Query 021076
Match_columns 317
No_of_seqs 188 out of 1530
Neff 8.4
Searched_HMMs 13730
Date Mon Mar 25 12:24:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021076.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/021076hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2r6gf1 e.70.1.1 (F:13-260) Ma 25.7 1.1E+02 0.0081 24.0 7.7 55 51-109 4-58 (248)
2 d1pw4a_ f.38.1.1 (A:) Glycerol 18.7 2.1E+02 0.016 22.7 17.6 27 140-167 61-87 (447)
3 d1iwga8 f.35.1.1 (A:513-566,A: 18.1 1.7E+02 0.012 22.1 7.2 28 247-274 95-122 (222)
4 d1pw4a_ f.38.1.1 (A:) Glycerol 17.3 2.3E+02 0.017 22.4 10.4 6 166-171 280-285 (447)
5 d2e74g1 f.23.26.1 (G:9-35) Pet 11.7 94 0.0069 15.1 2.5 19 267-285 3-22 (27)
6 d1fftb2 f.17.2.1 (B:27-117) Cy 11.0 57 0.0041 21.3 1.9 14 274-287 33-46 (91)
7 d3dtub2 f.17.2.1 (B:30-129) Ba 10.7 80 0.0058 20.8 2.7 15 271-285 41-55 (100)
8 d1iwga7 f.35.1.1 (A:7-37,A:331 10.4 1.4E+02 0.01 22.1 4.5 44 231-274 61-104 (199)
9 d3ehbb2 f.17.2.1 (B:1-107) Bac 10.3 87 0.0063 21.0 2.8 13 272-284 48-60 (107)
10 d1kqfb2 f.23.22.1 (B:246-290) 7.3 2.1E+02 0.015 16.0 3.2 27 254-280 5-31 (45)
No 1
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=25.67 E-value=1.1e+02 Score=23.99 Aligned_cols=55 Identities=7% Similarity=0.080 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCChhHHHHHhhcchHHHHHHHHHHhccccchhHHHHH
Q 021076 51 KYCLVSMSNILTTTCQYEALKYVSFPVQTLAKCAKMIPVMIWGTLIMQKRYKGYDYFLA 109 (317)
Q Consensus 51 ~~~~~s~~~~~~~~~~~~aL~~~s~~~~~ll~s~~pi~v~i~~~l~~k~~~~~~~~~~~ 109 (317)
+++++++++.+..+........-+.....+ ..+.+.++.++++.||.-+.+|+-=
T Consensus 4 K~~ll~l~~a~~~~~~~~~~~~~~~~~a~~----~~~~~~~~~~vy~s~r~~p~kyi~P 58 (248)
T d2r6gf1 4 KWSVLGLLGLLVGYLVVLMYAQGEYLFAIT----TLILSSAGLYIFANRKAYAWRYVYP 58 (248)
T ss_dssp THHHHHHHHHHHHHTHHHHHGGGCHHHHHH----HHHHHHHHHHHHSSSCCTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcchHHHHHH----HHHHHHheEEEEEccCccceehhhh
Confidence 567777777777666655555555544433 2334556667777777777776543
No 2
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=18.70 E-value=2.1e+02 Score=22.66 Aligned_cols=27 Identities=15% Similarity=0.030 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHccCC
Q 021076 140 WGVSLMVGYLGFDGFTSTFQDKLFKGYD 167 (317)
Q Consensus 140 ~G~~~~l~a~~~~a~~~v~~~~l~~~~~ 167 (317)
.|.+..+. .+.+++......++.++++
T Consensus 61 ~g~~~s~~-~~~~~~~~~~~G~l~Dr~g 87 (447)
T d1pw4a_ 61 LGFALSGI-SIAYGFSKFIMGSVSDRSN 87 (447)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHcC
Confidence 45543322 2233444455555556554
No 3
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=18.12 E-value=1.7e+02 Score=22.11 Aligned_cols=28 Identities=11% Similarity=0.170 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhcCCCchhhhhhhhHhHh
Q 021076 247 LVSIVLSCVWFRHPLSWEQCIGSIIVFG 274 (317)
Q Consensus 247 v~aiils~l~f~e~~t~~~~~G~~lv~~ 274 (317)
+...+++..+.+.+++....+|.++.++
T Consensus 95 ~~~~~~~l~~~g~~~~~~~~~g~i~l~G 122 (222)
T d1iwga8 95 VIGALLAATFRGLTNDVYFQVGLLTTIG 122 (222)
T ss_dssp HHHHHHHHHHTTCCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCchhhhhcccccchhh
Confidence 3455667778899999999998888664
No 4
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=17.29 E-value=2.3e+02 Score=22.43 Aligned_cols=6 Identities=0% Similarity=0.174 Sum_probs=2.5
Q ss_pred CCCCHH
Q 021076 166 YDMEIH 171 (317)
Q Consensus 166 ~~~~~~ 171 (317)
++.+..
