Query 021074
Match_columns 317
No_of_seqs 200 out of 1391
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 12:22:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021074.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021074hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vjf_A DNA-binding protein, pu 100.0 3.3E-36 1.1E-40 265.9 17.2 166 3-170 14-179 (180)
2 1vki_A Hypothetical protein AT 100.0 1.2E-35 4.3E-40 262.4 20.0 163 2-166 18-181 (181)
3 3op6_A Uncharacterized protein 100.0 3.1E-33 1E-37 239.9 15.6 145 2-153 1-146 (152)
4 2z0x_A Putative uncharacterize 100.0 6.6E-32 2.2E-36 231.9 18.2 153 1-166 3-157 (158)
5 1wdv_A Hypothetical protein AP 100.0 1E-30 3.4E-35 222.3 18.4 148 6-165 3-151 (152)
6 1dbu_A HI1434, cysteinyl-tRNA( 100.0 8.2E-30 2.8E-34 218.5 17.0 151 6-167 2-158 (158)
7 2dxa_A Protein YBAK; trans-edi 100.0 3.9E-29 1.3E-33 216.7 14.2 150 6-166 9-164 (166)
8 3mem_A Putative signal transdu 99.9 2.1E-23 7.3E-28 207.1 10.3 135 1-158 2-139 (457)
9 2j3l_A Prolyl-tRNA synthetase; 99.3 8.8E-11 3E-15 118.8 17.3 108 25-139 258-365 (572)
10 1hmj_A RPB5, protein (subunit 61.7 4.1 0.00014 31.3 2.2 43 3-47 15-57 (78)
11 4ayb_H DNA-directed RNA polyme 57.4 12 0.0004 29.0 4.1 60 3-64 23-84 (84)
12 1eik_A RNA polymerase subunit 55.6 5.7 0.00019 30.4 2.0 43 3-47 17-59 (77)
13 3gkn_A Bacterioferritin comigr 25.5 2.1E+02 0.0072 22.2 7.0 54 4-61 79-141 (163)
14 3h0g_E DNA-directed RNA polyme 24.5 53 0.0018 29.4 3.4 43 3-47 151-193 (210)
15 3gkx_A Putative ARSC family re 24.0 53 0.0018 26.1 3.1 40 5-44 17-60 (120)
16 3l78_A Regulatory protein SPX; 20.4 1.1E+02 0.0039 23.9 4.4 34 5-38 13-47 (120)
17 3fz4_A Putative arsenate reduc 20.2 64 0.0022 25.5 2.8 33 5-37 16-49 (120)
No 1
>1vjf_A DNA-binding protein, putative; structural genomics, joint center for S genomics, JCSG, protein structure initiative, PSI; HET: MSE; 1.62A {Caulobacter crescentus CB15} SCOP: d.116.1.1
Probab=100.00 E-value=3.3e-36 Score=265.93 Aligned_cols=166 Identities=36% Similarity=0.636 Sum_probs=157.7
Q ss_pred CcHHHHHHHHHhCCCCeEEEEcCCCCCHHHHHHHhCCCCCceeeEEEEEecCCcEEEEEEecCCCCcHHHHHHHhCCCCC
Q 021074 3 YSKDQLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALADTKVDMKVLSQRLGLGKG 82 (317)
Q Consensus 3 ~s~e~V~~~L~klgI~ye~veHp~~~TieeaAk~lg~~~~qivKtLvLkdkkg~~vLVVl~gD~kVDlkKLak~LG~kr~ 82 (317)
|+.++++++|+++||+|+.++||+..|++++++++|+++++++|||+|++++++||++++|+|+++|++++++.+|.+
T Consensus 14 ~~~~~v~~~L~~~~i~~~~~~~p~~~T~ee~a~~l~~~~~~~~KtLvl~~~~~~~~lvvv~gd~~ld~kkl~~~lg~k-- 91 (180)
T 1vjf_A 14 KTRADLFAFFDAHGVDHKTLDHPPVFRVEEGLEIKAAMPGGHTKNLFLKDAKGQLWLISALGETTIDLKKLHHVIGSG-- 91 (180)
T ss_dssp CCHHHHHHHHHHHTCCCEEEECCCCCSHHHHHHHHHHSCSEEEEEEEEEETTSCEEEEEEETTCCCCTTTHHHHHTCS--
T ss_pred chHHHHHHHHHHCCCCEEEEecCCCCCHHHHHHHcCCCccceeeEEEEEeCCCCEEEEEEeCCCccCHHHHHHHhCCC--
Confidence 578999999999999999999999999999999999999999999999997677999999999999999999999986
Q ss_pred ccccCCHHHHHHhcCCCceecCCCcccCCCCCCeEEEEecccccCCeEEeecCCCcceEEecHHHHHHHHHhcCCCCEEE
