpgRT~~q~KnRw~~~lkrk~~ 114 (317)
.||.+|+|||+.+|++||+.+|...+.
T Consensus 83 ~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~ 109 (159)
T 1h89_C 83 VIAKHLKGRIGKQCRERWHNHLNPEVK 109 (159)
T ss_dssp HHHHTSTTCCHHHHHHHHHHTTCTTSC
T ss_pred HHHHHcCCCCHHHHHHHHHHHhCcccc
Confidence 999999999999999999999876654
No 8
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=8.6e-22 Score=149.06 Aligned_cols=66 Identities=29% Similarity=0.581 Sum_probs=63.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCcccccccccccCCCcccCCCCChHHH
Q 021071 7 EVDRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEED 72 (317)
Q Consensus 7 ~~~~~KG~WT~EED~~L~~lV~kyG~~nW~~IA~~lp~Rs~kqCr~Rw~n~L~p~ikr~~WT~EED 72 (317)
.+.+++|+||+|||++|+++|++||..+|..||+.|++|+.+||++||+++|+|.+++++||+|||
T Consensus 4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 567899999999999999999999988999999999999999999999999999999999999998
No 9
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.81 E-value=1.4e-20 Score=157.33 Aligned_cols=77 Identities=27% Similarity=0.670 Sum_probs=52.6
Q ss_pred HhhhCCCCCcccccccccccCCCcccCCCCChHHHHHHHHHHHHcCC-ChhhhhhhcCCCCHHHHHHHHHHHHhhhhc
Q 021071 38 ISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGN-KWATIARLLNGRTDNAIKNHWNSTLKRKCS 114 (317)
Q Consensus 38 IA~~lp~Rs~kqCr~Rw~n~L~p~ikr~~WT~EED~~Li~lv~k~G~-kWs~IA~~lpgRT~~q~KnRw~~~lkrk~~ 114 (317)
||+.|++|+++||++||.++|+|.+++++||+|||++|++++.+||. +|..||.+|+|||..+|++||+.+|...+.
T Consensus 1 Ia~~~~~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~ 78 (128)
T 1h8a_C 1 MEAVIKNRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVK 78 (128)
T ss_dssp ---------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSSSC
T ss_pred CccccCCCCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhcccccc
Confidence 78999999999999999999999999999999999999999999995 699999999999999999999998876544
No 10
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.76 E-value=5.6e-19 Score=161.97 Aligned_cols=105 Identities=29% Similarity=0.428 Sum_probs=92.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCC-----hHHHhhhCCCCCcccccccccccCCCccc-------------------
Q 021071 8 VDRIKGPWSPEEDEALQQLVQKHGPRN-----WSLISKSIPGRSGKSCRLRWCNQLSPQVE------------------- 63 (317)
Q Consensus 8 ~~~~KG~WT~EED~~L~~lV~kyG~~n-----W~~IA~~lp~Rs~kqCr~Rw~n~L~p~ik------------------- 63 (317)
....|++||+|||++|+++|.+||.++ |..||+.|+|||+.||++||.++|.+.++
T Consensus 4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~Gn~ 83 (246)
T 1ign_A 4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDGNL 83 (246)
T ss_dssp ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTSCB
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcccccccCcchhhhhccCCCc
Confidence 456788999999999999999998653 99999999999999999999999999886
Q ss_pred ----------CCCCChHHHHHHHHHHHH-c--------------------------------------------------
Q 021071 64 ----------HRAFTPEEDEMIIRAHAR-F-------------------------------------------------- 82 (317)
Q Consensus 64 ----------r~~WT~EED~~Li~lv~k-~-------------------------------------------------- 82 (317)
+..||.+||-.|+..+.+ |
T Consensus 84 ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 163 (246)
T 1ign_A 84 IKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYRTQ 163 (246)
T ss_dssp CEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------CCC
T ss_pred eeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhccc
Confidence 789999999999998876 1
Q ss_pred ---C----CChhhhhhhcCCCCHHHHHHHHHHHHhhh
Q 021071 83 ---G----NKWATIARLLNGRTDNAIKNHWNSTLKRK 112 (317)
Q Consensus 83 ---G----~kWs~IA~~lpgRT~~q~KnRw~~~lkrk 112 (317)
| ..|..||+.+|+||.+++|+||+.+++..
T Consensus 164 ~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 164 SRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp CCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred cccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence 1 15999999999999999999999988776
No 11
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.73 E-value=7.3e-19 Score=146.81 Aligned_cols=83 Identities=22% Similarity=0.337 Sum_probs=78.2
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHhhhC----CCCCcccccccccccCC-----CcccCC-CCChHHHHHH
Q 021071 6 REVDRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSI----PGRSGKSCRLRWCNQLS-----PQVEHR-AFTPEEDEMI 75 (317)
Q Consensus 6 ~~~~~~KG~WT~EED~~L~~lV~kyG~~nW~~IA~~l----p~Rs~kqCr~Rw~n~L~-----p~ikr~-~WT~EED~~L 75 (317)
...++.+++||+|||++|+++|++||.++|+.|++.+ ++||..+|++||.|+++ |.++++ +|++||+..|
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~rv 90 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRV 90 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHHH
Confidence 4678899999999999999999999988999999984 89999999999999997 999998 9999999999
Q ss_pred HHHHHHcCCChhh
Q 021071 76 IRAHARFGNKWAT 88 (317)
Q Consensus 76 i~lv~k~G~kWs~ 88 (317)
+.+|..|||+|++
T Consensus 91 ~~~h~~~gn~~~~ 103 (121)
T 2juh_A 91 LAAHAYWSQQQGK 103 (121)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHccchhc
Confidence 9999999999987
No 12
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.71 E-value=3.3e-18 Score=131.22 Aligned_cols=62 Identities=27% Similarity=0.384 Sum_probs=47.8
Q ss_pred cccccccccCCCcccCCCCChHHHHHHHHHHHHcCCChhhhhhhcCCCCHHHHHHHHHHHHhhh
Q 021071 49 SCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 112 (317)
Q Consensus 49 qCr~Rw~n~L~p~ikr~~WT~EED~~Li~lv~k~G~kWs~IA~~lpgRT~~q~KnRw~~~lkrk 112 (317)
...-||.|+|+|++++++||+|||++|++++.+||++|+.||+.| |||+++||+||+. |++.
T Consensus 8 ~~~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~-L~~~ 69 (73)
T 2llk_A 8 SSGRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRL-MKDT 69 (73)
T ss_dssp -----------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHH-CSCC
T ss_pred ccCcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHH-HHHH
Confidence 345689999999999999999999999999999999999999999 9999999999964 4444
No 13
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.70 E-value=6.7e-18 Score=141.19 Aligned_cols=80 Identities=23% Similarity=0.339 Sum_probs=74.6
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHhhhC----CCCCcccccccccccC-----CCcccCCCCChHH-HHHH
Q 021071 6 REVDRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSI----PGRSGKSCRLRWCNQL-----SPQVEHRAFTPEE-DEMI 75 (317)
Q Consensus 6 ~~~~~~KG~WT~EED~~L~~lV~kyG~~nW~~IA~~l----p~Rs~kqCr~Rw~n~L-----~p~ikr~~WT~EE-D~~L 75 (317)
...++.+++||+|||+.|+++|++||.++|..|++.+ ++||..+|++||.|++ +|.++++.|+++| ++.|
T Consensus 25 ~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v 104 (122)
T 2roh_A 25 FGQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRV 104 (122)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHH
T ss_pred cCCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHH
Confidence 4567889999999999999999999998999999964 8999999999999998 8999999999999 8999
Q ss_pred HHHHHHcCCC
Q 021071 76 IRAHARFGNK 85 (317)
Q Consensus 76 i~lv~k~G~k 85 (317)
+.+|+.|||+
T Consensus 105 ~~~h~~~g~~ 114 (122)
T 2roh_A 105 LAAQAYWSVD 114 (122)
T ss_dssp HHHHHHHHSS
T ss_pred HHHHHHHhhH
Confidence 9999999976
No 14
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.70 E-value=1e-17 Score=122.93 Aligned_cols=57 Identities=32% Similarity=0.687 Sum_probs=54.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCcccccccccccCCCccc
Q 021071 7 EVDRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVE 63 (317)
Q Consensus 7 ~~~~~KG~WT~EED~~L~~lV~kyG~~nW~~IA~~lp~Rs~kqCr~Rw~n~L~p~ik 63 (317)
.+.+++++||+|||++|+++|.+||..+|..||+.|++|+.+||++||.++|+|.++
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPSS 59 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCccC
Confidence 578899999999999999999999988899999999999999999999999999875
No 15
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.69 E-value=1.2e-17 Score=119.19 Aligned_cols=52 Identities=58% Similarity=1.136 Sum_probs=49.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCcccccccccccCCCc
Q 021071 10 RIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQ 61 (317)
Q Consensus 10 ~~KG~WT~EED~~L~~lV~kyG~~nW~~IA~~lp~Rs~kqCr~Rw~n~L~p~ 61 (317)
++||+||+|||++|+++|.+||..+|..||+.|++|+.+||++||.++|+|+
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE 52 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCcC
Confidence 4789999999999999999999888999999999999999999999999984
No 16
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.68 E-value=1.4e-17 Score=125.58 Aligned_cols=65 Identities=25% Similarity=0.327 Sum_probs=60.2
Q ss_pred cccCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCC--CCCcccccccccccCCCcccCCCCC
Q 021071 4 NRREVDRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIP--GRSGKSCRLRWCNQLSPQVEHRAFT 68 (317)
Q Consensus 4 n~~~~~~~KG~WT~EED~~L~~lV~kyG~~nW~~IA~~lp--~Rs~kqCr~Rw~n~L~p~ikr~~WT 68 (317)
+.+.+.+++++||+|||++|+++|++||..+|..||+.|+ +|+..||++||.++|+|.+.+...+
T Consensus 2 ~~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~~ 68 (69)
T 1ity_A 2 PEKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSE 68 (69)
T ss_dssp -CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCCC
Confidence 4677889999999999999999999999889999999999 9999999999999999999887664
No 17
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=1e-16 Score=119.74 Aligned_cols=60 Identities=20% Similarity=0.341 Sum_probs=56.6
Q ss_pred ccCCCcccCCCCChHHHHHHHHHHHHcCCChhhhhhhcCCCCHHHHHHHHHHHHhhhhccc
Q 021071 56 NQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCSSM 116 (317)
Q Consensus 56 n~L~p~ikr~~WT~EED~~Li~lv~k~G~kWs~IA~~lpgRT~~q~KnRw~~~lkrk~~~~ 116 (317)
.+|+|.+++++||+|||++|++++.+||++|..||+ ++|||++||++||+.+|+..+...
T Consensus 1 g~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~ 60 (66)
T 2din_A 1 GSSGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRD 60 (66)
T ss_dssp CCCSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChHhcCC
Confidence 379999999999999999999999999999999999 889999999999999999987764
No 18
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.66 E-value=2.5e-17 Score=117.37 Aligned_cols=52 Identities=37% Similarity=0.824 Sum_probs=48.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCcccccccccccCCCc
Q 021071 10 RIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQ 61 (317)
Q Consensus 10 ~~KG~WT~EED~~L~~lV~kyG~~nW~~IA~~lp~Rs~kqCr~Rw~n~L~p~ 61 (317)
+++|+||+|||++|+++|++||..+|..||+.|++|+.+||++||.++|+|+
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPE 52 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCcC
Confidence 3689999999999999999999878999999999999999999999999884
No 19
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.65 E-value=1.5e-16 Score=121.04 Aligned_cols=58 Identities=26% Similarity=0.394 Sum_probs=55.3
Q ss_pred CCCcccCCCCChHHHHHHHHHHHHcCCChhhhhhhcCCCCHHHHHHHHHHHHhhhhcc
Q 021071 58 LSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCSS 115 (317)
Q Consensus 58 L~p~ikr~~WT~EED~~Li~lv~k~G~kWs~IA~~lpgRT~~q~KnRw~~~lkrk~~~ 115 (317)
++|.+++++||+|||++|++++.+||++|..||++|+|||+++||+||+.++++++..
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc
Confidence 5789999999999999999999999999999999999999999999999999998665
No 20
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.61 E-value=1.2e-16 Score=119.44 Aligned_cols=55 Identities=33% Similarity=0.472 Sum_probs=49.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCC--CCCcccccccccccCCCccc
Q 021071 9 DRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIP--GRSGKSCRLRWCNQLSPQVE 63 (317)
Q Consensus 9 ~~~KG~WT~EED~~L~~lV~kyG~~nW~~IA~~lp--~Rs~kqCr~Rw~n~L~p~ik 63 (317)
..+|++||+|||++|+++|++||..+|..||+.++ +|+..||++||.|++++.++
T Consensus 8 ~~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~glN 64 (64)
T 3sjm_A 8 ITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN 64 (64)
T ss_dssp --CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCCC
Confidence 45788999999999999999999989999999875 99999999999999988764
No 21
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.61 E-value=3.9e-16 Score=114.41 Aligned_cols=56 Identities=29% Similarity=0.436 Sum_probs=51.7
Q ss_pred CCcccCCCCChHHHHHHHHHHHHcC-CChhhhhhhcCCCCHHHHHHHHHHHHhhhhc
Q 021071 59 SPQVEHRAFTPEEDEMIIRAHARFG-NKWATIARLLNGRTDNAIKNHWNSTLKRKCS 114 (317)
Q Consensus 59 ~p~ikr~~WT~EED~~Li~lv~k~G-~kWs~IA~~lpgRT~~q~KnRw~~~lkrk~~ 114 (317)
+|.+++++||+|||++|+++|.+|| ++|..||++|+|||+.||++||+++|+..++
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPSS 59 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCccC
Confidence 4678999999999999999999999 6999999999999999999999999876643
No 22
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.59 E-value=4.1e-16 Score=114.65 Aligned_cols=54 Identities=19% Similarity=0.370 Sum_probs=51.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCcccccccccccCCCc
Q 021071 8 VDRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQ 61 (317)
Q Consensus 8 ~~~~KG~WT~EED~~L~~lV~kyG~~nW~~IA~~lp~Rs~kqCr~Rw~n~L~p~ 61 (317)
+.+.+++||+|||++|+++|++||..+|..||++|++|+.+||++||.++|.+.
T Consensus 4 ~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~~ 57 (60)
T 1x41_A 4 GSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSGP 57 (60)
T ss_dssp CCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTCS
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccCC
Confidence 578899999999999999999999888999999999999999999999999764
No 23
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.58 E-value=1.7e-15 Score=107.85 Aligned_cols=50 Identities=30% Similarity=0.540 Sum_probs=45.9
Q ss_pred ccCCCCChHHHHHHHHHHHHcCC-ChhhhhhhcCCCCHHHHHHHHHHHHhh
Q 021071 62 VEHRAFTPEEDEMIIRAHARFGN-KWATIARLLNGRTDNAIKNHWNSTLKR 111 (317)
Q Consensus 62 ikr~~WT~EED~~Li~lv~k~G~-kWs~IA~~lpgRT~~q~KnRw~~~lkr 111 (317)
+++++||+|||++|+++|.+||. +|..||++|+|||+.||++||+++|+.
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP 51 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 47899999999999999999998 899999999999999999999998863
No 24
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.57 E-value=6.8e-16 Score=110.61 Aligned_cols=49 Identities=31% Similarity=0.435 Sum_probs=46.5
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCC--CCCcccccccccccCC
Q 021071 11 IKGPWSPEEDEALQQLVQKHGPRNWSLISKSIP--GRSGKSCRLRWCNQLS 59 (317)
Q Consensus 11 ~KG~WT~EED~~L~~lV~kyG~~nW~~IA~~lp--~Rs~kqCr~Rw~n~L~ 59 (317)
++|+||+|||++|+++|++||.++|..||..|+ +|++.||++||.++++
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence 579999999999999999999889999999999 9999999999999874
No 25
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.57 E-value=2.4e-15 Score=107.71 Aligned_cols=50 Identities=26% Similarity=0.494 Sum_probs=46.7
Q ss_pred cCCCCChHHHHHHHHHHHHcC-CChhhhhhhcC--CCCHHHHHHHHHHHHhhh
Q 021071 63 EHRAFTPEEDEMIIRAHARFG-NKWATIARLLN--GRTDNAIKNHWNSTLKRK 112 (317)
Q Consensus 63 kr~~WT~EED~~Li~lv~k~G-~kWs~IA~~lp--gRT~~q~KnRw~~~lkrk 112 (317)
++++||+|||++|+++|.+|| ++|+.||..|+ |||+.||++||+++++.|
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~k 53 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLK 53 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHTC-
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHccC
Confidence 478999999999999999999 79999999999 999999999999998864
No 26
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.57 E-value=3.9e-15 Score=112.14 Aligned_cols=60 Identities=23% Similarity=0.378 Sum_probs=54.8
Q ss_pred cCCCcccCCCCChHHHHHHHHHHHHcC-CChhhhhhhcC--CCCHHHHHHHHHHHHhhhhccc
Q 021071 57 QLSPQVEHRAFTPEEDEMIIRAHARFG-NKWATIARLLN--GRTDNAIKNHWNSTLKRKCSSM 116 (317)
Q Consensus 57 ~L~p~ikr~~WT~EED~~Li~lv~k~G-~kWs~IA~~lp--gRT~~q~KnRw~~~lkrk~~~~ 116 (317)
..++..++++||+|||++|+++|.+|| ++|+.||.+|+ |||+.||++||+.+|+..+.+.
