BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021073
(317 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SV0|A Chain A, Crystal Structure Of Casein Kinase-1 Like Protein In Plant
Length = 483
Score = 344 bits (883), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 177/316 (56%), Positives = 210/316 (66%), Gaps = 7/316 (2%)
Query: 4 HEHC--RENKNLTGTARYASMNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTX 61
H+H RENKNLTGTARYAS+NTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGT
Sbjct: 162 HQHIPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTK 221
Query: 62 XXXXXXXXXXXVSTSIEALCRGYPTEFASYFHYCRSLRFDDKPDYAYLKRIFRDLFIREG 121
V+TSIEALCRGYPTEFASYFHYCRSLRFDDKPDY+YLKR+FRDLFIREG
Sbjct: 222 KQKYEKISEKKVATSIEALCRGYPTEFASYFHYCRSLRFDDKPDYSYLKRLFRDLFIREG 281
Query: 122 FQFDYVFDWTILKYQQSQLATPPARALVPGAGTSGAPPAIASGDRQTGGGEEGRPAGLXX 181
FQFDYVFDWTILKYQQSQ+A+ P RA+ GAG SG P DRQ+ G +EGR +G
Sbjct: 282 FQFDYVFDWTILKYQQSQIASAPPRAVGHGAGPSGLAPPALQNDRQS-GVDEGRTSGWSS 340
Query: 182 XXXXXXXXXGPVINSGSFSKQKSPVVNEPTMTKDTMLXXXXXXXXXXXXXXXXXXXXXXX 241
P+ + G+ +KQK+PV N+ + +K+ ++
Sbjct: 341 MDRRRAPP--PIASVGTLAKQKAPVGNDASFSKEPVISASNFLGRSSGSSRRPAVSSSRD 398
Query: 242 XXXFVGSETEPQRSRTTEASPGAMHXXXXXXXXXXXXXXDPKRSSSGRNTTHIKTYETTL 301
+EP R+R T+ASPGA +PK SSS R+++++K YE+ L
Sbjct: 399 VMPI--DTSEPSRTRATDASPGAFRRTSGPQKSSPVNSAEPKHSSSARHSSNVKNYESAL 456
Query: 302 KGIESLHFDTDERVHY 317
KGIE L+FD DERV Y
Sbjct: 457 KGIEGLNFDGDERVQY 472
>pdb|1CKJ|A Chain A, Casein Kinase I Delta Truncation Mutant Containing
Residues 1-317 Complex With Bound Tungstate
pdb|1CKJ|B Chain B, Casein Kinase I Delta Truncation Mutant Containing
Residues 1-317 Complex With Bound Tungstate
pdb|1CKI|A Chain A, Recombinant Casein Kinase I Delta Truncation Mutant
Containing Residues 1-317
pdb|1CKI|B Chain B, Recombinant Casein Kinase I Delta Truncation Mutant
Containing Residues 1-317
Length = 317
Score = 204 bits (519), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 94/137 (68%), Positives = 111/137 (81%), Gaps = 2/137 (1%)
Query: 4 HEHC--RENKNLTGTARYASMNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTX 61
H+H RENKNLTGTARYAS+NTHLGIEQSRRDDLESLGYVLMYF GSLPWQGLKA T
Sbjct: 162 HQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATK 221
Query: 62 XXXXXXXXXXXVSTSIEALCRGYPTEFASYFHYCRSLRFDDKPDYAYLKRIFRDLFIREG 121
+ST IE LC+GYP+EFA+Y ++CRSLRFDDKPDY+YL+++FR+LF R+G
Sbjct: 222 RQKYERISEKKMSTPIEVLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQG 281
Query: 122 FQFDYVFDWTILKYQQS 138
F +DYVFDW +LK+ S
Sbjct: 282 FSYDYVFDWNMLKFGAS 298
>pdb|3UYS|A Chain A, Crystal Structure Of Apo Human Ck1d
pdb|3UYS|B Chain B, Crystal Structure Of Apo Human Ck1d
pdb|3UYS|C Chain C, Crystal Structure Of Apo Human Ck1d
pdb|3UYS|D Chain D, Crystal Structure Of Apo Human Ck1d
