BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021074
(317 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1VJF|A Chain A, Crystal Structure Of A Putative Dna-Binding Protein
(Cc_0111) From Caulobacter Crescentus Cb15 At 1.62 A
Resolution
Length = 180
Score = 111 bits (277), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 60/168 (35%), Positives = 91/168 (54%), Gaps = 2/168 (1%)
Query: 4 SKDQLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSAL 63
++ L A ++ +HP V VE + GG +KNLFLKD K + +++SAL
Sbjct: 15 TRADLFAFFDAHGVDHKTLDHPPVFRVEEGLEIKAAXPGGHTKNLFLKDAKGQLWLISAL 74
Query: 64 ADTKVDMKVLSQRLGLGKGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKG 123
+T +D+K L +G G+ L P+E LE L V GSVT F L+N++ + V +LDK
Sbjct: 75 GETTIDLKKLHHVIGSGR--LSFGPQEXXLETLGVTPGSVTAFGLINDTEKRVRFVLDKA 132
Query: 124 FKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLEANPAVG 171
+ FHPL ND + +++ L +FL ++G +P VD A VG
Sbjct: 133 LADSDPVNFHPLKNDATTAVSQAGLRRFLAALGVEPXIVDFAAXEVVG 180
>pdb|1VKI|A Chain A, Crystal Structure Of A Putative Oligo-Nucleotide Binding
Protein (Atu3699, Agr_l_2275) From Agrobacterium
Tumefaciens Str. C58 At 1.60 A Resolution
pdb|1VKI|B Chain B, Crystal Structure Of A Putative Oligo-Nucleotide Binding
Protein (Atu3699, Agr_l_2275) From Agrobacterium
Tumefaciens Str. C58 At 1.60 A Resolution
Length = 181
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 81/153 (52%), Gaps = 1/153 (0%)
Query: 7 QLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALADT 66
+L L L I + +H V TV I GG +KNLF+KDKK ++++++ +
Sbjct: 23 ELFEFLDGLGISHTTKQHEPVFTVAESQSLRDLIPGGHTKNLFVKDKKDQYFVLTVEENA 82
Query: 67 KVDMKVLSQRLGLGKGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKA 126
VD+K + + +G + E MLE L V GSVT F +N++AR V +LD
Sbjct: 83 VVDLKSVHKTIG-AASRVSFGRPEKMLEYLGVVPGSVTVFGAINDTARQVTFVLDSDLLE 141
Query: 127 QERCFFHPLSNDMSISLNTNDLDKFLKSIGRDP 159
E HPLSND + ++ + DL +FL++ G P
Sbjct: 142 NELVNGHPLSNDQTTTIASKDLIRFLEATGHAP 174
>pdb|2JIW|A Chain A, Bacteroides Thetaiotaomicron Gh84 O-glcnacase In Complex
With 2-acetylamino-2-deoxy-1-epivalienamine
pdb|2JIW|B Chain B, Bacteroides Thetaiotaomicron Gh84 O-glcnacase In Complex
With 2-acetylamino-2-deoxy-1-epivalienamine
Length = 716
Score = 31.2 bits (69), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 27/43 (62%), Gaps = 4/43 (9%)
Query: 260 AKLLSEVCEKIFYV--DLSQLVICCTHFKKSVMFSLPLRNYLC 300
A+LL+ + EK V D++QLV+C T + KS +S P NYL
Sbjct: 255 AELLNYIDEKFAQVKPDINQLVMCPTEYNKS--WSNPNGNYLT 295
>pdb|2J4G|A Chain A, Bacteroides Thetaiotaomicron Gh84 O-Glcnacase In Complex
With N-Butyl-Thiazoline Inhibitor
pdb|2J4G|B Chain B, Bacteroides Thetaiotaomicron Gh84 O-Glcnacase In Complex
With N-Butyl-Thiazoline Inhibitor
Length = 715
Score = 31.2 bits (69), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 27/43 (62%), Gaps = 4/43 (9%)
Query: 260 AKLLSEVCEKIFYV--DLSQLVICCTHFKKSVMFSLPLRNYLC 300
A+LL+ + EK V D++QLV+C T + KS +S P NYL
Sbjct: 254 AELLNYIDEKFAQVKPDINQLVMCPTEYNKS--WSNPNGNYLT 294
>pdb|2CHO|A Chain A, Bacteroides Thetaiotaomicron Hexosaminidase With O-
Glcnacase Activity
pdb|2CHO|B Chain B, Bacteroides Thetaiotaomicron Hexosaminidase With O-
Glcnacase Activity
Length = 716
Score = 31.2 bits (69), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 27/43 (62%), Gaps = 4/43 (9%)
Query: 260 AKLLSEVCEKIFYV--DLSQLVICCTHFKKSVMFSLPLRNYLC 300
A+LL+ + EK V D++QLV+C T + KS +S P NYL
Sbjct: 255 AELLNYIDEKFAQVKPDINQLVMCPTEYNKS--WSNPNGNYLT 295
>pdb|2J47|A Chain A, Bacteroides Thetaiotaomicron Gh84 O-Glcnacase In Complex