T Consensus 3 ~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~ 65 (69)
T 1ity_A 3 EKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISS 65 (69)
T ss_dssp CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCC
Confidence 345677899999999999999999999 79999999999 9999999999999999987654
No 27
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.56 E-value=3.8e-15 Score=109.44 Aligned_cols=53 Identities=17% Similarity=0.357 Sum_probs=49.2
Q ss_pred CCcccCCCCChHHHHHHHHHHHHcC-CChhhhhhhcCCCCHHHHHHHHHHHHhh
Q 021071 59 SPQVEHRAFTPEEDEMIIRAHARFG-NKWATIARLLNGRTDNAIKNHWNSTLKR 111 (317)
Q Consensus 59 ~p~ikr~~WT~EED~~Li~lv~k~G-~kWs~IA~~lpgRT~~q~KnRw~~~lkr 111 (317)
.+.+.+++||+|||++|+++|.+|| ++|..||++|+|||+.||++||+++|..
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~ 56 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSG 56 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccC
Confidence 3567899999999999999999999 8999999999999999999999988764
No 28
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=3.7e-16 Score=116.71 Aligned_cols=60 Identities=25% Similarity=0.404 Sum_probs=55.2
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCcccccccccccCCCcccCCC
Q 021071 5 RREVDRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRA 66 (317)
Q Consensus 5 ~~~~~~~KG~WT~EED~~L~~lV~kyG~~nW~~IA~~lp~Rs~kqCr~Rw~n~L~p~ikr~~ 66 (317)
..++.+++++||+|||++|+++|+.||. +|..||+ +++|+.+||++||+++|++.++++.
T Consensus 2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~~ 61 (66)
T 2din_A 2 SSGSSGKKTEWSREEEEKLLHLAKLMPT-QWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRDS 61 (66)
T ss_dssp CCSSSSSCCCCCHHHHHHHHHHHHHCTT-CHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCC-CHHHHhc-ccCcCHHHHHHHHHHHhChHhcCCC
Confidence 4678999999999999999999999996 7999999 8899999999999999998877653
No 29
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.55 E-value=3.6e-15 Score=106.27 Aligned_cols=49 Identities=29% Similarity=0.689 Sum_probs=46.1
Q ss_pred ccCCCCChHHHHHHHHHHHHcCC-ChhhhhhhcCCCCHHHHHHHHHHHHh
Q 021071 62 VEHRAFTPEEDEMIIRAHARFGN-KWATIARLLNGRTDNAIKNHWNSTLK 110 (317)
Q Consensus 62 ikr~~WT~EED~~Li~lv~k~G~-kWs~IA~~lpgRT~~q~KnRw~~~lk 110 (317)
+++++||+|||++|++++.+||. +|..||+.|+|||+.||++||+++|+
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~ 50 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLN 50 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTS
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence 47899999999999999999997 69999999999999999999998875
No 30
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=4.1e-15 Score=112.25 Aligned_cols=57 Identities=25% Similarity=0.478 Sum_probs=52.9
Q ss_pred CCcccCCCCChHHHHHHHHHHHHcC-CChhhhhhhcCCCCHHHHHHHHHHHHhhhhcc
Q 021071 59 SPQVEHRAFTPEEDEMIIRAHARFG-NKWATIARLLNGRTDNAIKNHWNSTLKRKCSS 115 (317)
Q Consensus 59 ~p~ikr~~WT~EED~~Li~lv~k~G-~kWs~IA~~lpgRT~~q~KnRw~~~lkrk~~~ 115 (317)
.+.+++++||+|||++|+++|.+|| ++|..||.+|+|||+.||++||+++|+..+.+
T Consensus 4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~ 61 (70)
T 2dim_A 4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKK 61 (70)
T ss_dssp CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccC
Confidence 4678999999999999999999999 89999999999999999999999999877654
No 31
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.54 E-value=2.2e-15 Score=110.17 Aligned_cols=51 Identities=20% Similarity=0.437 Sum_probs=47.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCC-CCCcccccccccccC
Q 021071 8 VDRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIP-GRSGKSCRLRWCNQL 58 (317)
Q Consensus 8 ~~~~KG~WT~EED~~L~~lV~kyG~~nW~~IA~~lp-~Rs~kqCr~Rw~n~L 58 (317)
..+.+++||+|||++|+++|++||..+|..||++|+ +|+.+||++||.+++
T Consensus 5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999999889999999999 999999999999875
No 32
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=1.4e-15 Score=116.16 Aligned_cols=60 Identities=22% Similarity=0.316 Sum_probs=55.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCC-----CChHHHhhhCCCCCcccccccccccCCCcccCCC
Q 021071 7 EVDRIKGPWSPEEDEALQQLVQKHGP-----RNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRA 66 (317)
Q Consensus 7 ~~~~~KG~WT~EED~~L~~lV~kyG~-----~nW~~IA~~lp~Rs~kqCr~Rw~n~L~p~ikr~~ 66 (317)
++...+++||+|||++|+++|.+||. .+|..||++|++||.+||++||+++|.+.++.+.
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~g~ 67 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKAGI 67 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTTCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCC
Confidence 57889999999999999999999996 6799999999999999999999999988776654
No 33
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=9e-15 Score=111.66 Aligned_cols=57 Identities=18% Similarity=0.303 Sum_probs=52.5
Q ss_pred CCcccCCCCChHHHHHHHHHHHHcC------CChhhhhhhcCCCCHHHHHHHHHHHHhhhhcc
Q 021071 59 SPQVEHRAFTPEEDEMIIRAHARFG------NKWATIARLLNGRTDNAIKNHWNSTLKRKCSS 115 (317)
Q Consensus 59 ~p~ikr~~WT~EED~~Li~lv~k~G------~kWs~IA~~lpgRT~~q~KnRw~~~lkrk~~~ 115 (317)
+|.+++++||+|||++|++++.+|| ++|..||.+|+|||..||++||+++|++.+..
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~ 65 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKA 65 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhc
Confidence 5778899999999999999999999 78999999999999999999999999876543
No 34
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.50 E-value=1.9e-14 Score=107.43 Aligned_cols=52 Identities=25% Similarity=0.508 Sum_probs=47.0
Q ss_pred ccCCCCChHHHHHHHHHHHHcC-CChhhhhhhcC--CCCHHHHHHHHHHHHhhhh
Q 021071 62 VEHRAFTPEEDEMIIRAHARFG-NKWATIARLLN--GRTDNAIKNHWNSTLKRKC 113 (317)
Q Consensus 62 ikr~~WT~EED~~Li~lv~k~G-~kWs~IA~~lp--gRT~~q~KnRw~~~lkrk~ 113 (317)
.++++||+|||++|+++|.+|| ++|+.||+.++ |||+.||++||++++|..+
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~gl 63 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 63 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCC
Confidence 4688999999999999999999 58999999865 9999999999999988654
No 35
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.49 E-value=3.8e-15 Score=113.15 Aligned_cols=58 Identities=24% Similarity=0.298 Sum_probs=53.2
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCcccccccccccCCCcccC
Q 021071 6 REVDRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEH 64 (317)
Q Consensus 6 ~~~~~~KG~WT~EED~~L~~lV~kyG~~nW~~IA~~lp~Rs~kqCr~Rw~n~L~p~ikr 64 (317)
..+...+++||+|||++|+++|++||. +|..||++|++|+..||++||+++|.+.++.
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGR-RWTKISKLIGSRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc
Confidence 357889999999999999999999996 7999999999999999999999998776655
No 36
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.48 E-value=1.3e-14 Score=111.22 Aligned_cols=57 Identities=30% Similarity=0.447 Sum_probs=47.1
Q ss_pred cccccCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCcccccccccccCCCc
Q 021071 2 AFNRREVDRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQ 61 (317)
Q Consensus 2 ~~n~~~~~~~KG~WT~EED~~L~~lV~kyG~~nW~~IA~~lp~Rs~kqCr~Rw~n~L~p~ 61 (317)
+.+..+++.++|+||+|||++|+++|++||.+ |+.||+.| +|+..||++||.. |...
T Consensus 13 ~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~k-W~~IA~~l-gRt~~q~knRw~~-L~~~ 69 (73)
T 2llk_A 13 NLYFQGDRNHVGKYTPEEIEKLKELRIKHGND-WATIGAAL-GRSASSVKDRCRL-MKDT 69 (73)
T ss_dssp ------CCCCCCSSCHHHHHHHHHHHHHHSSC-HHHHHHHH-TSCHHHHHHHHHH-CSCC
T ss_pred eeeecCCCCCCCCCCHHHHHHHHHHHHHHCCC-HHHHHHHh-CCCHHHHHHHHHH-HHHH
Confidence 56889999999999999999999999999966 99999999 9999999999975 4433
No 37
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=99.22 E-value=2.8e-15 Score=118.67 Aligned_cols=57 Identities=23% Similarity=0.335 Sum_probs=53.5
Q ss_pred cCCCcccCCCCChHHHHHHHHHHHHcCCChhhhhhhcCCCCHHHHHHHHHHHHhhhh
Q 021071 57 QLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKC 113 (317)
Q Consensus 57 ~L~p~ikr~~WT~EED~~Li~lv~k~G~kWs~IA~~lpgRT~~q~KnRw~~~lkrk~ 113 (317)
.+.|.+++++||+|||++|++++.+||++|..||.+|+|||+++|++||+.++++..
T Consensus 9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~~ 65 (89)
T 2ltp_A 9 SGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQN 65 (89)
Confidence 467889999999999999999999999999999999999999999999999988763
No 38
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.48 E-value=4.6e-14 Score=103.14 Aligned_cols=49 Identities=24% Similarity=0.477 Sum_probs=45.7
Q ss_pred cccCCCCChHHHHHHHHHHHHcC-CChhhhhhhcC-CCCHHHHHHHHHHHH
Q 021071 61 QVEHRAFTPEEDEMIIRAHARFG-NKWATIARLLN-GRTDNAIKNHWNSTL 109 (317)
Q Consensus 61 ~ikr~~WT~EED~~Li~lv~k~G-~kWs~IA~~lp-gRT~~q~KnRw~~~l 109 (317)
.+.+++||+|||++|++++.+|| ++|..||++|+ +||+.||++||++++
T Consensus 6 p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 6 SGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 45688999999999999999999 89999999999 999999999998765
No 39
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.46 E-value=2.6e-14 Score=116.65 Aligned_cols=79 Identities=28% Similarity=0.387 Sum_probs=69.8
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHhhhC----CCCCcccccccccccC-----CCcccCCCCChHHHHH-H
Q 021071 6 REVDRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSI----PGRSGKSCRLRWCNQL-----SPQVEHRAFTPEEDEM-I 75 (317)
Q Consensus 6 ~~~~~~KG~WT~EED~~L~~lV~kyG~~nW~~IA~~l----p~Rs~kqCr~Rw~n~L-----~p~ikr~~WT~EED~~-L 75 (317)
...++++++||+|||++|+++|++||.++|..|++.+ ++||..+|++||.|++ +|.++++.-+++|--. +
T Consensus 7 ~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~rv 86 (105)
T 2aje_A 7 DPQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLNRV 86 (105)
T ss_dssp --CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHHHH
Confidence 4568899999999999999999999998999999965 8999999999999988 7899999888887776 8
Q ss_pred HHHHHHcCC
Q 021071 76 IRAHARFGN 84 (317)
Q Consensus 76 i~lv~k~G~ 84 (317)
+++++.+|+
T Consensus 87 ~~~~~~~~~ 95 (105)
T 2aje_A 87 LNAHGYWTQ 95 (105)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 899888764
No 40
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.46 E-value=1.9e-14 Score=120.78 Aligned_cols=87 Identities=30% Similarity=0.518 Sum_probs=64.7
Q ss_pred cccccCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCcccccccccccCCCcccCCCCChHHHHHHHHHHHH
Q 021071 2 AFNRREVDRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHAR 81 (317)
Q Consensus 2 ~~n~~~~~~~KG~WT~EED~~L~~lV~kyG~~nW~~IA~~lp~Rs~kqCr~Rw~n~L~p~ikr~~WT~EED~~Li~lv~k 81 (317)
|.+..++..++|+||+|||++|+++|.+||. +|..||+.|+||+..+|++||+++|++.++.+.|+.+- +.....
T Consensus 44 w~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~-~W~~Ia~~l~gRt~~~~k~rw~~~l~~~~~~~~~~~~~----~~p~~~ 118 (131)
T 3zqc_A 44 WFNHLDPAVVKHAWTPEEDETIFRNYLKLGS-KWSVIAKLIPGRTDNAIKNRWNSSISKRISTNSNHKEI----LLPDRS 118 (131)
T ss_dssp HHHHTSTTCCCSCCCHHHHHHHHHHHHHSCS-CHHHHTTTSTTCCHHHHHHHHHHTTGGGCCCCTTSCCC----CCCCCC
T ss_pred HhhccCccccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCCCcccc----cCchhh
Confidence 4567889999999999999999999999995 59999999999999999999999999999999887763 111123
Q ss_pred cCCChhhhhhhc
Q 021071 82 FGNKWATIARLL 93 (317)
Q Consensus 82 ~G~kWs~IA~~l 93 (317)
.+.+|+.|++.|
T Consensus 119 kk~~~~~i~k~~ 130 (131)
T 3zqc_A 119 KKRKAADVPKKL 130 (131)
T ss_dssp ------------
T ss_pred hhhhhhhcchhc
Confidence 346688888765
No 41
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.45 E-value=5.7e-14 Score=110.12 Aligned_cols=69 Identities=23% Similarity=0.355 Sum_probs=61.2
Q ss_pred CCCCHHHHHHHHHHHHHhCCCChHHHhhh----CCCCCcccccccccccC-----CCcccCC-CCChHHHHHHHHHHHH
Q 021071 13 GPWSPEEDEALQQLVQKHGPRNWSLISKS----IPGRSGKSCRLRWCNQL-----SPQVEHR-AFTPEEDEMIIRAHAR 81 (317)
Q Consensus 13 G~WT~EED~~L~~lV~kyG~~nW~~IA~~----lp~Rs~kqCr~Rw~n~L-----~p~ikr~-~WT~EED~~Li~lv~k 81 (317)
++||+|||++|+++|++||.++|+.|++. |++||..+|++||.|++ +|.++++ +..++..+.++.+++.
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a~ 79 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAY 79 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHHH
Confidence 47999999999999999999899999996 89999999999999987 6776655 6777887889999864
No 42
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.38 E-value=3.3e-13 Score=103.39 Aligned_cols=52 Identities=12% Similarity=0.307 Sum_probs=47.5
Q ss_pred CcccCCCCChHHHHHHHHHHHHcC----CChhhhhhhcCCCCHHHHHHHHHHHHhh
Q 021071 60 PQVEHRAFTPEEDEMIIRAHARFG----NKWATIARLLNGRTDNAIKNHWNSTLKR 111 (317)
Q Consensus 60 p~ikr~~WT~EED~~Li~lv~k~G----~kWs~IA~~lpgRT~~q~KnRw~~~lkr 111 (317)
+.+++++||.+||++|+.++.+|| ++|.+||++|||||.++|++||+.+++.
T Consensus 14 ~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~d 69 (73)
T 2cqr_A 14 ARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVSG 69 (73)
T ss_dssp TTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHSS
T ss_pred cccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 456788999999999999999999 6899999999999999999999887754
No 43
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.37 E-value=3e-13 Score=105.01 Aligned_cols=52 Identities=15% Similarity=0.342 Sum_probs=47.7
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCcccccccccccC
Q 021071 6 REVDRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQL 58 (317)
Q Consensus 6 ~~~~~~KG~WT~EED~~L~~lV~kyG~~nW~~IA~~lp~Rs~kqCr~Rw~n~L 58 (317)
+.....+++||+|||++|+++|++|| .+|..||++|++||..||+.||.++.
T Consensus 12 ~~~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~~RT~~qcr~r~~~~~ 63 (79)
T 2yus_A 12 SKGASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVGSRTQDECILHFLRLP 63 (79)
T ss_dssp CCSSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHSSCCHHHHHHHHTTSC
T ss_pred ccccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcCCCCHHHHHHHHHHhc
Confidence 34556789999999999999999999 78999999999999999999999984
No 44
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.33 E-value=6.6e-13 Score=103.02 Aligned_cols=48 Identities=17% Similarity=0.369 Sum_probs=44.2
Q ss_pred cccCCCCChHHHHHHHHHHHHcCCChhhhhhhcCCCCHHHHHHHHHHH
Q 021071 61 QVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNST 108 (317)
Q Consensus 61 ~ikr~~WT~EED~~Li~lv~k~G~kWs~IA~~lpgRT~~q~KnRw~~~ 108 (317)
...+++||+|||++|++++.+||++|..||++|++||..||++||+.+
T Consensus 15 ~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 15 ASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL 62 (79)
T ss_dssp SCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred cccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 456789999999999999999999999999999999999999999533
No 45
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.32 E-value=5e-13 Score=107.60 Aligned_cols=58 Identities=26% Similarity=0.532 Sum_probs=52.6
Q ss_pred cccccCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCcccccccccccCCC
Q 021071 2 AFNRREVDRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSP 60 (317)
Q Consensus 2 ~~n~~~~~~~KG~WT~EED~~L~~lV~kyG~~nW~~IA~~lp~Rs~kqCr~Rw~n~L~p 60 (317)
|.+..++..++|+||+|||++|+++|.+||. +|..||+.||||+..+|++||.++++.
T Consensus 46 w~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~-~W~~Ia~~l~gRt~~~~k~rw~~~~~~ 103 (105)
T 1gv2_A 46 WHNHLNPEVKKTSWTEEEDRIIYQAHKRLGN-RWAEIAKLLPGRTDNAIKNHWNSTMRR 103 (105)
T ss_dssp HHHTTCCCCCCCCCCHHHHHHHHHHHHHHSS-CHHHHHTTCTTCCHHHHHHHHHHHTC-
T ss_pred HHhccCCcccccCCCHHHHHHHHHHHHHhCC-CHHHHHHHcCCCCHHHHHHHHHHHHhc
Confidence 3456788999999999999999999999995 699999999999999999999988864
No 46
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.30 E-value=2.5e-12 Score=107.18 Aligned_cols=57 Identities=33% Similarity=0.591 Sum_probs=51.8
Q ss_pred CCcccCCCCChHHHHHHHHHHHHcCCChhhhhhhcCCCCHHHHHHHHHHHHhhhhcc
Q 021071 59 SPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCSS 115 (317)
Q Consensus 59 ~p~ikr~~WT~EED~~Li~lv~k~G~kWs~IA~~lpgRT~~q~KnRw~~~lkrk~~~ 115 (317)
.+..++++||+|||++|++++.+||.+|..||..|+|||..||+.||+.+|...+..
