Your job contains 1 sequence.
>021078
MTAEEKILYKLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKN
YVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEE
NTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLRAQ
AETRSENRSDAAEDVQNTELDKPDFGSIPSMMECSENDPTTESLMASDSEDLSDIFETDS
ETETEEKAELRPLYLDQFDKFPVQNDEEHEDFEEHLRQISIDSRNAKSLGKDEDSSHFDE
VDKMFLRAASLLKKQKR
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 021078
(317 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2094438 - symbol:LOH1 "LAG One Homologue 1" sp... 961 1.1e-96 1
TAIR|locus:2056558 - symbol:AT2G28480 species:3702 "Arabi... 435 5.9e-41 1
TAIR|locus:2091458 - symbol:AT3G27550 species:3702 "Arabi... 401 8.4e-41 2
TAIR|locus:2123276 - symbol:AT4G13070 species:3702 "Arabi... 424 8.7e-40 1
TAIR|locus:2094558 - symbol:CFM3A "CRM family member 3A" ... 281 1.8e-23 1
TAIR|locus:2094997 - symbol:EMB1865 "embryo defective 186... 263 1.5e-21 1
TAIR|locus:2096662 - symbol:CFM2 "CRM family member 2" sp... 257 8.6e-21 1
TAIR|locus:2181372 - symbol:CRS1 "ortholog of maize chlor... 200 2.0e-13 1
>TAIR|locus:2094438 [details] [associations]
symbol:LOH1 "LAG One Homologue 1" species:3702
"Arabidopsis thaliana" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0009507 "chloroplast" evidence=ISM] [GO:0042761 "very
long-chain fatty acid biosynthetic process" evidence=IGI]
[GO:0050291 "sphingosine N-acyltransferase activity" evidence=IGI]
InterPro:IPR001890 Pfam:PF01985 PROSITE:PS51295 SMART:SM01103
GO:GO:0009507 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003723
EMBL:AB025639 GO:GO:0042761 Gene3D:3.30.110.60 SUPFAM:SSF75471
GO:GO:0050291 KO:K01148 EMBL:AK176804 IPI:IPI00542084
RefSeq:NP_189171.2 UniGene:At.37388 ProteinModelPortal:Q67XL4
SMR:Q67XL4 PaxDb:Q67XL4 PRIDE:Q67XL4 EnsemblPlants:AT3G25440.1
GeneID:822128 KEGG:ath:AT3G25440 TAIR:At3g25440 eggNOG:NOG254408
HOGENOM:HOG000240887 InParanoid:Q67XL4 OMA:RRYIPRL PhylomeDB:Q67XL4
ProtClustDB:CLSN2681576 Genevestigator:Q67XL4 Uniprot:Q67XL4
Length = 444
Score = 961 (343.3 bits), Expect = 1.1e-96, P = 1.1e-96
Identities = 205/325 (63%), Positives = 242/325 (74%)
Query: 1 MTAEEKILYKLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKN 60
MT+EEKIL KLRKARKKEER++E +KK+EP ES+E THDPEILTPEEHFY+LKMG KCKN
Sbjct: 135 MTSEEKILNKLRKARKKEERLMETMKKLEPSESAETTHDPEILTPEEHFYYLKMGLKCKN 194
Query: 61 YVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEE 120
YVPVGRRGIYQGVILNMHLHWKKHQTL+V++KTF+ +EVKEIA ELARLTGGIVL++HE
Sbjct: 195 YVPVGRRGIYQGVILNMHLHWKKHQTLQVVIKTFTPDEVKEIAVELARLTGGIVLDVHEG 254
Query: 121 NTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKXXXXXXXXXXX 180
NTIIMYRGKNY QPPTEIMSPRITL RKKALDKSK RD LRAV+KYIP+
Sbjct: 255 NTIIMYRGKNYVQPPTEIMSPRITLPRKKALDKSKCRDALRAVRKYIPRLEQELQLLQAQ 314
Query: 181 XXTRSENRSDAAEDVQ--NTELDKPDFGSIPSMMECSENDPTTESL---MASDSEDLSDI 235
