BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021078
(317 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|297739537|emb|CBI29719.3| unnamed protein product [Vitis vinifera]
Length = 331
Score = 476 bits (1224), Expect = e-132, Method: Compositional matrix adjust.
Identities = 239/332 (71%), Positives = 276/332 (83%), Gaps = 16/332 (4%)
Query: 1 MTAEEKILYKLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKN 60
MTAEEKILYKLRKAR+KEER+ E L KIEPKESSE THDPEILTPEEHF+FLKMG KCKN
Sbjct: 1 MTAEEKILYKLRKARRKEERLAEALTKIEPKESSETTHDPEILTPEEHFFFLKMGLKCKN 60
Query: 61 YVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEE 120
YVP+GRRGIYQGVILNMHLHWKKHQTL+V+VKTFS EEVKEIA ELARLTGGIVL+IHEE
Sbjct: 61 YVPIGRRGIYQGVILNMHLHWKKHQTLQVVVKTFSPEEVKEIAVELARLTGGIVLDIHEE 120
Query: 121 NTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLRAQ 180
NTIIMYRGKNY+QPPTEIMSPRITLSRKKALDKSKYRDGLRAV+KYIP+LE +LELL+AQ
Sbjct: 121 NTIIMYRGKNYSQPPTEIMSPRITLSRKKALDKSKYRDGLRAVRKYIPRLEGDLELLQAQ 180
Query: 181 AETRSENRSDAAEDVQNTELDKPDFGSIPSMM---------------ECSENDPTTESLM 225
A+ ++EN+++A ED QN +D + I ++ E SE + T+S
Sbjct: 181 AKMQAENKTEAVEDFQNANIDSINSQGISNLQPENSDKLRELLAGNNESSEEESLTDSGT 240
Query: 226 ASDSEDLSDIFETDSETETEEKAELRPLYLDQFDKFPVQNDEEHEDFEEHLRQISIDSRN 285
S SE LSDIFE+DS+T+T+EKAE + LYL++F+KFPV++D E EDFEEHLRQIS DSR
Sbjct: 241 ESCSEALSDIFESDSDTDTKEKAE-QLLYLNEFEKFPVESDGEPEDFEEHLRQISADSRK 299
Query: 286 AKSLGKDEDSSHFDEVDKMFLRAASLLKKQKR 317
AKSL KD D DEVD+MFLRAASLLKK++R
Sbjct: 300 AKSLEKDADLPQLDEVDQMFLRAASLLKKKRR 331
>gi|225448146|ref|XP_002263852.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
chloroplastic-like [Vitis vinifera]
Length = 401
Score = 475 bits (1223), Expect = e-131, Method: Compositional matrix adjust.
Identities = 239/332 (71%), Positives = 276/332 (83%), Gaps = 16/332 (4%)
Query: 1 MTAEEKILYKLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKN 60
MTAEEKILYKLRKAR+KEER+ E L KIEPKESSE THDPEILTPEEHF+FLKMG KCKN
Sbjct: 71 MTAEEKILYKLRKARRKEERLAEALTKIEPKESSETTHDPEILTPEEHFFFLKMGLKCKN 130
Query: 61 YVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEE 120
YVP+GRRGIYQGVILNMHLHWKKHQTL+V+VKTFS EEVKEIA ELARLTGGIVL+IHEE
Sbjct: 131 YVPIGRRGIYQGVILNMHLHWKKHQTLQVVVKTFSPEEVKEIAVELARLTGGIVLDIHEE 190
Query: 121 NTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLRAQ 180
NTIIMYRGKNY+QPPTEIMSPRITLSRKKALDKSKYRDGLRAV+KYIP+LE +LELL+AQ
Sbjct: 191 NTIIMYRGKNYSQPPTEIMSPRITLSRKKALDKSKYRDGLRAVRKYIPRLEGDLELLQAQ 250
Query: 181 AETRSENRSDAAEDVQNTELDKPDFGSIPSMM---------------ECSENDPTTESLM 225
A+ ++EN+++A ED QN +D + I ++ E SE + T+S
Sbjct: 251 AKMQAENKTEAVEDFQNANIDSINSQGISNLQPENSDKLRELLAGNNESSEEESLTDSGT 310
Query: 226 ASDSEDLSDIFETDSETETEEKAELRPLYLDQFDKFPVQNDEEHEDFEEHLRQISIDSRN 285
S SE LSDIFE+DS+T+T+EKAE + LYL++F+KFPV++D E EDFEEHLRQIS DSR
Sbjct: 311 ESCSEALSDIFESDSDTDTKEKAE-QLLYLNEFEKFPVESDGEPEDFEEHLRQISADSRK 369
Query: 286 AKSLGKDEDSSHFDEVDKMFLRAASLLKKQKR 317
AKSL KD D DEVD+MFLRAASLLKK++R
Sbjct: 370 AKSLEKDADLPQLDEVDQMFLRAASLLKKKRR 401
>gi|255572670|ref|XP_002527268.1| conserved hypothetical protein [Ricinus communis]
gi|223533361|gb|EEF35112.1| conserved hypothetical protein [Ricinus communis]
Length = 458
Score = 468 bits (1204), Expect = e-129, Method: Compositional matrix adjust.
Identities = 236/332 (71%), Positives = 274/332 (82%), Gaps = 17/332 (5%)
Query: 1 MTAEEKILYKLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKN 60
MTAEEK+LYKL+KA+KKEER V+ LKKIEP +SSE THDPEILTPEEHF+FLKMG KCKN
Sbjct: 129 MTAEEKLLYKLKKAQKKEERYVQALKKIEPVDSSETTHDPEILTPEEHFFFLKMGLKCKN 188
Query: 61 YVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEE 120
YVPVGRRGIYQGVILNMHLHWKKHQT++V+VKTFS EEVKEIAAELARLTGGIVL+IHEE
Sbjct: 189 YVPVGRRGIYQGVILNMHLHWKKHQTVQVVVKTFSPEEVKEIAAELARLTGGIVLDIHEE 248
Query: 121 NTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLRAQ 180
NTIIMYRGKNY+QPPTEIMSPRITLSRKKALDKSKYRDGLRAV+ YIP+LEQ+LELL+ Q
Sbjct: 249 NTIIMYRGKNYSQPPTEIMSPRITLSRKKALDKSKYRDGLRAVRNYIPRLEQDLELLKVQ 308
Query: 181 AETRSENRSDAAEDVQNTELDKPDFGSIPSMM---------------ECSENDPTTESLM 225
+ ++E S +AE+ T+ D + G +PS ECSE + + M
Sbjct: 309 SMGKAECGSASAEETLYTD-DGAESGGVPSTPLENSEKLKKITDGQEECSEEESPMDLGM 367
Query: 226 ASDSEDLSDIFETDSETETEEKAELRPLYLDQFDKFPVQNDEEHEDFEEHLRQISIDSRN 285
SDSEDLSDIFETDS+TETE+K + RPLYL++F KFP+Q +EE EDFEEHLRQ+S+DSR
Sbjct: 368 LSDSEDLSDIFETDSDTETEDKVK-RPLYLEEFKKFPIQGNEEPEDFEEHLRQLSVDSRK 426
Query: 286 AKSLGKDEDSSHFDEVDKMFLRAASLLKKQKR 317
+S KD D FDEVD++FLRAASLLKK+KR
Sbjct: 427 VESSEKDSDIPSFDEVDRLFLRAASLLKKKKR 458
>gi|224132018|ref|XP_002321235.1| predicted protein [Populus trichocarpa]
gi|222862008|gb|EEE99550.1| predicted protein [Populus trichocarpa]
Length = 413
Score = 452 bits (1162), Expect = e-124, Method: Compositional matrix adjust.
Identities = 232/335 (69%), Positives = 276/335 (82%), Gaps = 27/335 (8%)
Query: 1 MTAEEKILYKLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKN 60
MTAEEKILYKLRKA++KEER V+ LKKIEPKESSE THDPEILTPEEHF+FLKMG KCKN
Sbjct: 88 MTAEEKILYKLRKAQRKEERFVQALKKIEPKESSEATHDPEILTPEEHFFFLKMGLKCKN 147
Query: 61 YVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEE 120
YVPVGRRGIYQGVILNMHLHWKKHQTLKV+VKTF+ EEVKEIAAELAR TGGIVL+IHEE
Sbjct: 148 YVPVGRRGIYQGVILNMHLHWKKHQTLKVVVKTFTPEEVKEIAAELARFTGGIVLDIHEE 207
Query: 121 NTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLRAQ 180
NTIIMYRGKNY+QPPTEIMSPR+TLSRKKALDKSK RDGLRA+++YIP+L+Q+LELL A+
Sbjct: 208 NTIIMYRGKNYSQPPTEIMSPRVTLSRKKALDKSKCRDGLRALRRYIPRLQQDLELLHAR 267
Query: 181 AETRS-----ENRSDAAEDVQNTE-----LDKPDFGSIPSMMECSENDPTTESLMASDSE 230
A ++ E+RS +++ ++N+E +D+ D E SE+ P T+ +ASDSE
Sbjct: 268 AGGKTDIDGAESRSISSKQLENSEKLKEIIDRQD--------EGSEDGPDTDLGIASDSE 319
Query: 231 DLSDIFETDSETETEEKAELRPLYLDQFDKFPVQNDEEHEDFEEHLRQISIDSRNAKSLG 290
DLSDIFETDS+ +TEE ++ RPLYL++F+KF V+ D E EDFEEHLRQIS+ S+ + G
Sbjct: 320 DLSDIFETDSDADTEETSK-RPLYLEEFEKFSVEADGEPEDFEEHLRQISLGSKKGVTSG 378
Query: 291 K--------DEDSSHFDEVDKMFLRAASLLKKQKR 317
K D DS FDEVD+MFLRAASLLK++KR
Sbjct: 379 KDVDIPTGVDVDSPSFDEVDRMFLRAASLLKRKKR 413
>gi|356498434|ref|XP_003518057.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
chloroplastic-like, partial [Glycine max]
Length = 383
Score = 441 bits (1134), Expect = e-121, Method: Compositional matrix adjust.
Identities = 224/330 (67%), Positives = 266/330 (80%), Gaps = 19/330 (5%)
Query: 1 MTAEEKILYKLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKN 60
MTAEEK LYKL KARKKEER+ E LKKIEP ESSE THDPEILTPEEHF+FLKMG K KN
Sbjct: 56 MTAEEKNLYKLLKARKKEERLCEALKKIEPAESSETTHDPEILTPEEHFFFLKMGLKSKN 115
Query: 61 YVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEE 120
YVPVGRRGIYQGVILNMHLHWKKHQTLKV+VKTFSAEEVKEIAAELARL+GGIVL+IHE+
Sbjct: 116 YVPVGRRGIYQGVILNMHLHWKKHQTLKVVVKTFSAEEVKEIAAELARLSGGIVLDIHED 175
Query: 121 NTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLRAQ 180
NTIIMYRGKNY+QPPTEIMSPR++LSRKKALDKSKYRD LRAV++YIP+LEQELE+LRAQ
Sbjct: 176 NTIIMYRGKNYSQPPTEIMSPRVSLSRKKALDKSKYRDALRAVRRYIPRLEQELEILRAQ 235
Query: 181 AETRSENRSDAAEDVQNTELDKPDFGSIPS-----------MMEC----SENDPTTESLM 225
++ +E+ +DAAE +QN+ + + GSI + MM +E++ S +
Sbjct: 236 FKSSAESNTDAAEAIQNSGRESIESGSISNFQLQNSYKDREMMNVNIGSTEDETDMNSEL 295
Query: 226 ASDSEDLSDIFETDSETETEEKAELRPLYLDQFDKFPVQNDEEHEDFEEHLRQISIDSRN 285
SDS+ LSDIFETDS+TE K E +PLYLD+FD FP Q+D E DFEEH+RQ+S+ S+N
Sbjct: 296 DSDSDKLSDIFETDSDTENFVKEE-KPLYLDEFDNFPEQSDGEMNDFEEHMRQMSLKSKN 354
Query: 286 AKSLGKDEDSSHFDEVDKMFLRAASLLKKQ 315
+ KD++ DEVDK+FL+A S LKK+
Sbjct: 355 ---MEKDDNLPKLDEVDKIFLQATSFLKKK 381
>gi|356501797|ref|XP_003519710.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
chloroplastic-like [Glycine max]
Length = 382
Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust.
Identities = 220/315 (69%), Positives = 260/315 (82%), Gaps = 10/315 (3%)
Query: 1 MTAEEKILYKLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKN 60
MTAEEKILYKL KARKKEER+ E LKKIEP ESSE THDPEILTPEEHF+FLKMG K KN
Sbjct: 76 MTAEEKILYKLLKARKKEERLCEALKKIEPAESSETTHDPEILTPEEHFFFLKMGLKSKN 135
Query: 61 YVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEE 120
YVPVGRRGIYQGVILNMHLHWKKHQTLKV+VKTFSAEEVKEIA ELARL+GGIVL+IHE+
Sbjct: 136 YVPVGRRGIYQGVILNMHLHWKKHQTLKVVVKTFSAEEVKEIATELARLSGGIVLDIHED 195
Query: 121 NTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLRAQ 180
NTIIMYRGKNY+QPPTEIMSPR++LSRKKALDKSKYRD LRAV+++IP+LEQELE+LRAQ
Sbjct: 196 NTIIMYRGKNYSQPPTEIMSPRVSLSRKKALDKSKYRDALRAVRRHIPRLEQELEILRAQ 255
Query: 181 AETRSENRSDAAEDVQNTELDKPDFGSIPSMMECSENDPTTESLMASDSEDLSDIFETDS 240
++ +E+ +DAAE +QN D + C+E++ S + SDS+ LSDIFETDS
Sbjct: 256 FKSSAESNTDAAEAIQNNRERMND------NIGCTEDETDMNSELDSDSDKLSDIFETDS 309
Query: 241 ETETEEKAELRPLYLDQFDKFPVQNDEEHEDFEEHLRQISIDSRNAKSLGKDEDSSHFDE 300
+TE K E +PLYLD+FD FP Q+D E DFEEHLRQ+S+ S+N + K+++ DE
Sbjct: 310 DTENFIKEE-KPLYLDEFDNFPEQSDGEMNDFEEHLRQMSLKSKN---MEKEDNLPKLDE 365
Query: 301 VDKMFLRAASLLKKQ 315
VDK+FL+A S LKK+
Sbjct: 366 VDKIFLQATSFLKKK 380
>gi|357439975|ref|XP_003590265.1| CRM domain-containing protein, putative [Medicago truncatula]
gi|355479313|gb|AES60516.1| CRM domain-containing protein, putative [Medicago truncatula]
Length = 443
Score = 432 bits (1112), Expect = e-119, Method: Compositional matrix adjust.