T Consensus 6 ~~~~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~ 62 (126)
T 3osg_A 6 LKAAKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYLAPSISH 62 (126)
T ss_dssp -CBCSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHTSTTSCC
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhccccccc
Confidence 456789999999999999999999999999999999999999999999999776543
No 47
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.97 E-value=2.3e-13 Score=107.68 Aligned_cols=54 Identities=20% Similarity=0.369 Sum_probs=50.0
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCcccccccccccCCC
Q 021071 6 REVDRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSP 60 (317)
Q Consensus 6 ~~~~~~KG~WT~EED~~L~~lV~kyG~~nW~~IA~~lp~Rs~kqCr~Rw~n~L~p 60 (317)
..+...+|+||+|||++|+++|..||. +|..||+.|++||..||++||+++|..
T Consensus 10 ~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~~l~gRt~~q~k~r~~~~lrk 63 (89)
T 2ltp_A 10 GRENLYFQGWTEEEMGTAKKGLLEHGR-NWSAIARMVGSKTVSQCKNFYFNYKKR 63 (89)
Confidence 467889999999999999999999996 699999999999999999999998853
No 48
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.29 E-value=3e-12 Score=94.94 Aligned_cols=50 Identities=20% Similarity=0.448 Sum_probs=46.2
Q ss_pred cCCCCChHHHHHHHHHHHHcCCChhhhh---hhcCCCCHHHHHHHHHHHHhhh
Q 021071 63 EHRAFTPEEDEMIIRAHARFGNKWATIA---RLLNGRTDNAIKNHWNSTLKRK 112 (317)
Q Consensus 63 kr~~WT~EED~~Li~lv~k~G~kWs~IA---~~lpgRT~~q~KnRw~~~lkrk 112 (317)
++.+||+|||+.|+++|.+||.+|+.|+ .++++||..+||+||+.+.|+.
T Consensus 7 ~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~~ 59 (62)
T 1x58_A 7 GRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISGP 59 (62)
T ss_dssp CSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTCS
T ss_pred CCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhcc
Confidence 6789999999999999999999999999 5789999999999998887754
No 49
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.29 E-value=3.4e-13 Score=109.35 Aligned_cols=59 Identities=36% Similarity=0.510 Sum_probs=53.2
Q ss_pred cccccCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCcccccccccccCCCc
Q 021071 2 AFNRREVDRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQ 61 (317)
Q Consensus 2 ~~n~~~~~~~KG~WT~EED~~L~~lV~kyG~~nW~~IA~~lp~Rs~kqCr~Rw~n~L~p~ 61 (317)
|.+..++.+++|+||+|||++|+++|.+||. +|..||+.|++|+..+|++||+.+++..
T Consensus 43 w~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~-~W~~Ia~~l~gRt~~~~k~rw~~l~r~~ 101 (107)
T 2k9n_A 43 WNNYINPALRTDPWSPEEDMLLDQKYAEYGP-KWNKISKFLKNRSDNNIRNRWMMIARHR 101 (107)
T ss_dssp HHHHSSSCCTTCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHSSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHcccccccccCHHHHHHHHHHHHHhCc-CHHHHHHHCCCCCHHHHHHHHHHHHhhH
Confidence 4566889999999999999999999999996 6999999999999999999998876543
No 50
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.28 E-value=5.7e-13 Score=102.04 Aligned_cols=54 Identities=20% Similarity=0.497 Sum_probs=48.0
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHhC---CCChHHHhhhCCCCCcccccccccccCC
Q 021071 6 REVDRIKGPWSPEEDEALQQLVQKHG---PRNWSLISKSIPGRSGKSCRLRWCNQLS 59 (317)
Q Consensus 6 ~~~~~~KG~WT~EED~~L~~lV~kyG---~~nW~~IA~~lp~Rs~kqCr~Rw~n~L~ 59 (317)
......+++||+|||++|+.++.+|| +.+|.+||++|||||.+||++||++++.
T Consensus 12 ~~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 12 ERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVS 68 (73)
T ss_dssp CTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred cccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 34566788999999999999999998 3569999999999999999999998764
No 51
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.28 E-value=3.9e-12 Score=99.67 Aligned_cols=50 Identities=22% Similarity=0.484 Sum_probs=45.8
Q ss_pred CCCChHHHHHHHHHHHHcCC-Chhhhhhh----cCCCCHHHHHHHHHHHHhhhhc
Q 021071 65 RAFTPEEDEMIIRAHARFGN-KWATIARL----LNGRTDNAIKNHWNSTLKRKCS 114 (317)
Q Consensus 65 ~~WT~EED~~Li~lv~k~G~-kWs~IA~~----lpgRT~~q~KnRw~~~lkrk~~ 114 (317)
++||+|||+.|+++|.+||. +|+.|++. |+|||+++||+||+++++....
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~~ 55 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASI 55 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhccC
Confidence 47999999999999999997 99999996 8999999999999999986643
No 52
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.25 E-value=3.1e-12 Score=117.44 Aligned_cols=55 Identities=24% Similarity=0.458 Sum_probs=49.1
Q ss_pred CcccCCCCChHHHHHHHHHHHHcCCC------hhhhhhhcCCCCHHHHHHHHHHHHhhhhc
Q 021071 60 PQVEHRAFTPEEDEMIIRAHARFGNK------WATIARLLNGRTDNAIKNHWNSTLKRKCS 114 (317)
Q Consensus 60 p~ikr~~WT~EED~~Li~lv~k~G~k------Ws~IA~~lpgRT~~q~KnRw~~~lkrk~~ 114 (317)
+.+++++||+|||++|+++|++||++ |+.||++|+|||+++||+||+.+|++++.
T Consensus 4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln 64 (246)
T 1ign_A 4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLE 64 (246)
T ss_dssp ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcc
Confidence 35688999999999999999999975 99999999999999999999999999876
No 53
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.23 E-value=9.2e-12 Score=101.55 Aligned_cols=55 Identities=20% Similarity=0.426 Sum_probs=49.4
Q ss_pred CcccCCCCChHHHHHHHHHHHHcCC-Chhhhhhhc----CCCCHHHHHHHHHHHHhhhhc
Q 021071 60 PQVEHRAFTPEEDEMIIRAHARFGN-KWATIARLL----NGRTDNAIKNHWNSTLKRKCS 114 (317)
Q Consensus 60 p~ikr~~WT~EED~~Li~lv~k~G~-kWs~IA~~l----pgRT~~q~KnRw~~~lkrk~~ 114 (317)
...++++||.|||+.|+++|.+||. +|+.|++.+ +|||+.+||+||+++++....
T Consensus 9 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~ 68 (105)
T 2aje_A 9 QRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKI 68 (105)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccC
Confidence 4567899999999999999999997 999999965 899999999999999986643
No 54
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.22 E-value=8.2e-12 Score=104.18 Aligned_cols=55 Identities=24% Similarity=0.471 Sum_probs=50.2
Q ss_pred CCCcccCCCCChHHHHHHHHHHHHcCC-Chhhhhhhc----CCCCHHHHHHHHHHHHhhh
Q 021071 58 LSPQVEHRAFTPEEDEMIIRAHARFGN-KWATIARLL----NGRTDNAIKNHWNSTLKRK 112 (317)
Q Consensus 58 L~p~ikr~~WT~EED~~Li~lv~k~G~-kWs~IA~~l----pgRT~~q~KnRw~~~lkrk 112 (317)
+.+..++++||.|||+.|+++|.+||. +|+.|++.+ +|||+.+||+||+++++..
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~ 70 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA 70 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhh
Confidence 456778999999999999999999997 999999984 8999999999999999854
No 55
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.20 E-value=1.6e-11 Score=98.14 Aligned_cols=50 Identities=28% Similarity=0.595 Sum_probs=45.5
Q ss_pred cCCCCChHHHHHHHHHHHHcC----CChhhhhhhcCCCCHHHHHHHHHHHHhhh
Q 021071 63 EHRAFTPEEDEMIIRAHARFG----NKWATIARLLNGRTDNAIKNHWNSTLKRK 112 (317)
Q Consensus 63 kr~~WT~EED~~Li~lv~k~G----~kWs~IA~~lpgRT~~q~KnRw~~~lkrk 112 (317)
.+++||.|||++|++++.+|| ++|.+||++|||||.++|++||+.+++..
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv 60 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDI 60 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 467899999999999999996 67999999999999999999999888664
No 56
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.16 E-value=3.3e-11 Score=100.70 Aligned_cols=54 Identities=22% Similarity=0.454 Sum_probs=48.4
Q ss_pred CcccCCCCChHHHHHHHHHHHHcCC-Chhhhhhhc----CCCCHHHHHHHHHHHHhhhh
Q 021071 60 PQVEHRAFTPEEDEMIIRAHARFGN-KWATIARLL----NGRTDNAIKNHWNSTLKRKC 113 (317)
Q Consensus 60 p~ikr~~WT~EED~~Li~lv~k~G~-kWs~IA~~l----pgRT~~q~KnRw~~~lkrk~ 113 (317)
...++++||.|||+.|+++|.+||. +|+.|++.+ ++||..+||+||+++++...
T Consensus 27 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~ 85 (122)
T 2roh_A 27 QRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTAS 85 (122)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhcc
Confidence 3457899999999999999999996 999999974 89999999999999997653
No 57
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.06 E-value=3.3e-11 Score=96.23 Aligned_cols=48 Identities=19% Similarity=0.526 Sum_probs=43.5
Q ss_pred CCCCCCHHHHHHHHHHHHHhC---CCChHHHhhhCCCCCcccccccccccC
Q 021071 11 IKGPWSPEEDEALQQLVQKHG---PRNWSLISKSIPGRSGKSCRLRWCNQL 58 (317)
Q Consensus 11 ~KG~WT~EED~~L~~lV~kyG---~~nW~~IA~~lp~Rs~kqCr~Rw~n~L 58 (317)
.+++||+|||++|.+++.+|+ +..|.+||+.|||||.++|++||++++
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~ 57 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILV 57 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 467899999999999999997 456999999999999999999998864
No 58
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.00 E-value=5.1e-10 Score=82.36 Aligned_cols=48 Identities=17% Similarity=0.135 Sum_probs=43.8
Q ss_pred cCCCCChHHHHHHHHHHHHcCCChhhhhhhcCCCCHHHHHHHHHHHHh
Q 021071 63 EHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLK 110 (317)
Q Consensus 63 kr~~WT~EED~~Li~lv~k~G~kWs~IA~~lpgRT~~q~KnRw~~~lk 110 (317)
...+||+||++++++++.+||++|..||.+|++||..+|..+|....|
T Consensus 11 ~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~Kk 58 (61)
T 2eqr_A 11 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTKK 58 (61)
T ss_dssp CCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHTC
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhcC
Confidence 457899999999999999999999999999999999999999965443
No 59
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.89 E-value=5.7e-10 Score=82.69 Aligned_cols=50 Identities=20% Similarity=0.252 Sum_probs=45.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCChHHHh---hhCCCCCcccccccccccCC
Q 021071 9 DRIKGPWSPEEDEALQQLVQKHGPRNWSLIS---KSIPGRSGKSCRLRWCNQLS 59 (317)
Q Consensus 9 ~~~KG~WT~EED~~L~~lV~kyG~~nW~~IA---~~lp~Rs~kqCr~Rw~n~L~ 59 (317)
.+.+.+||+|||+.|++.|++||. +|..|+ ..+++|+..++++||.++.+
T Consensus 5 ~~~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~~RT~VdLKdk~r~L~k 57 (62)
T 1x58_A 5 SSGRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQKGRRAVDLAHKYHRLIS 57 (62)
T ss_dssp CCCSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCTTCCHHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCccCcccchHHHHHHHHHh
Confidence 457889999999999999999996 899999 46789999999999998654
No 60
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=98.87 E-value=1.7e-09 Score=86.32 Aligned_cols=64 Identities=14% Similarity=0.199 Sum_probs=56.3
Q ss_pred ccccccccccCCCcccCCCCChHHHHHHHHHHHHcCCChhhhhhhc-----CCCCHHHHHHHHHHHHhhhhcc
Q 021071 48 KSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLL-----NGRTDNAIKNHWNSTLKRKCSS 115 (317)
Q Consensus 48 kqCr~Rw~n~L~p~ikr~~WT~EED~~Li~lv~k~G~kWs~IA~~l-----pgRT~~q~KnRw~~~lkrk~~~ 115 (317)
.=+.++|.++|.+ .+||.||+..|++|+.+||.+|..|+.++ ++||..+||+||..+.++.+..
T Consensus 18 ~yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~ 86 (93)
T 3hm5_A 18 VYSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANV 86 (93)
T ss_dssp CCCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 3468899999965 89999999999999999999999999998 5899999999998877765443
No 61
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.86 E-value=2.7e-09 Score=81.33 Aligned_cols=51 Identities=20% Similarity=0.337 Sum_probs=45.2
Q ss_pred cccCCCCChHHHHHHHHHHHHcC----CChhhhhhhcCCCCHHHHHHHHHHHHhhh
Q 021071 61 QVEHRAFTPEEDEMIIRAHARFG----NKWATIARLLNGRTDNAIKNHWNSTLKRK 112 (317)
Q Consensus 61 ~ikr~~WT~EED~~Li~lv~k~G----~kWs~IA~~lpgRT~~q~KnRw~~~lkrk 112 (317)
..+.+.||.|||++|.+++++|+ ++|.+||..+ |||..+|++||+.+.+..
T Consensus 5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d~ 59 (72)
T 2cqq_A 5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDSV 59 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHhc
Confidence 34578999999999999999997 5699999998 999999999998876653
No 62
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.85 E-value=1.4e-09 Score=79.99 Aligned_cols=49 Identities=20% Similarity=0.402 Sum_probs=44.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCcccccccccccC
Q 021071 9 DRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQL 58 (317)
Q Consensus 9 ~~~KG~WT~EED~~L~~lV~kyG~~nW~~IA~~lp~Rs~kqCr~Rw~n~L 58 (317)
+...++||+|||+++.+++.+|| ++|..||..|++|+..||..+|....
T Consensus 9 r~~~~~WT~eE~~~F~~~~~~~g-k~w~~Ia~~l~~rt~~~~v~~Yy~~K 57 (61)
T 2eqr_A 9 RQFMNVWTDHEKEIFKDKFIQHP-KNFGLIASYLERKSVPDCVLYYYLTK 57 (61)
T ss_dssp CSCCCSCCHHHHHHHHHHHHHST-TCHHHHHHHCTTSCHHHHHHHHHHHT
T ss_pred cccCCCCCHHHHHHHHHHHHHhC-CCHHHHHHHcCCCCHHHHHHHHHHhc
Confidence 45667999999999999999999 68999999999999999999996544
No 63
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.81 E-value=4.2e-09 Score=96.02 Aligned_cols=49 Identities=18% Similarity=0.400 Sum_probs=45.5
Q ss_pred cCCCCChHHHHHHHHHHHHcCCChhhhhhhcCCCCHHHHHHHHHHHHhh
Q 021071 63 EHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKR 111 (317)
Q Consensus 63 kr~~WT~EED~~Li~lv~k~G~kWs~IA~~lpgRT~~q~KnRw~~~lkr 111 (317)
....||+||++++++++.+||++|..||+.|++||..|||++|+.+.++
T Consensus 132 ~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 132 CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp CCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred cCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 4679999999999999999999999999999999999999999866655
No 64
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=98.76 E-value=4.3e-09 Score=105.30 Aligned_cols=46 Identities=17% Similarity=0.405 Sum_probs=42.2
Q ss_pred CCCChHHHHHHHHHHHHcCCChhhhhhhcCCCCHHHHHHHHHHHHh
Q 021071 65 RAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLK 110 (317)
Q Consensus 65 ~~WT~EED~~Li~lv~k~G~kWs~IA~~lpgRT~~q~KnRw~~~lk 110 (317)
..||.||.+++++++.+||.+|..||+.+..||..|||++|..+.+
T Consensus 381 ~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~kk 426 (482)
T 2xag_B 381 ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRR 426 (482)
T ss_dssp SCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 4899999999999999999999999999999999999999964433
No 65
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.58 E-value=1.5e-08 Score=77.26 Aligned_cols=49 Identities=20% Similarity=0.317 Sum_probs=43.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhC---CCChHHHhhhCCCCCcccccccccccC
Q 021071 9 DRIKGPWSPEEDEALQQLVQKHG---PRNWSLISKSIPGRSGKSCRLRWCNQL 58 (317)
Q Consensus 9 ~~~KG~WT~EED~~L~~lV~kyG---~~nW~~IA~~lp~Rs~kqCr~Rw~n~L 58 (317)
...++.||.|||++|.+++.+|+ +..|.+||..+ ||+.++|+.||+.+.
