Query 021076
Match_columns 317
No_of_seqs 188 out of 1530
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 12:24:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021076.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021076hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 98.9 2.5E-09 8.4E-14 85.7 6.5 67 217-283 38-105 (137)
2 3b5d_A Multidrug transporter E 98.4 2.2E-06 7.5E-11 65.9 9.7 65 218-282 39-104 (110)
3 3b5d_A Multidrug transporter E 98.2 2.1E-05 7.2E-10 60.4 11.0 71 52-122 33-104 (110)
4 2i68_A Protein EMRE; transmemb 98.1 9.3E-06 3.2E-10 64.8 7.7 70 53-122 34-104 (137)
5 3rko_J NADH-quinone oxidoreduc 58.2 75 0.0026 25.9 10.7 24 251-274 128-151 (184)
6 3l1l_A Arginine/agmatine antip 49.9 16 0.00054 33.5 4.6 24 265-288 410-433 (445)
7 2jo1_A Phospholemman; FXYD1, N 35.0 8.3 0.00028 26.2 0.0 11 271-281 27-37 (72)
8 3ukw_C Bimax1 peptide; arm rep 33.1 21 0.00073 18.8 1.4 17 288-304 4-20 (28)
9 2jwa_A Receptor tyrosine-prote 32.1 32 0.0011 21.1 2.4 16 274-289 27-42 (44)
10 2zxe_G FXYD10, phospholemman-l 28.8 27 0.00094 23.9 1.8 17 269-285 28-44 (74)
11 3zux_A Transporter, ASBTNM; tr 25.1 3.5E+02 0.012 23.8 10.0 12 248-259 273-284 (332)
12 4dve_A Biotin transporter BIOY 24.4 2.8E+02 0.0094 22.7 7.6 73 45-122 13-88 (198)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.88 E-value=2.5e-09 Score=85.72 Aligned_cols=67 Identities=13% Similarity=0.173 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHhhChHHHHHH-HHHHHHHHHHHHHHHhcCCCchhhhhhhhHhHhHHHhhhhhc
Q 021076 217 TVATTSQFFISYTIRTFGALTFATI-MTTRQLVSIVLSCVWFRHPLSWEQCIGSIIVFGALYTRSFFK 283 (317)
Q Consensus 217 ~~~~~g~~~~~~~l~~~~a~~~si~-~~~~~v~aiils~l~f~e~~t~~~~~G~~lv~~Gi~~~~~~k 283 (317)
++..++++++.+++++.++.++..+ ..+.|+++.++++++|||++|+.+++|++++++|++.....+
T Consensus 38 ~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 38 ICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 3456777899999999999999888 899999999999999999999999999999999998877644
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.37 E-value=2.2e-06 Score=65.92 Aligned_cols=65 Identities=14% Similarity=0.181 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHhhChHHHHHH-HHHHHHHHHHHHHHHhcCCCchhhhhhhhHhHhHHHhhhhh
Q 021076 218 VATTSQFFISYTIRTFGALTFATI-MTTRQLVSIVLSCVWFRHPLSWEQCIGSIIVFGALYTRSFF 282 (317)
Q Consensus 218 ~~~~g~~~~~~~l~~~~a~~~si~-~~~~~v~aiils~l~f~e~~t~~~~~G~~lv~~Gi~~~~~~ 282 (317)
+..++++++.+++|+.+..++..+ ..+.|+.+.++++++|||++|+.+++|+++++.|++.....
T Consensus 39 ~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~ 104 (110)
T 3b5d_A 39 CYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (110)
T ss_pred HHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 345666788889999999999888 89999999999999999999999999999999999877654
No 3
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.16 E-value=2.1e-05 Score=60.37 Aligned_cols=71 Identities=10% Similarity=0.022 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCChhHHHH-HhhcchHHHHHHHHHHhccccchhHHHHHHHHHHhHHHhhcc
Q 021076 52 YCLVSMSNILTTTCQYEALKYVSFPVQTL-AKCAKMIPVMIWGTLIMQKRYKGYDYFLALLVTLGCSIFILF 122 (317)
Q Consensus 52 ~~~~s~~~~~~~~~~~~aL~~~s~~~~~l-l~s~~pi~v~i~~~l~~k~~~~~~~~~~~~l~~~Gv~l~~~~ 122 (317)
.+...+.+..+..+...++++.|.+.+-- .....|+.+++++++++||+++++|++++.++++|++++...