T+ + + +D Q + EL K I EC E++ + +A+DS DLSDI
Sbjct: 315 AETKRDYTNVKVDDNQERSEELKK----IIERSEECLEDEQEEDEAGLELATDS-DLSDI 369
Query: 236 FETDSETETEEKAELRPLYLDQFDKFPVQNDEEHEDFEEHLRQISIDSRNAKSLGKDED- 294
FETDSE E + K E RPL+L++F+KFP N+ E EDF D AKS G++ D
Sbjct: 370 FETDSELE-DAKTE-RPLFLEEFEKFPAINNREDEDFG--------DLGKAKSEGEENDD 419
Query: 295 --SSHFDEVDKMFLRAASLLKKQKR 317
S +FDEVDKMFLRAA LLKK++R
Sbjct: 420 DKSPNFDEVDKMFLRAAFLLKKKRR 444
>TAIR|locus:2056558 [details] [associations]
symbol:AT2G28480 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0009507 "chloroplast"
evidence=ISM] InterPro:IPR001890 Pfam:PF01985 PROSITE:PS51295
SMART:SM01103 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003723
EMBL:AC006587 Gene3D:3.30.110.60 SUPFAM:SSF75471
HOGENOM:HOG000241798 EMBL:BT011753 EMBL:AK226713 IPI:IPI00526248
PIR:D84685 RefSeq:NP_180415.1 UniGene:At.50106
ProteinModelPortal:Q9SK10 SMR:Q9SK10 EnsemblPlants:AT2G28480.1
GeneID:817396 KEGG:ath:AT2G28480 TAIR:At2g28480 eggNOG:NOG245924
InParanoid:Q9SK10 OMA:ANRKDPR PhylomeDB:Q9SK10
ProtClustDB:CLSN2913133 Genevestigator:Q9SK10 Uniprot:Q9SK10
Length = 372
Score = 435 (158.2 bits), Expect = 5.9e-41, P = 5.9e-41
Identities = 95/251 (37%), Positives = 143/251 (56%)
Query: 1 MTAEEKILYKLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKN 60
+ AEE+I YKL KA+ KE ++E LK+ E + P +T EE FY KMG+K N
Sbjct: 122 VNAEERIKYKLEKAKIKEALLIERLKRYEVAKVQGPEVRPHEITGEERFYLKKMGQKRSN 181
Query: 61 YVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEE 120
YVP+GRRG++ GVILNMHLHWKKH+T+KVI +V++ A ELA+L+GG+ + I +
Sbjct: 182 YVPIGRRGVFGGVILNMHLHWKKHETVKVICNNSKPGQVQQYAEELAKLSGGVPVNIIGD 241
Query: 121 NTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKXXXXXXXXXXX 180
+TII YRGK Y QP ++MSP TLS+K+A +KSKY L +V+ +I
Sbjct: 242 DTIIFYRGKGYVQP--QVMSPIDTLSKKRAYEKSKYEQSLESVRHFIAIAEKELELYYRH 299
Query: 181 XXTRSE-NRSDAAEDVQNTELDKPDFGSIPSMMECSENDPTTESLMASDSEDLSDIFETD 239
+ N + + ++ + + CS+ D ++E + E+L ++ +
Sbjct: 300 VALYDDPNNRNPLSILDDSPSESRQHHENEFFLSCSDTDSSSED--EDEDEELCEL-DNG 356
Query: 240 SETETEEKAEL 250
S + + K EL
Sbjct: 357 SSSSSSAKEEL 367
>TAIR|locus:2091458 [details] [associations]
symbol:AT3G27550 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0009507 "chloroplast"
evidence=ISM] InterPro:IPR001890 Pfam:PF01985 PROSITE:PS51295
SMART:SM01103 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003723
Gene3D:3.30.110.60 SUPFAM:SSF75471 EMBL:AB025626 IPI:IPI00525575
RefSeq:NP_189392.1 UniGene:At.37034 ProteinModelPortal:Q9LT57
SMR:Q9LT57 EnsemblPlants:AT3G27550.1 GeneID:822377
KEGG:ath:AT3G27550 TAIR:At3g27550 eggNOG:NOG248894
HOGENOM:HOG000241218 InParanoid:Q9LT57 OMA:RMRKESG PhylomeDB:Q9LT57
ProtClustDB:CLSN2685015 Genevestigator:Q9LT57 Uniprot:Q9LT57
Length = 491
Score = 401 (146.2 bits), Expect = 8.4e-41, Sum P(2) = 8.4e-41
Identities = 78/169 (46%), Positives = 115/169 (68%)