Identities = 224/334 (67%), Positives = 267/334 (79%), Gaps = 23/334 (6%)
Query: 1 MTAEEKILYKLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKN 60
MT EE+ILYKL KARKKEER+ E LKKIEP ESSE HDPEILTPEEHF+FLKMG K KN
Sbjct: 116 MTTEERILYKLLKARKKEERLREALKKIEPTESSETIHDPEILTPEEHFFFLKMGLKSKN 175
Query: 61 YVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEE 120
YVPVGRRGIYQGVILNMHLHWKKHQTL+V+VKTFSAEEVKEIA ELARLTGGIVL IHEE
Sbjct: 176 YVPVGRRGIYQGVILNMHLHWKKHQTLQVVVKTFSAEEVKEIATELARLTGGIVLGIHEE 235
Query: 121 NTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLRAQ 180
+TIIMYRGKNY+QPPTEIMSPR+TL RKKALDKSKYRDGLRAV++YIPKLEQELE+LRAQ
Sbjct: 236 DTIIMYRGKNYSQPPTEIMSPRVTLPRKKALDKSKYRDGLRAVRRYIPKLEQELEILRAQ 295
Query: 181 AETRSENRSDAAEDVQ-------------NTELDKPDFGSIPSMME----CSENDPTTES 223
++ +E+ ++AAE +Q N +L+K D + +M CSE++ +S
Sbjct: 296 FQSTAESNTEAAEGIQISDKVSVEPSSVSNLQLEKLD--KVGAMFNDNNSCSEDEAHMDS 353
Query: 224 LMASDSEDLSDIFETDSETETEEKAELRPLYLDQFDKFPVQNDEEHEDFEEHLRQISIDS 283
+ S S+ LSDIFETDS+TE K E +PLYLD+F+ FP Q+D + +DFEEHL+QIS +S
Sbjct: 354 DLDSYSDKLSDIFETDSDTEDLVKEE-KPLYLDEFNNFPEQSDGDTDDFEEHLQQISYNS 412
Query: 284 RNAKSLGKDEDSSHFDEVDKMFLRAASLLKKQKR 317
+N + KD D FDEVD++FLRAAS LKK+++
Sbjct: 413 KN---MEKDADLPKFDEVDQIFLRAASFLKKKRK 443
>gi|449458069|ref|XP_004146770.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
chloroplastic-like [Cucumis sativus]
gi|449516505|ref|XP_004165287.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
chloroplastic-like [Cucumis sativus]
Length = 500
Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust.
Identities = 211/333 (63%), Positives = 265/333 (79%), Gaps = 17/333 (5%)
Query: 1 MTAEEKILYKLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKN 60
MT+EEKIL+K+ KARKKE+R+VE L+KIEP +SS+ THDPEILTPEEHFYFLKMG K KN
Sbjct: 169 MTSEEKILFKMNKARKKEKRLVEALEKIEPADSSDTTHDPEILTPEEHFYFLKMGIKGKN 228
Query: 61 YVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEE 120
YVPVGRRGIYQGVILNMHLHWKKHQT+KV+VKTFS EEVKEIAAELARLTGG+VL+IHEE
Sbjct: 229 YVPVGRRGIYQGVILNMHLHWKKHQTVKVVVKTFSPEEVKEIAAELARLTGGLVLDIHEE 288
Query: 121 NTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLRAQ 180
+TIIMYRGKNY+QPPTEIMSPR++LSRKKALDKSKYRDGLRAV+K+IPKLEQEL L++Q
Sbjct: 289 DTIIMYRGKNYSQPPTEIMSPRVSLSRKKALDKSKYRDGLRAVRKHIPKLEQELRFLQSQ 348
Query: 181 AETRSENRSDAAEDVQNTELDKPDFGSIPSM----------------MECSENDPTTESL 224
A+ ++ ++ E +Q T D +I S+ + S++ ++
Sbjct: 349 AKLNCKSNGESVEHMQETVDDTNKSKAISSLNLENLDDSSNAMRSVSKDWSDDSSPIDTG 408
Query: 225 MASDSEDLSDIFETDSETETEEKAELRPLYLDQFDKFPVQNDEEHEDFEEHLRQISIDSR 284
M+SDSEDLSD+FETD ++E +EK E +PL+L +F+ F + ++E ED + LRQIS+DS+
Sbjct: 409 MSSDSEDLSDMFETDIDSEADEKME-KPLFLKEFENFAAETEDEIEDLSDQLRQISMDSK 467
Query: 285 NAKSLGKDEDSSHFDEVDKMFLRAASLLKKQKR 317
AK L D +S FDEVD++FLR+ASLLKK++R
Sbjct: 468 QAKILENDVNSPEFDEVDRLFLRSASLLKKKRR 500
>gi|357439925|ref|XP_003590240.1| CRM domain-containing protein, putative [Medicago truncatula]
gi|355479288|gb|AES60491.1| CRM domain-containing protein, putative [Medicago truncatula]
Length = 472
Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust.
Identities = 224/363 (61%), Positives = 267/363 (73%), Gaps = 52/363 (14%)
Query: 1 MTAEEKILYKLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKN 60
MT EE+ILYKL KARKKEER+ E LKKIEP ESSE HDPEILTPEEHF+FLKMG K KN
Sbjct: 116 MTTEERILYKLLKARKKEERLREALKKIEPTESSETIHDPEILTPEEHFFFLKMGLKSKN 175
Query: 61 YVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEE 120
YVPVGRRGIYQGVILNMHLHWKKHQTL+V+VKTFSAEEVKEIA ELARLTGGIVL IHEE
Sbjct: 176 YVPVGRRGIYQGVILNMHLHWKKHQTLQVVVKTFSAEEVKEIATELARLTGGIVLGIHEE 235
Query: 121 NTIIMYRGKNYAQPPTEIMSPRITLSRKK-----------------------------AL 151
+TIIMYRGKNY+QPPTEIMSPR+TL RKK AL
Sbjct: 236 DTIIMYRGKNYSQPPTEIMSPRVTLPRKKVLHVPKDCLHHTIKDCFTFLFAYFPSLISAL 295
Query: 152 DKSKYRDGLRAVKKYIPKLEQELELLRAQAETRSENRSDAAEDVQ-------------NT 198
DKSKYRDGLRAV++YIPKLEQELE+LRAQ ++ +E+ ++AAE +Q N
Sbjct: 296 DKSKYRDGLRAVRRYIPKLEQELEILRAQFQSTAESNTEAAEGIQISDKVSVEPSSVSNL 355
Query: 199 ELDKPDFGSIPSMME----CSENDPTTESLMASDSEDLSDIFETDSETETEEKAELRPLY 254
+L+K D + +M CSE++ +S + S S+ LSDIFETDS+TE K E +PLY
Sbjct: 356 QLEKLD--KVGAMFNDNNSCSEDEAHMDSDLDSYSDKLSDIFETDSDTEDLVKEE-KPLY 412
Query: 255 LDQFDKFPVQNDEEHEDFEEHLRQISIDSRNAKSLGKDEDSSHFDEVDKMFLRAASLLKK 314
LD+F+ FP Q+D + +DFEEHL+QIS +S+N + KD D FDEVD++FLRAAS LKK
Sbjct: 413 LDEFNNFPEQSDGDTDDFEEHLQQISYNSKN---MEKDADLPKFDEVDQIFLRAASFLKK 469
Query: 315 QKR 317
+++
Sbjct: 470 KRK 472
>gi|297831446|ref|XP_002883605.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297329445|gb|EFH59864.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 1055
Score = 400 bits (1027), Expect = e-109, Method: Compositional matrix adjust.
Identities = 214/322 (66%), Positives = 255/322 (79%), Gaps = 20/322 (6%)
Query: 1 MTAEEKILYKLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKN 60
MTAEEKIL KL KARKKEER++E +KK+EP ES+E THDPEILTPEEHFY+LKMG KCKN
Sbjct: 749 MTAEEKILNKLTKARKKEERLMETMKKLEPSESAETTHDPEILTPEEHFYYLKMGLKCKN 808
Query: 61 YVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEE 120
YVPVGRRGIYQGVILNMHLHWKKHQTL+V++KTF+ +EV EIA ELARLTGGIVL++HE
Sbjct: 809 YVPVGRRGIYQGVILNMHLHWKKHQTLQVVIKTFTPDEVNEIAVELARLTGGIVLDVHEG 868
Query: 121 NTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLRAQ 180
NTIIMYRGKNY QPPTEIMSPRITL RKKALDKSK RD LRAV+KYIP+LEQEL+LL+AQ
Sbjct: 869 NTIIMYRGKNYVQPPTEIMSPRITLPRKKALDKSKCRDALRAVRKYIPRLEQELQLLQAQ 928
Query: 181 AETRSENRSDAAEDVQ--NTELDKPDFGSIPSMMECSENDPTTESLMASDSEDLSDIFET 238
AET+ E + +D+Q + EL K S + + E + S +A+DS DLSDIFET
Sbjct: 929 AETKREYLNVKVDDIQERSDELKKIIERSEECLED-EEEEEDAGSELATDS-DLSDIFET 986
Query: 239 DSETETEEKAELRPLYLDQFDKFP-VQNDEEHEDFEEHLRQISIDSRNAKSLGKDED--S 295
DSE E E+ +RPL+L++F+KFP + N+ E EDF + AKS G++ D S
Sbjct: 987 DSELEDEKT--VRPLFLEEFEKFPAINNNREDEDFGK-----------AKSEGEENDDKS 1033
Query: 296 SHFDEVDKMFLRAASLLKKQKR 317
+FDEVDKMFLRAASLLKK++R
Sbjct: 1034 PNFDEVDKMFLRAASLLKKKRR 1055
>gi|9279724|dbj|BAB01314.1| unnamed protein product [Arabidopsis thaliana]
Length = 1115
Score = 397 bits (1020), Expect = e-108, Method: Compositional matrix adjust.
Identities = 216/329 (65%), Positives = 254/329 (77%), Gaps = 31/329 (9%)
Query: 1 MTAEEKILYKLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKN 60
MT+EEKIL KLRKARKKEER++E +KK+EP ES+E THDPEILTPEEHFY+LKMG KCKN
Sbjct: 806 MTSEEKILNKLRKARKKEERLMETMKKLEPSESAETTHDPEILTPEEHFYYLKMGLKCKN 865
Query: 61 YVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEE 120
YVPVGRRGIYQGVILNMHLHWKKHQTL+V++KTF+ +EVKEIA ELARLTGGIVL++HE
Sbjct: 866 YVPVGRRGIYQGVILNMHLHWKKHQTLQVVIKTFTPDEVKEIAVELARLTGGIVLDVHEG 925
Query: 121 NTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLRAQ 180
NTIIMYRGKNY QPPTEIMSPRITL RKKALDKSK RD LRAV+KYIP+LEQEL+LL+AQ
Sbjct: 926 NTIIMYRGKNYVQPPTEIMSPRITLPRKKALDKSKCRDALRAVRKYIPRLEQELQLLQAQ 985
Query: 181 AETRSENRSDAAEDVQ--NTELDKPDFGSIPSMMECSENDPTTESL-------MASDSED 231
AET+ + + +D Q + EL K ++E SE E +A+DS D
Sbjct: 986 AETKRDYTNVKVDDNQERSEELKK--------IIERSEECLEDEQEEDEAGLELATDS-D 1036
Query: 232 LSDIFETDSETETEEKAELRPLYLDQFDKFPVQNDEEHEDFEEHLRQISIDSRNAKSLGK 291
LSDIFETDSE E + K E RPL+L++F+KFP N+ E EDF D AKS G+
Sbjct: 1037 LSDIFETDSELE-DAKTE-RPLFLEEFEKFPAINNREDEDFG--------DLGKAKSEGE 1086
Query: 292 DED---SSHFDEVDKMFLRAASLLKKQKR 317
+ D S +FDEVDKMFLRAA LLKK++R
Sbjct: 1087 ENDDDKSPNFDEVDKMFLRAAFLLKKKRR 1115
>gi|79417439|ref|NP_189171.2| uncharacterized CRM domain-containing protein [Arabidopsis
thaliana]
gi|75116513|sp|Q67XL4.1|Y3544_ARATH RecName: Full=Uncharacterized CRM domain-containing protein
At3g25440, chloroplastic; Flags: Precursor
gi|51971805|dbj|BAD44567.1| unknown protein [Arabidopsis thaliana]
gi|332643490|gb|AEE77011.1| uncharacterized CRM domain-containing protein [Arabidopsis
thaliana]
Length = 444
Score = 395 bits (1014), Expect = e-107, Method: Compositional matrix adjust.