T Consensus 5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~ 56 (72)
T 2cqq_A 5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLK 56 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHH
Confidence 44577899999999999999997 34599999998 999999999998754
No 66
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.55 E-value=6e-08 Score=74.11 Aligned_cols=50 Identities=14% Similarity=0.283 Sum_probs=43.8
Q ss_pred cCCCCChHHHHHHHHHHHHcCC----ChhhhhhhcCCCCHHHHHHHHHHHHhhh
Q 021071 63 EHRAFTPEEDEMIIRAHARFGN----KWATIARLLNGRTDNAIKNHWNSTLKRK 112 (317)
Q Consensus 63 kr~~WT~EED~~Li~lv~k~G~----kWs~IA~~lpgRT~~q~KnRw~~~lkrk 112 (317)
....||.+|+++|.++++.|+. +|.+||..++|||..+|+.||..+++.+
T Consensus 7 ~~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~~~ 60 (73)
T 1wgx_A 7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRGK 60 (73)
T ss_dssp SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSSS
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHhcc
Confidence 3468999999999999999984 5999999999999999999997765443
No 67
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.50 E-value=8.4e-08 Score=70.32 Aligned_cols=47 Identities=23% Similarity=0.424 Sum_probs=42.8
Q ss_pred CCCCChHHHHHHHHHHHHc--------CCC-hhhhhh-hcCCCCHHHHHHHHHHHHh
Q 021071 64 HRAFTPEEDEMIIRAHARF--------GNK-WATIAR-LLNGRTDNAIKNHWNSTLK 110 (317)
Q Consensus 64 r~~WT~EED~~Li~lv~k~--------G~k-Ws~IA~-~lpgRT~~q~KnRw~~~lk 110 (317)
|.+||.|||..|++.|++| |++ |..+++ .++++|-.++|+||.+.|+
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence 5689999999999999999 655 999999 7999999999999988764
No 68
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.50 E-value=3.5e-08 Score=72.35 Aligned_cols=48 Identities=23% Similarity=0.399 Sum_probs=43.3
Q ss_pred CCCCCHHHHHHHHHHHHHh--------CCCChHHHhh-hCCCCCcccccccccccCC
Q 021071 12 KGPWSPEEDEALQQLVQKH--------GPRNWSLISK-SIPGRSGKSCRLRWCNQLS 59 (317)
Q Consensus 12 KG~WT~EED~~L~~lV~ky--------G~~nW~~IA~-~lp~Rs~kqCr~Rw~n~L~ 59 (317)
|.+||+|||++|+++|.+| |..-|..+++ .++++|-.+||+||.++|.
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence 5689999999999999999 5455999999 7999999999999998874
No 69
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.45 E-value=6.9e-08 Score=88.05 Aligned_cols=50 Identities=24% Similarity=0.346 Sum_probs=45.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCcccccccccccCC
Q 021071 9 DRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLS 59 (317)
Q Consensus 9 ~~~KG~WT~EED~~L~~lV~kyG~~nW~~IA~~lp~Rs~kqCr~Rw~n~L~ 59 (317)
.+..++||+||++++++++.+|| ++|..||+.|++||..||+.+|.++.+
T Consensus 130 ~k~s~~WTeEE~~lFleAl~kYG-KDW~~IAk~VgTKT~~QcKnfY~~~kK 179 (235)
T 2iw5_B 130 QKCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIGNKSVVQVKNFFVNYRR 179 (235)
T ss_dssp CCCCSSCCHHHHHHHHHHHHHHS-SCHHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred CccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 35667999999999999999999 789999999999999999999988763
No 70
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.36 E-value=1.9e-07 Score=71.34 Aligned_cols=48 Identities=17% Similarity=0.347 Sum_probs=43.0
Q ss_pred CCCCHHHHHHHHHHHHHhCC---CChHHHhhhCCCCCcccccccccccCCC
Q 021071 13 GPWSPEEDEALQQLVQKHGP---RNWSLISKSIPGRSGKSCRLRWCNQLSP 60 (317)
Q Consensus 13 G~WT~EED~~L~~lV~kyG~---~nW~~IA~~lp~Rs~kqCr~Rw~n~L~p 60 (317)
..||.+|+++|.+++..|+. .+|..||..|++|+..+|+.||..++..
T Consensus 9 ~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~~ 59 (73)
T 1wgx_A 9 KEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRG 59 (73)
T ss_dssp SCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSS
T ss_pred CCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHhc
Confidence 57999999999999999964 4699999999999999999999887643
No 71
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=98.22 E-value=4.2e-06 Score=79.51 Aligned_cols=100 Identities=14% Similarity=0.235 Sum_probs=80.5
Q ss_pred CCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCccccccccccc------C----------------------------
Q 021071 13 GPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQ------L---------------------------- 58 (317)
Q Consensus 13 G~WT~EED~~L~~lV~kyG~~nW~~IA~~lp~Rs~kqCr~Rw~n~------L---------------------------- 58 (317)
+.||..|...++.++.+||..+|..||..|.+++...++..+.-. |
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~l~ 190 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKALD 190 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 469999999999999999999999999999999987764322100 0
Q ss_pred ----------------CCcccCCCCChHHHHHHHHHHHHcCC----Chhhhhh------------hcCCCCHHHHHHHHH
Q 021071 59 ----------------SPQVEHRAFTPEEDEMIIRAHARFGN----KWATIAR------------LLNGRTDNAIKNHWN 106 (317)
Q Consensus 59 ----------------~p~ikr~~WT~EED~~Li~lv~k~G~----kWs~IA~------------~lpgRT~~q~KnRw~ 106 (317)
-+..+...||++||..||-++.+||- .|..|.. ++..||+.+|..|.+
T Consensus 191 ~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc~ 270 (304)
T 1ofc_X 191 QKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCN 270 (304)
T ss_dssp HHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHH
T ss_pred HHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHH
Confidence 01224568999999999999999995 4999972 456799999999999
Q ss_pred HHHhhh
Q 021071 107 STLKRK 112 (317)
Q Consensus 107 ~~lkrk 112 (317)
.+++-.
T Consensus 271 tLi~~i 276 (304)
T 1ofc_X 271 TLITLI 276 (304)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888654
No 72
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.18 E-value=2.9e-06 Score=62.68 Aligned_cols=47 Identities=13% Similarity=0.340 Sum_probs=43.4
Q ss_pred CcccCCCCChHHHHHHHHHHHHcCCChhhhhh-hcCCCCHHHHHHHHH
Q 021071 60 PQVEHRAFTPEEDEMIIRAHARFGNKWATIAR-LLNGRTDNAIKNHWN 106 (317)
Q Consensus 60 p~ikr~~WT~EED~~Li~lv~k~G~kWs~IA~-~lpgRT~~q~KnRw~ 106 (317)
|.++...||+||-++..+++.+||.+|..|++ .|++||..+|...|.
T Consensus 5 p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY 52 (63)
T 2yqk_A 5 SSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYY 52 (63)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHH
T ss_pred CCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHh
Confidence 56677899999999999999999999999999 599999999998885
No 73
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=98.07 E-value=4.5e-06 Score=66.02 Aligned_cols=48 Identities=17% Similarity=0.309 Sum_probs=43.5
Q ss_pred CCCChHHHHHHHHHHHHcCC---ChhhhhhhcCCCCHHHHHHHHHHHHhhh
Q 021071 65 RAFTPEEDEMIIRAHARFGN---KWATIARLLNGRTDNAIKNHWNSTLKRK 112 (317)
Q Consensus 65 ~~WT~EED~~Li~lv~k~G~---kWs~IA~~lpgRT~~q~KnRw~~~lkrk 112 (317)
--||.|||..||..+++-|. .|+.||+.|.+|+.++|++||+.+++-.
T Consensus 34 vlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~Lf 84 (95)
T 1ug2_A 34 VLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLF 84 (95)
T ss_dssp SSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHH
T ss_pred EEeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence 36999999999999999996 6999999999999999999998877644
No 74
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=98.06 E-value=1.2e-06 Score=66.75 Aligned_cols=42 Identities=24% Similarity=0.452 Sum_probs=38.3
Q ss_pred CCCCChHHHHHHHHHHHHcCC----ChhhhhhhcCCCCHHHHHHHH
Q 021071 64 HRAFTPEEDEMIIRAHARFGN----KWATIARLLNGRTDNAIKNHW 105 (317)
Q Consensus 64 r~~WT~EED~~Li~lv~k~G~----kWs~IA~~lpgRT~~q~KnRw 105 (317)
...||.+|+++|.++.++|+. +|.+||..+||||..+|+.+|
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY 65 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHY 65 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGG
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHH
Confidence 457999999999999999985 699999999999999999998
No 75
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=97.12 E-value=1.6e-06 Score=65.18 Aligned_cols=44 Identities=20% Similarity=0.406 Sum_probs=40.9
Q ss_pred CCChHHHHHHHHHHHHcCC---ChhhhhhhcCCCCHHHHHHHHHHHHh
Q 021071 66 AFTPEEDEMIIRAHARFGN---KWATIARLLNGRTDNAIKNHWNSTLK 110 (317)
Q Consensus 66 ~WT~EED~~Li~lv~k~G~---kWs~IA~~lpgRT~~q~KnRw~~~lk 110 (317)
-||.|||..|+..+++-|. .|+.||..| +|+++||++||..+++
T Consensus 16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMK 62 (70)
Confidence 6999999999999999996 699999999 9999999999987764
No 76
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.85 E-value=1.2e-05 Score=59.33 Aligned_cols=49 Identities=16% Similarity=0.275 Sum_probs=43.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHhh-hCCCCCcccccccccc
Q 021071 7 EVDRIKGPWSPEEDEALQQLVQKHGPRNWSLISK-SIPGRSGKSCRLRWCN 56 (317)
Q Consensus 7 ~~~~~KG~WT~EED~~L~~lV~kyG~~nW~~IA~-~lp~Rs~kqCr~Rw~n 56 (317)
.+......||+||-+++.+++.+|| ++|..|++ .|++|+..+|...|..
T Consensus 4 ~p~~~~~~WT~eE~~~Fe~~l~~yG-Kdf~~I~~~~v~~Kt~~~~v~fYY~ 53 (63)
T 2yqk_A 4 GSSGIEKCWTEDEVKRFVKGLRQYG-KNFFRIRKELLPNKETGELITFYYY 53 (63)
T ss_dssp CCCCCCCSCCHHHHHHHHHHHHHTC-SCHHHHHHHSCTTSCHHHHHHHHHH
T ss_pred CCCcCCCCcCHHHHHHHHHHHHHhC-ccHHHHHHHHcCCCcHHHHHHHHhc
Confidence 3566778999999999999999999 58999999 4899999999887754
No 77
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.81 E-value=3.2e-06 Score=64.48 Aligned_cols=44 Identities=16% Similarity=0.410 Sum_probs=38.6
Q ss_pred CCCCCHHHHHHHHHHHHHhCC---CChHHHhhhCCCCCccccccccc
Q 021071 12 KGPWSPEEDEALQQLVQKHGP---RNWSLISKSIPGRSGKSCRLRWC 55 (317)
Q Consensus 12 KG~WT~EED~~L~~lV~kyG~---~nW~~IA~~lp~Rs~kqCr~Rw~ 55 (317)
...||.||+++|..++..|.. ..|.+||..||||+..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 347999999999999999964 25999999999999999999984
No 78
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=97.81 E-value=3.7e-06 Score=67.03 Aligned_cols=46 Identities=20% Similarity=0.359 Sum_probs=41.6
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCChHHHhhhC-----CCCCcccccccccccC
Q 021071 12 KGPWSPEEDEALQQLVQKHGPRNWSLISKSI-----PGRSGKSCRLRWCNQL 58 (317)
Q Consensus 12 KG~WT~EED~~L~~lV~kyG~~nW~~IA~~l-----p~Rs~kqCr~Rw~n~L 58 (317)
..+||.||++.|++++++|+.+ |..|+.++ ++||..++++||..+.
T Consensus 30 ~~~WTkEETd~Lf~L~~~fdlR-W~vI~DRy~~~~~~~Rt~EdLK~RyY~v~ 80 (93)
T 3hm5_A 30 DDAWTKAETDHLFDLSRRFDLR-FVVIHDRYDHQQFKKRSVEDLKERYYHIC 80 (93)
T ss_dssp BTTBCHHHHHHHHHHHHHTTTC-HHHHHHHSCTTTSCCCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCC-eeeehhhhccCCCCCCCHHHHHHHHHHHH
Confidence 3789999999999999999976 99999999 4899999999997654
No 79
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=97.77 E-value=4.1e-05 Score=60.91 Aligned_cols=51 Identities=16% Similarity=0.295 Sum_probs=45.7
Q ss_pred CCCCChHHHHHHHHHHHHcCCChhhhhhhcC-----CCCHHHHHHHHHHHHhhhhc
Q 021071 64 HRAFTPEEDEMIIRAHARFGNKWATIARLLN-----GRTDNAIKNHWNSTLKRKCS 114 (317)
Q Consensus 64 r~~WT~EED~~Li~lv~k~G~kWs~IA~~lp-----gRT~~q~KnRw~~~lkrk~~ 114 (317)
...||.||...|++++++|+-+|..|+..+. +||-.++|.||..+.++.+.
T Consensus 30 ~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~ 85 (93)
T 4iej_A 30 DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLAN 85 (93)
T ss_dssp BTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 3689999999999999999999999999874 79999999999888877654
No 80
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.76 E-value=4.7e-05 Score=57.35 Aligned_cols=44 Identities=14% Similarity=0.277 Sum_probs=40.8
Q ss_pred cCCCCChHHHHHHHHHHHHcCCChhhhhh-hcCCCCHHHHHHHHH
Q 021071 63 EHRAFTPEEDEMIIRAHARFGNKWATIAR-LLNGRTDNAIKNHWN 106 (317)
Q Consensus 63 kr~~WT~EED~~Li~lv~k~G~kWs~IA~-~lpgRT~~q~KnRw~ 106 (317)
....||+||-++..+++.+||.+|..|++ .|++||..+|...|.
T Consensus 7 ~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY 51 (70)
T 2crg_A 7 GMEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYY 51 (70)
T ss_dssp SSCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHH
Confidence 34689999999999999999999999999 599999999999885
No 81
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.69 E-value=4.8e-05 Score=60.44 Aligned_cols=44 Identities=14% Similarity=0.156 Sum_probs=41.2
Q ss_pred CCCCChHHHHHHHHHHHHcCCChhhhhhhcCCCCHHHHHHHHHH
Q 021071 64 HRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNS 107 (317)
Q Consensus 64 r~~WT~EED~~Li~lv~k~G~kWs~IA~~lpgRT~~q~KnRw~~ 107 (317)
...||+||.+++.++..+||.+|..|+..|++||..+|-..|..
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~ 86 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYL 86 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhc
Confidence 46899999999999999999999999999999999999998843
No 82
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.60 E-value=2.5e-05 Score=78.24 Aligned_cols=48 Identities=25% Similarity=0.356 Sum_probs=43.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCcccccccccccC
Q 021071 10 RIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQL 58 (317)
Q Consensus 10 ~~KG~WT~EED~~L~~lV~kyG~~nW~~IA~~lp~Rs~kqCr~Rw~n~L 58 (317)
+...+||.||.+++++++.+|| ++|..||++|.+|+..||+.+|.++-
T Consensus 378 ~~~~~WT~eE~~~f~~al~~yG-kdw~~IA~~VgTKT~~Qvk~fy~~~k 425 (482)
T 2xag_B 378 KCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIGNKSVVQVKNFFVNYR 425 (482)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHT-TCHHHHHHHHSSCCHHHHHHHHHHTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 4567999999999999999999 68999999999999999999987643
No 83
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.47 E-value=6.4e-05 Score=59.71 Aligned_cols=44 Identities=23% Similarity=0.469 Sum_probs=40.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCcccccccccc
Q 021071 12 KGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCN 56 (317)
Q Consensus 12 KG~WT~EED~~L~~lV~kyG~~nW~~IA~~lp~Rs~kqCr~Rw~n 56 (317)
...||+||.+++.+.+..|| ++|.+|+..|++|+..+|.+.|..
T Consensus 43 ~~~WT~eE~~~F~~~~~~~g-K~F~~Ia~~l~~Kt~~~cV~~YY~ 86 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHP-KNFGLIASFLERKTVAECVLYYYL 86 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHST-TCHHHHHHTCTTCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcC-CCHHHHHHHcCCCCHHHHHHHHhc
Confidence 46799999999999999999 679999999999999999887743
No 84
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.39 E-value=0.00013 Score=54.86 Aligned_cols=46 Identities=20% Similarity=0.250 Sum_probs=40.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCChHHHhh-hCCCCCcccccccccc
Q 021071 10 RIKGPWSPEEDEALQQLVQKHGPRNWSLISK-SIPGRSGKSCRLRWCN 56 (317)
Q Consensus 10 ~~KG~WT~EED~~L~~lV~kyG~~nW~~IA~-~lp~Rs~kqCr~Rw~n 56 (317)
.....||+||-+++.+++.+|| +||..|++ .|++|+..+|...|..
T Consensus 6 ~~~~~WT~eE~~~Fe~~l~~yG-Kdf~~I~~~~v~~Kt~~~~v~fYY~ 52 (70)
T 2crg_A 6 SGMEEWSASEACLFEEALEKYG-KDFNDIRQDFLPWKSLTSIIEYYYM 52 (70)
T ss_dssp CSSCCCCHHHHHHHHHHHHHTC-SCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHhC-ccHHHHHHHHcCCCCHHHHHHHHHh
Confidence 3456899999999999999999 58999999 5899999999887753
No 85
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=97.30 E-value=0.00044 Score=61.22 Aligned_cols=102 Identities=15% Similarity=0.144 Sum_probs=69.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHhC--CCChHHHhhh--CCCCCccccccccccc----------------------------
Q 021071 10 RIKGPWSPEEDEALQQLVQKHG--PRNWSLISKS--IPGRSGKSCRLRWCNQ---------------------------- 57 (317)
Q Consensus 10 ~~KG~WT~EED~~L~~lV~kyG--~~nW~~IA~~--lp~Rs~kqCr~Rw~n~---------------------------- 57 (317)
.....||..|-..|+.++.+|| ...|..|+.. +.+|+...+..-+..+
T Consensus 5 ~~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~c~~~~~~~~~~~~~~~~~~~~~~~~ 84 (211)
T 4b4c_A 5 ENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNGCIKALKDSSSGTERTGGRLGKVKGP 84 (211)
T ss_dssp ---CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHHHHHHHC-----------------CC
T ss_pred ccCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccch
Confidence 3456799999999999999999 4569999874 5677664433211000
Q ss_pred -----------------------C----------------C----CcccCCCCChHHHHHHHHHHHHcC-CChhhhhh--
Q 021071 58 -----------------------L----------------S----PQVEHRAFTPEEDEMIIRAHARFG-NKWATIAR-- 91 (317)
Q Consensus 58 -----------------------L----------------~----p~ikr~~WT~EED~~Li~lv~k~G-~kWs~IA~-- 91 (317)
| . +......||.+||..|+..+.+|| ++|..|-.