Query: 1 MTAEEKILYKLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKN 60
MT EE+++Y L++A+KK +++ LKK + E HDPE+ T E+ F K+G K KN
Sbjct: 50 MTDEERLIYNLKRAKKKVALLLQKLKKYDLPELPSPVHDPELFTSEQVQAFKKIGFKNKN 109
Query: 61 YVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEE 120
YVPVG RG++ GV+ NMH+HWK H+T++V F E++KE+A+ +ARL+GG+V+ IH
Sbjct: 110 YVPVGVRGVFGGVVQNMHMHWKFHETVQVCCDNFPKEKIKEMASMIARLSGGVVINIHNV 169
Query: 121 NTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPK 169
TIIM+RG+NY QP I P TL+++KAL K+++ L + K I K
Sbjct: 170 KTIIMFRGRNYRQPKNLI--PVNTLTKRKALFKARFEQALESQKLNIKK 216
Score = 49 (22.3 bits), Expect = 8.4e-41, Sum P(2) = 8.4e-41
Identities = 21/83 (25%), Positives = 34/83 (40%)
Query: 219 PTTESLMASDSEDLSDIFETDSETETEEKAELRPL-YLDQFDKFPVQNDEEHEDFEEHLR 277
P + + SD + LSD+ T ++E EE A P Y+ D +N + R
Sbjct: 406 PRPRAQVRSDDDVLSDLDNTMWDSEDEEDAP--PANYISSSDDDEDENRTVSASSSKQSR 463
Query: 278 QISIDSRNAKSLGKDEDSSHFDE 300
+ SR+ + K + DE
Sbjct: 464 FRNNSSRDGINNSKSKSGKQRDE 486
Score = 43 (20.2 bits), Expect = 3.6e-40, Sum P(2) = 3.6e-40
Identities = 17/63 (26%), Positives = 25/63 (39%)
Query: 184 RSENRSD--AAEDVQNTELDKPDFGSIP-SMMECSENDPTTESLMASDSEDLSDIFETDS 240
R++ RSD D+ NT D D P + S +D E+ S S F +S
Sbjct: 409 RAQVRSDDDVLSDLDNTMWDSEDEEDAPPANYISSSDDDEDENRTVSASSSKQSRFRNNS 468
Query: 241 ETE 243
+
Sbjct: 469 SRD 471
Score = 40 (19.1 bits), Expect = 7.4e-40, Sum P(2) = 7.4e-40
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 217 NDPTTESLMA-SDSEDLSDIFETDSETE 243
ND T S +DS+D D E DSE +
Sbjct: 347 NDRDTHSQRRPNDSDDDDDDGELDSEDD 374
>TAIR|locus:2123276 [details] [associations]
symbol:AT4G13070 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0009507 "chloroplast"
evidence=ISM] InterPro:IPR001890 Pfam:PF01985 PROSITE:PS51295
SMART:SM01103 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0003723
Gene3D:3.30.110.60 SUPFAM:SSF75471 EMBL:BT022043 EMBL:BT029203
EMBL:AK175251 EMBL:AK176471 EMBL:AK176848 IPI:IPI00516587
RefSeq:NP_193043.2 UniGene:At.43316 ProteinModelPortal:Q67YJ7
SMR:Q67YJ7 EnsemblPlants:AT4G13070.1 GeneID:826921
KEGG:ath:AT4G13070 TAIR:At4g13070 eggNOG:NOG314366
HOGENOM:HOG000241798 InParanoid:Q67YJ7 OMA:NELRFYR PhylomeDB:Q67YJ7
ProtClustDB:CLSN2918582 Genevestigator:Q67YJ7 Uniprot:Q67YJ7
Length = 343
Score = 424 (154.3 bits), Expect = 8.7e-40, P = 8.7e-40
Identities = 86/168 (51%), Positives = 118/168 (70%)
Query: 4 EEKILYKLRKARKKEERIVEGLKKIE-PKESSEMTHDPEILTPEEHFYFLKMGRKCKNYV 62
E +I YKL KA++KEE ++E L+K + PK +E +DPE LT EE Y + G K KN+V
Sbjct: 143 EVRIRYKLEKAKRKEEWLIEKLRKYDVPKSPAE-PYDPESLTEEEQHYLKRTGEKRKNFV 201
Query: 63 PVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAE-EVKEIAAELARLTGGIVLEIHEEN 121
VGRRG++ GV+LN+HLHWKKH+T+KVI K + +V E A ELARL+ GIV+++ N
Sbjct: 202 LVGRRGVFGGVVLNLHLHWKKHETVKVICKPCNKPGQVHEYAEELARLSKGIVIDVKPNN 261