Q 021074 83 GLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYV 162 (317)
Q Consensus 83 ~Lr~AseEeL~e~lG~~pG~VsPfGL~nd~~~~V~ViID~sL~~~~~I~~h~G~n~~tI~Is~~DL~kll~a~g~~p~~V 162 (317)
+++||+++++.++|||.+|+|+|||+.++..+.+++|+|+++...+.|++|+|.++.+|.|+++||.+++++.+|++.||
T Consensus 92 ~l~~a~~eel~~~tG~~~G~v~P~Gl~~~~~~~v~vviD~sl~~~~~i~~~ag~~~~~i~l~~~dL~~~~~~~~~~~~~v 171 (180)
T 1vjf_A 92 RLSFGPQEMMLETLGVTPGSVTAFGLINDTEKRVRFVLDKALADSDPVNFHPLKNDATTAVSQAGLRRFLAALGVEPMIV 171 (180)
T ss_dssp CEEECCHHHHHHHHCCCTTCCCGGGGGGCTTCCEEEEEEHHHHTCSSEEECSSSTTEEEEECHHHHHHHHHHTTCCCEEE
T ss_pred CeeeCCHHHHHHHhCCCCceeCccccCCCCCCccEEEEchHHhcCCcEEEeCCCCCeEEEECHHHHHHHHHhcCCCeEEE
Confidence 79999999999999999999999999876566799999999999999999999999999999999999999999999999
Q ss_pred EccCCCCC
Q 021074 163 DLEANPAV 170 (317)
Q Consensus 163 D~sa~~~~ 170 (317)
||+++..+
T Consensus 172 ~~~~~~~~ 179 (180)
T 1vjf_A 172 DFAAMEVV 179 (180)
T ss_dssp ETTTTEEC
T ss_pred ECcccccC
Confidence 99986543
No 2
>1vki_A Hypothetical protein ATU3699; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.60A {Agrobacterium tumefaciens str} SCOP: d.116.1.1
Probab=100.00 E-value=1.2e-35 Score=262.40 Aligned_cols=163 Identities=33% Similarity=0.526 Sum_probs=155.0
Q ss_pred CCcHHHHHHHHHhCCCCeEEEEcCCCCCHHHHHHHhCCCCCceeeEEEEEecCCcEEEEEEecCCCCcHHHHHHHhC-CC
Q 021074 2 AYSKDQLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALADTKVDMKVLSQRLG-LG 80 (317)
Q Consensus 2 ~~s~e~V~~~L~klgI~ye~veHp~~~TieeaAk~lg~~~~qivKtLvLkdkkg~~vLVVl~gD~kVDlkKLak~LG-~k 80 (317)
.|+.++++++|+++||+|+.++||+..|++++|+++|+++++++|||++++++++||++++|||+++|++|+++.+| .+
T Consensus 18 ~~~~~~~~~~L~~~~i~~~~~~~p~~~T~ee~a~~l~~~~~~~~KtLvl~~~~~~~vlvvv~gd~~ld~kkl~~~lg~~k 97 (181)
T 1vki_A 18 RKTATELFEFLDGLGISHTTKQHEPVFTVAESQSLRDLIPGGHTKNLFVKDKKDQYFVLTVEENAVVDLKSVHKTIGAAS 97 (181)
T ss_dssp CCCHHHHHHHHHHHTCCCEEEECCCCCSHHHHHHHHTTSCSEEEEEEEEECTTCCEEEEEEETTCCBCTTTHHHHHTCSS
T ss_pred chHHHHHHHHHHHCCCCeEEEECCCCCCHHHHHHHcCCCccceeEEEEEEEcCCeEEEEEEeCCCccCHHHHHHHhCCCC
Confidence 46788999999999999999999999999999999999999999999999976789999999999999999999999 55
Q ss_pred CCccccCCHHHHHHhcCCCceecCCCcccCCCCCCeEEEEecccccCCeEEeecCCCcceEEecHHHHHHHHHhcCCCCE
Q 021074 81 KGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPA 160 (317)
Q Consensus 81 r~~Lr~AseEeL~e~lG~~pG~VsPfGL~nd~~~~V~ViID~sL~~~~~I~~h~G~n~~tI~Is~~DL~kll~a~g~~p~ 160 (317)
+++||+++++.++|||.+|+|+|||+.+|..+++++|+|+++...+.|++|+|.++.++.|+++||.+++++.||++.
T Consensus 98 --~l~~a~~eel~~~tG~~~G~v~P~Gl~~d~~~~v~vviD~sl~~~~~i~~~ag~~~~~i~l~~~dL~~~~~~~~~~~~ 175 (181)
T 1vki_A 98 --RVSFGRPEKMLEYLGVVPGSVTVFGAINDTARQVTFVLDSDLLENELVNGHPLSNDQTTTIASKDLIRFLEATGHAPL 175 (181)
T ss_dssp --SCEECCHHHHHHHHCCCTTCCCGGGGGGCTTCCEEEEEETTGGGSSEEEECSSSTTEEEEEEHHHHHHHHHHTTCCCE
T ss_pred --CeEECCHHHHHHHHCCCcceECcceeccCCCCCCEEEEchHHhcCCeEEEeCCCCCeEEEECHHHHHHHHHhcCCCeE
Confidence 799999999999999999999999997765568999999999999999999999999999999999999999999999
Q ss_pred EEEccC
Q 021074 161 YVDLEA 166 (317)
Q Consensus 161 ~VD~sa 166 (317)
||||+.