Identities = 216/322 (67%), Positives = 253/322 (78%), Gaps = 17/322 (5%)
Query: 1 MTAEEKILYKLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKN 60
MT+EEKIL KLRKARKKEER++E +KK+EP ES+E THDPEILTPEEHFY+LKMG KCKN
Sbjct: 135 MTSEEKILNKLRKARKKEERLMETMKKLEPSESAETTHDPEILTPEEHFYYLKMGLKCKN 194
Query: 61 YVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEE 120
YVPVGRRGIYQGVILNMHLHWKKHQTL+V++KTF+ +EVKEIA ELARLTGGIVL++HE
Sbjct: 195 YVPVGRRGIYQGVILNMHLHWKKHQTLQVVIKTFTPDEVKEIAVELARLTGGIVLDVHEG 254
Query: 121 NTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLRAQ 180
NTIIMYRGKNY QPPTEIMSPRITL RKKALDKSK RD LRAV+KYIP+LEQEL+LL+AQ
Sbjct: 255 NTIIMYRGKNYVQPPTEIMSPRITLPRKKALDKSKCRDALRAVRKYIPRLEQELQLLQAQ 314
Query: 181 AETRSENRSDAAEDVQ--NTELDKPDFGSIPSMMECSENDPTTESLMASDSEDLSDIFET 238
AET+ + + +D Q + EL K S + + E D L A+DS DLSDIFET
Sbjct: 315 AETKRDYTNVKVDDNQERSEELKKIIERSEECLEDEQEEDEAGLEL-ATDS-DLSDIFET 372
Query: 239 DSETETEEKAELRPLYLDQFDKFPVQNDEEHEDFEEHLRQISIDSRNAKSLGKDED---S 295
DSE E + K E RPL+L++F+KFP N+ E EDF D AKS G++ D S
Sbjct: 373 DSELE-DAKTE-RPLFLEEFEKFPAINNREDEDFG--------DLGKAKSEGEENDDDKS 422
Query: 296 SHFDEVDKMFLRAASLLKKQKR 317
+FDEVDKMFLRAA LLKK++R
Sbjct: 423 PNFDEVDKMFLRAAFLLKKKRR 444
>gi|357167884|ref|XP_003581379.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
chloroplastic-like [Brachypodium distachyon]
Length = 485
Score = 395 bits (1014), Expect = e-107, Method: Compositional matrix adjust.
Identities = 214/343 (62%), Positives = 249/343 (72%), Gaps = 29/343 (8%)
Query: 1 MTAEEKILYKLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKN 60
MTAEEKILYKL+ ARKKEER++ LKKIEP + SE THDPE+LTPEEHFYFLKMG+K KN
Sbjct: 144 MTAEEKILYKLKLARKKEERLLAALKKIEPNDPSEPTHDPEVLTPEEHFYFLKMGQKSKN 203
Query: 61 YVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEE 120
YVPVGRRGIYQGVILNMHLHWKKHQTL+VIVKTF+ EEVKEIA+ELA L+GGIVL I E
Sbjct: 204 YVPVGRRGIYQGVILNMHLHWKKHQTLQVIVKTFTPEEVKEIASELAILSGGIVLSIQEG 263
Query: 121 NTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLRAQ 180
NTIIMYRGKNYAQPP EIMSP+I L RKKALDKSKYRD LRA+++YIP+LEQELE L AQ
Sbjct: 264 NTIIMYRGKNYAQPPPEIMSPKIALPRKKALDKSKYRDRLRALRRYIPRLEQELEDLHAQ 323
Query: 181 AETRSENRSDAA-------EDVQNTELDKPDFGS----------IPSMMECSE------- 216
+ +R +A D N+ K D S + +E SE
Sbjct: 324 MKLSGGHRGQSAVKDVTFVSDCTNSMSAKNDSSSSIHKRSVSDLLSENIERSEMLEDGNT 383
Query: 217 ---NDPTTESLMASDSEDLSDIFETDSETETEEKAELRPLYLDQFDKF-PVQNDEEHEDF 272
+D +ES+ S+SEDLSDIFETDSE + E+ E RPLYLD DKF P ND E +DF
Sbjct: 384 EDDDDSASESITCSESEDLSDIFETDSEEQVEDTKE-RPLYLDSLDKFLPESNDNEPDDF 442
Query: 273 EEHLRQISIDSRNAKSLGKDEDSSHFDEVDKMFLRAASLLKKQ 315
EEHLR+I+ S S K+ S DE+DK+FLRA+SLLKK+
Sbjct: 443 EEHLRKIASLSDKTDSPAKELKISELDEIDKIFLRASSLLKKR 485
>gi|145332683|ref|NP_001078207.1| uncharacterized CRM domain-containing protein [Arabidopsis
thaliana]
gi|332643491|gb|AEE77012.1| uncharacterized CRM domain-containing protein [Arabidopsis
thaliana]
Length = 380
Score = 393 bits (1010), Expect = e-107, Method: Compositional matrix adjust.
Identities = 216/322 (67%), Positives = 253/322 (78%), Gaps = 17/322 (5%)
Query: 1 MTAEEKILYKLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKN 60
MT+EEKIL KLRKARKKEER++E +KK+EP ES+E THDPEILTPEEHFY+LKMG KCKN
Sbjct: 71 MTSEEKILNKLRKARKKEERLMETMKKLEPSESAETTHDPEILTPEEHFYYLKMGLKCKN 130
Query: 61 YVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEE 120
YVPVGRRGIYQGVILNMHLHWKKHQTL+V++KTF+ +EVKEIA ELARLTGGIVL++HE
Sbjct: 131 YVPVGRRGIYQGVILNMHLHWKKHQTLQVVIKTFTPDEVKEIAVELARLTGGIVLDVHEG 190
Query: 121 NTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLRAQ 180
NTIIMYRGKNY QPPTEIMSPRITL RKKALDKSK RD LRAV+KYIP+LEQEL+LL+AQ
Sbjct: 191 NTIIMYRGKNYVQPPTEIMSPRITLPRKKALDKSKCRDALRAVRKYIPRLEQELQLLQAQ 250
Query: 181 AETRSENRSDAAEDVQ--NTELDKPDFGSIPSMMECSENDPTTESLMASDSEDLSDIFET 238
AET+ + + +D Q + EL K S + + E D L A+DS DLSDIFET
Sbjct: 251 AETKRDYTNVKVDDNQERSEELKKIIERSEECLEDEQEEDEAGLEL-ATDS-DLSDIFET 308
Query: 239 DSETETEEKAELRPLYLDQFDKFPVQNDEEHEDFEEHLRQISIDSRNAKSLGKDED---S 295
DSE E + K E RPL+L++F+KFP N+ E EDF D AKS G++ D S
Sbjct: 309 DSELE-DAKTE-RPLFLEEFEKFPAINNREDEDFG--------DLGKAKSEGEENDDDKS 358
Query: 296 SHFDEVDKMFLRAASLLKKQKR 317
+FDEVDKMFLRAA LLKK++R
Sbjct: 359 PNFDEVDKMFLRAAFLLKKKRR 380
>gi|115459160|ref|NP_001053180.1| Os04g0492900 [Oryza sativa Japonica Group]
gi|21740788|emb|CAD41533.1| OSJNBb0091E11.2 [Oryza sativa Japonica Group]
gi|38346227|emb|CAE02049.2| OJ990528_30.7 [Oryza sativa Japonica Group]
gi|90265163|emb|CAH67731.1| H0522A01.2 [Oryza sativa Indica Group]
gi|113564751|dbj|BAF15094.1| Os04g0492900 [Oryza sativa Japonica Group]
gi|116310744|emb|CAH67539.1| H0425E08.7 [Oryza sativa Indica Group]
gi|125548841|gb|EAY94663.1| hypothetical protein OsI_16441 [Oryza sativa Indica Group]
Length = 479
Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust.
Identities = 210/344 (61%), Positives = 250/344 (72%), Gaps = 30/344 (8%)
Query: 1 MTAEEKILYKLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKN 60
MTAEEKILYKL+ AR KEER+V L KIEP + SE THDPE+LTPEEHFYFLKMG+K KN
Sbjct: 137 MTAEEKILYKLKLARNKEERLVAALTKIEPDDPSEPTHDPEVLTPEEHFYFLKMGQKSKN 196
Query: 61 YVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEE 120
YVPVGRRGIYQGVILNMHLHWKKHQTL+VIVKTF+ +EVKEIA+ELARL+GGIVL+I E
Sbjct: 197 YVPVGRRGIYQGVILNMHLHWKKHQTLQVIVKTFTPDEVKEIASELARLSGGIVLDIQEG 256
Query: 121 NTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLRAQ 180
NTIIMYRGKNYAQPP EIMSP++TL RKKALDKSKYR+ LRA+++YIP+LEQEL L AQ
Sbjct: 257 NTIIMYRGKNYAQPPPEIMSPKVTLPRKKALDKSKYRERLRALRRYIPRLEQELVDLHAQ 316
Query: 181 AE-TRSENRSDAAEDVQNTELDKPDFGSIPSMMECS----------------------EN 217
+ R +AAED+ D + S CS EN
Sbjct: 317 MKLARDYKGQNAAEDITCIS-DSVNSTSAKEYSSCSVRKRSVSDLLSESIEGSGRLEDEN 375
Query: 218 -----DPTTESLMASDSEDLSDIFETDSETETEEKAELRPLYLDQFDKFPVQ-NDEEHED 271
D +ES+ S+SEDLSDIFETDSE E ++++ +PLYLD+ DKFP + ND E +D
Sbjct: 376 YEVSADSASESITYSESEDLSDIFETDSEEEQVQESKEQPLYLDKLDKFPSENNDNEPDD 435
Query: 272 FEEHLRQISIDSRNAKSLGKDEDSSHFDEVDKMFLRAASLLKKQ 315
FEEHLR+I+ S S K+ S DE+DK+FLRA+SLLKK+
Sbjct: 436 FEEHLRKIASLSDRTDSSAKELKVSELDEIDKIFLRASSLLKKR 479
>gi|212723506|ref|NP_001132081.1| uncharacterized protein LOC100193495 [Zea mays]
gi|194693368|gb|ACF80768.1| unknown [Zea mays]
gi|414586598|tpg|DAA37169.1| TPA: hypothetical protein ZEAMMB73_229116 [Zea mays]
gi|414586599|tpg|DAA37170.1| TPA: hypothetical protein ZEAMMB73_229116 [Zea mays]
Length = 485
Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust.
Identities = 210/343 (61%), Positives = 255/343 (74%), Gaps = 29/343 (8%)
Query: 1 MTAEEKILYKLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKN 60
MTAEEKILYKL+ ARKKEER+V LKKIEP++ SE THDPE+LTPEEHFYFLKMG+KCKN
Sbjct: 144 MTAEEKILYKLKLARKKEERLVVALKKIEPEDPSEPTHDPEVLTPEEHFYFLKMGQKCKN 203
Query: 61 YVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEE 120
YVPVGRRGIYQGVILNMHLHWKKHQTL+VIVKTF+ EEVKEIA ELA L+GGIVL+I +
Sbjct: 204 YVPVGRRGIYQGVILNMHLHWKKHQTLQVIVKTFTPEEVKEIAIELATLSGGIVLDIQDG 263
Query: 121 NTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLRAQ 180
NTIIMYRGKNYAQPP EIMSP+++LSRKKALDKSKY + LRA+++YIP+LEQELE L AQ
Sbjct: 264 NTIIMYRGKNYAQPPPEIMSPKVSLSRKKALDKSKYMEKLRALRRYIPRLEQELEDLHAQ 323
Query: 181 AETRSENRSDAA--------EDVQNTELDKPDFGSIPS---------MMECS-------- 215
+ E++ A + + + K GSI + +E S
Sbjct: 324 MKLAGEHQGQNAGKHVASISHNTNSMPVRKEPCGSIRNKTVSDLLSETVEGSKRLEDESS 383
Query: 216 --ENDPTTESLMASDSEDLSDIFETDSETETEEKAELRPLYLDQFDKFPV-QNDEEHEDF 272
E+D +ESL ++SEDLSDIFET+SE + E+ + RPLYLD+ DKFP +ND E +DF
Sbjct: 384 AIEDDSASESLSFTESEDLSDIFETESEEQEEDNKD-RPLYLDRLDKFPSGKNDNEPDDF 442
Query: 273 EEHLRQISIDSRNAKSLGKDEDSSHFDEVDKMFLRAASLLKKQ 315
EEHLR+I+ S S K+ S DE+DK+FLRA+SLLKK+
Sbjct: 443 EEHLRRIASLSDKTDSPSKELKVSELDEIDKIFLRASSLLKKR 485
>gi|238007578|gb|ACR34824.1| unknown [Zea mays]
gi|414586597|tpg|DAA37168.1| TPA: hypothetical protein ZEAMMB73_229116 [Zea mays]
Length = 342
Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust.
Identities = 210/343 (61%), Positives = 255/343 (74%), Gaps = 29/343 (8%)
Query: 1 MTAEEKILYKLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKN 60
MTAEEKILYKL+ ARKKEER+V LKKIEP++ SE THDPE+LTPEEHFYFLKMG+KCKN
Sbjct: 1 MTAEEKILYKLKLARKKEERLVVALKKIEPEDPSEPTHDPEVLTPEEHFYFLKMGQKCKN 60
Query: 61 YVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEE 120
YVPVGRRGIYQGVILNMHLHWKKHQTL+VIVKTF+ EEVKEIA ELA L+GGIVL+I +
Sbjct: 61 YVPVGRRGIYQGVILNMHLHWKKHQTLQVIVKTFTPEEVKEIAIELATLSGGIVLDIQDG 120
Query: 121 NTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLRAQ 180
NTIIMYRGKNYAQPP EIMSP+++LSRKKALDKSKY + LRA+++YIP+LEQELE L AQ
Sbjct: 121 NTIIMYRGKNYAQPPPEIMSPKVSLSRKKALDKSKYMEKLRALRRYIPRLEQELEDLHAQ 180
Query: 181 AETRSENRSDAA--------EDVQNTELDKPDFGSIPS---------MMECS-------- 215
+ E++ A + + + K GSI + +E S
Sbjct: 181 MKLAGEHQGQNAGKHVASISHNTNSMPVRKEPCGSIRNKTVSDLLSETVEGSKRLEDESS 240
Query: 216 --ENDPTTESLMASDSEDLSDIFETDSETETEEKAELRPLYLDQFDKFPV-QNDEEHEDF 272
E+D +ESL ++SEDLSDIFET+SE + E+ + RPLYLD+ DKFP +ND E +DF
Sbjct: 241 AIEDDSASESLSFTESEDLSDIFETESEEQEEDNKD-RPLYLDRLDKFPSGKNDNEPDDF 299
Query: 273 EEHLRQISIDSRNAKSLGKDEDSSHFDEVDKMFLRAASLLKKQ 315
EEHLR+I+ S S K+ S DE+DK+FLRA+SLLKK+
Sbjct: 300 EEHLRRIASLSDKTDSPSKELKVSELDEIDKIFLRASSLLKKR 342
>gi|242073570|ref|XP_002446721.1| hypothetical protein SORBIDRAFT_06g021160 [Sorghum bicolor]
gi|241937904|gb|EES11049.1| hypothetical protein SORBIDRAFT_06g021160 [Sorghum bicolor]
Length = 484
Score = 373 bits (957), Expect = e-101, Method: Compositional matrix adjust.