pdb|3UYT|A Chain A, Crystal Structure Of Ck1d With Pf670462 From P1 Crystal
Form
pdb|3UYT|B Chain B, Crystal Structure Of Ck1d With Pf670462 From P1 Crystal
Form
pdb|3UYT|C Chain C, Crystal Structure Of Ck1d With Pf670462 From P1 Crystal
Form
pdb|3UYT|D Chain D, Crystal Structure Of Ck1d With Pf670462 From P1 Crystal
Form
pdb|3UZP|A Chain A, Crystal Structure Of Ck1d With Pf670462 From P21 Crystal
Form
pdb|3UZP|B Chain B, Crystal Structure Of Ck1d With Pf670462 From P21 Crystal
Form
pdb|4HNF|A Chain A, Crystal Structure Of Ck1d In Complex With Pf4800567
pdb|4HNF|B Chain B, Crystal Structure Of Ck1d In Complex With Pf4800567
pdb|4HGT|A Chain A, Crystal Structure Of Ck1d With Compound 13
pdb|4HGT|B Chain B, Crystal Structure Of Ck1d With Compound 13
Length = 296
Score = 203 bits (516), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 93/133 (69%), Positives = 109/133 (81%), Gaps = 2/133 (1%)
Query: 4 HEHC--RENKNLTGTARYASMNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTX 61
H+H RENKNLTGTARYAS+NTHLGIEQSRRDDLESLGYVLMYF GSLPWQGLKA T
Sbjct: 164 HQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATK 223
Query: 62 XXXXXXXXXXXVSTSIEALCRGYPTEFASYFHYCRSLRFDDKPDYAYLKRIFRDLFIREG 121
+ST IE LC+GYP+EFA+Y ++CRSLRFDDKPDY+YL+++FR+LF R+G
Sbjct: 224 RQKYERISEKKMSTPIEVLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQG 283
Query: 122 FQFDYVFDWTILK 134
F +DYVFDW +LK
Sbjct: 284 FSYDYVFDWNMLK 296
>pdb|4HNI|A Chain A, Crystal Structure Of Ck1e In Complex With Pf4800567
pdb|4HNI|B Chain B, Crystal Structure Of Ck1e In Complex With Pf4800567
pdb|4HOK|A Chain A, Crystal Structure Of Apo Ck1e
pdb|4HOK|C Chain C, Crystal Structure Of Apo Ck1e
pdb|4HOK|E Chain E, Crystal Structure Of Apo Ck1e
pdb|4HOK|G Chain G, Crystal Structure Of Apo Ck1e
pdb|4HOK|I Chain I, Crystal Structure Of Apo Ck1e
pdb|4HOK|K Chain K, Crystal Structure Of Apo Ck1e
pdb|4HOK|M Chain M, Crystal Structure Of Apo Ck1e
pdb|4HOK|O Chain O, Crystal Structure Of Apo Ck1e
pdb|4HOK|Q Chain Q, Crystal Structure Of Apo Ck1e
pdb|4HOK|S Chain S, Crystal Structure Of Apo Ck1e
pdb|4HOK|U Chain U, Crystal Structure Of Apo Ck1e
pdb|4HOK|W Chain W, Crystal Structure Of Apo Ck1e
Length = 296
Score = 202 bits (513), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 92/133 (69%), Positives = 109/133 (81%), Gaps = 2/133 (1%)
Query: 4 HEHC--RENKNLTGTARYASMNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTX 61
H+H RENKNLTGTARYAS+NTHLGIEQSRRDDLESLGYVLMYF GSLPWQGLKA T
Sbjct: 164 HQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATK 223
Query: 62 XXXXXXXXXXXVSTSIEALCRGYPTEFASYFHYCRSLRFDDKPDYAYLKRIFRDLFIREG 121
+ST IE LC+GYP+EF++Y ++CRSLRFDDKPDY+YL+++FR+LF R+G
Sbjct: 224 RQKYERISEKKMSTPIEVLCKGYPSEFSTYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQG 283
Query: 122 FQFDYVFDWTILK 134
F +DYVFDW +LK