T Consensus 176 ~v~~~~ 181 (181)
T 1vki_A 176 VLKVSE 181 (181)
T ss_dssp EECCBC
T ss_pred EEeCCC
Confidence 999963
No 3
>3op6_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE; 2.00A {Legionella pneumophila subsp}
Probab=100.00 E-value=3.1e-33 Score=239.87 Aligned_cols=145 Identities=21% Similarity=0.332 Sum_probs=134.6
Q ss_pred CCcHHHHHHHHHhCCCCeEEEEcCCCCCHHHHHHHhCCCCCceeeEEEEEecCCcEEEEEEecCCCCcHHHHHHHhCCCC
Q 021074 2 AYSKDQLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALADTKVDMKVLSQRLGLGK 81 (317)
Q Consensus 2 ~~s~e~V~~~L~klgI~ye~veHp~~~TieeaAk~lg~~~~qivKtLvLkdkkg~~vLVVl~gD~kVDlkKLak~LG~kr 81 (317)
||+.++++++|+++||+|+.++||+..|++++|+++|+++++++|||+++++ +++|++++|+|+++|++|+++.+|.+
T Consensus 1 ~M~~~~v~~~L~~~~i~~~~~~~~~~~t~~~~a~~lg~~~~~~~Ktlv~~~~-~~~~lvvv~gd~~ld~~kl~~~lg~~- 78 (152)
T 3op6_A 1 GMPVKKLKQFLDSHKIKYLSIAHSPAYTAQEIAASAHVSGKQLAKTVIIKMD-GRLAMVVLPASDHITFMKLKEAIGTS- 78 (152)
T ss_dssp -CHHHHHHHHHHHTTCCEEEEEECTTCCHHHHC----CCSSCCEEEEEEEET-TEEEEEEEETTCCCCHHHHHHHHSCS-
T ss_pred CCcHHHHHHHHHHcCCceEEEEcCCCCCHHHHHHHcCCChhheEEEEEEEEC-CeEEEEEECCCCeECHHHHHHHhCCC-
Confidence 6889999999999999999999999999999999999999999999999996 57999999999999999999999986
Q ss_pred CccccCCHHHHHHhc-CCCceecCCCcccCCCCCCeEEEEecccccCCeEEeecCCCcceEEecHHHHHHHHH
Q 021074 82 GGLRMAPEETMLEIL-KVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLK 153 (317)
Q Consensus 82 ~~Lr~AseEeL~e~l-G~~pG~VsPfGL~nd~~~~V~ViID~sL~~~~~I~~h~G~n~~tI~Is~~DL~kll~ 153 (317)
+++||+++++.+.+ ||.+|+|+|||+.+ ++++|+|+++...+.||+|+|+++.++.|+++||.++++
T Consensus 79 -~~~~a~~e~l~~~~tG~~~G~v~P~g~~~----~~~v~~D~~l~~~~~i~~~ag~~~~~i~l~~~dl~~~~~ 146 (152)
T 3op6_A 79 -DLELATESEFEGKFAECDVGAMPPFGNLY----GLPVLVSTKLSAQDNILFNAGSHSELMQLSFGDFEKLVK 146 (152)
T ss_dssp -CEEECCGGGTGGGCTTSCTTCCCSCGGGG----TCCEEEEHHHHTSSEEEEECSSSSEEEEEEHHHHHHHHC
T ss_pred -ceeeCCHHHHHHHhcCCCcCCCCCCCCCc----CCeEEEehhhccCCeEEEeCCCCCcEEEECHHHHHHHhc
Confidence 79999999999885 99999999999985 699999999999999999999999999999999999997
No 4
>2z0x_A Putative uncharacterized protein TTHA1699; protein-cyssa complex, translation, structural genomics, NPPSFA; HET: 5CA; 1.64A {Thermus thermophilus} PDB: 2z0k_A* 2cx5_A* 3rij_A 3ri0_A
Probab=100.00 E-value=6.6e-32 Score=231.87 Aligned_cols=153 Identities=18% Similarity=0.228 Sum_probs=143.7
Q ss_pred CCCcHHHHHHHHHhCCCCe-EEEEcCC-CCCHHHHHHHhCCCCCceeeEEEEEecCCcEEEEEEecCCCCcHHHHHHHhC
Q 021074 1 MAYSKDQLLARLKDLQIEF-SQYEHPA-VMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALADTKVDMKVLSQRLG 78 (317)
Q Consensus 1 M~~s~e~V~~~L~klgI~y-e~veHp~-~~TieeaAk~lg~~~~qivKtLvLkdkkg~~vLVVl~gD~kVDlkKLak~LG 78 (317)
|.|+.++++++|+++||+| +.++||+ ..|++++|+++|+++++++|||+++++ ++++++++|+|+++|++|+++.+|
T Consensus 3 ~~m~~~~~~~~L~~~~i~~~~~~~~p~~~~t~~e~a~~lg~~~~~~~Ktlv~~~~-~~~~lvvv~gd~~ld~~kl~~~lg 81 (158)
T 2z0x_A 3 LSPSARRVQGALETRGFGHLKVVELPASTRTAKEAAQAVGAEVGQIVKSLVFVGE-KGAYLFLVSGKNRLDLGKATRLVG 81 (158)
T ss_dssp CCHHHHHHHHHHHHTTCTTSCEEECSSCCSSHHHHHHHHTCCGGGEEEEEEEEES-SSEEEEEEETTCCBCHHHHHHHHT
T ss_pred cchhHHHHHHHHHHcCCCCCEEEEcCCCCCCHHHHHHHcCCCHHHEEEEEEEEeC-CcEEEEEEECchhhCHHHHHHHhC
Confidence 5677899999999999999 9999995 999999999999999999999999984 679999999999999999999999
Q ss_pred CCCCccccCCHHHHHHhcCCCceecCCCcccCCCCCCeEEEEecccccCCeEEeecCCCcceEEecHHHHHHHHHhcCCC
Q 021074 79 LGKGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRD 158 (317)
Q Consensus 79 ~kr~~Lr~AseEeL~e~lG~~pG~VsPfGL~nd~~~~V~ViID~sL~~~~~I~~h~G~n~~tI~Is~~DL~kll~a~g~~ 158 (317)
. +++||+++++.++|||.+|+|+|||+.+ ++++|+|+++...+.||+|+|.++.++.|+++||.++++
T Consensus 82 ~---~l~~a~~e~~~~~tG~~~G~v~P~gl~~----~v~v~iD~~l~~~~~i~~~ag~~~~~i~l~~~dl~~~~~----- 149 (158)
T 2z0x_A 82 G---PLRQATPEEVRELTGFAIGGVPPVGHNT----PLPAYLDEDLLGYPEVWAAGGTPRALFRATPKELLALTG----- 149 (158)
T ss_dssp S---CEEECCHHHHHHHHSSCTTSCCSSCCSS----CCCEEEEGGGGGSSCEEEECSSTTEEEEECHHHHHHHHC-----
T ss_pred C---CcEECCHHHHHHHhCCCCccCCcCCCCC----CCcEEEEhHHhcCCcEEEECCCCCEEEEECHHHHHHHhC-----
Confidence 7 4999999999999999999999999973 799999999999999999999999999999999999987
Q ss_pred CEEEEccC
Q 021074 159 PAYVDLEA 166 (317)
Q Consensus 159 p~~VD~sa 166 (317)
..|+|++.