Identities = 208/345 (60%), Positives = 250/345 (72%), Gaps = 33/345 (9%)
Query: 1 MTAEEKILYKLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKN 60
MTAEEKILYKL+ ARKKEER+V LKKIEP++ SE THDPE+LTPEEHFYFLKMG+KCKN
Sbjct: 143 MTAEEKILYKLKLARKKEERLVAALKKIEPEDPSEPTHDPEVLTPEEHFYFLKMGQKCKN 202
Query: 61 YVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEE 120
YVPVGRRGIYQGVILNMHLHWKKHQTL+VIVKTF+ EEVKEIA ELARL+GGIVL+I +
Sbjct: 203 YVPVGRRGIYQGVILNMHLHWKKHQTLQVIVKTFTPEEVKEIATELARLSGGIVLDIQDG 262
Query: 121 NTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLRAQ 180
NTIIMYRGKNYAQPP EIMSP+++LSRKKALDKSKY + LRA+++YIP+LEQELE L AQ
Sbjct: 263 NTIIMYRGKNYAQPPPEIMSPKVSLSRKKALDKSKYMEKLRALRRYIPRLEQELEDLHAQ 322
Query: 181 AETRSENRSDAAEDVQNTELDKPDFGSIPSMME-CSENDPTTESLMASDS---------- 229
+ E++ + ++ D S+P+ E CS T S + S S
Sbjct: 323 MKLAGEHKGQSVG--KHIASISHDTNSVPARKEPCSSVHSKTVSDLLSGSVEGSKRLEDE 380
Query: 230 ------------------EDLSDIFETDSETETEEKAELRPLYLDQFDKFPVQ-NDEEHE 270
EDLSDIFET+SE + E+K + PLYLD+ DKFP + ND E +
Sbjct: 381 SSEVEDDSASESLSFSESEDLSDIFETESEEQEEDKKD-HPLYLDRLDKFPSEKNDNEPD 439
Query: 271 DFEEHLRQISIDSRNAKSLGKDEDSSHFDEVDKMFLRAASLLKKQ 315
DFEEHLR+I+ S S K+ S DE+DK+FLRA+SLLKK+
Sbjct: 440 DFEEHLRKIASLSDKTDSPSKELKVSELDEIDKIFLRASSLLKKR 484
>gi|125590852|gb|EAZ31202.1| hypothetical protein OsJ_15301 [Oryza sativa Japonica Group]
Length = 484
Score = 364 bits (934), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 201/349 (57%), Positives = 241/349 (69%), Gaps = 35/349 (10%)
Query: 1 MTAEEKILYKLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKN 60
MTAEEKILYKL+ AR KEER+V L KIEP + SE THDPE+LTPEEHFYFLKMG+K KN
Sbjct: 137 MTAEEKILYKLKLARNKEERLVAALTKIEPDDPSEPTHDPEVLTPEEHFYFLKMGQKSKN 196
Query: 61 YVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEE 120
YVPVGRRGIYQGVILNMHLHWKKHQTL+VIVKTF+ +EVKEIA+ELARL+GGIVL+I E
Sbjct: 197 YVPVGRRGIYQGVILNMHLHWKKHQTLQVIVKTFTPDEVKEIASELARLSGGIVLDIQEG 256
Query: 121 NTIIMYRGKNYAQPPTEIMSPRITLSRKKA-----LDKSKYRDGLRAVKKYIPKLEQELE 175
NTIIMYRGKNYAQPP EIMSP++TL RKK + RA+++YIP+LEQEL
Sbjct: 257 NTIIMYRGKNYAQPPPEIMSPKVTLPRKKWKVLQHWINQNTENASRALRRYIPRLEQELV 316
Query: 176 LLRAQAE-TRSENRSDAAEDVQNTELDKPDFGSIPSMMECS------------------- 215
L AQ + R +AAED+ D + S CS
Sbjct: 317 DLHAQMKLARDYKGQNAAEDITCIS-DSVNSTSAKEYSSCSVRKRSVSDLLSESIEGSGR 375
Query: 216 ---EN-----DPTTESLMASDSEDLSDIFETDSETETEEKAELRPLYLDQFDKFPVQ-ND 266
EN D +ES+ S+SEDLSDIFETDSE E ++++ +PLYLD+ DKFP + ND
Sbjct: 376 LEDENYEVSADSASESITYSESEDLSDIFETDSEEEQVQESKEQPLYLDKLDKFPSENND 435
Query: 267 EEHEDFEEHLRQISIDSRNAKSLGKDEDSSHFDEVDKMFLRAASLLKKQ 315
E +DFEEHLR+I+ S S K+ S DE+DK+FLRA+SLLKK+
Sbjct: 436 NEPDDFEEHLRKIASLSDRTDSSAKELKVSELDEIDKIFLRASSLLKKR 484
>gi|356560779|ref|XP_003548665.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized CRM
domain-containing protein At3g25440, chloroplastic-like
[Glycine max]
Length = 273
Score = 326 bits (836), Expect = 9e-87, Method: Compositional matrix adjust.
Identities = 171/271 (63%), Positives = 209/271 (77%), Gaps = 23/271 (8%)
Query: 11 LRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRRGIY 70
L KA+KK++R+ E LKKIEP +SSE THDPEIL PEEHF+FLKMG K KN VPVGRRGIY
Sbjct: 25 LTKAQKKKKRLCEALKKIEPAKSSETTHDPEILXPEEHFFFLKMGLKRKNNVPVGRRGIY 84
Query: 71 QGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEENTIIMYRGKN 130
QGVIL+MHLH KKHQTLKV VKTFSA EVKEIAAELARL+GGIVL+IHE+NTIIMYRGKN
Sbjct: 85 QGVILSMHLHXKKHQTLKV-VKTFSAAEVKEIAAELARLSGGIVLDIHEDNTIIMYRGKN 143
Query: 131 YAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLRAQAETRSENRSD 190
Y+QPPT+IMSPR++LSRKKALDKSKYR LEQEL +LRAQ ++ +E++++
Sbjct: 144 YSQPPTQIMSPRVSLSRKKALDKSKYR------------LEQELAILRAQFKSSAESKTE 191
Query: 191 AAEDVQNTELDKPDFGSIPSMMECSENDPTTESLMASDSEDLSDIFETDSETETEEKAEL 250
AAE +QN+ + +E +++ S + SDS+ LSDIFETDS+TE E
Sbjct: 192 AAEAIQNSGRES---------IESGKDETDMNSELDSDSDKLSDIFETDSDTENFVNEE- 241
Query: 251 RPLYLDQFDKFPVQNDEEHEDFEEHLRQISI 281
+PL LD FD FP Q++ E DFEEHL+Q+S+
Sbjct: 242 KPLNLDDFDNFPEQSNGEMNDFEEHLQQMSL 272
>gi|326525483|dbj|BAJ88788.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 340
Score = 193 bits (491), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 97/172 (56%), Positives = 123/172 (71%), Gaps = 2/172 (1%)
Query: 4 EEKILYKLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKNYVP 63
E +I YKL KA++KEE ++E L+K E + E HDPEILT EE FY + G K KNYVP
Sbjct: 134 EVRIRYKLEKAKRKEEWLIEKLRKYEAPRAPEPVHDPEILTEEEKFYLKRTGEKKKNYVP 193
Query: 64 VGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEENTI 123
VGRRG++ GV+LNMHLHWKKH+T+KV+ K +V E A ELARL+ G V++I NTI
Sbjct: 194 VGRRGVFGGVVLNMHLHWKKHETMKVVCKPCRPGQVYEYAEELARLSKGTVIDIKPNNTI 253
Query: 124 IMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELE 175
I YRGKNY QP ++MSP TLS++KAL+K +Y L K+I +LEQELE
Sbjct: 254 IFYRGKNYVQP--KVMSPPDTLSKQKALEKYRYEQSLEHTSKFIEQLEQELE 303
>gi|115467732|ref|NP_001057465.1| Os06g0304500 [Oryza sativa Japonica Group]
gi|113595505|dbj|BAF19379.1| Os06g0304500 [Oryza sativa Japonica Group]
gi|125596971|gb|EAZ36751.1| hypothetical protein OsJ_21087 [Oryza sativa Japonica Group]
Length = 348
Score = 191 bits (484), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 103/204 (50%), Positives = 134/204 (65%), Gaps = 3/204 (1%)
Query: 4 EEKILYKLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKNYVP 63
E +I YKL KA++KEE ++E L+K E S E HDPEILT EE FY + G K KNYVP
Sbjct: 143 EVRIRYKLEKAKRKEEWLIEKLRKYEVPRSPEPVHDPEILTEEEKFYLKRTGEKKKNYVP 202
Query: 64 VGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEENTI 123
VGRRG++ GV+LNMHLHWKKH+T+KVI K +V E A EL RL+ G V++I NTI
Sbjct: 203 VGRRGVFGGVVLNMHLHWKKHETVKVICKPCRPGQVYEYAEELTRLSKGTVIDIKPNNTI 262
Query: 124 IMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLRAQAET 183
I YRGKNY QP ++MSP TLS++KAL+K +Y L ++I KLE+ELE +
Sbjct: 263 IFYRGKNYVQP--KVMSPPDTLSKQKALEKYRYEQSLEHTSQFIEKLEKELEDYQKHVAL 320
Query: 184 RSENRSDAAEDVQNTELDKPDFGS 207
+NR + E + + E + D S
Sbjct: 321 -FKNRGETLETISSEETNVDDLTS 343
>gi|162459283|ref|NP_001105859.1| LOC732768 [Zea mays]
gi|89212802|gb|ABD63903.1| CFM6 [Zea mays]
gi|413918693|gb|AFW58625.1| hypothetical protein ZEAMMB73_217436 [Zea mays]
Length = 338
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 102/203 (50%), Positives = 136/203 (66%), Gaps = 5/203 (2%)
Query: 4 EEKILYKLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKNYVP 63
E +I YKL KA++KEE ++E L+K E + E HDPEILT EE FY + G K KNYVP
Sbjct: 131 EVRIRYKLEKAKRKEEWLIEKLRKYEVPRTPEPVHDPEILTEEEKFYLKRTGEKKKNYVP 190
Query: 64 VGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEENTI 123
VGRRG++ GV+LNMHLHWKKH+T+KV+ K +V E A EL RL+ G V++I NTI
Sbjct: 191 VGRRGVFGGVVLNMHLHWKKHETVKVVCKPCRPGQVYEYAEELTRLSKGTVIDIKPNNTI 250
Query: 124 IMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLRAQ-AE 182
+ YRGKNY QP ++MSP TLS++KAL+K +Y L ++I KLE+ELE + A
Sbjct: 251 MFYRGKNYVQP--KVMSPPETLSKQKALEKYRYLQSLEHTSQFIEKLEKELEDYKKHVAL 308
Query: 183 TRSENRSDAAEDVQN--TELDKP 203
++ N+ A E + N T +D P
Sbjct: 309 FKNHNKGVAIEKISNEDTTVDDP 331
>gi|357124470|ref|XP_003563923.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
chloroplastic-like [Brachypodium distachyon]
Length = 337
Score = 188 bits (478), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 95/172 (55%), Positives = 122/172 (70%), Gaps = 2/172 (1%)
Query: 4 EEKILYKLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKNYVP 63
E +I YKL KA++KEE ++E L+K E E HDPEILT EE FY + G K KNYVP
Sbjct: 131 EVRIRYKLEKAKRKEEWLIEKLRKYEVPRVPEPVHDPEILTEEEKFYLKRTGEKKKNYVP 190
Query: 64 VGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEENTI 123
VGRRG++ GV+LNMHLHWKKH+T+KV+ K +V E A ELARL+ G V++I NTI
Sbjct: 191 VGRRGVFGGVVLNMHLHWKKHETMKVVCKPCRPGQVYEYAEELARLSKGTVIDIKPNNTI 250
Query: 124 IMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELE 175
I YRGKNY QP ++MSP TLS++KAL+K +Y L ++I +LE+ELE
Sbjct: 251 IFYRGKNYVQP--KVMSPPDTLSKQKALEKYRYEQSLEHTSQFIEQLEKELE 300
>gi|225444203|ref|XP_002270373.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
chloroplastic [Vitis vinifera]
gi|296089227|emb|CBI38999.3| unnamed protein product [Vitis vinifera]
Length = 269
Score = 184 bits (468), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 97/173 (56%), Positives = 124/173 (71%), Gaps = 4/173 (2%)
Query: 4 EEKILYKLRKARKKEERIVEGLKKIE-PKESSEMTHDPEILTPEEHFYFLKMGRKCKNYV 62
E +I YKL KA++KEE ++E L+K + PK +E +DPEILT EE FY + G K KNYV
Sbjct: 83 EVRIRYKLEKAKRKEEWLIEKLRKFDIPKAPTE-AYDPEILTEEEKFYLKRTGEKKKNYV 141
Query: 63 PVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEENT 122
PVGRRG++ GV+LNMHLHWKKH+T+KVI K +V E A ELARL+ GI+++I NT
Sbjct: 142 PVGRRGVFGGVVLNMHLHWKKHETVKVICKPCKVGQVYEYAEELARLSKGIMIDIKPNNT 201
Query: 123 IIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELE 175
II YRGKNY QP ++MSP TLS+ KAL+K +Y L ++I KLE ELE
Sbjct: 202 IIFYRGKNYVQP--QVMSPPDTLSKSKALEKYRYEQSLEHTSQFIEKLENELE 252
>gi|242076260|ref|XP_002448066.1| hypothetical protein SORBIDRAFT_06g020410 [Sorghum bicolor]
gi|241939249|gb|EES12394.1| hypothetical protein SORBIDRAFT_06g020410 [Sorghum bicolor]
Length = 338
Score = 184 bits (467), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 96/202 (47%), Positives = 131/202 (64%), Gaps = 4/202 (1%)