Sbjct: 284 FSYDYVFDWNMLK 296
>pdb|2C47|A Chain A, Structure Of Casein Kinase 1 Gamma 2
pdb|2C47|B Chain B, Structure Of Casein Kinase 1 Gamma 2
pdb|2C47|C Chain C, Structure Of Casein Kinase 1 Gamma 2
pdb|2C47|D Chain D, Structure Of Casein Kinase 1 Gamma 2
Length = 313
Score = 158 bits (399), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 75/127 (59%), Positives = 89/127 (70%)
Query: 4 HEHCRENKNLTGTARYASMNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTXXX 63
H RE+K+LTGTARY S+NTHLG EQSRRDDLE+LG++ MYFLRGSLPWQGLKA T
Sbjct: 163 HIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKADTLKE 222
Query: 64 XXXXXXXXXVSTSIEALCRGYPTEFASYFHYCRSLRFDDKPDYAYLKRIFRDLFIREGFQ 123
+T IE LC +P E A+Y Y R L F +KPDY YL+++F DLF R GF
Sbjct: 223 RYQKIGDTKRATPIEVLCENFPEEMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDRSGFV 282
Query: 124 FDYVFDW 130
FDY +DW
Sbjct: 283 FDYEYDW 289
>pdb|2CMW|A Chain A, Structure Of Human Casein Kinase 1 Gamma-1 In Complex With
2-(2-Hydroxyethylamino)-6-(3-Chloroanilino)-9-
Isopropylpurine (Casp Target)
Length = 310
Score = 157 bits (398), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 74/128 (57%), Positives = 90/128 (70%)
Query: 4 HEHCRENKNLTGTARYASMNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTXXX 63
H RE+K+LTGTARY S+NTHLG EQSRRDDLE+LG++ MYFLRGSLPWQGLKA T
Sbjct: 160 HIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKADTLKE 219
Query: 64 XXXXXXXXXVSTSIEALCRGYPTEFASYFHYCRSLRFDDKPDYAYLKRIFRDLFIREGFQ 123
+T IEALC +P E A+Y Y R L F +KPDY YL+ +F DLF ++G+
Sbjct: 220 RYQKIGDTKRNTPIEALCENFPEEMATYLRYVRRLDFFEKPDYEYLRTLFTDLFEKKGYT 279
Query: 124 FDYVFDWT 131
FDY +DW
Sbjct: 280 FDYAYDWV 287
>pdb|2CHL|A Chain A, Structure Of Casein Kinase 1 Gamma 3
Length = 351
Score = 155 bits (393), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 82/161 (50%), Positives = 100/161 (62%), Gaps = 14/161 (8%)
Query: 4 HEHCRENKNLTGTARYASMNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTXXX 63
H RE+K+LTGTARY S+NTHLG EQSRRDDLE+LG++ MYFLRGSLPWQGLKA T
Sbjct: 189 HIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKADTLKE 248
Query: 64 XXXXXXXXXVSTSIEALCRGYPTEFASYFHYCRSLRFDDKPDYAYLKRIFRDLFIREGFQ 123
+T IE LC +P E A+Y Y R L F +KPDY YL+++F DLF R+G+
Sbjct: 249 RYQKIGDTKRATPIEVLCENFP-EMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDRKGYM 307
Query: 124 FDYVFDWTILKYQQSQLATPPARALVPGAGTSGAPPAIASG 164
FDY +DW QL TP G PA++S
Sbjct: 308 FDYEYDWI-----GKQLPTP--------VGAVQQDPALSSN 335
>pdb|2IZR|A Chain A, Structure Of Casein Kinase Gamma 3 In Complex With
Inhibitor
pdb|2IZS|A Chain A, Structure Of Casein Kinase Gamma 3 In Complex With
Inhibitor
pdb|2IZT|A Chain A, Structure Of Casein Kinase Gamma 3 In Complex With
Inhibitor
pdb|2IZU|A Chain A, Structure Of Casein Kinase Gamma 3 In Complex With
Inhibitor
Length = 330