Query: 122 TIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPK 169
TI++YRGKNY +P E+MSP TLS+ KAL+K +Y L ++I K
Sbjct: 262 TIVLYRGKNYVRP--EVMSPVDTLSKDKALEKYRYEQSLEHTSEFIEK 307
>TAIR|locus:2094558 [details] [associations]
symbol:CFM3A "CRM family member 3A" species:3702
"Arabidopsis thaliana" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0000373 "Group II
intron splicing" evidence=IMP] [GO:0048316 "seed development"
evidence=IGI] InterPro:IPR001890 Pfam:PF01985 PROSITE:PS51295
SMART:SM01103 GO:GO:0009507 EMBL:CP002686 GO:GO:0003723
GO:GO:0048316 Gene3D:3.30.110.60 SUPFAM:SSF75471 GO:GO:0000373
IPI:IPI00537962 RefSeq:NP_188947.2 UniGene:At.6125 UniGene:At.71222
ProteinModelPortal:F4J2U9 SMR:F4J2U9 PRIDE:F4J2U9
EnsemblPlants:AT3G23070.1 GeneID:821881 KEGG:ath:AT3G23070
OMA:VEILRHE Uniprot:F4J2U9
Length = 881
Score = 281 (104.0 bits), Expect = 1.8e-23, P = 1.8e-23
Identities = 74/246 (30%), Positives = 126/246 (51%)
Query: 6 KILYKLRKARKKEERIVEGLKKIEP-KESSEMTHDPEILTPEEHFYFLKMGRKCKNYVPV 64
K+ KL A +K + GL K+E + +E DPE +T EE F F K+G K K ++ +
Sbjct: 600 KLERKLAFAERKLLKAERGLAKVEVCLKPAEQREDPESITDEERFMFRKLGLKMKAFLLL 659
Query: 65 GRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEEN--- 121
GRRG++ G + NMHLHWK + +K+IVK + + VK++A L +GGI++ I +
Sbjct: 660 GRRGVFDGTVENMHLHWKYRELVKIIVKAKTFDGVKKVALALEAESGGILVSIDKVTKGY 719
Query: 122 TIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKXXXXXXXXXXXX 181
II+YRG++Y +P ++ P+ L+++KAL +S + K+I
Sbjct: 720 AIIVYRGQDYKRPT--MLRPKNLLTKRKALARSIELQRREGLLKHI-STMQAKAKQLRAE 776
Query: 182 XTRSENRSDAAEDVQNTELDKPDFGSIPSMMECSENDPTTESLMASDSEDLSDIFETD-S 240
+ E +D ++ +LD S E ++D E+ + + +I + S
Sbjct: 777 IEQMEKVTDKGDEELYNKLDMAYASSDEETDEEDDDDAFPETYAEGEDGEEGEILAGELS 836
Query: 241 ETETEE 246
ETE ++
Sbjct: 837 ETEDKD 842
>TAIR|locus:2094997 [details] [associations]
symbol:EMB1865 "embryo defective 1865" species:3702
"Arabidopsis thaliana" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=NAS] [GO:0009737
"response to abscisic acid stimulus" evidence=IDA] [GO:0006655
"phosphatidylglycerol biosynthetic process" evidence=RCA]
[GO:0009902 "chloroplast relocation" evidence=RCA] [GO:0010027
"thylakoid membrane organization" evidence=RCA] [GO:0016117
"carotenoid biosynthetic process" evidence=RCA] [GO:0019288
"isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=RCA] [GO:0034660 "ncRNA
metabolic process" evidence=RCA] InterPro:IPR001890 Pfam:PF01985
PROSITE:PS51295 SMART:SM01103 GO:GO:0009737 GO:GO:0009507
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003723 EMBL:AB026658
Gene3D:3.30.110.60 SUPFAM:SSF75471 HOGENOM:HOG000241574
EMBL:AY063908 IPI:IPI00520842 RefSeq:NP_188468.1 UniGene:At.20890
ProteinModelPortal:Q9LS51 SMR:Q9LS51 STRING:Q9LS51 PaxDb:Q9LS51
PRIDE:Q9LS51 EnsemblPlants:AT3G18390.1 GeneID:821368
KEGG:ath:AT3G18390 TAIR:At3g18390 eggNOG:NOG326934