Query: 4 EEKILYKLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKNYVP 63
E +I YKL KA++KEE ++E L+K + + E HDPEILT EE FY + G K KNYVP
Sbjct: 132 EVRIRYKLEKAKRKEEWLIEKLRKYDVPRTPEPVHDPEILTEEEKFYLKRTGEKKKNYVP 191
Query: 64 VGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEENTI 123
VGRRG++ GV+LNMHLHWK H+T+KV+ K +V E A EL RL+ G +++I NTI
Sbjct: 192 VGRRGVFGGVVLNMHLHWKNHETVKVVCKPCRPGQVYEYAEELTRLSKGTIIDIKPNNTI 251
Query: 124 IMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLRAQAET 183
+ YRGKNY QP ++MSP TLS++KAL+K +Y L ++I KLE+ELE +
Sbjct: 252 MFYRGKNYVQP--QVMSPPDTLSKQKALEKYRYLQSLEHTSQFIEKLEKELEDYKKHVAL 309
Query: 184 RSENRSDAAEDVQN--TELDKP 203
A+E + N + +D P
Sbjct: 310 FKNREGVASEKISNEHSTVDDP 331
>gi|224128874|ref|XP_002328988.1| predicted protein [Populus trichocarpa]
gi|222839222|gb|EEE77573.1| predicted protein [Populus trichocarpa]
Length = 342
Score = 184 bits (466), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 98/191 (51%), Positives = 130/191 (68%), Gaps = 3/191 (1%)
Query: 4 EEKILYKLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKNYVP 63
E +I YKL KA++KE ++E L+K+E ++ +DPEILT EE Y + G K KNYVP
Sbjct: 140 EVRIRYKLEKAKRKEAWLIEKLRKLEVPKTPGEAYDPEILTEEEKHYLKRTGEKKKNYVP 199
Query: 64 VGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEENTI 123
VGRRG++ GV+LNMHLHWKKH+T+KV K ++ E A ELARL+ GI ++I +NTI
Sbjct: 200 VGRRGVFGGVVLNMHLHWKKHETVKVTCKPCKPGQIDEYAEELARLSKGIAIDIRPDNTI 259
Query: 124 IMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLRAQAET 183
I YRGKNY QP +IMSP TLS+ KAL+K +Y L ++I KLE+ELE +
Sbjct: 260 IFYRGKNYVQP--KIMSPPDTLSKDKALEKYRYEQSLEHTSQFIEKLEKELENYQEHV-V 316
Query: 184 RSENRSDAAED 194
R +NR +AA D
Sbjct: 317 RYKNRKEAAVD 327
>gi|356524301|ref|XP_003530768.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
chloroplastic-like [Glycine max]
Length = 282
Score = 183 bits (465), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 98/192 (51%), Positives = 127/192 (66%), Gaps = 2/192 (1%)
Query: 4 EEKILYKLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKNYVP 63
E +I YKL KA++KE +VE L+K + +S T DPEILT EE Y + G K K+YVP
Sbjct: 86 EVRITYKLEKAKRKETWLVEKLRKFDVPKSPPETFDPEILTEEERHYLKRTGEKKKHYVP 145
Query: 64 VGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEENTI 123
VGRRG++ GV+LNMHLHWK H+T+KVI K +V E A ELARL+ GIV++I NTI
Sbjct: 146 VGRRGVFGGVVLNMHLHWKNHETVKVICKPCKPGQVHEYAEELARLSKGIVIDIKPNNTI 205
Query: 124 IMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLRAQAET 183
I YRGKNY QP E+MSP TLS+ KAL+K +Y L ++I +LE+ELE
Sbjct: 206 IFYRGKNYVQP--EVMSPPNTLSKVKALEKYRYEQSLEHTSQFIERLEKELEEYHQHLAK 263
Query: 184 RSENRSDAAEDV 195
+ + D A+DV
Sbjct: 264 FKKGKEDNAKDV 275
>gi|359478175|ref|XP_002266278.2| PREDICTED: uncharacterized protein LOC100250974 [Vitis vinifera]
Length = 711
Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 96/176 (54%), Positives = 124/176 (70%), Gaps = 4/176 (2%)
Query: 2 TAEEKILYKLRKARKKEERIVEGLKKIE-PKESSEMTHDPEILTPEEHFYFLKMGRKCKN 60
AEE+I +KL KAR KE ++E LK+ E PK + P LT EE FY KM +K N
Sbjct: 413 NAEERIKFKLEKARIKEALLIERLKRYEVPKLQGPIVQ-PVNLTGEERFYMKKMAQKRSN 471
Query: 61 YVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEE 120
YVPVGRRG++ GVILNMH+HWKKH+T+KVI K +V E A E+ARL+GG ++I +
Sbjct: 472 YVPVGRRGVFGGVILNMHMHWKKHETVKVICKPCKPGQVHEYANEIARLSGGTPIQIIGD 531
Query: 121 NTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELEL 176
+TII YRGKNY QP E+MSP TLS+K+AL+KSKY L +V+++I E+ELEL
Sbjct: 532 DTIIFYRGKNYVQP--EVMSPIDTLSKKRALEKSKYEQSLESVRRFIAIAEKELEL 585
>gi|357131757|ref|XP_003567501.1| PREDICTED: uncharacterized protein LOC100829186 [Brachypodium
distachyon]
Length = 402
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 105/246 (42%), Positives = 153/246 (62%), Gaps = 10/246 (4%)
Query: 2 TAEEKILYKLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKNY 61
TAE ++ YK+ KA+ KE ++E LK+ E ++ P+ L EE FY K+ +K NY
Sbjct: 134 TAEARLKYKIEKAKLKEAMLIEKLKRYEVAKAEGPVAKPDDLNGEERFYLKKVSQKKSNY 193
Query: 62 VPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEEN 121
VP+GRRG++ GVILNMHLHWKKH+T+KVI K +++E A+E+ARL+GG+ + I +
Sbjct: 194 VPIGRRGVFGGVILNMHLHWKKHETVKVICKPCKPGQIQEYASEIARLSGGVPINIVGND 253
Query: 122 TIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLRAQA 181
T++ YRGK+Y QP ++MSP TLS+KKAL+KSKY L V+++I E+ELEL
Sbjct: 254 TVVFYRGKDYVQP--DVMSPIDTLSKKKALEKSKYEQSLETVRRFIAVSEKELELYYQHV 311
Query: 182 ETRSENRSDAAEDVQNTELDKPDFGSIPSM-MECSENDPTTESLMASDSEDLSDIFETDS 240
+ +S QN +L D S ME + S++AS++ SDI TD+
Sbjct: 312 ALYGKPQS------QNADLIYGDDRKASSREMEELNHGKDQGSILASNTNGFSDIDITDT 365
Query: 241 ETETEE 246
+E+EE
Sbjct: 366 -SESEE 370
>gi|242055631|ref|XP_002456961.1| hypothetical protein SORBIDRAFT_03g046420 [Sorghum bicolor]
gi|241928936|gb|EES02081.1| hypothetical protein SORBIDRAFT_03g046420 [Sorghum bicolor]
Length = 405
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 93/175 (53%), Positives = 124/175 (70%), Gaps = 2/175 (1%)
Query: 2 TAEEKILYKLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKNY 61
T E ++ YK+ KA+ KE R+VE LKK E ++ P+ L+ EE FY K+ +K NY
Sbjct: 132 TPEARLKYKIEKAKLKEVRLVEKLKKYEVAKAQGPMAKPDDLSGEERFYLKKVSQKKSNY 191
Query: 62 VPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEEN 121
VPVGRRG++ GVILNMHLHWKKH+T+KVI K +++E A E+ARL+GGI + I ++
Sbjct: 192 VPVGRRGVFGGVILNMHLHWKKHETVKVICKPCKPGQIQEYANEIARLSGGIPVNIIGDD 251
Query: 122 TIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELEL 176
TI+ YRGKNY QP E+MSP TLS+KKAL+KSKY L V+++I E+ELEL
Sbjct: 252 TIVFYRGKNYVQP--EVMSPIDTLSKKKALEKSKYEQSLETVRRFIAISEKELEL 304
>gi|297743805|emb|CBI36688.3| unnamed protein product [Vitis vinifera]
Length = 332
Score = 180 bits (457), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 96/176 (54%), Positives = 124/176 (70%), Gaps = 4/176 (2%)
Query: 2 TAEEKILYKLRKARKKEERIVEGLKKIE-PKESSEMTHDPEILTPEEHFYFLKMGRKCKN 60
AEE+I +KL KAR KE ++E LK+ E PK + P LT EE FY KM +K N
Sbjct: 34 NAEERIKFKLEKARIKEALLIERLKRYEVPKLQGPIVQ-PVNLTGEERFYMKKMAQKRSN 92
Query: 61 YVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEE 120
YVPVGRRG++ GVILNMH+HWKKH+T+KVI K +V E A E+ARL+GG ++I +
Sbjct: 93 YVPVGRRGVFGGVILNMHMHWKKHETVKVICKPCKPGQVHEYANEIARLSGGTPIQIIGD 152
Query: 121 NTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELEL 176
+TII YRGKNY QP E+MSP TLS+K+AL+KSKY L +V+++I E+ELEL
Sbjct: 153 DTIIFYRGKNYVQP--EVMSPIDTLSKKRALEKSKYEQSLESVRRFIAIAEKELEL 206
>gi|356544514|ref|XP_003540695.1| PREDICTED: uncharacterized protein LOC100796393 [Glycine max]
Length = 426
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 93/175 (53%), Positives = 123/175 (70%), Gaps = 2/175 (1%)
Query: 2 TAEEKILYKLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKNY 61
AEE+I YK+ KAR KE ++E LK+ E ++ P+ LT EE FY KM +K NY
Sbjct: 131 CAEERIKYKIEKARIKEALLIERLKRYEVPKAQGPVVKPDDLTGEERFYLKKMAQKRSNY 190
Query: 62 VPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEEN 121
+ +GRRG++ GV+LNMH+HWKKH+T+KV K +V E A ELARL+GGI L+I ++
Sbjct: 191 LQIGRRGLFGGVVLNMHMHWKKHETVKVFCKPCKPGQVHEYAQELARLSGGIPLQIIGDD 250
Query: 122 TIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELEL 176
TII YRGKNY QP E+MSP TLS+KKAL+KSKY L +V+++I E+ELEL
Sbjct: 251 TIIFYRGKNYEQP--EVMSPIDTLSKKKALEKSKYEQSLESVRRFIAIAEKELEL 303
>gi|147820521|emb|CAN67658.1| hypothetical protein VITISV_012474 [Vitis vinifera]
Length = 375
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 96/176 (54%), Positives = 123/176 (69%), Gaps = 4/176 (2%)
Query: 2 TAEEKILYKLRKARKKEERIVEGLKKIE-PKESSEMTHDPEILTPEEHFYFLKMGRKCKN 60
AEE+I +KL KAR KE ++E LK+ E PK + P LT EE FY KM +K N
Sbjct: 77 NAEERIKFKLEKARIKEALLIERLKRYEVPKLQGPIVQ-PVNLTGEERFYMKKMAQKRSN 135
Query: 61 YVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEE 120
YVPVGRRG++ GVILNMH+HWKKH+T+KVI K +V E A E+ARL+GG ++I +
Sbjct: 136 YVPVGRRGVFGGVILNMHMHWKKHETVKVICKPCKPGQVHEYANEIARLSGGTPIQIIGD 195
Query: 121 NTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELEL 176
+TII YRGKNY QP E MSP TLS+K+AL+KSKY L +V+++I E+ELEL
Sbjct: 196 DTIIFYRGKNYVQP--EXMSPIDTLSKKRALEKSKYEQSLESVRRFIAIAEKELEL 249
>gi|255585329|ref|XP_002533362.1| conserved hypothetical protein [Ricinus communis]
gi|223526802|gb|EEF29024.1| conserved hypothetical protein [Ricinus communis]
Length = 412
Score = 176 bits (447), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 91/175 (52%), Positives = 122/175 (69%), Gaps = 2/175 (1%)
Query: 2 TAEEKILYKLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKNY 61
AEE+I YKL +A+ KE +VE LK+ E + P LT EE F+ KM +K NY
Sbjct: 103 NAEERIKYKLERAKIKEALLVERLKRYEVPKVQGPEVKPHDLTGEERFFMKKMAQKQSNY 162
Query: 62 VPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEEN 121
VP+GRRG++ GVILNMH+HWKKH+T+KVI +V E A E+ARL+GGI +++ ++
Sbjct: 163 VPLGRRGVFGGVILNMHMHWKKHETVKVICNFCKPGQVHEYAQEIARLSGGIPIQVIGDD 222
Query: 122 TIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELEL 176
TII YRGKNY QP E+MSP TLS+K+AL+KSKY L +V+++I E+ELEL
Sbjct: 223 TIIFYRGKNYVQP--EVMSPIDTLSKKRALEKSKYEQSLESVRRFIAIAEKELEL 275
>gi|449437795|ref|XP_004136676.1| PREDICTED: uncharacterized protein LOC101208777 [Cucumis sativus]
gi|449494725|ref|XP_004159629.1| PREDICTED: uncharacterized LOC101208777 [Cucumis sativus]