T Consensus 150 ~~~~di~~ 157 (158)
T 2z0x_A 150 AQVADLKE 157 (158)
T ss_dssp CEEECCBC
T ss_pred CEEEEeec
Confidence 46888874
No 5
>1wdv_A Hypothetical protein APE2540; structural genomics, unknown function, riken structural genomics/proteomics initiative, RSGI; 1.70A {Aeropyrum pernix} SCOP: d.116.1.1
Probab=99.97 E-value=1e-30 Score=222.29 Aligned_cols=148 Identities=17% Similarity=0.287 Sum_probs=139.8
Q ss_pred HHHHHHHHhCCCCeEEEEcCCC-CCHHHHHHHhCCCCCceeeEEEEEecCCcEEEEEEecCCCCcHHHHHHHhCCCCCcc
Q 021074 6 DQLLARLKDLQIEFSQYEHPAV-MTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALADTKVDMKVLSQRLGLGKGGL 84 (317)
Q Consensus 6 e~V~~~L~klgI~ye~veHp~~-~TieeaAk~lg~~~~qivKtLvLkdkkg~~vLVVl~gD~kVDlkKLak~LG~kr~~L 84 (317)
++++++|+++||+|+.++||+. .|++++|+++|+++++++|||++++++++++++++|||+++|++|+++.+| + ++
T Consensus 3 ~~~~~~L~~~~i~~~~~~~p~~~~t~~~~a~~lg~~~~~~~Ktlv~~~~~~~~~l~vv~gd~~ld~~kl~~~~g-~--~l 79 (152)
T 1wdv_A 3 EKVEEWIKARGLTWRLLIMQKPTRTVAEAAALLGVSESEIVKTLIVLDNAGGVYAVVIPGDKRLNINSMKELAG-K--PV 79 (152)
T ss_dssp CHHHHHHHHHTCCCEEEECSSCCSSHHHHHHHHTSCGGGBEEEEEEEETTSCEEEEEEETTCCBCHHHHHHHHT-S--CE
T ss_pred HHHHHHHHHCCCCcEEEEcCCCCCCHHHHHHHcCCCHHHeEEEEEEEeCCCcEEEEEEECchhhCHHHHHHHHC-C--Cc
Confidence 5799999999999999999998 999999999999999999999999866789999999999999999999999 4 79
Q ss_pred ccCCHHHHHHhcCCCceecCCCcccCCCCCCeEEEEecccccCCeEEeecCCCcceEEecHHHHHHHHHhcCCCCEEEEc
Q 021074 85 RMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDL 164 (317)
Q Consensus 85 r~AseEeL~e~lG~~pG~VsPfGL~nd~~~~V~ViID~sL~~~~~I~~h~G~n~~tI~Is~~DL~kll~a~g~~p~~VD~ 164 (317)
+||+++++.++|||.+|+|+|||+.+ ++++|+|+++...+.|++++|.++.++.++++||.+++. ..|+|+
T Consensus 80 ~~a~~~e~~~~tG~~~G~v~P~g~~~----~v~v~~D~~l~~~~~v~~~~g~~~~~~~v~~~dl~~~~~-----~~~~di 150 (152)
T 1wdv_A 80 RLARANEVVELTGYPVGGVPPVALPP----NIVLVVDRILLSRKKVYGGGGRENALLEFSPRELVEATG-----AVVADV 150 (152)
T ss_dssp EECCHHHHHHHHSSCGGGCCSSSCCT----TCEEEEEGGGTTCSCEEEECSSTTEEEEECHHHHHHHHT-----CEEECC
T ss_pred eeCCHHHHHHHhCCCCCCCCcCCCCC----CCcEEEehHHhcCCeEEEcCCCCCeEEEECHHHHHHHhC-----CEEEee
Confidence 99999999999999999999999974 799999999999999999999999999999999999986 457887
Q ss_pred c
Q 021074 165 E 165 (317)
Q Consensus 165 s 165 (317)
+
T Consensus 151 ~ 151 (152)
T 1wdv_A 151 S 151 (152)
T ss_dssp B
T ss_pred e
Confidence 5
No 6
>1dbu_A HI1434, cysteinyl-tRNA(Pro) deacylase; structural genomics, YBAK, structure 2 function project, S2F, hydrolase; HET: MSE; 1.80A {Haemophilus influenzae} SCOP: d.116.1.1 PDB: 1dbx_A
Probab=99.97 E-value=8.2e-30 Score=218.53 Aligned_cols=151 Identities=15% Similarity=0.241 Sum_probs=136.0
Q ss_pred HHHHHHHHhCCCCeEEE--EcCCC--CCHHHHHHHhCCCCCceeeEEEEEe--cCCcEEEEEEecCCCCcHHHHHHHhCC
Q 021074 6 DQLLARLKDLQIEFSQY--EHPAV--MTVEAQAKYVGNIGGGLSKNLFLKD--KKHRFYIVSALADTKVDMKVLSQRLGL 79 (317)
Q Consensus 6 e~V~~~L~klgI~ye~v--eHp~~--~TieeaAk~lg~~~~qivKtLvLkd--kkg~~vLVVl~gD~kVDlkKLak~LG~ 79 (317)
++++++|+++||+|+++ +|++. .|++++|+.+|+++++++|||+++. ++++++++++|+|+++|++|+++.+|.