InParanoid:Q9LS51 OMA:DMKTAHE PhylomeDB:Q9LS51
ProtClustDB:CLSN2684381 ArrayExpress:Q9LS51 Genevestigator:Q9LS51
Uniprot:Q9LS51
Length = 848
Score = 263 (97.6 bits), Expect = 1.5e-21, P = 1.5e-21
Identities = 78/237 (32%), Positives = 125/237 (52%)
Query: 5 EKILYKLRKARKKEERIVEGLKKIEPKE-SSEMTHDPEILTPEEHFYFLKMGRKCKNYVP 63
++I +KL A+ K +R + L KIE + +D E+++ EE F K+G K K Y+P
Sbjct: 614 KRIQHKLNLAQSKFQRAEKLLSKIEASMIPNGPDYDQEVISEEERAMFRKVGLKMKAYLP 673
Query: 64 VGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEEN-- 121
+G RG++ GVI NMHLHWK + +K+I K + V+E A L +GG+++ I +
Sbjct: 674 IGIRGVFDGVIENMHLHWKHRELVKLISKQKNQAFVEETARLLEYESGGVLVAIEKVPKG 733
Query: 122 -TIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKXXXXXXXXXXX 180
+I YRGKNY +P + + PR L++ KAL +S A+ ++I +
Sbjct: 734 FALIYYRGKNYRRPIS--LRPRNLLTKAKALKRSIAMQRHEALSQHISELERTIEQMQSQ 791
Query: 181 XXTRSENRSDAAEDVQNTELDKPDFGSIPSMMECSEND--PTT-ESLMASDSE-DLS 233
S+N S + + +N E D D +E +E+D T ES ++S E D+S
Sbjct: 792 LT--SKNPSYSESEWENDEDDDDDEEEEKDDVEDNESDWDETDGESAISSIEEADMS 846
>TAIR|locus:2096662 [details] [associations]
symbol:CFM2 "CRM family member 2" species:3702
"Arabidopsis thaliana" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0009507 "chloroplast" evidence=ISM;RCA] [GO:0000372 "Group I
intron splicing" evidence=IMP] [GO:0000373 "Group II intron
splicing" evidence=IMP] InterPro:IPR001890 Pfam:PF01985
PROSITE:PS51295 SMART:SM01103 EMBL:CP002686 GO:GO:0003723
Gene3D:3.30.110.60 SUPFAM:SSF75471 GO:GO:0000373 GO:GO:0000372
EMBL:AY136347 EMBL:BT010594 IPI:IPI00518423 RefSeq:NP_186786.2
UniGene:At.28082 ProteinModelPortal:Q8L7C2 SMR:Q8L7C2 IntAct:Q8L7C2
STRING:Q8L7C2 PaxDb:Q8L7C2 PRIDE:Q8L7C2 EnsemblPlants:AT3G01370.1
GeneID:821288 KEGG:ath:AT3G01370 TAIR:At3g01370 eggNOG:NOG300241
InParanoid:Q8L7C2 OMA:ASMIKLW PhylomeDB:Q8L7C2
ProtClustDB:CLSN2690653 ArrayExpress:Q8L7C2 Genevestigator:Q8L7C2
Uniprot:Q8L7C2
Length = 1011
Score = 257 (95.5 bits), Expect = 8.6e-21, P = 8.6e-21
Identities = 80/317 (25%), Positives = 147/317 (46%)
Query: 5 EKILYKLRKARKKEERIVEGLKKIEPKESSEMTH-DPEILTPEEHFYFLKMGRKCKNYVP 63
EK KL A +K+ + L +E +ES +++ D E +T +E + K+G K K ++
Sbjct: 540 EKTSMKLSMALEKKANAEKVLADLENRESPQLSDIDKEGITNDEKYMLRKIGLKMKPFLL 599
Query: 64 VGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEEN-- 121
+GRRG++ G I NMHLHWK + +K+I +S E ++A L +GGI++ + +
Sbjct: 600 LGRRGVFDGTIENMHLHWKYRELVKIICNEYSIEAAHKVAEILEAESGGILVAVEMVSKG 659
Query: 122 -TIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKXXXXXXXXXXX 180
II+YRGKNY +P + + P+ LS+++AL +S +++K ++ K
Sbjct: 660 YAIIVYRGKNYERP--QCLRPQTLLSKREALKRSVEAQRRKSLKLHVLKLSNNIEELNRQ 717
Query: 181 XXTRSENRSDAAEDVQNTELDKPDFGSIPSMMECSENDPTTESLMASDSEDLSDIFETDS 240
S ++ D +++ + + + + +E + E + S DLS +
Sbjct: 718 LVEDSAT-NETWSDGESSNMMVEE----ETENQHTEPEKAREKIELGYSSDLSVPSSGEE 772