T Consensus 85 ~~~~~~v~~nA~~il~R~~~l~~L~~~v~~~~~~~~~~~i~~~~~~~~~~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~ 164 (211)
T 4b4c_A 85 TFRISGVQVNAKLVISHEEELIPLHKSIPSDPEERKQYTIPCHTKAAHFDIDWGKEDDSNLLIGIYEYGYGSWEMIKMDP 164 (211)
T ss_dssp EEEETTEEEEHHHHHHHHHHHHHHHHHSCSSHHHHHTCCCCSCCCCCCSSSCCCHHHHHHHHHHHHHHCTTCHHHHHHCS
T ss_pred hhhhcccchhHHHHHHhHHHHHHHHHHHHhchhhHHHcCcCCCCCCCCCCCCccHHHHHHHHHHHHHHCcCcHHHHHhCh
Confidence 0 0 001123599999999999999999 88999986
Q ss_pred hc--C----------CCCHHHHHHHHHHHHhh
Q 021071 92 LL--N----------GRTDNAIKNHWNSTLKR 111 (317)
Q Consensus 92 ~l--p----------gRT~~q~KnRw~~~lkr 111 (317)
.| . .++...|..|...+|+-
T Consensus 165 ~l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~~ 196 (211)
T 4b4c_A 165 DLSLTHKILPDDPDKKPQAKQLQTRADYLIKL 196 (211)
T ss_dssp SSSCTTTSSCSSTTSSCCHHHHHHHHHHHHHH
T ss_pred hcCccccccccccccCCChHHHHHHHHHHHHH
Confidence 22 1 24566799998777764
No 86
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=97.24 E-value=0.00069 Score=65.90 Aligned_cols=102 Identities=19% Similarity=0.286 Sum_probs=78.6
Q ss_pred CCCCHHHHHHHHHHHHHhCCCChHHHhhhCC-CCCccccc-------ccccc------cC--------------------
Q 021071 13 GPWSPEEDEALQQLVQKHGPRNWSLISKSIP-GRSGKSCR-------LRWCN------QL-------------------- 58 (317)
Q Consensus 13 G~WT~EED~~L~~lV~kyG~~nW~~IA~~lp-~Rs~kqCr-------~Rw~n------~L-------------------- 58 (317)
+.||.-|=..++.++.+||..+...||..|. +++...++ .||.. ++
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~~~L 203 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQEAL 203 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999999989999999996 88876654 12211 00
Q ss_pred --------C----------Cc-ccCCCCChHHHHHHHHHHHHcCC----Chhhhhhh------------cCCCCHHHHHH
Q 021071 59 --------S----------PQ-VEHRAFTPEEDEMIIRAHARFGN----KWATIARL------------LNGRTDNAIKN 103 (317)
Q Consensus 59 --------~----------p~-ikr~~WT~EED~~Li~lv~k~G~----kWs~IA~~------------lpgRT~~q~Kn 103 (317)
+ +. .+...||.+||..||-++.+||- .|..|-.. |..||+..|..
T Consensus 204 ~~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~r 283 (374)
T 2y9y_A 204 RRKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELAR 283 (374)
T ss_dssp HHHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHH
T ss_pred HHHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHH
Confidence 0 11 14567999999999999999994 59999442 45799999999
Q ss_pred HHHHHHhhhhc
Q 021071 104 HWNSTLKRKCS 114 (317)
Q Consensus 104 Rw~~~lkrk~~ 114 (317)
|.+.+++-...
T Consensus 284 Rc~tLi~~IeK 294 (374)
T 2y9y_A 284 RGNTLLQCLEK 294 (374)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 99988865433
No 87
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=97.04 E-value=0.00011 Score=56.87 Aligned_cols=49 Identities=24% Similarity=0.451 Sum_probs=40.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC------C---ChHHHhhhC----CCCCcccccccccccC
Q 021071 10 RIKGPWSPEEDEALQQLVQKHGP------R---NWSLISKSI----PGRSGKSCRLRWCNQL 58 (317)
Q Consensus 10 ~~KG~WT~EED~~L~~lV~kyG~------~---nW~~IA~~l----p~Rs~kqCr~Rw~n~L 58 (317)
.+...||.+|-.+|+++...... . .|..||..| -.|++.||+.+|.|+.
T Consensus 2 kR~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~ 63 (86)
T 2ebi_A 2 KRAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLL 63 (86)
T ss_dssp CCSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 34678999999999999976411 1 399999988 4899999999998864
No 88
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=95.94 E-value=0.00015 Score=54.45 Aligned_cols=45 Identities=16% Similarity=0.454 Sum_probs=40.4
Q ss_pred CCCHHHHHHHHHHHHHhCC--CChHHHhhhCCCCCcccccccccccCC
Q 021071 14 PWSPEEDEALQQLVQKHGP--RNWSLISKSIPGRSGKSCRLRWCNQLS 59 (317)
Q Consensus 14 ~WT~EED~~L~~lV~kyG~--~nW~~IA~~lp~Rs~kqCr~Rw~n~L~ 59 (317)
.||.|||..|+..+++.|+ .-|..||+.+ +|+..|+.+||..+++
T Consensus 16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMK 62 (70)
Confidence 5999999999999999986 2499999999 9999999999987653
No 89
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=96.87 E-value=0.00065 Score=52.40 Aligned_cols=48 Identities=17% Similarity=0.433 Sum_probs=38.8
Q ss_pred CCCCChHHHHHHHHHHHHcC----------CChhhhhhhcC----CCCHHHHHHHHHHHHhh
Q 021071 64 HRAFTPEEDEMIIRAHARFG----------NKWATIARLLN----GRTDNAIKNHWNSTLKR 111 (317)
Q Consensus 64 r~~WT~EED~~Li~lv~k~G----------~kWs~IA~~lp----gRT~~q~KnRw~~~lkr 111 (317)
...||.+|-.+||.+...+. ..|..||..|. .||+.||+++|.++.+.
T Consensus 4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~ 65 (86)
T 2ebi_A 4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKE 65 (86)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 46799999999999986522 13999999864 69999999999766655
No 90
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.77 E-value=0.0008 Score=53.22 Aligned_cols=44 Identities=20% Similarity=0.455 Sum_probs=40.0
Q ss_pred CCCHHHHHHHHHHHHHhCC--CChHHHhhhCCCCCccccccccccc
Q 021071 14 PWSPEEDEALQQLVQKHGP--RNWSLISKSIPGRSGKSCRLRWCNQ 57 (317)
Q Consensus 14 ~WT~EED~~L~~lV~kyG~--~nW~~IA~~lp~Rs~kqCr~Rw~n~ 57 (317)
-||.|||..|+...++.|. ..|..||+.|.+|+..|+.+||+.+
T Consensus 35 lWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~L 80 (95)
T 1ug2_A 35 LWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFREL 80 (95)
T ss_dssp SSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHH
T ss_pred EeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHH
Confidence 5999999999999999986 3599999999999999999999763
No 91
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=96.08 E-value=0.0031 Score=50.07 Aligned_cols=46 Identities=20% Similarity=0.358 Sum_probs=40.3
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCChHHHhhhCC-----CCCcccccccccccC
Q 021071 12 KGPWSPEEDEALQQLVQKHGPRNWSLISKSIP-----GRSGKSCRLRWCNQL 58 (317)
Q Consensus 12 KG~WT~EED~~L~~lV~kyG~~nW~~IA~~lp-----~Rs~kqCr~Rw~n~L 58 (317)
...||.||.+.|.+++++|+-+ |..|+.... .|+..++++||..+.
T Consensus 30 ~~~WT~eETd~LfdLc~~fdlR-w~vI~DRy~~~~~~~RtvEdLK~RYY~V~ 80 (93)
T 4iej_A 30 DDAWTKAETDHLFDLSRRFDLR-FVVIHDRYDHQQFKKRSVEDLKERYYHIC 80 (93)
T ss_dssp BTTBCHHHHHHHHHHHHHTTTC-HHHHHHHCCTTTSCCCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCC-eEEEeeccccCCCCCCCHHHHHHHHHHHH
Confidence 3679999999999999999966 999999873 799999999997654
No 92
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=94.79 E-value=0.072 Score=39.42 Aligned_cols=47 Identities=17% Similarity=0.180 Sum_probs=40.4
Q ss_pred cCCCCChHHHHHHHHHHHHcCCC---hhhhhhhc--CCCCHHHHHHHHHHHH
Q 021071 63 EHRAFTPEEDEMIIRAHARFGNK---WATIARLL--NGRTDNAIKNHWNSTL 109 (317)
Q Consensus 63 kr~~WT~EED~~Li~lv~k~G~k---Ws~IA~~l--pgRT~~q~KnRw~~~l 109 (317)
.+-.||+|..+.+++++.++|.. |..|.+.| +|.|..+|+.|.+++.
T Consensus 6 ~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR 57 (64)
T 1irz_A 6 PRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFR 57 (64)
T ss_dssp SSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 46689999999999999999955 78999886 6899999999986554
No 93
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=94.35 E-value=0.056 Score=51.23 Aligned_cols=51 Identities=20% Similarity=0.403 Sum_probs=42.7
Q ss_pred CCCCChHHHHHHHHHHHHcCC-ChhhhhhhcCCCCHHHHHHHHHHHHhhhhcc
Q 021071 64 HRAFTPEEDEMIIRAHARFGN-KWATIARLLNGRTDNAIKNHWNSTLKRKCSS 115 (317)
Q Consensus 64 r~~WT~EED~~Li~lv~k~G~-kWs~IA~~lpgRT~~q~KnRw~~~lkrk~~~ 115 (317)
.+.||..|...++.++.+||. +|..||..+.|+|...|+.++. .|=.++..
T Consensus 110 F~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~-vFw~ry~e 161 (304)
T 1ofc_X 110 FTAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNA-VFWERCTE 161 (304)
T ss_dssp CTTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHH-HHHHHGGG
T ss_pred hcccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHH-HHHHhHHH
Confidence 357999999999999999995 6999999999999999977664 44455543
No 94
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=92.44 E-value=0.14 Score=45.00 Aligned_cols=53 Identities=19% Similarity=0.375 Sum_probs=42.0
Q ss_pred cCCCCChHHHHHHHHHHHHcC---CChhhhhhh--cCCCCHHHHHHHHHHHHhhhhccc
Q 021071 63 EHRAFTPEEDEMIIRAHARFG---NKWATIARL--LNGRTDNAIKNHWNSTLKRKCSSM 116 (317)
Q Consensus 63 kr~~WT~EED~~Li~lv~k~G---~kWs~IA~~--lpgRT~~q~KnRw~~~lkrk~~~~ 116 (317)
....||..|-..|++++.+|| .+|..|+.. |.+||...|+..+.. +-..|...
T Consensus 6 ~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~-f~~~c~~~ 63 (211)
T 4b4c_A 6 NIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGEL-VHNGCIKA 63 (211)
T ss_dssp --CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHH-HHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHH-HHHHHHHH
Confidence 457899999999999999999 579999964 889999999987654 44455443
No 95
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=92.01 E-value=0.1 Score=38.53 Aligned_cols=48 Identities=10% Similarity=0.082 Sum_probs=38.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCC--hHHHhhhC--CCCCcccccccccc
Q 021071 9 DRIKGPWSPEEDEALQQLVQKHGPRN--WSLISKSI--PGRSGKSCRLRWCN 56 (317)
Q Consensus 9 ~~~KG~WT~EED~~L~~lV~kyG~~n--W~~IA~~l--p~Rs~kqCr~Rw~n 56 (317)
++.+-.||+|..+.++++|.+.|... +..|.+.| ++.|..++..|.+.
T Consensus 4 ~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQK 55 (64)
T 1irz_A 4 KKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQK 55 (64)
T ss_dssp CCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHH
T ss_pred CCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHH
Confidence 45566899999999999999999432 78998887 57788877766554
No 96
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=90.10 E-value=0.21 Score=46.56 Aligned_cols=27 Identities=41% Similarity=0.605 Sum_probs=25.6
Q ss_pred CCCHHHHHHHHHHHHHhCCCChHHHhh
Q 021071 14 PWSPEEDEALQQLVQKHGPRNWSLISK 40 (317)
Q Consensus 14 ~WT~EED~~L~~lV~kyG~~nW~~IA~ 40 (317)
.|+.+||..|+..|.+||-++|..|..
T Consensus 170 ~W~~~dD~~LLvGIykyGyG~We~Ir~ 196 (270)
T 2xb0_X 170 NWTKEEDEKLLIGVFKYGYGSWTQIRD 196 (270)
T ss_dssp CCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence 499999999999999999999999975
No 97
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=78.30 E-value=3.4 Score=38.37 Aligned_cols=47 Identities=11% Similarity=0.178 Sum_probs=41.1
Q ss_pred CCCCChHHHHHHHHHHHHcC---CChhhhhh--hcCCCCHHHHHHHHHHHHh
Q 021071 64 HRAFTPEEDEMIIRAHARFG---NKWATIAR--LLNGRTDNAIKNHWNSTLK 110 (317)
Q Consensus 64 r~~WT~EED~~Li~lv~k~G---~kWs~IA~--~lpgRT~~q~KnRw~~~lk 110 (317)
++.||..|-..|++++.+|| .+|..|+. .|+.++...++.-|+.++.
T Consensus 3 ~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~~i~~~~~~li~ 54 (270)
T 2xb0_X 3 LGSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYGETYDEMME 54 (270)
T ss_dssp TCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHHHHHHHHHHHHH
Confidence 57899999999999999999 47999986 5889999999988876664
No 98
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=75.08 E-value=3.9 Score=39.68 Aligned_cols=50 Identities=18% Similarity=0.302 Sum_probs=42.3
Q ss_pred CCCChHHHHHHHHHHHHcCC-ChhhhhhhcC-CCCHHHHHHHHHHHHhhhhcc
Q 021071 65 RAFTPEEDEMIIRAHARFGN-KWATIARLLN-GRTDNAIKNHWNSTLKRKCSS 115 (317)
Q Consensus 65 ~~WT~EED~~Li~lv~k~G~-kWs~IA~~lp-gRT~~q~KnRw~~~lkrk~~~ 115 (317)
+.||.-|=..++.++.+||. +-..||..|. |+|...|+ +|...|=.++..
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~-~Y~~vFw~Ry~E 175 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVR-AYAKAFWSNIER 175 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHH-HHHHHHHHTCSS
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHH-HHHHHHHHhhhh
Confidence 47999999999999999995 4999999997 99999999 555666666654
No 99
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=74.30 E-value=5.3 Score=27.68 Aligned_cols=43 Identities=14% Similarity=0.171 Sum_probs=33.3
Q ss_pred CChHHHHHHHHHHHHcCCChhhhhhhcCCCCHHHHHHHHHHHHhh
Q 021071 67 FTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKR 111 (317)
Q Consensus 67 WT~EED~~Li~lv~k~G~kWs~IA~~lpgRT~~q~KnRw~~~lkr 111 (317)
++ +.+..++.++...|-.+..||..+ |-+...|+.+....+++
T Consensus 16 L~-~~~r~il~l~~~~g~s~~eIA~~l-gis~~tv~~~~~ra~~~ 58 (70)
T 2o8x_A 16 LT-TDQREALLLTQLLGLSYADAAAVC-GCPVGTIRSRVARARDA 58 (70)
T ss_dssp SC-HHHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred CC-HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 44 455566667667889999999999 99999999988655544
No 100
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=69.94 E-value=7.5 Score=27.69 Aligned_cols=42 Identities=17% Similarity=0.314 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHH----cCCChhhhhhhcCCCCHHHHHHHHHHHHhhh
Q 021071 70 EEDEMIIRAHAR----FGNKWATIARLLNGRTDNAIKNHWNSTLKRK 112 (317)
Q Consensus 70 EED~~Li~lv~k----~G~kWs~IA~~lpgRT~~q~KnRw~~~lkrk 112 (317)
+.+..++.+..- .|..|..||..+ |-+...|+.+....+++-
T Consensus 13 ~~er~il~l~~~l~~~~~~s~~eIA~~l-~is~~tV~~~~~ra~~kL 58 (73)
T 1ku3_A 13 EREAMVLKMRKGLIDGREHTLEEVGAYF-GVTRERIRQIENKALRKL 58 (73)
T ss_dssp HHHHHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 444555555554 577899999999 999999999876665543
No 101
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=66.37 E-value=7.7 Score=27.22 Aligned_cols=42 Identities=10% Similarity=0.176 Sum_probs=30.9
Q ss_pred HHHHHHHHHHH----HcCCChhhhhhhcCCCCHHHHHHHHHHHHhhh
Q 021071 70 EEDEMIIRAHA----RFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 112 (317)
Q Consensus 70 EED~~Li~lv~----k~G~kWs~IA~~lpgRT~~q~KnRw~~~lkrk 112 (317)
+.+..++.+.. ..|..+..||..+ |-+...|+.+....+++-
T Consensus 8 ~~er~il~l~~~l~~~~g~s~~eIA~~l-gis~~tV~~~~~ra~~kL 53 (68)
T 2p7v_B 8 AREAKVLRMRFGIDMNTDYTLEEVGKQF-DVTRERIRQIEAKALRKL 53 (68)
T ss_dssp HHHHHHHHHHTTTTSSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHccCCCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 34445555544 3477899999999 999999999987666544
No 102
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=59.57 E-value=14 Score=27.45 Aligned_cols=41 Identities=22% Similarity=0.261 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHcCCChhhhhhhcCCCCHHHHHHHHHHHHhh
Q 021071 70 EEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKR 111 (317)
Q Consensus 70 EED~~Li~lv~k~G~kWs~IA~~lpgRT~~q~KnRw~~~lkr 111 (317)
+.+..++.++...|-.-..||..| |-+...|+.+....+++
T Consensus 40 ~~~r~vl~l~~~~g~s~~eIA~~l-gis~~tV~~~l~ra~~~ 80 (92)
T 3hug_A 40 AEHRAVIQRSYYRGWSTAQIATDL-GIAEGTVKSRLHYAVRA 80 (92)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 445566777667888999999999 99999999988655544
No 103
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=58.13 E-value=7.8 Score=31.03 Aligned_cols=37 Identities=16% Similarity=0.328 Sum_probs=29.4
Q ss_pred HHHHHHHcCC--------ChhhhhhhcCCCCHHHHHHHHHHHHhh
Q 021071 75 IIRAHARFGN--------KWATIARLLNGRTDNAIKNHWNSTLKR 111 (317)
Q Consensus 75 Li~lv~k~G~--------kWs~IA~~lpgRT~~q~KnRw~~~lkr 111 (317)
|..+|.+.|+ .|..||..|.--....+|.+|.++|-.