T Consensus 280 ~~~~~~ 285 (447)
T d1pw4a_ 280 KHFALD 285 (447)
T ss_dssp SCCCHH
T ss_pred cccccc
Confidence 344443
No 5
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=11.68 E-value=94 Score=15.07 Aligned_cols=19 Identities=16% Similarity=0.501 Sum_probs=11.3
Q ss_pred hhhhHh-HhHHHhhhhhccc
Q 021076 267 IGSIIV-FGALYTRSFFKKV 285 (317)
Q Consensus 267 ~G~~lv-~~Gi~~~~~~k~~ 285 (317)
+|.+.+ ++|+++..+..-|
T Consensus 3 lgli~~tl~glf~aayqqyk 22 (27)
T d2e74g1 3 LGLVFATLGGLFYAAYQQYK 22 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHTT
T ss_pred eeehHHHHHHHHHHHHHHhc
Confidence 455543 4688877765543
No 6
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=11.03 E-value=57 Score=21.35 Aligned_cols=14 Identities=7% Similarity=-0.168 Sum_probs=7.2
Q ss_pred hHHHhhhhhccccC
Q 021076 274 GALYTRSFFKKVSE 287 (317)
Q Consensus 274 ~Gi~~~~~~k~~~~ 287 (317)
.|++.+..-|-|++
T Consensus 33 ~~~~~~~~~ryR~~ 46 (91)
T d1fftb2 33 ILMAVGFAWKYRAS 46 (91)
T ss_dssp HHHHHTTTTTTTTS
T ss_pred HHHHHhhheeeecc
Confidence 45555555554433
No 7
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=10.70 E-value=80 Score=20.85 Aligned_cols=15 Identities=13% Similarity=0.098 Sum_probs=6.7
Q ss_pred HhHhHHHhhhhhccc
Q 021076 271 IVFGALYTRSFFKKV 285 (317)
Q Consensus 271 lv~~Gi~~~~~~k~~ 285 (317)
+++.|+..+...|.|
T Consensus 41 ~~V~~~l~~~~~~~r 55 (100)
T d3dtub2 41 IFVTLLILYAVWRFH 55 (100)
T ss_dssp HHHHHHHHHHHHHHB
T ss_pred HHHHHHHHHHhhhhh
Confidence 334455444444433
No 8
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=10.37 E-value=1.4e+02 Score=22.08 Aligned_cols=44 Identities=18% Similarity=0.249 Sum_probs=27.6
Q ss_pred HhhChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhhHhHh
Q 021076 231 RTFGALTFATIMTTRQLVSIVLSCVWFRHPLSWEQCIGSIIVFG 274 (317)
Q Consensus 231 ~~~~a~~~si~~~~~~v~aiils~l~f~e~~t~~~~~G~~lv~~ 274 (317)
+..-+.....+...-.+........++|.+++.....+..+.++
T Consensus 61 rs~~~~li~~~~i~~~i~~~~~~m~~~g~~l~~~s~~~~~i~ig 104 (199)
T d1iwga7 61 QNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMVLAIG 104 (199)
T ss_dssp CCTTTTTHHHHHHHHHHHHHHHHHHTTTCCSCHHHHHHHHHHHH
T ss_pred hhhhhhheeccccchhhHHHHHHhhcCCCchHHHHHHHHHHHHH
Confidence 33334444444444445555556677888888888888777664
No 9
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=10.29 E-value=87 Score=21.02 Aligned_cols=13 Identities=8% Similarity=-0.051 Sum_probs=6.0
Q ss_pred hHhHHHhhhhhcc
Q 021076 272 VFGALYTRSFFKK 284 (317)
Q Consensus 272 v~~Gi~~~~~~k~ 284 (317)
.+.|+..+...|.
T Consensus 48 ~V~~~~~~~~~~~ 60 (107)
T d3ehbb2 48 FVCLLLLICIVRF 60 (107)
T ss_dssp HHHHHHHHHHHHS
T ss_pred HHHHHHHHHhhhh
Confidence 3445554444443
No 10
>d1kqfb2 f.23.22.1 (B:246-290) Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor {Escherichia coli [TaxId: 562]}
Probab=7.35 E-value=2.1e+02 Score=16.00 Aligned_cols=27 Identities=19% Similarity=0.176 Sum_probs=18.4
Q ss_pred HHHhcCCCchhhhhhhhHhHhHHHhhh
Q 021076 254 CVWFRHPLSWEQCIGSIIVFGALYTRS 280 (317)
Q Consensus 254 ~l~f~e~~t~~~~~G~~lv~~Gi~~~~ 280 (317)
+-++.....+...+|+....++.++-.
T Consensus 5 V~lWKgv~Kpl~~~~~~~~~~~~~fHY 31 (45)
T d1kqfb2 5 VSLWKGALKPLAAAGFIATFAGLIFHY 31 (45)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhhhhHHHHHHHHHHHHHHHHHHhh
Confidence 445677777888888888776544433
Done!