Score = 155 bits (393), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 82/161 (50%), Positives = 100/161 (62%), Gaps = 14/161 (8%)
Query: 4 HEHCRENKNLTGTARYASMNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTXXX 63
H RE+K+LTGTARY S+NTHLG EQSRRDDLE+LG++ MYFLRGSLPWQGLKA T
Sbjct: 168 HIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKADTLKE 227
Query: 64 XXXXXXXXXVSTSIEALCRGYPTEFASYFHYCRSLRFDDKPDYAYLKRIFRDLFIREGFQ 123
+T IE LC +P E A+Y Y R L F +KPDY YL+++F DLF R+G+
Sbjct: 228 RYQKIGDTKRATPIEVLCENFP-EMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDRKGYM 286
Query: 124 FDYVFDWTILKYQQSQLATPPARALVPGAGTSGAPPAIASG 164
FDY +DW QL TP G PA++S
Sbjct: 287 FDYEYDWI-----GKQLPTP--------VGAVQQDPALSSN 314
>pdb|4HGL|A Chain A, Crystal Structure Of Ck1g3 With Compound 1
pdb|4HGS|A Chain A, Crystal Structure Of Ck1gs With Compound 13
Length = 330
Score = 155 bits (392), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 82/161 (50%), Positives = 100/161 (62%), Gaps = 14/161 (8%)
Query: 4 HEHCRENKNLTGTARYASMNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTXXX 63
H RE+K+LTGTARY S+NTHLG EQSRRDDLE+LG++ MYFLRGSLPWQGLKA T
Sbjct: 168 HIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKADTLKE 227
Query: 64 XXXXXXXXXVSTSIEALCRGYPTEFASYFHYCRSLRFDDKPDYAYLKRIFRDLFIREGFQ 123
+T IE LC +P E A+Y Y R L F +KPDY YL+++F DLF R+G+
Sbjct: 228 RYQKIGDTKRATPIEVLCENFP-EMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDRKGYM 286
Query: 124 FDYVFDWTILKYQQSQLATPPARALVPGAGTSGAPPAIASG 164
FDY +DW QL TP G PA++S
Sbjct: 287 FDYEYDWI-----GKQLPTP--------VGAVQQDPALSSN 314
>pdb|1EH4|A Chain A, Binary Complex Of Casein Kinase-1 From S. Pombe With An
Atp Competitive Inhibitor, Ic261
pdb|1EH4|B Chain B, Binary Complex Of Casein Kinase-1 From S. Pombe With An
Atp Competitive Inhibitor, Ic261
pdb|1CSN|A Chain A, Binary Complex Of Casein Kinase-1 With Mgatp
Length = 298
Score = 146 bits (369), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 72/130 (55%), Positives = 83/130 (63%)
Query: 4 HEHCRENKNLTGTARYASMNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTXXX 63
H RE KNL+GTARY S+NTHLG EQSRRDDLE+LG+V MYFLRGSLPWQGLKA T
Sbjct: 169 HIPYREKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAATNKQ 228
Query: 64 XXXXXXXXXVSTSIEALCRGYPTEFASYFHYCRSLRFDDKPDYAYLKRIFRDLFIREGFQ 123
ST + LC G+P EF Y HY R+L FD PDY YL+ +F + R
Sbjct: 229 KYERIGEKKQSTPLRELCAGFPEEFYKYMHYARNLAFDATPDYDYLQGLFSKVLERLNTT 288
Query: 124 FDYVFDWTIL 133
D FDW +L
Sbjct: 289 EDENFDWNLL 298
>pdb|2CSN|A Chain A, Binary Complex Of Casein Kinase-1 With Cki7
Length = 297
Score = 146 bits (368), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 72/130 (55%), Positives = 83/130 (63%)
Query: 4 HEHCRENKNLTGTARYASMNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTXXX 63