T Consensus 54 Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~Lr~~Y~k~L~~ 98 (116)
T 2li6_A 54 LYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLP 98 (116)
T ss_dssp HHHHHHHHTSHHHHHHTTCHHHHHHHHTSCCTTHHHHHHHHHHSH
T ss_pred HHHHHHHhcCHHHccccCcHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 7778888874 699999998544478999999887754
No 104
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=55.75 E-value=12 Score=32.33 Aligned_cols=31 Identities=32% Similarity=0.658 Sum_probs=23.4
Q ss_pred CCCCCCCCCHHHHHHHH--------HHHHHhCCCChHHHhhh
Q 021071 8 VDRIKGPWSPEEDEALQ--------QLVQKHGPRNWSLISKS 41 (317)
Q Consensus 8 ~~~~KG~WT~EED~~L~--------~lV~kyG~~nW~~IA~~ 41 (317)
+.-..|-||+|+|+.|. .+++++| |..|..+
T Consensus 110 P~N~pGIWT~eDDe~L~s~d~~dikrL~kKHG---~erie~R 148 (168)
T 3cz6_A 110 PPNVPGIWTHDDDESLKSNDQEQIRKLVKKHG---TGRMEMR 148 (168)
T ss_dssp CTTCTTCCCHHHHHHHHSCCHHHHHHHHHHHC---HHHHHHH
T ss_pred CCCCCCCCChhhHHHHHcCCHHHHHHHHHHhC---HHHHHHH
Confidence 56789999999999875 6777887 5555543
No 105
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=51.86 E-value=18 Score=28.20 Aligned_cols=38 Identities=24% Similarity=0.429 Sum_probs=27.1
Q ss_pred HHHHHHHHcCC--------ChhhhhhhcCCCC----HHHHHHHHHHHHhh
Q 021071 74 MIIRAHARFGN--------KWATIARLLNGRT----DNAIKNHWNSTLKR 111 (317)
Q Consensus 74 ~Li~lv~k~G~--------kWs~IA~~lpgRT----~~q~KnRw~~~lkr 111 (317)
.|..+|.+.|+ .|..|+..|.--. ...+|.+|.++|-.
T Consensus 48 ~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~ 97 (107)
T 2lm1_A 48 TLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILHP 97 (107)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 36677777773 6999999983322 46788888777654
No 106
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=51.43 E-value=24 Score=26.01 Aligned_cols=41 Identities=12% Similarity=0.202 Sum_probs=30.3
Q ss_pred HHHHHHHHHHH----cCCChhhhhhhcCCCCHHHHHHHHHHHHhhh
Q 021071 71 EDEMIIRAHAR----FGNKWATIARLLNGRTDNAIKNHWNSTLKRK 112 (317)
Q Consensus 71 ED~~Li~lv~k----~G~kWs~IA~~lpgRT~~q~KnRw~~~lkrk 112 (317)
.+..++.+..- .|-.+..||..+ |-+...|+.+....+++-
T Consensus 22 ~er~vl~l~~~l~~~~~~s~~EIA~~l-gis~~tV~~~~~ra~~kL 66 (87)
T 1tty_A 22 REAMVLRMRYGLLDGKPKTLEEVGQYF-NVTRERIRQIEVKALRKL 66 (87)
T ss_dssp HHHHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 44455555544 567899999999 999999999876655443
No 107
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=50.74 E-value=26 Score=24.74 Aligned_cols=43 Identities=16% Similarity=0.188 Sum_probs=32.0
Q ss_pred CChHHHHHHHHHHHHcCCChhhhhhhcCCCCHHHHHHHHHHHHhhh
Q 021071 67 FTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 112 (317)
Q Consensus 67 WT~EED~~Li~lv~k~G~kWs~IA~~lpgRT~~q~KnRw~~~lkrk 112 (317)
+|+.|-+. +.++ ..|.....||..+ |-+...|+.+....+++-
T Consensus 17 L~~~e~~v-l~l~-~~g~s~~eIA~~l-~is~~tV~~~~~r~~~kl 59 (79)
T 1x3u_A 17 LSERERQV-LSAV-VAGLPNKSIAYDL-DISPRTVEVHRANVMAKM 59 (79)
T ss_dssp HCHHHHHH-HHHH-TTTCCHHHHHHHT-TSCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHH-HHHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 45555444 4454 6788899999999 899999999886666553
No 108
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=50.09 E-value=11 Score=30.56 Aligned_cols=38 Identities=16% Similarity=0.302 Sum_probs=29.7
Q ss_pred HHHHHHHcCC--------ChhhhhhhcCCCCHHHHHHHHHHHHhhh
Q 021071 75 IIRAHARFGN--------KWATIARLLNGRTDNAIKNHWNSTLKRK 112 (317)
Q Consensus 75 Li~lv~k~G~--------kWs~IA~~lpgRT~~q~KnRw~~~lkrk 112 (317)
|..+|.+.|+ .|..|+..|.--....+|+.|.++|-.-
T Consensus 53 Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~Lr~~Y~k~L~~y 98 (123)
T 1kkx_A 53 LYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPY 98 (123)
T ss_dssp HHHHHTTTSCHHHHTTSHHHHHHHHHHTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHhccccccHHHHHHHHCCChHHHHHHHHHHHHHHH
Confidence 7777777774 5999999985444889999998888654
No 109
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=48.81 E-value=32 Score=25.83 Aligned_cols=46 Identities=20% Similarity=0.193 Sum_probs=35.4
Q ss_pred CCCCChHHHHHHHHHHHHcCCChhhhhhhcCCCCHHHHHHHHHHHHhhh
Q 021071 64 HRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 112 (317)
Q Consensus 64 r~~WT~EED~~Li~lv~k~G~kWs~IA~~lpgRT~~q~KnRw~~~lkrk 112 (317)
....|+.|-+.|.- +. .|..-..||..| |-+...|+++...++++-
T Consensus 27 ~~~Lt~rE~~Vl~l-~~-~G~s~~eIA~~L-~iS~~TV~~~~~~i~~Kl 72 (90)
T 3ulq_B 27 QDVLTPRECLILQE-VE-KGFTNQEIADAL-HLSKRSIEYSLTSIFNKL 72 (90)
T ss_dssp --CCCHHHHHHHHH-HH-TTCCHHHHHHHH-TCCHHHHHHHHHHHHHHT
T ss_pred ccCCCHHHHHHHHH-HH-cCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 44678777765544 44 888999999999 999999999997777654
No 110
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=47.44 E-value=17 Score=29.09 Aligned_cols=38 Identities=18% Similarity=0.398 Sum_probs=27.3
Q ss_pred HHHHHHHHcCC--------ChhhhhhhcCCCC----HHHHHHHHHHHHhh
Q 021071 74 MIIRAHARFGN--------KWATIARLLNGRT----DNAIKNHWNSTLKR 111 (317)
Q Consensus 74 ~Li~lv~k~G~--------kWs~IA~~lpgRT----~~q~KnRw~~~lkr 111 (317)
.|..+|.+.|+ .|..|+..|.--. ...+|.+|.++|-.
T Consensus 44 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~ 93 (117)
T 2jrz_A 44 SLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYP 93 (117)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 37777888873 6999999983322 46788888776654
No 111
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=47.41 E-value=29 Score=26.06 Aligned_cols=44 Identities=18% Similarity=0.114 Sum_probs=34.1
Q ss_pred CCChHHHHHHHHHHHHcCCChhhhhhhcCCCCHHHHHHHHHHHHhhh
Q 021071 66 AFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 112 (317)
Q Consensus 66 ~WT~EED~~Li~lv~k~G~kWs~IA~~lpgRT~~q~KnRw~~~lkrk 112 (317)
.+|+.|-+.|.- + ..|..-..||..| |-+...|++|....+++-
T Consensus 27 ~Lt~~e~~vl~l-~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~kL 70 (95)
T 3c57_A 27 GLTDQERTLLGL-L-SEGLTNKQIADRM-FLAEKTVKNYVSRLLAKL 70 (95)
T ss_dssp CCCHHHHHHHHH-H-HTTCCHHHHHHHH-TCCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHH-H-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 466666655554 4 7888899999999 999999999886666554
No 112
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=46.81 E-value=30 Score=23.85 Aligned_cols=45 Identities=18% Similarity=0.178 Sum_probs=34.1
Q ss_pred CCCChHHHHHHHHHHHHcCCChhhhhhhcCCCCHHHHHHHHHHHHhhh
Q 021071 65 RAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 112 (317)
Q Consensus 65 ~~WT~EED~~Li~lv~k~G~kWs~IA~~lpgRT~~q~KnRw~~~lkrk 112 (317)
..+|+.|-+.|.. + ..|.....||..+ |-+...|+.+...++++-
T Consensus 10 ~~L~~~e~~il~~-~-~~g~s~~eIA~~l-~is~~tV~~~~~~~~~kl 54 (74)
T 1fse_A 10 PLLTKREREVFEL-L-VQDKTTKEIASEL-FISEKTVRNHISNAMQKL 54 (74)
T ss_dssp CCCCHHHHHHHHH-H-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHH-H-HcCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 4577776665544 4 6778899999999 889999999886665443
No 113
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=46.41 E-value=29 Score=25.32 Aligned_cols=44 Identities=30% Similarity=0.354 Sum_probs=33.6
Q ss_pred CCChHHHHHHHHHHHHcCCChhhhhhhcCCCCHHHHHHHHHHHHhhh
Q 021071 66 AFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 112 (317)
Q Consensus 66 ~WT~EED~~Li~lv~k~G~kWs~IA~~lpgRT~~q~KnRw~~~lkrk 112 (317)
.+|+.|-+.|. ++ ..|..-..||..| |-+...|+++....+++-
T Consensus 21 ~Lt~~e~~vl~-l~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~kL 64 (82)
T 1je8_A 21 QLTPRERDILK-LI-AQGLPNKMIARRL-DITESTVKVHVKHMLKKM 64 (82)
T ss_dssp GSCHHHHHHHH-HH-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHH-HH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 46766665554 44 6788899999999 999999999886666553
No 114
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=46.11 E-value=21 Score=28.85 Aligned_cols=39 Identities=23% Similarity=0.307 Sum_probs=27.6
Q ss_pred HHHHHHHHcCC--------ChhhhhhhcCCCC----HHHHHHHHHHHHhhh
Q 021071 74 MIIRAHARFGN--------KWATIARLLNGRT----DNAIKNHWNSTLKRK 112 (317)
Q Consensus 74 ~Li~lv~k~G~--------kWs~IA~~lpgRT----~~q~KnRw~~~lkrk 112 (317)
.|..+|.++|+ +|..|+..|.--+ ...+|+.|.++|-.-
T Consensus 55 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~y 105 (125)
T 2cxy_A 55 RLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFAF 105 (125)
T ss_dssp HHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHH
Confidence 37777777774 6999999883322 457788887777553
No 115
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=45.84 E-value=20 Score=29.09 Aligned_cols=33 Identities=18% Similarity=0.008 Sum_probs=25.7
Q ss_pred HHHHcCCChhhhhhhcCCCCHHHHHHHHHHHHhh
Q 021071 78 AHARFGNKWATIARLLNGRTDNAIKNHWNSTLKR 111 (317)
Q Consensus 78 lv~k~G~kWs~IA~~lpgRT~~q~KnRw~~~lkr 111 (317)
++...|-....||..| |-+...|+++....+++
T Consensus 146 l~~~~g~s~~eIA~~l-gis~~tV~~~l~ra~~~ 178 (184)
T 2q1z_A 146 RAFFGDLTHRELAAET-GLPLGTIKSRIRLALDR 178 (184)
T ss_dssp HHHHSCCSSCCSTTTC-CCCCHHHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 3334578899999999 89999999988665544
No 116
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=44.97 E-value=35 Score=22.81 Aligned_cols=39 Identities=10% Similarity=0.176 Sum_probs=30.7
Q ss_pred HHHHHHHHHHcCCChhhhhhhcCCCCHHHHHHHHHHHHhhh
Q 021071 72 DEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 112 (317)
Q Consensus 72 D~~Li~lv~k~G~kWs~IA~~lpgRT~~q~KnRw~~~lkrk 112 (317)
+..++.+ ...|..-..||..| |-+...|+.+....+++-
T Consensus 3 e~~vl~l-~~~g~s~~eIA~~l-~is~~tV~~~~~~~~~kl 41 (61)
T 2jpc_A 3 ERQVLKL-IDEGYTNHGISEKL-HISIKTVETHRMNMMRKL 41 (61)
T ss_dssp HHHHHHH-HHTSCCSHHHHHHT-CSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHcCCCHHHHHHHh-CCCHHHHHHHHHHHHHHH
Confidence 4455666 46788899999999 999999999987666553
No 117
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=44.89 E-value=30 Score=28.21 Aligned_cols=34 Identities=9% Similarity=0.090 Sum_probs=25.8
Q ss_pred HHHHHcCCChhhhhhhcCCCCHHHHHHHHHHHHhh
Q 021071 77 RAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKR 111 (317)
Q Consensus 77 ~lv~k~G~kWs~IA~~lpgRT~~q~KnRw~~~lkr 111 (317)
.++...|-....||..+ |-+...|+++....+++
T Consensus 150 ~l~~~~g~s~~EIA~~l-gis~~tV~~~l~ra~~~ 183 (194)
T 1or7_A 150 TLRELDGLSYEEIAAIM-DCPVGTVRSRIFRAREA 183 (194)
T ss_dssp HHHHTTCCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 33334577899999999 89999999987655543
No 118
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=44.42 E-value=33 Score=29.62 Aligned_cols=83 Identities=16% Similarity=0.186 Sum_probs=42.0
Q ss_pred HHHHHHHHHHhCCCC--hHHHhhhCCCCCcc---cccccccccCC-CcccCCCCChHHHHHHHHHHHHcCCChhhhhhhc
Q 021071 20 DEALQQLVQKHGPRN--WSLISKSIPGRSGK---SCRLRWCNQLS-PQVEHRAFTPEEDEMIIRAHARFGNKWATIARLL 93 (317)
Q Consensus 20 D~~L~~lV~kyG~~n--W~~IA~~lp~Rs~k---qCr~Rw~n~L~-p~ikr~~WT~EED~~Li~lv~k~G~kWs~IA~~l 93 (317)
+.++..+...-|.++ =..|-..+.+.+.. .+.+.|..-.. |.-..|-||.++|+.|. +++=..|.+..
T Consensus 64 ~~Lv~~l~~e~Gi~~~fs~~Ii~ALs~tsM~~p~~VL~~l~~GkgiP~N~pGIWT~eDDe~L~------s~d~~dikrL~ 137 (168)
T 3cz6_A 64 EKLVQDLCDETGIRKNFSTSILTCLSGDLMVFPRYFLNMFKDNVNPPPNVPGIWTHDDDESLK------SNDQEQIRKLV 137 (168)
T ss_dssp HHHHHHHHHHHCBCHHHHHHHHHHTTTCGGGHHHHHHHHHHHTCSSCTTCTTCCCHHHHHHHH------SCCHHHHHHHH
T ss_pred HHHHHHHHHHhCcccccHHHHHHHhcCCcccCHHHHHHHHHhCCCCCCCCCCCCChhhHHHHH------cCCHHHHHHHH
Confidence 344444545666543 13333344344433 34444443332 45568999999999876 22223333333
Q ss_pred CCCCHHHHHHHHHHH
Q 021071 94 NGRTDNAIKNHWNST 108 (317)
Q Consensus 94 pgRT~~q~KnRw~~~ 108 (317)
.......+..||+.+
T Consensus 138 kKHG~erie~R~~FL 152 (168)
T 3cz6_A 138 KKHGTGRMEMRKRFF 152 (168)
T ss_dssp HHHCHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHH
Confidence 333455566666443
No 119
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=43.87 E-value=22 Score=28.65 Aligned_cols=38 Identities=24% Similarity=0.400 Sum_probs=26.7
Q ss_pred HHHHHHHHcCC--------ChhhhhhhcCCCC----HHHHHHHHHHHHhh
Q 021071 74 MIIRAHARFGN--------KWATIARLLNGRT----DNAIKNHWNSTLKR 111 (317)
Q Consensus 74 ~Li~lv~k~G~--------kWs~IA~~lpgRT----~~q~KnRw~~~lkr 111 (317)
.|..+|.+.|+ +|..|+..|.--. ...+|.+|.++|-.