T Consensus 2 t~~~~~L~~~~i~~~~~~~~~~~~~~~t~~e~a~~l~~~~~~~~Ktl~~~~~~~~~~~~lvv~~gd~~ld~~kl~~~~g~ 81 (158)
T 1dbu_A 2 TPAIDLLKKQKIPFILHTYDHDPNNQHFGDEAAEKLGIDPNRSFKTLLVAENGDQKKLACFVLATANMLNLKKAAKSIGV 81 (158)
T ss_dssp CHHHHHHHHHTCCCEEEECCCCCC-----CHHHHHHTCCGGGEEEEEEEEETTCTTSEEEEEEETTSCBCHHHHHHHHTC
T ss_pred ChHHHHHHHCCCCeEEEEEccCCcccchHHHHHHHcCCCHhHeEEEEEEEecCCCCcEEEEEEECCceeCHHHHHHHhCC
Confidence 47899999999999996 56665 6899999999999999999999985 345799999999999999999999998
Q ss_pred CCCccccCCHHHHHHhcCCCceecCCCcccCCCCCCeEEEEecccccCCeEEeecCCCcceEEecHHHHHHHHHhcCCCC
Q 021074 80 GKGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDP 159 (317)
Q Consensus 80 kr~~Lr~AseEeL~e~lG~~pG~VsPfGL~nd~~~~V~ViID~sL~~~~~I~~h~G~n~~tI~Is~~DL~kll~a~g~~p 159 (317)
+ +++||+++++.++|||.+|+|+|||+. .++++|+|+++...+.|++|+|.++.++.|+++||.+++. .
T Consensus 82 ~--~l~~a~~e~~~~~tG~~~G~v~P~g~~----~~v~v~iD~~l~~~~~i~~~ag~~~~~~~v~~~dl~~~~~-----~ 150 (158)
T 1dbu_A 82 K--KVEMADKDAAQKSTGYLVGGISPLGQK----KRVKTVINSTALEFETIYVSGGKRGLSVEIAPQDLAKVLG-----A 150 (158)
T ss_dssp S--CEEECCHHHHHHHHSSCTTSCCSSSCS----SCCCEEEEGGGGGSSCEEEECSSTTEEEEECHHHHHHHHT-----C
T ss_pred C--CeeeCCHHHHHHHhCCCCccCCCCCCC----CCCEEEEEhHHhcCCeEEEeCCCCCcEEEECHHHHHHHhC-----C
Confidence 6 799999999999999999999999986 3799999999999999999999999999999999999987 4
Q ss_pred EEEEccCC
Q 021074 160 AYVDLEAN 167 (317)
Q Consensus 160 ~~VD~sa~ 167 (317)
.|+||+.+
T Consensus 151 ~~~di~~~ 158 (158)
T 1dbu_A 151 EFTDIVDE 158 (158)
T ss_dssp EEECCBCC
T ss_pred EEEeeecC
Confidence 68888753
No 7
>2dxa_A Protein YBAK; trans-editing domain, prolyl-tRNA synthetase, structural genomics, NPPSFA; HET: MSE; 1.58A {Escherichia coli}
Probab=99.96 E-value=3.9e-29 Score=216.72 Aligned_cols=150 Identities=17% Similarity=0.265 Sum_probs=137.8
Q ss_pred HHHHHHHHhCCCCeEE--EEcCC--CCCHHHHHHHhCCCCCceeeEEEEEecCC--cEEEEEEecCCCCcHHHHHHHhCC
Q 021074 6 DQLLARLKDLQIEFSQ--YEHPA--VMTVEAQAKYVGNIGGGLSKNLFLKDKKH--RFYIVSALADTKVDMKVLSQRLGL 79 (317)
Q Consensus 6 e~V~~~L~klgI~ye~--veHp~--~~TieeaAk~lg~~~~qivKtLvLkdkkg--~~vLVVl~gD~kVDlkKLak~LG~ 79 (317)
++++++|+++||+|++ ++|++ ..|++++|+.+|+++++++|||+++++++ +++++++|+|+++|++|+++.+|.
T Consensus 9 t~~~~~L~~~~i~y~~~~~~h~~~~~~~~~e~a~~l~~~~~~~~Ktlv~~~~~~~~~~~lvvv~gd~~ld~~kl~~~lg~ 88 (166)
T 2dxa_A 9 TPAVKLLEKNKISFQIHTYEHDPAETNFGDEVVKKLGLNPDQVYKTLLVAVNGDMKHLAVAVTPVAGQLDLKKVAKALGA 88 (166)
T ss_dssp CHHHHHHHHTTCCCEEEECCCCTTSCCSSCHHHHHHTCCTTTEEEEEEEEETTEEEEEEEEEEETTSEECHHHHHHHHTC
T ss_pred hHHHHHHHHCCCCcEEEEEecCCcccchHHHHHHHcCCCHHHeeEEEEEEeCCCCceEEEEEEeCCceeCHHHHHHHhCC
Confidence 6899999999999998 55876 37889999999999999999999998642 499999999999999999999998
Q ss_pred CCCccccCCHHHHHHhcCCCceecCCCcccCCCCCCeEEEEecccccCCeEEeecCCCcceEEecHHHHHHHHHhcCCCC
Q 021074 80 GKGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDP 159 (317)
Q Consensus 80 kr~~Lr~AseEeL~e~lG~~pG~VsPfGL~nd~~~~V~ViID~sL~~~~~I~~h~G~n~~tI~Is~~DL~kll~a~g~~p 159 (317)
+ +++||+++++.+++||.+|+|+|||+. .++++|+|+++...+.|++|+|.++..+.|+++||.+++. .
T Consensus 89 ~--~l~~a~~e~~~~~tG~~~G~v~P~g~~----~~v~v~iD~~l~~~~~i~~~ag~~~~~i~~~~~dl~~~~~-----~ 157 (166)
T 2dxa_A 89 K--KVEMADPMVAQRSTGYLVGGISPLGQK----KRLPTIIDAPAQEFATIYVSGGKRGLDIELAAGDLAKILD-----A 157 (166)
T ss_dssp S--CEEECCHHHHHHHHSSCTTCCCSSSCS----SCCCEEEEGGGGGSSCEEEEEEETTEEEEECHHHHHHHHT-----C
T ss_pred C--ceEECCHHHHHHccCCCCccCCCcCCC----CCCeEEEEhHHhcCCeEEEcCCCCCcEEEECHHHHHHHhC-----C
Confidence 6 799999999999999999999999996 3799999999999999999999999999999999999987 3
Q ss_pred EEEEccC
Q 021074 160 AYVDLEA 166 (317)
Q Consensus 160 ~~VD~sa 166 (317)
.|+||+.