H RE KNL+GTARY S+NTHLG EQSRRDDLE+LG+V MYFLRGSLPWQGLKA T
Sbjct: 168 HIPYREKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAATNKQ 227
Query: 64 XXXXXXXXXVSTSIEALCRGYPTEFASYFHYCRSLRFDDKPDYAYLKRIFRDLFIREGFQ 123
ST + LC G+P EF Y HY R+L FD PDY YL+ +F + R
Sbjct: 228 KYERIGEKKQSTPLRELCAGFPEEFYKYMHYARNLAFDATPDYDYLQGLFSKVLERLNTT 287
Query: 124 FDYVFDWTIL 133
D FDW +L
Sbjct: 288 EDENFDWNLL 297
>pdb|2V62|A Chain A, Structure Of Vaccinia-Related Kinase 2
pdb|2V62|B Chain B, Structure Of Vaccinia-Related Kinase 2
Length = 345
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 55/115 (47%), Gaps = 5/115 (4%)
Query: 4 HEHCREN--KNLTGTARYASMNTHLGIEQSRRDDLESLGYVLMYFLRGSLPW-QGLKAGT 60
H+ +EN K GT + S++ H G+ SRR D+E LGY ++ +L G LPW Q LK
Sbjct: 209 HKQYQENPRKGHNGTIEFTSLDAHKGVALSRRSDVEILGYCMLRWLCGKLPWEQNLKDPV 268
Query: 61 XXXXXXXXXXXXVSTSI--EALCRGYPTEFASYFHYCRSLRFDDKPDYAYLKRIF 113
+ S+ A E A + SL +D+KP+Y LK+I
Sbjct: 269 AVQTAKTNLLDELPQSVLKWAPSGSSCCEIAQFLVCAHSLAYDEKPNYQALKKIL 323
>pdb|2LAV|A Chain A, Nmr Solution Structure Of Human Vaccinia-Related Kinase 1
Length = 361
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 50/103 (48%), Gaps = 5/103 (4%)
Query: 15 GTARYASMNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQ-GLKAGTXXXXXXXXXXXXV 73
GT + S++ H G+ SRR DLE LGY ++ +L G LPW+ LK +
Sbjct: 223 GTIEFTSIDAHNGVAPSRRGDLEILGYCMIQWLTGHLPWEDNLKDPKYVRDSKIRYRENI 282
Query: 74 STSIEALC---RGYPTEFASYFHYCRSLRFDDKPDYAYLKRIF 113
++ ++ C + P E A Y + L + +KP Y L+ I
Sbjct: 283 ASLMDK-CFPEKNKPGEIAKYMETVKLLDYTEKPLYENLRDIL 324
>pdb|2KTY|A Chain A, Solution Structure Of Human Vaccinia Related Kinase-1
pdb|2KUL|A Chain A, Solution Structure Of Human Vaccinia Related Kinase
1(Vrk1)
Length = 368
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 50/103 (48%), Gaps = 5/103 (4%)
Query: 15 GTARYASMNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQ-GLKAGTXXXXXXXXXXXXV 73
GT + S++ H G+ SRR DLE LGY ++ +L G LPW+ LK +
Sbjct: 223 GTIEFTSIDAHNGVAPSRRGDLEILGYCMIQWLTGHLPWEDNLKDPKYVRDSKIRYRENI 282
Query: 74 STSIEALC---RGYPTEFASYFHYCRSLRFDDKPDYAYLKRIF 113
++ ++ C + P E A Y + L + +KP Y L+ I
Sbjct: 283 ASLMDK-CFPEKNKPGEIAKYMETVKLLDYTEKPLYENLRDIL 324
>pdb|3OP5|A Chain A, Human Vaccinia-Related Kinase 1
pdb|3OP5|B Chain B, Human Vaccinia-Related Kinase 1
pdb|3OP5|C Chain C, Human Vaccinia-Related Kinase 1
pdb|3OP5|D Chain D, Human Vaccinia-Related Kinase 1
Length = 364
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 3/102 (2%)
Query: 15 GTARYASMNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQ-GLKAGTXXXXXXXXXXXXV 73
GT + S++ H G+ SRR DLE LGY ++ +L G LPW+ LK +
Sbjct: 223 GTIEFTSIDAHNGVAPSRRGDLEILGYCMIQWLTGHLPWEDNLKDPKYVRDSKIRYRENI 282
Query: 74 STSIEAL--CRGYPTEFASYFHYCRSLRFDDKPDYAYLKRIF 113
++ ++ P E A Y + L + +KP Y L+ I
Sbjct: 283 ASLMDKCFPAANAPGEIAKYMETVKLLDYTEKPLYENLRDIL 324