T Consensus 46 ~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~ 95 (122)
T 2eqy_A 46 QLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILNP 95 (122)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 36777777774 6999999883321 35778888777654
No 120
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=41.36 E-value=36 Score=25.13 Aligned_cols=44 Identities=23% Similarity=0.194 Sum_probs=33.9
Q ss_pred CCChHHHHHHHHHHHHcCCChhhhhhhcCCCCHHHHHHHHHHHHhhh
Q 021071 66 AFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 112 (317)
Q Consensus 66 ~WT~EED~~Li~lv~k~G~kWs~IA~~lpgRT~~q~KnRw~~~lkrk 112 (317)
.+|+.|-+.|. ++ ..|..-..||..| |-+...|++|....+++-
T Consensus 29 ~Lt~~e~~vl~-l~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~kL 72 (91)
T 2rnj_A 29 MLTEREMEILL-LI-AKGYSNQEIASAS-HITIKTVKTHVSNILSKL 72 (91)
T ss_dssp GCCSHHHHHHH-HH-HTTCCTTHHHHHH-TCCHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHH-HH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 46776666554 44 6788899999999 999999999986666553
No 121
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=40.12 E-value=30 Score=28.43 Aligned_cols=45 Identities=13% Similarity=0.077 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHcCC-ChhhhhhhcCCCCHHHHHHHHHHHHhhhhcc
Q 021071 70 EEDEMIIRAHARFGN-KWATIARLLNGRTDNAIKNHWNSTLKRKCSS 115 (317)
Q Consensus 70 EED~~Li~lv~k~G~-kWs~IA~~lpgRT~~q~KnRw~~~lkrk~~~ 115 (317)
+-|..|+++.++.|. .|..||+.+ |-+...|..|++.+.+..+..
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~l-g~s~~tv~~rl~~L~~~g~i~ 48 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKV-GLSTTPCWRRIQKMEEDGVIR 48 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHH-TCCHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCee
Confidence 567788888877774 599999999 999999999998888776544
No 122
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=39.90 E-value=63 Score=19.71 Aligned_cols=38 Identities=13% Similarity=0.172 Sum_probs=28.5
Q ss_pred CCChHHHHHHHHHHHHcCCChhhhhhhcCCCCHHHHHHHH
Q 021071 66 AFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHW 105 (317)
Q Consensus 66 ~WT~EED~~Li~lv~k~G~kWs~IA~~lpgRT~~q~KnRw 105 (317)
..+.++-..++.++ .-|.....||+.| |-+...|+.+.
T Consensus 5 ~l~~~~~~~i~~~~-~~g~s~~~IA~~l-gis~~Tv~~~~ 42 (51)
T 1tc3_C 5 ALSDTERAQLDVMK-LLNVSLHEMSRKI-SRSRHCIRVYL 42 (51)
T ss_dssp CCCHHHHHHHHHHH-HTTCCHHHHHHHH-TCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHH-HcCCCHHHHHHHH-CcCHHHHHHHH
Confidence 45667766777665 4677899999999 88888887654
No 123
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=38.53 E-value=49 Score=25.85 Aligned_cols=40 Identities=10% Similarity=0.010 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHcCCChhhhhhhcCCCCHHHHHHHHHHHHhh
Q 021071 71 EDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKR 111 (317)
Q Consensus 71 ED~~Li~lv~k~G~kWs~IA~~lpgRT~~q~KnRw~~~lkr 111 (317)
.+..++.++...|-....||..+ |-+...|+.+....+++
T Consensus 29 ~~r~vl~l~~~~g~s~~EIA~~l-giS~~tV~~~l~ra~~k 68 (113)
T 1xsv_A 29 KQRNYLELFYLEDYSLSEIADTF-NVSRQAVYDNIRRTGDL 68 (113)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHT-TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 44556667667888999999999 99999999887554443
No 124
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=38.40 E-value=41 Score=26.27 Aligned_cols=31 Identities=23% Similarity=0.283 Sum_probs=24.8
Q ss_pred HHcCCChhhhhhhcCCCCHHHHHHHHHHHHhh
Q 021071 80 ARFGNKWATIARLLNGRTDNAIKNHWNSTLKR 111 (317)
Q Consensus 80 ~k~G~kWs~IA~~lpgRT~~q~KnRw~~~lkr 111 (317)
...|-....||..| |-+...|+++....+++
T Consensus 121 ~~~g~s~~EIA~~l-gis~~tV~~~~~ra~~~ 151 (164)
T 3mzy_A 121 LIRGYSYREIATIL-SKNLKSIDNTIQRIRKK 151 (164)
T ss_dssp HTTTCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 34677899999999 99999999988655443
No 125
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=38.38 E-value=1.2e+02 Score=23.91 Aligned_cols=77 Identities=18% Similarity=0.109 Sum_probs=46.5
Q ss_pred CCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCccccccccccc------CCCccc----CCCCChHHHHHHHHHHHHc
Q 021071 13 GPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQ------LSPQVE----HRAFTPEEDEMIIRAHARF 82 (317)
Q Consensus 13 G~WT~EED~~L~~lV~kyG~~nW~~IA~~lp~Rs~kqCr~Rw~n~------L~p~ik----r~~WT~EED~~Li~lv~k~ 82 (317)
...|.|+-..++.++. .| .....||+.+ +.+...+ .||.+. +.+... ....++++.+.|++++.+.
T Consensus 31 ~~~s~e~r~~iv~~~~-~G-~s~~~iA~~l-gis~~TV-~rw~~~~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~~~ 106 (149)
T 1k78_A 31 RPLPDVVRQRIVELAH-QG-VRPCDISRQL-RVSHGCV-SKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQN 106 (149)
T ss_dssp SCCCHHHHHHHHHHHH-TT-CCHHHHHHHH-TCCHHHH-HHHHHHHHHHSCCCCCCCCCCCCSSSCHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHH-cC-CCHHHHHHHH-CcCHHHH-HHHHHHHHHcCCCCccCCCCCCCCCCCHHHHHHHHHHHHhC
Confidence 3689999888888884 45 4589999988 4444333 333321 222211 2357888888888887664
Q ss_pred C-CChhhhhhhc
Q 021071 83 G-NKWATIARLL 93 (317)
Q Consensus 83 G-~kWs~IA~~l 93 (317)
. -.-..|+..|
T Consensus 107 ~~~s~~~i~~~l 118 (149)
T 1k78_A 107 PTMFAWEIRDRL 118 (149)
T ss_dssp TTCCHHHHHHHH
T ss_pred cchhHHHHHHHH
Confidence 3 2223455444
No 126
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=38.17 E-value=49 Score=24.74 Aligned_cols=36 Identities=19% Similarity=0.186 Sum_probs=28.6
Q ss_pred hHHHHHHHHHHHHcCCChhhhhhhcCCCCHHHHHHHH
Q 021071 69 PEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHW 105 (317)
Q Consensus 69 ~EED~~Li~lv~k~G~kWs~IA~~lpgRT~~q~KnRw 105 (317)
.-|.+.|.++..++|++.++.|+.| |=+...+..|.
T Consensus 50 ~~E~~~i~~aL~~~~gn~~~aA~~L-GIsr~tL~rkl 85 (91)
T 1ntc_A 50 ELERTLLTTALRHTQGHKQEAARLL-GWGAATLTAKL 85 (91)
T ss_dssp HHHHHHHHHHHHHTTTCTTHHHHHT-TCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHH-CcCHHHHHHHH
Confidence 3467788899999999999999999 77777665544
No 127
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=36.54 E-value=15 Score=28.07 Aligned_cols=35 Identities=26% Similarity=0.464 Sum_probs=23.9
Q ss_pred HHHHHHHcC--------CChhhhhhhcCCC----CHHHHHHHHHHHH
Q 021071 75 IIRAHARFG--------NKWATIARLLNGR----TDNAIKNHWNSTL 109 (317)
Q Consensus 75 Li~lv~k~G--------~kWs~IA~~lpgR----T~~q~KnRw~~~l 109 (317)
|..+|.+.| +.|..|+..|.-- ....+|++|.++|
T Consensus 41 Ly~~V~~~GG~~~V~~~~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~L 87 (96)
T 2jxj_A 41 LSKIVASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERIL 87 (96)
T ss_dssp HHHHHHHHHTTHHHHHHTTHHHHHHHHTCCSCSCHHHHHHHHHTTTT
T ss_pred HHHHHHHcCCHHHHccCCcHHHHHHHhCCCCcCcHHHHHHHHHHHHH
Confidence 677777776 3699999988321 1457777776554
No 128
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=36.12 E-value=48 Score=27.74 Aligned_cols=38 Identities=13% Similarity=0.128 Sum_probs=27.7
Q ss_pred HHHHHHHHHcCCChhhhhhhcCCCCHHHHHHHHHHHHhh
Q 021071 73 EMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKR 111 (317)
Q Consensus 73 ~~Li~lv~k~G~kWs~IA~~lpgRT~~q~KnRw~~~lkr 111 (317)
..++.++-..|-....||..| |-+...|+.+....+++
T Consensus 193 r~vl~l~~~~g~s~~EIA~~l-gis~~~V~~~~~ra~~~ 230 (239)
T 1rp3_A 193 KLVIQLIFYEELPAKEVAKIL-ETSVSRVSQLKAKALER 230 (239)
T ss_dssp HHHHHHHHTSCCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHh-CCCHHHHHHHHHHHHHH
Confidence 334444445677899999999 99999999887555443
No 129
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=35.64 E-value=47 Score=23.04 Aligned_cols=34 Identities=12% Similarity=0.060 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHcCCChhhhhhhcCCCCHHHHHHH
Q 021071 70 EEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNH 104 (317)
Q Consensus 70 EED~~Li~lv~k~G~kWs~IA~~lpgRT~~q~KnR 104 (317)
-|.+.|.++...+++++++.|+.| |=+...+..+
T Consensus 19 ~E~~~i~~aL~~~~gn~~~aA~~L-Gisr~tL~rk 52 (63)
T 3e7l_A 19 FEKIFIEEKLREYDYDLKRTAEEI-GIDLSNLYRK 52 (63)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHH-TCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHH-CcCHHHHHHH
Confidence 467788899999999999999998 6565544443
No 130
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=35.33 E-value=37 Score=28.16 Aligned_cols=38 Identities=18% Similarity=0.260 Sum_probs=27.4
Q ss_pred HHHHHHHHcCC--------ChhhhhhhcCC--C---CHHHHHHHHHHHHhh
Q 021071 74 MIIRAHARFGN--------KWATIARLLNG--R---TDNAIKNHWNSTLKR 111 (317)
Q Consensus 74 ~Li~lv~k~G~--------kWs~IA~~lpg--R---T~~q~KnRw~~~lkr 111 (317)
.|..+|.+.|+ .|..|+..|.- . ....+|..|.++|-.
T Consensus 68 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~ 118 (145)
T 2kk0_A 68 MLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYP 118 (145)
T ss_dssp HHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSH
T ss_pred HHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHH
Confidence 37777778874 69999998832 2 256888888877754
No 131
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=34.83 E-value=26 Score=27.39 Aligned_cols=38 Identities=18% Similarity=0.476 Sum_probs=27.2
Q ss_pred HHHHHHHHcC--------CChhhhhhhcCC--C---CHHHHHHHHHHHHhh
Q 021071 74 MIIRAHARFG--------NKWATIARLLNG--R---TDNAIKNHWNSTLKR 111 (317)
Q Consensus 74 ~Li~lv~k~G--------~kWs~IA~~lpg--R---T~~q~KnRw~~~lkr 111 (317)
.|..+|.+.| +.|..|+..|.- . ....+|+.|..+|-.
T Consensus 37 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~ 87 (107)
T 1ig6_A 37 TMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILP 87 (107)
T ss_dssp HHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTT
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 3677777777 369999998832 1 236789999877754
No 132
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=34.78 E-value=41 Score=27.10 Aligned_cols=38 Identities=13% Similarity=0.216 Sum_probs=28.1
Q ss_pred HHHHHHHHcCC--------ChhhhhhhcC--CC---CHHHHHHHHHHHHhh
Q 021071 74 MIIRAHARFGN--------KWATIARLLN--GR---TDNAIKNHWNSTLKR 111 (317)
Q Consensus 74 ~Li~lv~k~G~--------kWs~IA~~lp--gR---T~~q~KnRw~~~lkr 111 (317)
.|..+|.++|+ .|..|+..|. .. ....+|..|.++|-.
T Consensus 56 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~ 106 (128)
T 1c20_A 56 ELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYP 106 (128)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 47777888874 6999999883 22 257889999887755
No 133
>2yqf_A Ankyrin-1; death domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yvi_A
Probab=33.70 E-value=44 Score=26.11 Aligned_cols=35 Identities=23% Similarity=0.341 Sum_probs=27.8
Q ss_pred ChHHHHHHHHHHHHcCCChhhhhhhcCCCCHHHHHH
Q 021071 68 TPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKN 103 (317)
Q Consensus 68 T~EED~~Li~lv~k~G~kWs~IA~~lpgRT~~q~Kn 103 (317)
+..-+..|..+....|..|..+|+.| |=+..+|..
T Consensus 14 ~~~~~~~~~~ia~~lg~~Wk~LAr~L-g~s~~~I~~ 48 (111)
T 2yqf_A 14 TEQAEMKMAVISEHLGLSWAELAREL-QFSVEDINR 48 (111)
T ss_dssp SHHHHHHHHHHHHHHTTTHHHHHHHT-TCCHHHHHH
T ss_pred HhHHHHHHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 55666777778888999999999999 777766543
No 134
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=33.61 E-value=1.8e+02 Score=23.15 Aligned_cols=76 Identities=18% Similarity=0.108 Sum_probs=45.8
Q ss_pred CCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCccccccccccc------CCCcc----cCCCCChHHHHHHHHHHHHcC
Q 021071 14 PWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQ------LSPQV----EHRAFTPEEDEMIIRAHARFG 83 (317)
Q Consensus 14 ~WT~EED~~L~~lV~kyG~~nW~~IA~~lp~Rs~kqCr~Rw~n~------L~p~i----kr~~WT~EED~~Li~lv~k~G 83 (317)
..|.++-..++.++. .| .....||+.+ +.+...+ .||.+. +.+.. .....+.++.+.|++++.+..
T Consensus 25 ~~s~e~r~~ii~l~~-~G-~s~~~IA~~l-gis~~TV-~rwl~r~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~~~~ 100 (159)
T 2k27_A 25 PLPEVVRQRIVDLAH-QG-VRPCDISRQL-RVSHGCV-SKILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNP 100 (159)
T ss_dssp SSCHHHHHHHHHHHH-HT-CCHHHHHHHH-TCCSHHH-HHHHCCSSTTSCCCCCCCCCCCCCCCCTTHHHHHHHHHHHCS
T ss_pred CCCHHHHHHHHHHHH-cC-CCHHHHHHHH-CcCHHHH-HHHHHHHHhcCCccCCCCCCCCCCCCCHHHHHHHHHHHHHCc
Confidence 688888888888884 45 4589999988 4444333 234332 22211 134578888888888876543
Q ss_pred -CChhhhhhhc
Q 021071 84 -NKWATIARLL 93 (317)
Q Consensus 84 -~kWs~IA~~l 93 (317)
-.-..|+..|
T Consensus 101 ~~s~~~i~~~l 111 (159)
T 2k27_A 101 TMFAWEIRDRL 111 (159)
T ss_dssp SSCHHHHHHHH
T ss_pred cchHHHHHHHH
Confidence 2223455444
No 135
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=32.40 E-value=76 Score=24.26 Aligned_cols=46 Identities=22% Similarity=0.302 Sum_probs=35.8
Q ss_pred CCCCChHHHHHHHHHHHHcCCChhhhhhhcCCCCHHHHHHHHHHHHhhh
Q 021071 64 HRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 112 (317)
Q Consensus 64 r~~WT~EED~~Li~lv~k~G~kWs~IA~~lpgRT~~q~KnRw~~~lkrk 112 (317)
....|+.|-+.|. ++ ..|..-..||..| |-+...|+.+...++++-
T Consensus 32 ~~~Lt~re~~Vl~-l~-~~G~s~~EIA~~L-~iS~~TV~~~l~ri~~KL 77 (99)
T 1p4w_A 32 DKRLSPKESEVLR-LF-AEGFLVTEIAKKL-NRSIKTISSQKKSAMMKL 77 (99)
T ss_dssp SSSCCHHHHHHHH-HH-HHTCCHHHHHHHH-TSCHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHH-HH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 3557887777664 43 3788899999999 889999999887776654
No 136
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=30.88 E-value=77 Score=24.78 Aligned_cols=42 Identities=21% Similarity=0.124 Sum_probs=32.1
Q ss_pred CChHHHHHHHHHHHHcCCChhhhhhhcCCCCHHHHHHHHHHHHh
Q 021071 67 FTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLK 110 (317)
Q Consensus 67 WT~EED~~Li~lv~k~G~kWs~IA~~lpgRT~~q~KnRw~~~lk 110 (317)
+++. +..++.++...|..-..||..+ |-+...|+.+....++
T Consensus 23 L~~~-~r~vl~l~y~~g~s~~EIA~~l-giS~~tV~~~l~ra~~ 64 (113)
T 1s7o_A 23 LTDK-QMNYIELYYADDYSLAEIADEF-GVSRQAVYDNIKRTEK 64 (113)
T ss_dssp SCHH-HHHHHHHHHHTCCCHHHHHHHH-TCCHHHHHHHHHHHHH
T ss_pred CCHH-HHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 4444 4456666667899999999999 9999999988765553
No 137
>2jvw_A Uncharacterized protein; solution structure, alpha helical protein, structural GE unknown function, PSI-2, protein structure initiative; NMR {Vibrio fischeri}
Probab=30.56 E-value=39 Score=26.12 Aligned_cols=45 Identities=24% Similarity=0.363 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhCCCChHHHhhhCCCCCcccccccccccCCCcc-------cCCCCChHHHHHHH
Q 021071 20 DEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQV-------EHRAFTPEEDEMII 76 (317)
Q Consensus 20 D~~L~~lV~kyG~~nW~~IA~~lp~Rs~kqCr~Rw~n~L~p~i-------kr~~WT~EED~~Li 76 (317)
+.+|.++|+.|| |..++..+.-|+-+ .+|++ ++.+|-.+.-+.|.