T Consensus 158 ~~~di~~ 164 (166)
T 2dxa_A 158 KFADIAR 164 (166)
T ss_dssp EEECCEE
T ss_pred EEEEEec
Confidence 5888874
No 8
>3mem_A Putative signal transduction protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.25A {Marinobacter aquaeolei}
Probab=99.89 E-value=2.1e-23 Score=207.10 Aligned_cols=135 Identities=17% Similarity=0.248 Sum_probs=124.3
Q ss_pred CCCcHHHHHHHHHhC--CCCeEEEEcCCCCCHHHHHHHhCCCCCceeeEEEEEecCCcEEEEEEecCCCCcHHHHHHHhC
Q 021074 1 MAYSKDQLLARLKDL--QIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALADTKVDMKVLSQRLG 78 (317)
Q Consensus 1 M~~s~e~V~~~L~kl--gI~ye~veHp~~~TieeaAk~lg~~~~qivKtLvLkdkkg~~vLVVl~gD~kVDlkKLak~LG 78 (317)
|.+. ++++++|+++ ||+|+.++ |+++++++|||+++++++ |+++++|++++||++++++.+|
T Consensus 2 M~~~-~~v~~~L~~~~~~i~y~~~~--------------g~~~~~i~Ktl~~~~~~~-~~l~v~p~~~~ldlk~l~~~~g 65 (457)
T 3mem_A 2 MELP-VVVQQALGDNAPGVSFRSVS--------------QIDTGHLLRMVLLSDDQG-NLQAICRRNDMLDLEALNKRLG 65 (457)
T ss_dssp -CCC-HHHHHHHTTSCTTCEEEECC--------------SSCGGGBEEEEEEEETTE-EEEEEEETTSEECHHHHHHHHT
T ss_pred CCch-HHHHHHHHhCCCCCceEEeC--------------CCCHhHeeeEEEEEECCc-EEEEEecCCCeeCHHHHHHHhC
Confidence 4444 7899999999 99999877 678999999999999765 9999999999999999999999
Q ss_pred CCCCccccCCHHHHHHhc-CCCceecCCCcccCCCCCCeEEEEecccccCCeEEeecCCCcceEEecHHHHHHHHHhcCC
Q 021074 79 LGKGGLRMAPEETMLEIL-KVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGR 157 (317)
Q Consensus 79 ~kr~~Lr~AseEeL~e~l-G~~pG~VsPfGL~nd~~~~V~ViID~sL~~~~~I~~h~G~n~~tI~Is~~DL~kll~a~g~ 157 (317)
. +++|++++++.++| ||.+|+|||||+.+ ++++|+|+++.+.+.||+++|+++.++.|+++||.+++.+.+|
T Consensus 66 ~---k~~~~~~~~~~~~~~g~~~Ggv~P~g~~~----~~~~~iD~~l~~~~~i~~~~G~~~~~i~l~~~dl~~~~~~~~~ 138 (457)
T 3mem_A 66 R---DLRMMQRREQVRVRQKAGLQELPALPSLT----GWPTVVDRRVDELEAVALELGEQDLGLMMPAEDFRQLTAKAAR 138 (457)
T ss_dssp C---CCEECCHHHHHHHHHHHTCSSCCSCGGGT----CCCEEEEHHHHHCSEEEEECSSSSEEEEEEHHHHHHHTTTSEE
T ss_pred C---CCeeCCHHHHHHHcCCCCCCCCCCCCCCc----CCCEEEehhhccCCEEEEECCCCCceEEECHHHHHHHHccCCc
Confidence 7 49999999999998 69999999999985 7999999999999999999999999999999999999987666
Q ss_pred C
Q 021074 158 D 158 (317)
Q Consensus 158 ~ 158 (317)
.
T Consensus 139 ~ 139 (457)
T 3mem_A 139 H 139 (457)
T ss_dssp E
T ss_pred c
Confidence 4
No 9
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A*
Probab=99.27 E-value=8.8e-11 Score=118.79 Aligned_cols=108 Identities=20% Similarity=0.233 Sum_probs=97.7
Q ss_pred CCCCCHHHHHHHhCCCCCceeeEEEEEecCCcEEEEEEecCCCCcHHHHHHHhCCCCCccccCCHHHHHHhcCCCceecC
Q 021074 25 PAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALADTKVDMKVLSQRLGLGKGGLRMAPEETMLEILKVPLGSVT 104 (317)
Q Consensus 25 p~~~TieeaAk~lg~~~~qivKtLvLkdkkg~~vLVVl~gD~kVDlkKLak~LG~kr~~Lr~AseEeL~e~lG~~pG~Vs 104 (317)
|...|++++++.+|+++.+++|+|+++.+ ++++++++++|+++|++++.+.+|.+ .+.++..+++.+++|+..|+++
T Consensus 258 ~~~~ti~~l~~~lg~~~~~i~K~l~~~~~-~~~~~vli~gd~el~~~kl~~~l~~~--~l~~a~~~el~~~~g~~~g~~~ 334 (572)
T 2j3l_A 258 PEVGTIAEVANFFEVEPQRIIKSVLFIAD-EEPVMVLVRGDHDVNDVKLKNFLGAD--FLDEATEEDARRVLGAGFGSIG 334 (572)
T ss_dssp TTCCSHHHHHHHHTCCGGGBEEEEEEEET-TEEEEEEEETTCCBCHHHHHHHHTCS--CEEECCHHHHHHHHSSCTTSCC
T ss_pred CCCCcHHHHHHHhCcCHHHeEEEEEEEeC-CcEEEEEeeCccccCHHHHHHhhCCC--ccccCCHHHHHHhhCCCccccC
Confidence 34567999999999999999999999985 47999999999999999999999975 6999999999999999999999
Q ss_pred CCcccCCCCCCeEEEEecccccCCeEEeecCCCcc
Q 021074 105 PFALVNESARDVALLLDKGFKAQERCFFHPLSNDM 139 (317)
Q Consensus 105 PfGL~nd~~~~V~ViID~sL~~~~~I~~h~G~n~~ 139 (317)
|+|+. +++++++|.++.....+++++|..+.