>pdb|2JII|A Chain A, Structure Of Vaccinia Related Kinase 3
pdb|2JII|B Chain B, Structure Of Vaccinia Related Kinase 3
Length = 352
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 44/106 (41%), Gaps = 3/106 (2%)
Query: 15 GTARYASMNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTXXXXXXXXXXXXVS 74
G + SM+ H G SRR DL+SLGY ++ +L G LPW T
Sbjct: 230 GDLEFISMDLHKGCGPSRRSDLQSLGYCMLKWLYGFLPWTNCLPNTEDIMKQKQKFVDKP 289
Query: 75 TSIEALCRGY--PTE-FASYFHYCRSLRFDDKPDYAYLKRIFRDLF 117
C + P+E Y +L +++KP YA L+ L
Sbjct: 290 GPFVGPCGHWIRPSETLQKYLKVVMALTYEEKPPYAMLRNNLEALL 335
>pdb|3KMM|A Chain A, Structure Of Human Lck Kinase With A Small Molecule
Inhibitor
Length = 288
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 8/56 (14%)
Query: 77 IEALCRGY--------PTEFASYFHYCRSLRFDDKPDYAYLKRIFRDLFIREGFQF 124
I+ L RGY P E C R +D+P + YL+ + D F QF
Sbjct: 229 IQNLERGYRMVRPDNCPEELYQLMRLCWKERPEDRPTFDYLRSVLEDFFTATEGQF 284
>pdb|3F61|A Chain A, Crystal Structure Of M. Tuberculosis Pknb
Leu33aspVAL222ASP DOUBLE MUTANT IN COMPLEX WITH ADP
Length = 311
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 21/43 (48%)
Query: 13 LTGTARYASMNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQG 55
+ GTA+Y S G R D+ SLG VL L G P+ G
Sbjct: 179 VIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTG 221
>pdb|3F69|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis Pknb
Mutant Kinase Domain In Complex With Kt5720
pdb|3F69|B Chain B, Crystal Structure Of The Mycobacterium Tuberculosis Pknb
Mutant Kinase Domain In Complex With Kt5720
Length = 311
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 21/43 (48%)
Query: 13 LTGTARYASMNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQG 55
+ GTA+Y S G R D+ SLG VL L G P+ G
Sbjct: 179 VIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTG 221
>pdb|3ORI|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 1)
pdb|3ORI|B Chain B, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 1)
pdb|3ORI|C Chain C, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 1)
pdb|3ORI|D Chain D, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 1)
pdb|3ORK|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 2)
pdb|3ORL|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 3)
pdb|3ORO|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 4)
pdb|3ORP|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 5)
pdb|3ORT|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 6)
Length = 311
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 21/43 (48%)
Query: 13 LTGTARYASMNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQG 55
+ GTA+Y S G R D+ SLG VL L G P+ G
Sbjct: 179 VIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTG 221
>pdb|1MRU|A Chain A, Intracellular SerTHR PROTEIN KINASE DOMAIN OF
Mycobacterium Tuberculosis Pknb.