T Consensus 33 ~~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~ 104 (110)
T 3b5d_A 33 SVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 34444466777889999999999998754 489999999999999999999999999999999999998654
No 4
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.08 E-value=9.3e-06 Score=64.80 Aligned_cols=70 Identities=10% Similarity=0.045 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHHhhhcCChhHHHHH-hhcchHHHHHHHHHHhccccchhHHHHHHHHHHhHHHhhcc
Q 021076 53 CLVSMSNILTTTCQYEALKYVSFPVQTLA-KCAKMIPVMIWGTLIMQKRYKGYDYFLALLVTLGCSIFILF 122 (317)
Q Consensus 53 ~~~s~~~~~~~~~~~~aL~~~s~~~~~ll-~s~~pi~v~i~~~l~~k~~~~~~~~~~~~l~~~Gv~l~~~~ 122 (317)
+...+++..+..+.+.++++++.+.+..+ ....|++++++++++++|+++++|+++++++++|++++...
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~ 104 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 33345677778999999999999966444 89999999999999999999999999999999999998654
No 5
>3rko_J NADH-quinone oxidoreductase subunit J; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=58.17 E-value=75 Score=25.89 Aligned_cols=24 Identities=8% Similarity=0.094 Sum_probs=20.7
Q ss_pred HHHHHHhcCCCchhhhhhhhHhHh
Q 021076 251 VLSCVWFRHPLSWEQCIGSIIVFG 274 (317)
Q Consensus 251 ils~l~f~e~~t~~~~~G~~lv~~ 274 (317)
.++..+|++.+=+.+..++.|..+
T Consensus 128 ~iG~~Lft~Y~lpFElaSvlLLvA 151 (184)
T 3rko_J 128 AVGITLFGPYVLAVELASMLLLAG 151 (184)
T ss_dssp HHHHHHTTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578889999999999999998663
No 6
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=49.86 E-value=16 Score=33.52 Aligned_cols=24 Identities=4% Similarity=-0.171 Sum_probs=16.0
Q ss_pred hhhhhhHhHhHHHhhhhhccccCC
Q 021076 265 QCIGSIIVFGALYTRSFFKKVSEK 288 (317)
Q Consensus 265 ~~~G~~lv~~Gi~~~~~~k~~~~~ 288 (317)
.+.|..+++.|+.++.+.++|+++
T Consensus 410 ~~~~~~~~~~g~~~y~~~~~~~~~ 433 (445)
T 3l1l_A 410 VMWSFVTLMVITAMYALNYNRLHK 433 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTCC
T ss_pred HHHHHHHHHHHHHHHHHHhhhccc
Confidence 445777777888777776665443
No 7
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=34.98 E-value=8.3 Score=26.19 Aligned_cols=11 Identities=0% Similarity=-0.139 Sum_probs=4.8
Q ss_pred HhHhHHHhhhh
Q 021076 271 IVFGALYTRSF 281 (317)
Q Consensus 271 lv~~Gi~~~~~ 281 (317)
+.+.|+.+...
T Consensus 27 Lfi~GI~iilS 37 (72)
T 2jo1_A 27 LFILGILIVLS 37 (72)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 33445544433
No 8
>3ukw_C Bimax1 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; HET: BTB; 2.10A {Mus musculus}
Probab=33.15 E-value=21 Score=18.82 Aligned_cols=17 Identities=24% Similarity=0.497 Sum_probs=10.0
Q ss_pred CCCCCCCCCcccccccc
Q 021076 288 KPRPSEHPMENMHNGAS 304 (317)
Q Consensus 288 ~~~~~~~~~~~~~~~~~ 304 (317)
.+.|-+.|+|-||+|+.