T Consensus 335 p~gl~----~~i~~~iD~sl~r~~~~~~ga~~~~~ 365 (572)
T 2j3l_A 335 PVNVS----EDVKIYADLAVQDLANAIVGANEDGY 365 (572)
T ss_dssp STTCC----TTCEEEEETTTTTCCSEEEECSSTTE
T ss_pred CccCC----CCCcEEEehhhhcCCceEEccCCCCc
Confidence 99986 37999999999999999999986543
No 10
>1hmj_A RPB5, protein (subunit H); RNA polymerase, archaea; NMR {Methanocaldococcus jannaschii} SCOP: d.78.1.1
Probab=61.71 E-value=4.1 Score=31.25 Aligned_cols=43 Identities=16% Similarity=0.285 Sum_probs=37.4
Q ss_pred CcHHHHHHHHHhCCCCeEEEEcCCCCCHHHHHHHhCCCCCceeeE
Q 021074 3 YSKDQLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKN 47 (317)
Q Consensus 3 ~s~e~V~~~L~klgI~ye~veHp~~~TieeaAk~lg~~~~qivKt 47 (317)
||.++..++|++.+|.- ..-|.+...+-+|+++|..+++++|-
T Consensus 15 Ls~eEk~~lL~~y~i~~--~qLPrI~~~DPvar~~G~k~GdVvkI 57 (78)
T 1hmj_A 15 VPKEEVEEILKRYNIKI--QQLPKIYEDDPVIQEIGAKEGDVVRV 57 (78)
T ss_pred CCHHHHHHHHHHcCCCH--HHCCeeeCcCHhhHHhCCCCCCEEEE
Confidence 67899999999999964 34678888888999999999999986
No 11
>4ayb_H DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_H 2y0s_H 2waq_H 4b1o_H 4b1p_Z 2pmz_H 3hkz_H
Probab=57.42 E-value=12 Score=28.99 Aligned_cols=60 Identities=17% Similarity=0.137 Sum_probs=42.7
Q ss_pred CcHHHHHHHHHhCCCCeEEEEcCCCCCHHHHHHHhCCCCCceeeEEEEEecCCc--EEEEEEec
Q 021074 3 YSKDQLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHR--FYIVSALA 64 (317)
Q Consensus 3 ~s~e~V~~~L~klgI~ye~veHp~~~TieeaAk~lg~~~~qivKtLvLkdkkg~--~vLVVl~g 64 (317)
++.++..++|++.+|.-+ +-|.+...+-+|+++|..+++++|-.=-....|+ +|=+|++|
T Consensus 23 Ls~eE~~~ll~~y~i~~~--qLP~I~~~DPva~~~g~k~GdVvkI~R~S~tag~~~~YR~vv~g 84 (84)
T 4ayb_H 23 LSIDEAYKILKELGIRPE--QLPWIRASDPVARSINAKPGDIIRIIRKSQLYGEVVSYRYVISG 84 (84)
T ss_dssp CCHHHHHHHHHHHTCCGG--GSCCEESSSHHHHHHTCCTTCEEEEEEEETTTEEEEEEEEEEC-
T ss_pred CCHHHHHHHHHHhcCCHh--HCCeecccCHhHHhhCCCCCCEEEEEEcCCCCCccEEEEEEeCC
Confidence 568899999999999643 4577777778999999999999985533221232 45555543
No 12
>1eik_A RNA polymerase subunit RPB5; RPBH, OCSP, NESG, protein structure initiative, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: d.78.1.1
Probab=55.56 E-value=5.7 Score=30.38 Aligned_cols=43 Identities=23% Similarity=0.315 Sum_probs=37.5
Q ss_pred CcHHHHHHHHHhCCCCeEEEEcCCCCCHHHHHHHhCCCCCceeeE
Q 021074 3 YSKDQLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKN 47 (317)
Q Consensus 3 ~s~e~V~~~L~klgI~ye~veHp~~~TieeaAk~lg~~~~qivKt 47 (317)
+|.++..++|++.+|.-+ .-|.+...+-+|+++|..+++++|-
T Consensus 17 Ls~eEk~~lL~~y~i~~~--qLP~I~~~DPvar~~G~k~GdVvkI 59 (77)
T 1eik_A 17 LNESEAKRVLKELDAHPE--QLPKIKTTDPVAKAIGAKRGDIVKI 59 (77)
T ss_dssp ECHHHHHHHHHHTTCCTT--TSCCCBTTSHHHHGGGCCTTCEEEE
T ss_pred cCHHHHHHHHHHcCCCHH--HCCeeeCcCHhhHHhCCCCCCEEEE
Confidence 578999999999999643 4678889999999999999999986
No 13
>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A
Probab=25.54 E-value=2.1e+02 Score=22.18 Aligned_cols=54 Identities=13% Similarity=0.039 Sum_probs=35.0
Q ss_pred cHHHHHHHHHhCCCCeEEEEcCCCCCHHHHHHHhCCCCCc---------eeeEEEEEecCCcEEEEE
Q 021074 4 SKDQLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGG---------LSKNLFLKDKKHRFYIVS 61 (317)
Q Consensus 4 s~e~V~~~L~klgI~ye~veHp~~~TieeaAk~lg~~~~q---------ivKtLvLkdkkg~~vLVV 61 (317)
+.+.+.+++++++++|..+.-+. .+.++.+|+.... .+-+.++-|++|+.+.+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~d~~----~~~~~~~~v~~~~~~~~~~~~~~~p~~~lid~~G~i~~~~ 141 (163)