Query: 241 ETETEEKAELRPLYLDQFDKFPVQNDEEHEDFEEHLRQISIDSRNAKSLGKDEDSSHFDE 300
E + + E+ PL + Q DE + S+DS S+ + S++
Sbjct: 773 NWEDDSEGEVDPLTTSSQE---YQEDESESASSQRHEGNSLDSTANLSVFAETGSANASS 829
Query: 301 VDKMFLRAASLLKKQKR 317
L S L ++
Sbjct: 830 FHDRSLPHNSFLNANRK 846
Score = 123 (48.4 bits), Expect = 0.00024, P = 0.00024
Identities = 33/126 (26%), Positives = 62/126 (49%)
Query: 9 YKLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRRG 68
++L++ KKE + E K+ + +E+T L P E +G + + +G+ G
Sbjct: 138 HELKRVWKKETEM-ERKKEEKVPSLAELT-----LPPAELRRLRTVGIRLTKKLKIGKAG 191
Query: 69 IYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEENTIIMYRG 128
I +G++ +H W+ + +K+ + S +K L TGG+V+ + I++YRG
Sbjct: 192 ITEGIVNGIHERWRTTEVVKIFCEDISRMNMKRTHDVLETKTGGLVIW-RSGSKILLYRG 250
Query: 129 KNYAQP 134
NY P
Sbjct: 251 VNYQYP 256
>TAIR|locus:2181372 [details] [associations]
symbol:CRS1 "ortholog of maize chloroplast splicing
factor CRS1" species:3702 "Arabidopsis thaliana" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0009507 "chloroplast" evidence=ISM]
[GO:0000373 "Group II intron splicing" evidence=IDA]
InterPro:IPR001890 Pfam:PF01985 PROSITE:PS51295 SMART:SM01103
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0009570 GO:GO:0006417
GO:GO:0006397 GO:GO:0003723 GO:GO:0030529 Gene3D:3.30.110.60
SUPFAM:SSF75471 GO:GO:0000373 EMBL:AL391148 IPI:IPI00521200
PIR:T51488 RefSeq:NP_197122.2 UniGene:At.50459 UniGene:At.54863
ProteinModelPortal:Q9LF10 SMR:Q9LF10 PaxDb:Q9LF10 PRIDE:Q9LF10
GeneID:831476 KEGG:ath:AT5G16180 TAIR:At5g16180 eggNOG:NOG322716
HOGENOM:HOG000241574 InParanoid:Q9LF10 OMA:KIERSNQ
ArrayExpress:Q9LF10 Genevestigator:Q9LF10 Uniprot:Q9LF10
Length = 720
Score = 200 (75.5 bits), Expect = 2.0e-13, P = 2.0e-13
Identities = 55/162 (33%), Positives = 89/162 (54%)
Query: 9 YKLRKARKKEERIVEGLKKIEPK-ESSEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRR 67
+KL + K E+ L K+ + SE D EILT EE ++G K + + +GRR
Sbjct: 537 HKLSILKSKIEKSNMELFKLNSLWKPSEGDDDIEILTNEERECLRRIGLKMNSSLVLGRR 596
Query: 68 GIYQGVILNMHLHWKKHQTLKVIV--KTFSAEEVKEIAAELARLTGGIVLEIH---EENT 122
G++ GV+ +H HWK + KVI K FS V A L + G+++ I E +
Sbjct: 597 GVFFGVMEGLHQHWKHREVAKVITMQKLFS--RVVYTAKALETESNGVLISIEKLKEGHA 654
Query: 123 IIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVK 164
I++YRGKNY +P +++M+ + L+++KAL +S L ++K
Sbjct: 655 ILIYRGKNYKRPSSKLMAQNL-LTKRKALQRSVVMQRLGSLK 695
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.312 0.130 0.360 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 317 304 0.00098 115 3 11 23 0.47 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 8
No. of states in DFA: 591 (63 KB)
Total size of DFA: 200 KB (2113 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 31.47u 0.13s 31.60t Elapsed: 00:00:01
Total cpu time: 31.47u 0.13s 31.60t Elapsed: 00:00:01
Start: Sat May 11 00:33:52 2013 End: Sat May 11 00:33:53 2013