T Consensus 18 E~ilt~Lv~~YG---W~~L~~~i~I~CF~---------~~PSikSSLKFLRKTpWAR~KVE~lY 69 (88)
T 2jvw_A 18 QKLLTELVEHYG---WEELSYMVNINCFK---------KDPSIKSSLKFLRKTDWARERVENIY 69 (88)
T ss_dssp HHHHHHHHHHTC---HHHHHHHTTSSSTT---------SSCCHHHHHHHHHHSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC---HHHHHhhcccccCC---------CCCchHHHHHHHhcCHhHHHHHHHHH
Confidence 578999999999 99999998544322 34443 35567666655443
No 138
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=30.52 E-value=42 Score=27.18 Aligned_cols=38 Identities=18% Similarity=0.349 Sum_probs=27.1
Q ss_pred HHHHHHHHcCC--------Chhhhhhhc--CCC---CHHHHHHHHHHHHhh
Q 021071 74 MIIRAHARFGN--------KWATIARLL--NGR---TDNAIKNHWNSTLKR 111 (317)
Q Consensus 74 ~Li~lv~k~G~--------kWs~IA~~l--pgR---T~~q~KnRw~~~lkr 111 (317)
.|..+|.++|+ .|..||..| +.- ....+|++|.++|-.
T Consensus 46 ~Ly~~V~~~GG~~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~ 96 (121)
T 2rq5_A 46 CFFRLINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLS 96 (121)
T ss_dssp HHHHHHHHTTSHHHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHcCcHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHH
Confidence 37778888884 699999988 321 246788888766644
No 139
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=29.44 E-value=73 Score=26.50 Aligned_cols=46 Identities=17% Similarity=0.223 Sum_probs=36.7
Q ss_pred hHHHHHHHHHHHHcC-CChhhhhhhcCCCCHHHHHHHHHHHHhhhhcc
Q 021071 69 PEEDEMIIRAHARFG-NKWATIARLLNGRTDNAIKNHWNSTLKRKCSS 115 (317)
Q Consensus 69 ~EED~~Li~lv~k~G-~kWs~IA~~lpgRT~~q~KnRw~~~lkrk~~~ 115 (317)
.+-|..|+.+..+.| -.|..||+.+ |-+...|..|.+.+.+..+..
T Consensus 26 d~~d~~IL~~L~~~~~~s~~eLA~~l-glS~~tv~~rl~~L~~~G~I~ 72 (171)
T 2e1c_A 26 DEIDKKIIKILQNDGKAPLREISKIT-GLAESTIHERIRKLRESGVIK 72 (171)
T ss_dssp CHHHHHHHHHHHHCTTCCHHHHHHHH-TSCHHHHHHHHHHHHHTTSSC
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCeE
Confidence 355667888877777 4699999999 899999999998887766543
No 140
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=29.34 E-value=84 Score=24.98 Aligned_cols=45 Identities=13% Similarity=0.135 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHcC-CChhhhhhhcCCCCHHHHHHHHHHHHhhhhcc
Q 021071 70 EEDEMIIRAHARFG-NKWATIARLLNGRTDNAIKNHWNSTLKRKCSS 115 (317)
Q Consensus 70 EED~~Li~lv~k~G-~kWs~IA~~lpgRT~~q~KnRw~~~lkrk~~~ 115 (317)
+-|..|+.+....| -.+..||+.+ |-+...|..|.+.+.+..+..
T Consensus 9 ~~d~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~i~ 54 (151)
T 2dbb_A 9 RVDMQLVKILSENSRLTYRELADIL-NTTRQRIARRIDKLKKLGIIR 54 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHT-TSCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCEE
Confidence 44667777777776 4699999999 889999999998888776554
No 141
>2o71_A Death domain-containing protein cradd; raidd, apoptosis; 2.00A {Homo sapiens}
Probab=28.03 E-value=57 Score=26.02 Aligned_cols=28 Identities=25% Similarity=0.461 Sum_probs=21.3
Q ss_pred HHHHHHHHcCCChhhhhhhcCCCCHHHHH
Q 021071 74 MIIRAHARFGNKWATIARLLNGRTDNAIK 102 (317)
Q Consensus 74 ~Li~lv~k~G~kWs~IA~~lpgRT~~q~K 102 (317)
.|..+....|..|..+|+.| |=+..+|.
T Consensus 26 ~l~~Ia~~LG~~Wk~LAR~L-Glse~dId 53 (115)
T 2o71_A 26 QINQLAQRLGPEWEPMVLSL-GLSQTDIY 53 (115)
T ss_dssp HHHHHHHHCCTTHHHHHHHT-TCCHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHc-CCCHHHHH
Confidence 35555788999999999999 66665553
No 142
>2of5_A Death domain-containing protein cradd; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=27.71 E-value=54 Score=26.12 Aligned_cols=28 Identities=25% Similarity=0.461 Sum_probs=21.5
Q ss_pred HHHHHHHHcCCChhhhhhhcCCCCHHHHH
Q 021071 74 MIIRAHARFGNKWATIARLLNGRTDNAIK 102 (317)
Q Consensus 74 ~Li~lv~k~G~kWs~IA~~lpgRT~~q~K 102 (317)
.|..+....|..|..+|+.| |=+..+|.
T Consensus 26 ~l~~Ia~~lG~~Wk~LAR~L-Glse~dId 53 (114)
T 2of5_A 26 QINQLAQRLGPEWEPMVLSL-GLSQTDIY 53 (114)
T ss_dssp HHHHHHHTCCSTHHHHHHTT-TCCHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHc-CCCHHHHH
Confidence 45556788999999999999 76666553
No 143
>2of5_H Leucine-rich repeat and death domain-containing protein; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=26.92 E-value=56 Score=25.91 Aligned_cols=30 Identities=20% Similarity=0.485 Sum_probs=23.3
Q ss_pred HHHHHHHHHHcCCChhhhhhhcCCCCHHHHH
Q 021071 72 DEMIIRAHARFGNKWATIARLLNGRTDNAIK 102 (317)
Q Consensus 72 D~~Li~lv~k~G~kWs~IA~~lpgRT~~q~K 102 (317)
|..|..+....|..|..+|+.| |=+..+|.
T Consensus 13 ~~~l~~ia~~lg~dWk~LAr~L-g~s~~~I~ 42 (118)
T 2of5_H 13 QSNLLSVAGRLGLDWPAVALHL-GVSYREVQ 42 (118)
T ss_dssp HHHHHHHHHTCCTTHHHHHHHT-TCCHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHc-CCCHHHHH
Confidence 3456677788999999999999 76666554
No 144
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=25.71 E-value=1e+02 Score=24.58 Aligned_cols=45 Identities=18% Similarity=0.233 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHcC-CChhhhhhhcCCCCHHHHHHHHHHHHhhhhcc
Q 021071 70 EEDEMIIRAHARFG-NKWATIARLLNGRTDNAIKNHWNSTLKRKCSS 115 (317)
Q Consensus 70 EED~~Li~lv~k~G-~kWs~IA~~lpgRT~~q~KnRw~~~lkrk~~~ 115 (317)
+-|..|+.+..+.| -.+..||+.+ |-+...|..|.+.+.+.-+..
T Consensus 7 ~~~~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~i~ 52 (151)
T 2cyy_A 7 EIDKKIIKILQNDGKAPLREISKIT-GLAESTIHERIRKLRESGVIK 52 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHH-CSCHHHHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCeE
Confidence 34567777777777 4699999999 899999999998887776543
No 145
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=25.40 E-value=38 Score=28.15 Aligned_cols=35 Identities=29% Similarity=0.551 Sum_probs=27.2
Q ss_pred HHHhhhCCCCCcccccccccccCCCcccCCCCChHHHHHHHH
Q 021071 36 SLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIR 77 (317)
Q Consensus 36 ~~IA~~lp~Rs~kqCr~Rw~n~L~p~ikr~~WT~EED~~Li~ 77 (317)
..||..+.|++..+||..|. + ...||+||++.|.+
T Consensus 119 ~~vA~~ikgkt~eeir~~f~------I-~nd~t~eEe~~ir~ 153 (160)
T 2p1m_A 119 QTVADMIKGKTPEEIRTTFN------I-KNDFTPEEEEEVRR 153 (160)
T ss_dssp HHHHHTTTTCCHHHHHHHTT------C-CCCCCHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHcC------C-CCCCCHHHHHHHHH
Confidence 57788889999999998762 2 23599999988754
No 146
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=24.96 E-value=2.3e+02 Score=21.52 Aligned_cols=88 Identities=18% Similarity=0.176 Sum_probs=52.8
Q ss_pred CCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCcccccccccccCC------CcccCCCCChHHHHHHHHHHHHcCCCh
Q 021071 13 GPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLS------PQVEHRAFTPEEDEMIIRAHARFGNKW 86 (317)
Q Consensus 13 G~WT~EED~~L~~lV~kyG~~nW~~IA~~lp~Rs~kqCr~Rw~n~L~------p~ikr~~WT~EED~~Li~lv~k~G~kW 86 (317)
...|.++-..++.++. .| ..-..||+.+ |.+...++ ||.+... ..-.....+++++..|+.+...-.-.-
T Consensus 5 ~~~s~~~r~~i~~~~~-~G-~s~~~ia~~l-gis~~Tv~-r~~~~~~~~g~~~~~gr~~~l~~~~~~~i~~~~~~~~~s~ 80 (141)
T 1u78_A 5 SALSDTERAQLDVMKL-LN-VSLHEMSRKI-SRSRHCIR-VYLKDPVSYGTSKRAPRRKALSVRDERNVIRAASNSCKTA 80 (141)
T ss_dssp CCCCHHHHHHHHHHHH-TT-CCHHHHHHHH-TCCHHHHH-HHHHSGGGTTCCCCCCCCCSSCHHHHHHHHHHHHHCCCCH
T ss_pred ccCCHHHHHHHHHHHH-cC-CCHHHHHHHH-CcCHHHHH-HHHHcccccCCcCCCCCCCcCCHHHHHHHHHHHhCCCCCH
Confidence 3578888888888773 45 4589999988 55555443 3322211 111223578888888887733222345
Q ss_pred hhhhhhcCC--CCHHHHHHHH
Q 021071 87 ATIARLLNG--RTDNAIKNHW 105 (317)
Q Consensus 87 s~IA~~lpg--RT~~q~KnRw 105 (317)
..|+..| | -+...|....
T Consensus 81 ~~i~~~l-g~~~s~~tV~r~l 100 (141)
T 1u78_A 81 RDIRNEL-QLSASKRTILNVI 100 (141)
T ss_dssp HHHHHHT-TCCSCHHHHHHHH
T ss_pred HHHHHHH-CCCccHHHHHHHH
Confidence 6788877 4 4556665443
No 147
>1wxp_A THO complex subunit 1; death domain, structural genomics, nuclear matrix, riken structural genomics/proteomics initiative, RSGI, transport protein; NMR {Homo sapiens}
Probab=24.57 E-value=69 Score=24.94 Aligned_cols=31 Identities=26% Similarity=0.478 Sum_probs=22.9
Q ss_pred HHHHHHHHHHcCCChhhhhhhcCCCCHHHHHH
Q 021071 72 DEMIIRAHARFGNKWATIARLLNGRTDNAIKN 103 (317)
Q Consensus 72 D~~Li~lv~k~G~kWs~IA~~lpgRT~~q~Kn 103 (317)
+..|-.+....|..|..+|++| |=+..+|..
T Consensus 18 ~~~~~~ia~~lg~~Wk~LAr~L-g~~~~~I~~ 48 (110)
T 1wxp_A 18 GEQIEVFANKLGEQWKILAPYL-EMKDSEIRQ 48 (110)
T ss_dssp HHHHHHHHHHHTTTHHHHTTTT-TCCHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHh-CCCHHHHHH
Confidence 3445566677799999999999 777766643
No 148
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=24.04 E-value=66 Score=24.09 Aligned_cols=35 Identities=17% Similarity=0.053 Sum_probs=27.2
Q ss_pred hHHHHHHHHHHHHcCCChhhhhhhcCCCCHHHHHHH
Q 021071 69 PEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNH 104 (317)
Q Consensus 69 ~EED~~Li~lv~k~G~kWs~IA~~lpgRT~~q~KnR 104 (317)
.-|.+.|.++..+++++.++.|+.| |=+...+..+
T Consensus 40 ~~Er~~I~~aL~~~~GN~s~AA~~L-GISR~TLyrK 74 (81)
T 1umq_A 40 RVRWEHIQRIYEMCDRNVSETARRL-NMHRRTLQRI 74 (81)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHH-TSCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHh-CCCHHHHHHH
Confidence 4466778889999999999999998 7666655443
No 149
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=22.93 E-value=17 Score=30.04 Aligned_cols=40 Identities=18% Similarity=0.234 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHhCCCChHHHhhhCCCCCcccccccccccC
Q 021071 18 EEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQL 58 (317)
Q Consensus 18 EED~~L~~lV~kyG~~nW~~IA~~lp~Rs~kqCr~Rw~n~L 58 (317)
+-|.+|+.++++.+...|..||+.+ |-+...|+.|+++..
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~l-g~s~~tv~~rl~~L~ 42 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKV-GLSTTPCWRRIQKME 42 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHH-TCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHH-CcCHHHHHHHHHHHH
Confidence 5688899999998888999999998 778888888887653
No 150
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=21.39 E-value=1.1e+02 Score=26.69 Aligned_cols=44 Identities=25% Similarity=0.277 Sum_probs=32.9
Q ss_pred CCChHHHHHHHHHHHHcCCChhhhhhhcCCCCHHHHHHHHHHHHhhh
Q 021071 66 AFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 112 (317)
Q Consensus 66 ~WT~EED~~Li~lv~k~G~kWs~IA~~lpgRT~~q~KnRw~~~lkrk 112 (317)
..++.|- .++.++ ..|-.-..||..| |.+...||.|....+++-
T Consensus 197 ~L~~~er-evl~L~-~~G~s~~EIA~~L-~iS~~TVk~~l~ra~~kL 240 (258)
T 3clo_A 197 ILSEREK-EILRCI-RKGLSSKEIAATL-YISVNTVNRHRQNILEKL 240 (258)
T ss_dssp SSCHHHH-HHHHHH-HTTCCHHHHHHHH-TCCHHHHHHHHHHHHHHT
T ss_pred cCCHHHH-HHHHHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 4554444 455555 5888999999999 999999999986666543
No 151
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=20.84 E-value=1.4e+02 Score=23.71 Aligned_cols=45 Identities=16% Similarity=0.164 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHcC-CChhhhhhhcCCCCHHHHHHHHHHHHhhhhcc
Q 021071 70 EEDEMIIRAHARFG-NKWATIARLLNGRTDNAIKNHWNSTLKRKCSS 115 (317)
Q Consensus 70 EED~~Li~lv~k~G-~kWs~IA~~lpgRT~~q~KnRw~~~lkrk~~~ 115 (317)
+-|..|+.+....| -.+..||+.+ |-+...|..|.+.+.+.-+..
T Consensus 8 ~~d~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~i~ 53 (152)
T 2cg4_A 8 NLDRGILEALMGNARTAYAELAKQF-GVSPETIHVRVEKMKQAGIIT 53 (152)
T ss_dssp HHHHHHHHHHHHCTTSCHHHHHHHH-TSCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHcCCcc
Confidence 34667777777777 4699999999 899999999998887776554
No 152
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=20.39 E-value=2.5e+02 Score=21.93 Aligned_cols=42 Identities=14% Similarity=0.152 Sum_probs=33.3
Q ss_pred CCCCChHHHHHHHHHHHHcCCChhhhhhhcCCCCHHHHHHHHHH
Q 021071 64 HRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNS 107 (317)
Q Consensus 64 r~~WT~EED~~Li~lv~k~G~kWs~IA~~lpgRT~~q~KnRw~~ 107 (317)
...+|.++-..++.++. -|.....||+.| |.+...|..+.+.
T Consensus 30 ~~~~s~e~r~~iv~~~~-~G~s~~~iA~~l-gis~~TV~rw~~~ 71 (149)
T 1k78_A 30 GRPLPDVVRQRIVELAH-QGVRPCDISRQL-RVSHGCVSKILGR 71 (149)
T ss_dssp TSCCCHHHHHHHHHHHH-TTCCHHHHHHHH-TCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH-cCCCHHHHHHHH-CcCHHHHHHHHHH
Confidence 34688888888888884 688889999999 8888888765543
No 153
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=20.32 E-value=1.5e+02 Score=22.69 Aligned_cols=40 Identities=10% Similarity=0.191 Sum_probs=27.5
Q ss_pred HHHHHHHHHHH----cCCChhhhhhhcCCCCHHHHHHHHHHHHhh
Q 021071 71 EDEMIIRAHAR----FGNKWATIARLLNGRTDNAIKNHWNSTLKR 111 (317)
Q Consensus 71 ED~~Li~lv~k----~G~kWs~IA~~lpgRT~~q~KnRw~~~lkr 111 (317)
.+..++.+.-- .|-.+..||..+ |-+...|+++...-+++
T Consensus 23 reR~Vi~Lry~l~~~e~~s~~EIA~~l-giS~~tVr~~~~rAlkk 66 (99)
T 3t72_q 23 REAKVLRMRFGIDMNTDYTLEEVGKQF-DVTRERIRQIEAKALRK 66 (99)
T ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 34445555322 246799999999 88999898887665544
Done!