T Consensus 4 rrrprkrplewdedeep 20 (28)
T 3ukw_C 4 RRRPRKRPLEWDEDEEP 20 (28)
T ss_dssp ---CCCCCCCCCGGGSC
T ss_pred ccccccCCcccccccCc
Confidence 35556668888887764
No 9
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=32.14 E-value=32 Score=21.14 Aligned_cols=16 Identities=13% Similarity=0.027 Sum_probs=7.5
Q ss_pred hHHHhhhhhccccCCC
Q 021076 274 GALYTRSFFKKVSEKP 289 (317)
Q Consensus 274 ~Gi~~~~~~k~~~~~~ 289 (317)
.|+.+..+-|+|+.++
T Consensus 27 ~~l~~~~~~RRR~~~~ 42 (44)
T 2jwa_A 27 LGVVFGILIKRRQQKI 42 (44)
T ss_dssp HHHHHHHHHHHHCSCC
T ss_pred HHHHHHhheehhhhhc
Confidence 4444444445544443
No 10
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=28.80 E-value=27 Score=23.86 Aligned_cols=17 Identities=6% Similarity=-0.170 Sum_probs=7.7
Q ss_pred hhHhHhHHHhhhhhccc
Q 021076 269 SIIVFGALYTRSFFKKV 285 (317)
Q Consensus 269 ~~lv~~Gi~~~~~~k~~ 285 (317)
.++.+.|+.+....|-|
T Consensus 28 ~vLfi~GI~iilS~kcr 44 (74)
T 2zxe_G 28 AVLCVIGIIILLAGKCR 44 (74)
T ss_dssp HHHHHHHHHHHTTTC--
T ss_pred HHHHHHHHHHHHcCccc
Confidence 34444566555544433
No 11
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=25.11 E-value=3.5e+02 Score=23.76 Aligned_cols=12 Identities=17% Similarity=0.354 Sum_probs=8.3
Q ss_pred HHHHHHHHHhcC
Q 021076 248 VSIVLSCVWFRH 259 (317)
Q Consensus 248 ~aiils~l~f~e 259 (317)
.++.++...|++
T Consensus 273 lai~lA~~~F~~ 284 (332)
T 3zux_A 273 LAAALAAAHFAA 284 (332)
T ss_dssp HHHHHHHHHSTT
T ss_pred HHHHHHHHHcCC
Confidence 666677777864
No 12
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=24.38 E-value=2.8e+02 Score=22.69 Aligned_cols=73 Identities=11% Similarity=0.064 Sum_probs=45.3
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHh---hhcCChhHHHHHhhcchHHHHHHHHHHhccccchhHHHHHHHHHHhHHHhhc
Q 021076 45 PVAPVYKYCLVSMSNILTTTCQYEA---LKYVSFPVQTLAKCAKMIPVMIWGTLIMQKRYKGYDYFLALLVTLGCSIFIL 121 (317)
Q Consensus 45 ~~~~~~~~~~~s~~~~~~~~~~~~a---L~~~s~~~~~ll~s~~pi~v~i~~~l~~k~~~~~~~~~~~~l~~~Gv~l~~~ 121 (317)
++.+.|+...++++..+...+.+.+ +-..++| -..+.+.+++.+.++..|+=.....+=+++..+|+=++..
T Consensus 13 ~~~k~r~l~~~alfaAliavla~i~~Ipip~~pVP-----iTlQtl~V~LaG~~LG~r~G~lsv~lYlllG~~GlPVFag 87 (198)
T 4dve_A 13 NNQKVKTLTYSAFMTAFIIILGFLPGIPIGFIPVP-----IILQNMGIMMAGGLLGPKYGTISVGAFLALALIGLPVLTG 87 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCCBCCSSSSCC-----BCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCBTT
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcC-----ccHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHcCccccC
Confidence 3456778888887766655555442 2233333 1244567888887776666666676767777888766654
Q ss_pred c
Q 021076 122 F 122 (317)
Q Consensus 122 ~ 122 (317)
+
T Consensus 88 g 88 (198)
T 4dve_A 88 G 88 (198)
T ss_dssp T
T ss_pred C
Confidence 3
Done!