T 3gkn_A 79 SVKSHDNFCAKQGFAFPLVSDGD----EALCRAFDVIKEKNMYGKQVLGIERSTFLLSPEGQVVQAW 141 (163)
T ss_dssp CHHHHHHHHHHHCCSSCEEECTT----CHHHHHTTCEEEEEETTEEEEEECCEEEEECTTSCEEEEE
T ss_pred CHHHHHHHHHHhCCCceEEECCc----HHHHHHhCCccccccccccccCcceEEEEECCCCeEEEEE
Confidence 35678888888888887764322 2566777764321 156788888888765555
No 14
>3h0g_E DNA-directed RNA polymerases I, II, and III subunit rpabc1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=24.54 E-value=53 Score=29.40 Aligned_cols=43 Identities=21% Similarity=0.281 Sum_probs=37.8
Q ss_pred CcHHHHHHHHHhCCCCeEEEEcCCCCCHHHHHHHhCCCCCceeeE
Q 021074 3 YSKDQLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKN 47 (317)
Q Consensus 3 ~s~e~V~~~L~klgI~ye~veHp~~~TieeaAk~lg~~~~qivKt 47 (317)
++.++..++|++.+|.- ..-|.+...+-+|+++|..+++++|-
T Consensus 151 ls~eE~~~lL~~y~i~~--~qLP~I~~~DPv~~~~g~k~GdVvkI 193 (210)
T 3h0g_E 151 LSPDEKKELLDRYKLRE--TQLPRIQLADPVARYLGLKRGEVVKI 193 (210)
T ss_dssp CCHHHHHHHHHHTCCCT--TTSCCCCTTCHHHHHHTCCTTCEEEE
T ss_pred cCHHHHHHHHHHcCCCH--HHCCcccccCcchhhhCCCCCCEEEE
Confidence 67899999999999953 44688888899999999999999986
No 15
>3gkx_A Putative ARSC family related protein; ARSC family protein, structural genomi 2, protein structure initiative; 2.20A {Bacteroides fragilis} SCOP: c.47.1.0
Probab=23.99 E-value=53 Score=26.05 Aligned_cols=40 Identities=18% Similarity=0.016 Sum_probs=27.2
Q ss_pred HHHHHHHHHhCCCCeEEEEcC-CCCCHHHHHH---HhCCCCCce
Q 021074 5 KDQLLARLKDLQIEFSQYEHP-AVMTVEAQAK---YVGNIGGGL 44 (317)
Q Consensus 5 ~e~V~~~L~klgI~ye~veHp-~~~TieeaAk---~lg~~~~qi 44 (317)
..++.++|+++||+|+.++.- ...|.++... .+|.+...+
T Consensus 17 c~ka~~~L~~~gi~~~~~di~~~~~~~~eL~~~l~~~g~~~~~l 60 (120)
T 3gkx_A 17 CQKAKKWLIENNIEYTNRLIVDDNPTVEELKAWIPLSGLPVKKF 60 (120)
T ss_dssp HHHHHHHHHHTTCCCEEEETTTTCCCHHHHHHHHHHHTSCGGGG
T ss_pred HHHHHHHHHHcCCceEEEecccCcCCHHHHHHHHHHcCCCHHHe
Confidence 467899999999999988763 2345566544 445554433
No 16
>3l78_A Regulatory protein SPX; transcription, transcriptional factor, disulfide bond, redox-active center, transcription regulati; 1.90A {Streptococcus mutans} SCOP: c.47.1.12
Probab=20.35 E-value=1.1e+02 Score=23.89 Aligned_cols=34 Identities=12% Similarity=0.097 Sum_probs=26.1
Q ss_pred HHHHHHHHHhCCCCeEEEEcC-CCCCHHHHHHHhC
Q 021074 5 KDQLLARLKDLQIEFSQYEHP-AVMTVEAQAKYVG 38 (317)
Q Consensus 5 ~e~V~~~L~klgI~ye~veHp-~~~TieeaAk~lg 38 (317)
..++.++|+++||+|+.++.. ...|.++....++
T Consensus 13 c~ka~~~L~~~gi~~~~~di~~~~~~~~el~~~l~ 47 (120)
T 3l78_A 13 CRKARAWLNRHDVVFQEHNIMTSPLSRDELLKILS 47 (120)
T ss_dssp HHHHHHHHHHTTCCEEEEETTTSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCeEEEecccCCCcHHHHHHHHh
Confidence 467899999999999998864 3467777766653
No 17
>3fz4_A Putative arsenate reductase; APC61768, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.38A {Streptococcus mutans UA159} SCOP: c.47.1.0
Probab=20.19 E-value=64 Score=25.53 Aligned_cols=33 Identities=12% Similarity=0.162 Sum_probs=24.1
Q ss_pred HHHHHHHHHhCCCCeEEEEcC-CCCCHHHHHHHh
Q 021074 5 KDQLLARLKDLQIEFSQYEHP-AVMTVEAQAKYV 37 (317)
Q Consensus 5 ~e~V~~~L~klgI~ye~veHp-~~~TieeaAk~l 37 (317)
..++.++|+++||+|+.++.- ...|.++....+
T Consensus 16 c~ka~~~L~~~gi~~~~~di~~~~~~~~eL~~~l 49 (120)
T 3fz4_A 16 CRRAKAELDDLAWDYDAIDIKKNPPAASLIRNWL 49 (120)
T ss_dssp HHHHHHHHHHHTCCEEEEETTTSCCCHHHHHHHH
T ss_pred HHHHHHHHHHcCCceEEEEeccCchhHHHHHHHH
Confidence 367899999999999988763 335666655543
Done!