Length = 431
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 93/176 (52%), Positives = 122/176 (69%), Gaps = 4/176 (2%)
Query: 2 TAEEKILYKLRKARKKEERIVEGLKKIE-PKESSEMTHDPEILTPEEHFYFLKMGRKCKN 60
A E+I KL AR KE ++E L++ E PK M P LT EE FY KMG+K N
Sbjct: 127 NAAERIKNKLENARIKEALLIERLRRYEVPKVQGPMV-KPHDLTGEERFYIKKMGQKRSN 185
Query: 61 YVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEE 120
YVP+GRRG++ GVILNMH+HWKKH+T+KV K +V E A E+ARL+GGI ++I +
Sbjct: 186 YVPIGRRGVFGGVILNMHMHWKKHETVKVYCKPCKPGQVHEYAQEIARLSGGIPIQIIGD 245
Query: 121 NTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELEL 176
+TII YRGK+Y QP E+MSP TLS+K+AL+KSKY L +V+++I E+ELEL
Sbjct: 246 DTIIFYRGKDYVQP--EVMSPIDTLSKKRALEKSKYEQSLESVRRFIAIAEKELEL 299
>gi|226509977|ref|NP_001151028.1| CFM6 [Zea mays]
gi|195643764|gb|ACG41350.1| CFM6 [Zea mays]
gi|238011754|gb|ACR36912.1| unknown [Zea mays]
Length = 394
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 90/175 (51%), Positives = 123/175 (70%), Gaps = 2/175 (1%)
Query: 2 TAEEKILYKLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKNY 61
T E ++ YK+ KA+ KE R+VE LKK E ++ + L+ EE FY K+ +K NY
Sbjct: 132 TPEARLKYKIEKAKLKEARLVEKLKKYEIAKAQGPMAKVDDLSGEERFYLKKVSQKKSNY 191
Query: 62 VPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEEN 121
VPVGRRG++ GVILNMHLHWKKH+T+KVI K +++E A E+ARL+GGI + + ++
Sbjct: 192 VPVGRRGVFGGVILNMHLHWKKHETVKVICKPCKPGQIQEYANEIARLSGGIPVNVIGDD 251
Query: 122 TIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELEL 176
TI+ YRGK+Y QP E+MSP TLS+KKAL+KSKY L V+++I E+ELEL
Sbjct: 252 TIVFYRGKSYVQP--EVMSPVDTLSKKKALEKSKYEQSLETVRRFIAISEKELEL 304
>gi|57900097|dbj|BAD88159.1| group II intron splicing factor CRS1-like [Oryza sativa Japonica
Group]
gi|57900277|dbj|BAD87110.1| group II intron splicing factor CRS1-like [Oryza sativa Japonica
Group]
gi|215695021|dbj|BAG90212.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 417
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 89/175 (50%), Positives = 120/175 (68%), Gaps = 2/175 (1%)
Query: 2 TAEEKILYKLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKNY 61
T E ++ YK+ KA+ KE +VE LKK E ++ + L EE FY K+ +K NY
Sbjct: 131 TPEARLKYKIEKAKLKEAMLVEKLKKYEIAKAQGPMAKQDDLDGEERFYLKKVSQKKSNY 190
Query: 62 VPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEEN 121
VPVGRRG++ GVILNMHLHWKKH+T+KVI K +++E A+E+ARL+GGI + +
Sbjct: 191 VPVGRRGVFGGVILNMHLHWKKHETVKVICKPCKPGQIQEYASEIARLSGGIPINTIGND 250
Query: 122 TIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELEL 176
TI+ YRGKNY QP ++MSP TLS+KKAL+KSKY L V+++I E+ELEL
Sbjct: 251 TIVFYRGKNYVQP--DVMSPVDTLSKKKALEKSKYEQSLETVRRFIAVSEKELEL 303
>gi|57900098|dbj|BAD88160.1| group II intron splicing factor CRS1-like [Oryza sativa Japonica
Group]
gi|57900278|dbj|BAD87111.1| group II intron splicing factor CRS1-like [Oryza sativa Japonica
Group]
Length = 394
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 89/175 (50%), Positives = 120/175 (68%), Gaps = 2/175 (1%)
Query: 2 TAEEKILYKLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKNY 61
T E ++ YK+ KA+ KE +VE LKK E ++ + L EE FY K+ +K NY
Sbjct: 131 TPEARLKYKIEKAKLKEAMLVEKLKKYEIAKAQGPMAKQDDLDGEERFYLKKVSQKKSNY 190
Query: 62 VPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEEN 121
VPVGRRG++ GVILNMHLHWKKH+T+KVI K +++E A+E+ARL+GGI + +
Sbjct: 191 VPVGRRGVFGGVILNMHLHWKKHETVKVICKPCKPGQIQEYASEIARLSGGIPINTIGND 250
Query: 122 TIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELEL 176
TI+ YRGKNY QP ++MSP TLS+KKAL+KSKY L V+++I E+ELEL
Sbjct: 251 TIVFYRGKNYVQP--DVMSPVDTLSKKKALEKSKYEQSLETVRRFIAVSEKELEL 303
>gi|115442347|ref|NP_001045453.1| Os01g0958400 [Oryza sativa Japonica Group]
gi|57900096|dbj|BAD88158.1| group II intron splicing factor CRS1-like [Oryza sativa Japonica
Group]
gi|57900276|dbj|BAD87109.1| group II intron splicing factor CRS1-like [Oryza sativa Japonica
Group]
gi|113534984|dbj|BAF07367.1| Os01g0958400 [Oryza sativa Japonica Group]
gi|215768161|dbj|BAH00390.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218189771|gb|EEC72198.1| hypothetical protein OsI_05277 [Oryza sativa Indica Group]
gi|222619906|gb|EEE56038.1| hypothetical protein OsJ_04827 [Oryza sativa Japonica Group]
Length = 415
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 89/175 (50%), Positives = 120/175 (68%), Gaps = 2/175 (1%)
Query: 2 TAEEKILYKLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKNY 61
T E ++ YK+ KA+ KE +VE LKK E ++ + L EE FY K+ +K NY
Sbjct: 131 TPEARLKYKIEKAKLKEAMLVEKLKKYEIAKAQGPMAKQDDLDGEERFYLKKVSQKKSNY 190
Query: 62 VPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEEN 121
VPVGRRG++ GVILNMHLHWKKH+T+KVI K +++E A+E+ARL+GGI + +
Sbjct: 191 VPVGRRGVFGGVILNMHLHWKKHETVKVICKPCKPGQIQEYASEIARLSGGIPINTIGND 250
Query: 122 TIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELEL 176
TI+ YRGKNY QP ++MSP TLS+KKAL+KSKY L V+++I E+ELEL
Sbjct: 251 TIVFYRGKNYVQP--DVMSPVDTLSKKKALEKSKYEQSLETVRRFIAVSEKELEL 303
>gi|449438181|ref|XP_004136868.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
chloroplastic-like [Cucumis sativus]
Length = 352
Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 95/190 (50%), Positives = 124/190 (65%), Gaps = 4/190 (2%)
Query: 4 EEKILYKLRKARKKEERIVEGLKKIE-PKESSEMTHDPEILTPEEHFYFLKMGRKCKNYV 62
E +I Y L KA++KE ++E L+K E PK E +DPEILT EE Y + G K KN+V
Sbjct: 159 EVRIRYSLEKAKRKEAWLIEKLRKFEIPKPFVE-KYDPEILTEEEKHYLKRTGEKKKNFV 217
Query: 63 PVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEENT 122
+GRRG++ GV+LNMH+HWKKH+T+KVI K +V E A EL RL+ GIV++I N+
Sbjct: 218 LLGRRGVFGGVVLNMHMHWKKHETVKVICKPCKPGQVHEYAEELTRLSKGIVIDIKPNNS 277
Query: 123 IIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLRAQAE 182
II YRGKNY QP E+MSP TLS+ KAL+K KY L ++I KLE+ELE +
Sbjct: 278 IIFYRGKNYVQP--EVMSPPNTLSKDKALEKYKYEQSLEHTSQFIEKLEKELEDFQKHLA 335
Query: 183 TRSENRSDAA 192
+ DAA
Sbjct: 336 QFKRRKEDAA 345
>gi|449479099|ref|XP_004155504.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
chloroplastic-like [Cucumis sativus]
Length = 290
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 95/190 (50%), Positives = 124/190 (65%), Gaps = 4/190 (2%)
Query: 4 EEKILYKLRKARKKEERIVEGLKKIE-PKESSEMTHDPEILTPEEHFYFLKMGRKCKNYV 62
E +I Y L KA++KE ++E L+K E PK E +DPEILT EE Y + G K KN+V
Sbjct: 97 EVRIRYSLEKAKRKEAWLIEKLRKFEIPKPFVE-KYDPEILTEEEKHYLKRTGEKKKNFV 155
Query: 63 PVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEENT 122
+GRRG++ GV+LNMH+HWKKH+T+KVI K +V E A EL RL+ GIV++I N+
Sbjct: 156 LLGRRGVFGGVVLNMHMHWKKHETVKVICKPCKPGQVHEYAEELTRLSKGIVIDIKPNNS 215
Query: 123 IIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLRAQAE 182
II YRGKNY QP E+MSP TLS+ KAL+K KY L ++I KLE+ELE +
Sbjct: 216 IIFYRGKNYVQP--EVMSPPNTLSKDKALEKYKYEQSLEHTSQFIEKLEKELEDFQKHLA 273
Query: 183 TRSENRSDAA 192
+ DAA
Sbjct: 274 QFKRRKEDAA 283
>gi|15226402|ref|NP_180415.1| RNA-binding CRS1 / YhbY (CRM) domain protein [Arabidopsis thaliana]
gi|4510396|gb|AAD21483.1| hypothetical protein [Arabidopsis thaliana]
gi|44917583|gb|AAS49116.1| At2g28480 [Arabidopsis thaliana]
gi|110741747|dbj|BAE98819.1| hypothetical protein [Arabidopsis thaliana]
gi|330253035|gb|AEC08129.1| RNA-binding CRS1 / YhbY (CRM) domain protein [Arabidopsis thaliana]
Length = 372
Score = 172 bits (435), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 89/176 (50%), Positives = 121/176 (68%), Gaps = 2/176 (1%)
Query: 1 MTAEEKILYKLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKN 60
+ AEE+I YKL KA+ KE ++E LK+ E + P +T EE FY KMG+K N
Sbjct: 122 VNAEERIKYKLEKAKIKEALLIERLKRYEVAKVQGPEVRPHEITGEERFYLKKMGQKRSN 181
Query: 61 YVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEE 120
YVP+GRRG++ GVILNMHLHWKKH+T+KVI +V++ A ELA+L+GG+ + I +
Sbjct: 182 YVPIGRRGVFGGVILNMHLHWKKHETVKVICNNSKPGQVQQYAEELAKLSGGVPVNIIGD 241
Query: 121 NTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELEL 176
+TII YRGK Y QP ++MSP TLS+K+A +KSKY L +V+ +I E+ELEL
Sbjct: 242 DTIIFYRGKGYVQP--QVMSPIDTLSKKRAYEKSKYEQSLESVRHFIAIAEKELEL 295
>gi|357478871|ref|XP_003609721.1| CRM domain-containing protein, putative [Medicago truncatula]
gi|355510776|gb|AES91918.1| CRM domain-containing protein, putative [Medicago truncatula]
Length = 399
Score = 171 bits (433), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 91/173 (52%), Positives = 120/173 (69%), Gaps = 4/173 (2%)
Query: 4 EEKILYKLRKARKKEERIVEGLKKIE-PKESSEMTHDPEILTPEEHFYFLKMGRKCKNYV 62
E +I YKL KA++KE ++E L+K + PK +E T DPEILT EE Y + G K K+YV
Sbjct: 213 EVRIRYKLEKAKRKETWLIEKLRKFDVPKLPTE-TFDPEILTEEERHYLKRTGEKKKHYV 271
Query: 63 PVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEENT 122
PVGRRG++ GV+LNMHLHWK H+T+KVI K + E A ELARL+ GIV++I +
Sbjct: 272 PVGRRGVFGGVVLNMHLHWKNHETVKVICKPCKPGQAHEYAEELARLSKGIVIDIKPNSI 331
Query: 123 IIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELE 175
II YRGKNY QP ++MSP TLS+ KAL+K +Y L ++I +LE+ELE
Sbjct: 332 IIFYRGKNYVQP--KVMSPPDTLSKAKALEKYRYEQSLEHTSQFIERLEKELE 382
>gi|297822421|ref|XP_002879093.1| hypothetical protein ARALYDRAFT_901658 [Arabidopsis lyrata subsp.
lyrata]
gi|297324932|gb|EFH55352.1| hypothetical protein ARALYDRAFT_901658 [Arabidopsis lyrata subsp.