With A Imidazole-Pugnac Hybrid Inhibitor
pdb|2W4X|A Chain A, Btgh84 In Complex With Stz
pdb|2W66|A Chain A, Btgh84 In Complex With Hq602
pdb|2W66|B Chain B, Btgh84 In Complex With Hq602
pdb|2W67|A Chain A, Btgh84 In Complex With Fma34
pdb|2W67|B Chain B, Btgh84 In Complex With Fma34
pdb|2WCA|A Chain A, Btgh84 In Complex With N-Butyl Pugnac
pdb|2XJ7|A Chain A, Btgh84 In Complex With 6-Acetamido-6-Deoxy-Castanospermine
pdb|2XJ7|B Chain B, Btgh84 In Complex With 6-Acetamido-6-Deoxy-Castanospermine
pdb|2XM1|A Chain A, Btgh84 In Complex With N-Acetyl Gluconolactam
pdb|2XM1|B Chain B, Btgh84 In Complex With N-Acetyl Gluconolactam
pdb|2XM2|A Chain A, Btgh84 In Complex With Lognac
pdb|2XM2|B Chain B, Btgh84 In Complex With Lognac
Length = 716
Score = 31.2 bits (69), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 27/43 (62%), Gaps = 4/43 (9%)
Query: 260 AKLLSEVCEKIFYV--DLSQLVICCTHFKKSVMFSLPLRNYLC 300
A+LL+ + EK V D++QLV+C T + KS +S P NYL
Sbjct: 255 AELLNYIDEKFAQVKPDINQLVMCPTEYNKS--WSNPNGNYLT 295
>pdb|2WZI|A Chain A, Btgh84 D243n In Complex With 5f-Oxazoline
pdb|2WZI|B Chain B, Btgh84 D243n In Complex With 5f-Oxazoline
Length = 737
Score = 30.8 bits (68), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 27/43 (62%), Gaps = 4/43 (9%)
Query: 260 AKLLSEVCEKIFYV--DLSQLVICCTHFKKSVMFSLPLRNYLC 300
A+LL+ + EK V D++QLV+C T + KS +S P NYL
Sbjct: 276 AELLNYIDEKFAQVKPDINQLVMCPTEYNKS--WSNPNGNYLT 316
>pdb|2WZH|A Chain A, Btgh84 D242n In Complex With Meumb-Derived Oxazoline
pdb|4AIU|A Chain A, A Complex Structure Of Btgh84
Length = 737
Score = 30.8 bits (68), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 27/43 (62%), Gaps = 4/43 (9%)
Query: 260 AKLLSEVCEKIFYV--DLSQLVICCTHFKKSVMFSLPLRNYLC 300
A+LL+ + EK V D++QLV+C T + KS +S P NYL
Sbjct: 276 AELLNYIDEKFAQVKPDINQLVMCPTEYNKS--WSNPNGNYLT 316
>pdb|2VVN|A Chain A, Btgh84 In Complex With Nh-Butylthiazoline
pdb|2VVN|B Chain B, Btgh84 In Complex With Nh-Butylthiazoline
pdb|2VVS|A Chain A, Btgh84 Structure In Complex With Pugnac
pdb|2X0H|A Chain A, Btgh84 Michaelis Complex
pdb|2X0H|B Chain B, Btgh84 Michaelis Complex
pdb|4AIS|A Chain A, A Complex Structure Of Btgh84
pdb|4AIS|B Chain B, A Complex Structure Of Btgh84
Length = 737
Score = 30.8 bits (68), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 27/43 (62%), Gaps = 4/43 (9%)
Query: 260 AKLLSEVCEKIFYV--DLSQLVICCTHFKKSVMFSLPLRNYLC 300
A+LL+ + EK V D++QLV+C T + KS +S P NYL
Sbjct: 276 AELLNYIDEKFAQVKPDINQLVMCPTEYNKS--WSNPNGNYLT 316
>pdb|2CHN|A Chain A, Bacteroides Thetaiotaomicron Hexosaminidase With O-
Glcnacase Activity - Nag-Thiazoline Complex
pdb|2CHN|B Chain B, Bacteroides Thetaiotaomicron Hexosaminidase With O-
Glcnacase Activity - Nag-Thiazoline Complex
Length = 716
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 26/43 (60%), Gaps = 4/43 (9%)
Query: 260 AKLLSEVCEKIFYV--DLSQLVICCTHFKKSVMFSLPLRNYLC 300
A+LL+ + EK V D++QLV C T + KS +S P NYL
Sbjct: 255 AELLNYIDEKFAQVKPDINQLVXCPTEYNKS--WSNPNGNYLT 295
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,841,959
Number of Sequences: 62578
Number of extensions: 351698
Number of successful extensions: 866
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 862
Number of HSP's gapped (non-prelim): 16
length of query: 317
length of database: 14,973,337
effective HSP length: 99
effective length of query: 218
effective length of database: 8,778,115
effective search space: 1913629070
effective search space used: 1913629070
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)