pdb|1MRU|B Chain B, Intracellular SerTHR PROTEIN KINASE DOMAIN OF
Mycobacterium Tuberculosis Pknb
Length = 311
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 21/43 (48%)
Query: 13 LTGTARYASMNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQG 55
+ GTA+Y S G R D+ SLG VL L G P+ G
Sbjct: 179 VIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTG 221
>pdb|3ORM|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain D76a Mutant
Length = 311
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 21/43 (48%)
Query: 13 LTGTARYASMNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQG 55
+ GTA+Y S G R D+ SLG VL L G P+ G
Sbjct: 179 VIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTG 221
>pdb|1O6Y|A Chain A, Catalytic Domain Of Pknb Kinase From Mycobacterium
Tuberculosis
pdb|2FUM|A Chain A, Catalytic Domain Of Protein Kinase Pknb From Mycobacterium
Tuberculosis In Complex With Mitoxantrone
pdb|2FUM|B Chain B, Catalytic Domain Of Protein Kinase Pknb From Mycobacterium
Tuberculosis In Complex With Mitoxantrone
pdb|2FUM|C Chain C, Catalytic Domain Of Protein Kinase Pknb From Mycobacterium
Tuberculosis In Complex With Mitoxantrone
pdb|2FUM|D Chain D, Catalytic Domain Of Protein Kinase Pknb From Mycobacterium
Tuberculosis In Complex With Mitoxantrone
Length = 299
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 21/43 (48%)
Query: 13 LTGTARYASMNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQG 55
+ GTA+Y S G R D+ SLG VL L G P+ G
Sbjct: 196 VIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTG 238
>pdb|2JC5|A Chain A, Apurinic Apyrimidinic (Ap) Endonuclease (Nape) From
Neisseria Meningitidis
pdb|4B5F|A Chain A, Substrate Bound Neisseria Ap Endonuclease In Absence Of
Metal Ions (Crystal Form 1)
pdb|4B5G|A Chain A, Substrate Bound Neisseria Ap Endonuclease In Absence Of
Metal Ions (Crystal Form 2)
pdb|4B5G|B Chain B, Substrate Bound Neisseria Ap Endonuclease In Absence Of
Metal Ions (Crystal Form 2)
pdb|4B5G|C Chain C, Substrate Bound Neisseria Ap Endonuclease In Absence Of
Metal Ions (Crystal Form 2)
pdb|4B5I|A Chain A, Product Complex Of Neisseria Ap Endonuclease In Presence
Of Metal Ions
pdb|4B5J|A Chain A, Neisseria Ap Endonuclease Bound To The Substrate With An
Orphan Adenine Base
pdb|4B5M|A Chain A, Neisseria Ap Endonuclease Bound To The Substrate With A
Cytosine Orphan Base
pdb|4B5M|B Chain B, Neisseria Ap Endonuclease Bound To The Substrate With A
Cytosine Orphan Base
pdb|4B5M|C Chain C, Neisseria Ap Endonuclease Bound To The Substrate With A
Cytosine Orphan Base
Length = 259
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 11/61 (18%)
Query: 1 MIGHEHCRENKNLTGTARYA-----SMNTHLGIEQSRRD------DLESLGYVLMYFLRG 49
M GH HC E + +G A Y+ ++ +GIE+ R+ D L + +Y G
Sbjct: 54 MHGHWHCAEKRGYSGVAVYSKRKPDNVQIGMGIEEFDREGRFVRCDFGRLSVISLYLPSG 113
Query: 50 S 50
S
Sbjct: 114 S 114
>pdb|4B5H|A Chain A, Substate Bound Inactive Mutant Of Neisseria Ap
Endonuclease In Presence Of Metal Ions
Length = 259
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 11/61 (18%)
Query: 1 MIGHEHCRENKNLTGTARYA-----SMNTHLGIEQSRRD------DLESLGYVLMYFLRG 49
M GH HC E + +G A Y+ ++ +GIE+ R+ D L + +Y G
Sbjct: 54 MHGHWHCAEKRGYSGVAVYSKRKPDNVQIGMGIEEFDREGRFVRCDFGRLSVISLYLPSG 113
Query: 50 S 50
S
Sbjct: 114 S 114
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,970,030
Number of Sequences: 62578
Number of extensions: 272675
Number of successful extensions: 597
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 566
Number of HSP's gapped (non-prelim): 25
length of query: 317
length of database: 14,973,337
effective HSP length: 99
effective length of query: 218
effective length of database: 8,778,115
effective search space: 1913629070
effective search space used: 1913629070
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)