lyrata]
Length = 345
Score = 171 bits (432), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 89/176 (50%), Positives = 120/176 (68%), Gaps = 2/176 (1%)
Query: 1 MTAEEKILYKLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKN 60
+ AEE+I YKL KA+ KE ++E LK+ E + P +T EE FY KMG+K N
Sbjct: 119 VNAEERIKYKLEKAKIKEALLIEKLKRYEVAKVQGPEVRPHEITGEERFYLKKMGQKRSN 178
Query: 61 YVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEE 120
YVP+GRRG++ GVILNMHLHWKKH+T+KVI +V++ A ELA+L+GG+ + I +
Sbjct: 179 YVPIGRRGVFGGVILNMHLHWKKHETVKVICNNSKPGQVQQYAEELAKLSGGVPVNIIGD 238
Query: 121 NTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELEL 176
+TII YRGK Y QP ++MSP TLS+K+A +KSKY L +V+ I E+ELEL
Sbjct: 239 DTIIFYRGKGYVQP--QVMSPIDTLSKKRAYEKSKYEQSLESVRHSIAIAEKELEL 292
>gi|125555042|gb|EAZ00648.1| hypothetical protein OsI_22670 [Oryza sativa Indica Group]
Length = 304
Score = 170 bits (431), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 85/146 (58%), Positives = 105/146 (71%), Gaps = 2/146 (1%)
Query: 4 EEKILYKLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKNYVP 63
E +I YKL KA++KEE ++E L+K E S E HDPEILT EE FY + G K KNYVP
Sbjct: 119 EVRIRYKLEKAKRKEEWLIEKLRKYEVPRSPEPVHDPEILTEEEKFYLKRTGEKKKNYVP 178
Query: 64 VGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEENTI 123
VGRRG++ GV+LNMHLHWKKH+T+KVI K +V E A EL RL+ G V++I NTI
Sbjct: 179 VGRRGVFGGVVLNMHLHWKKHETVKVICKPCRPGQVYEYAEELTRLSKGTVIDIKPNNTI 238
Query: 124 IMYRGKNYAQPPTEIMSPRITLSRKK 149
I YRGKNY QP ++MSP TLS++K
Sbjct: 239 IFYRGKNYVQP--KVMSPPDTLSKQK 262
>gi|356511313|ref|XP_003524371.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
chloroplastic-like [Glycine max]
Length = 282
Score = 170 bits (430), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 95/192 (49%), Positives = 127/192 (66%), Gaps = 2/192 (1%)
Query: 4 EEKILYKLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKNYVP 63
E +I YKL KA++KE ++E L+K + + T+DPEILT EE Y + G + K+YVP
Sbjct: 86 EVRIRYKLEKAKRKETWLIEKLRKFDVPKPPPETYDPEILTEEERHYLKRTGERKKHYVP 145
Query: 64 VGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEENTI 123
VGRRG++ GV+LNMHLHWK H+T+KVI K +V E A ELARL+ GIV++I NTI
Sbjct: 146 VGRRGVFGGVVLNMHLHWKNHETVKVICKPCKPGQVHEYAEELARLSKGIVIDIKPNNTI 205
Query: 124 IMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLRAQAET 183
I YRGKNY +P E+MSP TLS+ KAL+K +Y L ++I KLE+ELE
Sbjct: 206 IFYRGKNYVKP--EVMSPPNTLSKAKALEKYRYEQSLEHTSQFIEKLEKELEEYHQHLAK 263
Query: 184 RSENRSDAAEDV 195
+ + D A+DV
Sbjct: 264 FKKGKEDTAKDV 275
>gi|224095670|ref|XP_002310431.1| predicted protein [Populus trichocarpa]
gi|222853334|gb|EEE90881.1| predicted protein [Populus trichocarpa]
Length = 266
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 90/176 (51%), Positives = 121/176 (68%), Gaps = 3/176 (1%)
Query: 2 TAEEKILYKLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKNY 61
EE+I KL +AR KE ++VE LK+ E + P LT EE F+ KM +K NY
Sbjct: 72 NVEERIKTKLERARIKEAKLVERLKRYEVPKMQGPEVKPHELTGEERFFMKKMAQKKSNY 131
Query: 62 VPVGRRGIYQGVILNMHLHWKKHQTLKVIVK-TFSAEEVKEIAAELARLTGGIVLEIHEE 120
VP+GRRG++ GVILNMH+HWKKH+T+KVI + +V+E A E+ARL+GGI ++I +
Sbjct: 132 VPIGRRGVFGGVILNMHMHWKKHETVKVICNSSCKPGQVQEFAQEIARLSGGIPIQIIGD 191
Query: 121 NTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELEL 176
+T+I YRGKNY QP ++MSP TLS+KKAL+KSKY L V+ +I E+ELEL
Sbjct: 192 DTVIFYRGKNYVQP--KVMSPVDTLSKKKALEKSKYEQSLETVRHFIAIAEKELEL 245
>gi|297790600|ref|XP_002863185.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297309019|gb|EFH39444.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 343
Score = 160 bits (406), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 84/165 (50%), Positives = 116/165 (70%), Gaps = 3/165 (1%)
Query: 4 EEKILYKLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKNYVP 63
E +I YKL KA++KEE ++E L+K + +SS +DPE LT EE Y + G K KN+V
Sbjct: 143 EVRIRYKLEKAKRKEEWLIEKLRKYDVPKSSAEPYDPESLTEEEQHYLKRTGEKRKNFVL 202
Query: 64 VGRRGIYQGVILNMHLHWKKHQTLKVIVKTFS-AEEVKEIAAELARLTGGIVLEIHEENT 122
VGRRG++ GV+LN+HLHWKKH+T+KVI K + +V E A ELARL+ GIV+++ NT
Sbjct: 203 VGRRGVFGGVVLNLHLHWKKHETVKVICKPCNKPGQVHEYAEELARLSKGIVIDVKPNNT 262
Query: 123 IIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYI 167
I++YRGKNY +P E+MSP TLS+ KAL+K +Y L ++I
Sbjct: 263 IVLYRGKNYVRP--EVMSPVDTLSKDKALEKYRYEQSLEHTSEFI 305
>gi|255567361|ref|XP_002524660.1| conserved hypothetical protein [Ricinus communis]
gi|223536021|gb|EEF37679.1| conserved hypothetical protein [Ricinus communis]
Length = 260
Score = 160 bits (405), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 85/165 (51%), Positives = 113/165 (68%), Gaps = 4/165 (2%)
Query: 4 EEKILYKLRKARKKEERIVEGLKKIE-PKESSEMTHDPEILTPEEHFYFLKMGRKCKNYV 62
E +I YKL KA++KE ++E L K E PK +E T DPE+LT EE Y + G K KN++
Sbjct: 67 EVRIRYKLEKAKRKEAWLIEKLSKFEVPKLRAE-TCDPEMLTEEEKHYLKRTGEKKKNFI 125
Query: 63 PVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEENT 122
VGRRG++ GV+LNMHLHWKKH+T+K+I K ++ + A ELARL+ GIV++I N+
Sbjct: 126 LVGRRGVFGGVVLNMHLHWKKHETVKIICKPCKPGQIHQYAEELARLSKGIVIDIRPNNS 185
Query: 123 IIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYI 167
II YRGKNY QP +MSP TLS+ KAL+K KY L ++I
Sbjct: 186 IIFYRGKNYVQP--TVMSPPDTLSKNKALEKYKYEQSLEHTSQFI 228
>gi|5123948|emb|CAB45506.1| putative protein [Arabidopsis thaliana]
gi|7268009|emb|CAB78349.1| putative protein [Arabidopsis thaliana]
Length = 332
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 83/165 (50%), Positives = 115/165 (69%), Gaps = 3/165 (1%)
Query: 4 EEKILYKLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKNYVP 63
E +I YKL KA++KEE ++E L+K + +S +DPE LT EE Y + G K KN+V
Sbjct: 132 EVRIRYKLEKAKRKEEWLIEKLRKYDVPKSPAEPYDPESLTEEEQHYLKRTGEKRKNFVL 191
Query: 64 VGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAE-EVKEIAAELARLTGGIVLEIHEENT 122
VGRRG++ GV+LN+HLHWKKH+T+KVI K + +V E A ELARL+ GIV+++ NT
Sbjct: 192 VGRRGVFGGVVLNLHLHWKKHETVKVICKPCNKPGQVHEYAEELARLSKGIVIDVKPNNT 251
Query: 123 IIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYI 167
I++YRGKNY +P E+MSP TLS+ KAL+K +Y L ++I
Sbjct: 252 IVLYRGKNYVRP--EVMSPVDTLSKDKALEKYRYEQSLEHTSEFI 294
>gi|42566743|ref|NP_193043.2| RNA-binding CRS1 / YhbY (CRM) domain protein [Arabidopsis thaliana]
gi|51968644|dbj|BAD43014.1| putative protein [Arabidopsis thaliana]
gi|51971084|dbj|BAD44234.1| putative protein [Arabidopsis thaliana]
gi|51971893|dbj|BAD44611.1| putative protein [Arabidopsis thaliana]
gi|63003852|gb|AAY25455.1| At4g13070 [Arabidopsis thaliana]
gi|115646846|gb|ABJ17138.1| At4g13070 [Arabidopsis thaliana]
gi|332657826|gb|AEE83226.1| RNA-binding CRS1 / YhbY (CRM) domain protein [Arabidopsis thaliana]
Length = 343
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 83/165 (50%), Positives = 115/165 (69%), Gaps = 3/165 (1%)
Query: 4 EEKILYKLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKNYVP 63
E +I YKL KA++KEE ++E L+K + +S +DPE LT EE Y + G K KN+V
Sbjct: 143 EVRIRYKLEKAKRKEEWLIEKLRKYDVPKSPAEPYDPESLTEEEQHYLKRTGEKRKNFVL 202
Query: 64 VGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAE-EVKEIAAELARLTGGIVLEIHEENT 122
VGRRG++ GV+LN+HLHWKKH+T+KVI K + +V E A ELARL+ GIV+++ NT
Sbjct: 203 VGRRGVFGGVVLNLHLHWKKHETVKVICKPCNKPGQVHEYAEELARLSKGIVIDVKPNNT 262
Query: 123 IIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYI 167
I++YRGKNY +P E+MSP TLS+ KAL+K +Y L ++I
Sbjct: 263 IVLYRGKNYVRP--EVMSPVDTLSKDKALEKYRYEQSLEHTSEFI 305
>gi|168020023|ref|XP_001762543.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686276|gb|EDQ72666.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 548
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 108/296 (36%), Positives = 163/296 (55%), Gaps = 24/296 (8%)
Query: 1 MTAEEKILYKLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKN 60
MT E+ L+++ K +KK E LKK E E DPE+LTPE+ + K+G K KN
Sbjct: 183 MTPEQTFLWRIEKCKKKIALHEEQLKKFELPPLPEPDPDPEVLTPEQLYALKKLGYKNKN 242
Query: 61 YVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEE 120
YVPVGRRGIY G I NMH+HWKKH+T+++ F E++KE+ L RL+GGIV++IH+
Sbjct: 243 YVPVGRRGIYGGTIQNMHMHWKKHETVRIDCDNFPKEKIKEMGETLERLSGGIVIDIHQG 302
Query: 121 NTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLRAQ 180
TIIM+RG+NY +P +I +++KAL KSK+ + ++K I K E++L LRA
Sbjct: 303 TTIIMWRGRNYKRPKVDIPIIFKNFNKRKALIKSKHEQSIGSLKDQIVKWEKDLRELRAD 362
Query: 181 AETRSENRSDAAEDVQNTELDKPDFGSIPSMMECSENDPTTESLMASDSEDLSDIFETDS 240
R+ E +N + P+ P+ + ++D DS++++DI S
Sbjct: 363 MAREEAARARWLE--ENPGMAPPE---PPAPVSVEQSD--------DDSDEVTDI----S 405
Query: 241 ETETEEKAELRPLYLDQFDKFPVQNDEEHEDFEEHLRQISIDSRNAKSLGKDEDSS 296
+ + E +L P Y D +D E+ D + L S+ S + S DS+
Sbjct: 406 DDDITEVDDLGPEYDD-------DSDWEYPDSDVDLPDRSVPSNDNASTSNVSDSN 454
>gi|449450187|ref|XP_004142845.1| PREDICTED: uncharacterized protein LOC101215761 [Cucumis sativus]
Length = 619
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 86/174 (49%), Positives = 122/174 (70%), Gaps = 2/174 (1%)
Query: 1 MTAEEKILYKLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKN 60
MT EE++LY L++A+KK +++ LKK E E HDPE+LTPE+ + K+G + +N
Sbjct: 107 MTEEERLLYNLKRAKKKVALLLQQLKKYELPELPPPRHDPELLTPEQLQAYKKIGFRNRN 166
Query: 61 YVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEE 120
YVPVG RG++ GV+ NMHLHWK H+T++V F E++KE+A LARL+GGIV+ IH+
Sbjct: 167 YVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMLARLSGGIVVNIHDV 226
Query: 121 NTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQEL 174
TIIM+RG+NY QP I P TL+++KAL K+++ L + K I K+EQEL
Sbjct: 227 KTIIMFRGRNYRQPKNLI--PINTLTKRKALFKARFEQALDSQKLNIKKIEQEL 278
>gi|449483922|ref|XP_004156733.1| PREDICTED: uncharacterized protein LOC101226279 [Cucumis sativus]
Length = 619
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 86/174 (49%), Positives = 122/174 (70%), Gaps = 2/174 (1%)
Query: 1 MTAEEKILYKLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKN 60
MT EE++LY L++A+KK +++ LKK E E HDPE+LTPE+ + K+G + +N
Sbjct: 107 MTEEERLLYNLKRAKKKVALLLQQLKKYELPELPPPRHDPELLTPEQLQAYKKIGFRNRN 166
Query: 61 YVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEE 120
YVPVG RG++ GV+ NMHLHWK H+T++V F E++KE+A LARL+GGIV+ IH+
Sbjct: 167 YVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMLARLSGGIVVNIHDV 226
Query: 121 NTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQEL 174
TIIM+RG+NY QP I P TL+++KAL K+++ L + K I K+EQEL
Sbjct: 227 KTIIMFRGRNYRQPKNLI--PINTLTKRKALFKARFEQALDSQKLNIKKIEQEL 278
>gi|356513969|ref|XP_003525680.1| PREDICTED: uncharacterized protein LOC100780131 [Glycine max]
Length = 653
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 85/182 (46%), Positives = 124/182 (68%), Gaps = 2/182 (1%)
Query: 1 MTAEEKILYKLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKN 60
MT EE+++Y L++A+KK +++ LKK E E HDPE+LTPE+ + K+G + KN
Sbjct: 109 MTEEERLIYNLKRAKKKVALLLQKLKKYELPELPPPRHDPELLTPEQLQAYKKIGFRNKN 168
Query: 61 YVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEE 120
YVPVG RG++ GV+ NMHLHWK H+T++V F E++KE+A+ LARL+GGIV+ +H
Sbjct: 169 YVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMASMLARLSGGIVINVHNV 228
Query: 121 NTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLRAQ 180
TIIM+RG+NY QP I P TL+++KAL K+++ L + K I K+EQ+L +
Sbjct: 229 KTIIMFRGRNYRQPKNLI--PINTLTKRKALFKARFEQALESQKLNIKKIEQQLRRMGVN 286
Query: 181 AE 182
E
Sbjct: 287 PE 288
>gi|356573355|ref|XP_003554827.1| PREDICTED: uncharacterized protein LOC100782246 [Glycine max]
Length = 653
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 85/182 (46%), Positives = 124/182 (68%), Gaps = 2/182 (1%)
Query: 1 MTAEEKILYKLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKN 60
MT EE+++Y L++A+KK +++ LKK E E HDPE+LTPE+ + K+G + KN
Sbjct: 109 MTEEERLIYNLKRAKKKVALLLQKLKKYELPELPHPRHDPELLTPEQLQAYKKIGFRNKN 168
Query: 61 YVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEE 120
YVPVG RG++ GV+ NMHLHWK H+T++V F E++KE+A+ LARL+GGIV+ +H
Sbjct: 169 YVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMASMLARLSGGIVINVHNV 228
Query: 121 NTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLRAQ 180
TIIM+RG+NY QP I P TL+++KAL K+++ L + K I K+EQ+L +
Sbjct: 229 KTIIMFRGRNYRQPKNLI--PINTLTKRKALFKARFEQALESQKLNIKKIEQQLRRMGVN 286
Query: 181 AE 182
E
Sbjct: 287 PE 288
>gi|359488800|ref|XP_002272412.2| PREDICTED: uncharacterized protein LOC100254349 [Vitis vinifera]
Length = 666
Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 85/182 (46%), Positives = 123/182 (67%), Gaps = 2/182 (1%)
Query: 1 MTAEEKILYKLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKN 60
MT EE+++Y LR+A+KK +++ LKK E E HDPE+LT E+ + K+G + KN
Sbjct: 92 MTDEERLIYNLRRAKKKVALLLQKLKKYELPELPAPRHDPELLTAEQLQAYKKIGFRNKN 151
Query: 61 YVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEE 120
YVPVG RG++ GV+ NMHLHWK H+T++V F E++KE+A LARL+GGIV+ +H+
Sbjct: 152 YVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMLARLSGGIVINVHDV 211
Query: 121 NTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLRAQ 180
TIIM+RG+NY QP I P TL+++KAL K+++ L + K I K+EQ+L +
Sbjct: 212 KTIIMFRGRNYRQPKNLI--PINTLTKRKALFKARFEQALDSQKLNIKKIEQQLRRMGVN 269
Query: 181 AE 182
E
Sbjct: 270 PE 271
>gi|357521229|ref|XP_003630903.1| CRM domain-containing protein, putative [Medicago truncatula]
gi|355524925|gb|AET05379.1| CRM domain-containing protein, putative [Medicago truncatula]
Length = 318
Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 77/148 (52%), Positives = 100/148 (67%), Gaps = 4/148 (2%)
Query: 4 EEKILYKLRKARKKEERIVEGLKKIE-PKESSEMTHDPEILTPEEHFYFLKMGRKCKNYV 62
E +I YKL KA++KE ++E L+K + PK +E T DPEILT EE Y + G K K+YV
Sbjct: 148 EVRIRYKLEKAKRKETWLIEKLRKFDVPKLPTE-TFDPEILTEEERHYLKRTGEKKKHYV 206
Query: 63 PVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEENT 122
PVGRRG++ V+LNMHLHWKKH+T+KVI K + E EL R + GIV++I N
Sbjct: 207 PVGRRGVFGEVVLNMHLHWKKHETVKVICKPCKPGQAHEYTEELTRPSKGIVIDIKPNNI 266
Query: 123 IIMYRGKNYAQPPTEIMSPRITLSRKKA 150
II YRG+NY QP ++MSP TLS+ K
Sbjct: 267 IIFYRGRNYVQP--KVMSPPDTLSKAKV 292
>gi|297818350|ref|XP_002877058.1| hypothetical protein ARALYDRAFT_484545 [Arabidopsis lyrata subsp.
lyrata]
gi|297322896|gb|EFH53317.1| hypothetical protein ARALYDRAFT_484545 [Arabidopsis lyrata subsp.
lyrata]
Length = 488
Score = 140 bits (353), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 82/182 (45%), Positives = 121/182 (66%), Gaps = 2/182 (1%)
Query: 1 MTAEEKILYKLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKN 60
MT EE+++Y L++A+KK +++ LKK + E HDPE+ T E+ F K+G K KN
Sbjct: 50 MTDEERLIYNLKRAKKKVALLLQKLKKYDLPELPSPVHDPELFTSEQVQAFKKIGFKNKN 109
Query: 61 YVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEE 120
YVPVG RG++ GV+ NMH+HWK H+T++V F E++KE+A+ +ARL+GG+V+ IH
Sbjct: 110 YVPVGVRGVFGGVVQNMHMHWKFHETVQVCCDNFPKEKIKEMASMIARLSGGVVINIHNV 169
Query: 121 NTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLRAQ 180
TIIM+RG+NY QP I P TL+++KAL K+++ L + K I K EQ+L +
Sbjct: 170 KTIIMFRGRNYRQPKNLI--PVNTLTKRKALFKARFEQALESQKLNIKKTEQQLRRMGVN 227
Query: 181 AE 182
E
Sbjct: 228 PE 229
>gi|15232195|ref|NP_189392.1| RNA-binding CRS1 / YhbY (CRM) domain protein [Arabidopsis thaliana]
gi|11994182|dbj|BAB01285.1| unnamed protein product [Arabidopsis thaliana]
gi|332643815|gb|AEE77336.1| RNA-binding CRS1 / YhbY (CRM) domain protein [Arabidopsis thaliana]
Length = 491
Score = 140 bits (352), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 82/182 (45%), Positives = 121/182 (66%), Gaps = 2/182 (1%)
Query: 1 MTAEEKILYKLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKN 60
MT EE+++Y L++A+KK +++ LKK + E HDPE+ T E+ F K+G K KN
Sbjct: 50 MTDEERLIYNLKRAKKKVALLLQKLKKYDLPELPSPVHDPELFTSEQVQAFKKIGFKNKN 109
Query: 61 YVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEE 120
YVPVG RG++ GV+ NMH+HWK H+T++V F E++KE+A+ +ARL+GG+V+ IH
Sbjct: 110 YVPVGVRGVFGGVVQNMHMHWKFHETVQVCCDNFPKEKIKEMASMIARLSGGVVINIHNV 169
Query: 121 NTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLRAQ 180
TIIM+RG+NY QP I P TL+++KAL K+++ L + K I K EQ+L +
Sbjct: 170 KTIIMFRGRNYRQPKNLI--PVNTLTKRKALFKARFEQALESQKLNIKKTEQQLRRMGVN 227
Query: 181 AE 182
E
Sbjct: 228 PE 229
>gi|255560940|ref|XP_002521483.1| conserved hypothetical protein [Ricinus communis]
gi|223539382|gb|EEF40973.1| conserved hypothetical protein [Ricinus communis]
Length = 745
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 83/182 (45%), Positives = 121/182 (66%), Gaps = 2/182 (1%)
Query: 1 MTAEEKILYKLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKN 60
MT EE+++Y L++A+KK +++ LKK E E HDPE+ T E+ + K+G + +N
Sbjct: 110 MTDEERLIYNLKRAKKKVALLLQKLKKYELPELPPPLHDPELFTSEQLQAYKKIGFRNRN 169
Query: 61 YVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEE 120
YVPVG RG++ GV+ NMHLHWK H+T++V F E++KE+A LARL+GGIV+ IH
Sbjct: 170 YVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMLARLSGGIVINIHNV 229
Query: 121 NTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLRAQ 180
TIIM+RG+NY QP I P TL+++KAL K+++ L + K I K+EQ+L +
Sbjct: 230 KTIIMFRGRNYRQPKNLI--PINTLTKRKALFKARFEQALESQKLNIKKIEQQLRRMGVN 287
Query: 181 AE 182
E
Sbjct: 288 PE 289
>gi|224055583|ref|XP_002298551.1| predicted protein [Populus trichocarpa]
gi|222845809|gb|EEE83356.1| predicted protein [Populus trichocarpa]
Length = 496
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 81/182 (44%), Positives = 123/182 (67%), Gaps = 2/182 (1%)
Query: 1 MTAEEKILYKLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKN 60
MT EE+++Y L++A+KK +++ LKK + E HDPE+LTPE+ + K+G + KN
Sbjct: 39 MTDEERLIYNLKRAKKKVALLLQKLKKYDLPELPSPLHDPELLTPEQLQAYKKIGFRNKN 98
Query: 61 YVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEE 120
YVPVG RG++ GV+ NMH+HWK H+T++V F E++KE+A +ARL+GGIV+ +H
Sbjct: 99 YVPVGVRGVFGGVVQNMHMHWKFHETVQVSCDNFPKEKIKEMATMIARLSGGIVVNVHNV 158
Query: 121 NTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLRAQ 180
TIIM+RG+NY QP I P TL+++KAL K+++ L + K I ++EQ+L +
Sbjct: 159 KTIIMFRGRNYRQPKDLI--PLNTLTKRKALFKARFEQALESQKLNIKQIEQQLRRMGVN 216
Query: 181 AE 182
E
Sbjct: 217 PE 218
>gi|413950005|gb|AFW82654.1| hypothetical protein ZEAMMB73_283519 [Zea mays]
Length = 645
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 81/174 (46%), Positives = 119/174 (68%), Gaps = 2/174 (1%)
Query: 1 MTAEEKILYKLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKN 60
MT +EK++Y LR+A+KK +++ LKK E + HDPE+LT E+ + K+G + +N
Sbjct: 91 MTEDEKLIYNLRRAKKKVALLLQKLKKYELPDLPAPRHDPELLTAEQLQAYKKIGFRNRN 150
Query: 61 YVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEE 120
YVPVG RG++ GV+ NMH+HWK H+T++V F E++KE+AA L RL+GGIV+ IH
Sbjct: 151 YVPVGVRGVFGGVVQNMHMHWKFHETVQVCCDNFPKEKIKEMAAMLTRLSGGIVINIHNT 210
Query: 121 NTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQEL 174
TIIM+RG+NY QP I P TL+++KAL K+++ L + K I K+E +L
Sbjct: 211 KTIIMFRGRNYRQPKNLI--PFNTLTKRKALFKARFEQALESQKLNIKKIETQL 262
>gi|242086871|ref|XP_002439268.1| hypothetical protein SORBIDRAFT_09g003490 [Sorghum bicolor]
gi|241944553|gb|EES17698.1| hypothetical protein SORBIDRAFT_09g003490 [Sorghum bicolor]
Length = 652
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 81/174 (46%), Positives = 119/174 (68%), Gaps = 2/174 (1%)
Query: 1 MTAEEKILYKLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKN 60
MT +EK++Y LR+A+KK +++ LKK E + HDPE+LT E+ + K+G + +N
Sbjct: 92 MTEDEKLIYNLRRAKKKVALLLQKLKKYELPDLPAPRHDPELLTAEQLQAYKKIGFRNRN 151
Query: 61 YVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEE 120
YVPVG RG++ GV+ NMH+HWK H+T++V F E++KE+AA L RL+GGIV+ IH
Sbjct: 152 YVPVGVRGVFGGVVQNMHMHWKFHETVQVCCDNFPKEKIKEMAAMLTRLSGGIVINIHNT 211
Query: 121 NTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQEL 174
TIIM+RG+NY QP I P TL+++KAL K+++ L + K I K+E +L
Sbjct: 212 KTIIMFRGRNYRQPKNLI--PFNTLTKRKALFKARFEQALESQKLNIKKIETQL 263
>gi|413917671|gb|AFW57603.1| hypothetical protein ZEAMMB73_144408 [Zea mays]
Length = 520
Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 81/174 (46%), Positives = 118/174 (67%), Gaps = 2/174 (1%)
Query: 1 MTAEEKILYKLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKN 60
MT +EK +Y LR+A+KK +++ LKK E + HDPE+LT E+ + K+G + +N
Sbjct: 94 MTEDEKFIYNLRRAKKKVALLLQKLKKYELPDLQAPRHDPELLTAEQLQAYKKIGFRNRN 153
Query: 61 YVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEE 120
YVPVG RG++ GV+ NMH+HWK H+T++V F E++KE+AA L RL+GGIV+ IH
Sbjct: 154 YVPVGVRGVFGGVVQNMHMHWKFHETVQVCCDNFPKEKIKEMAAMLTRLSGGIVINIHNT 213
Query: 121 NTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQEL 174
TIIM+RG+NY QP I P TL+++KAL K+++ L + K I K+E +L
Sbjct: 214 KTIIMFRGRNYRQPKNLI--PFNTLTKRKALFKARFEQALESQKLNIKKIETQL 265
>gi|51038196|gb|AAT93999.1| unknow protein [Oryza sativa Japonica Group]
gi|222630175|gb|EEE62307.1| hypothetical protein OsJ_17096 [Oryza sativa Japonica Group]
Length = 560
Score = 137 bits (344), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 80/174 (45%), Positives = 119/174 (68%), Gaps = 2/174 (1%)
Query: 1 MTAEEKILYKLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKN 60
MT +E+++Y LR+A+KK +++ LKK E + HDPE+LT E+ + K+G + +N
Sbjct: 102 MTDDERLIYSLRRAKKKVALLLQKLKKYELPDLPAPRHDPELLTAEQLQAYKKIGFRNRN 161
Query: 61 YVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEE 120
YVPVG RG++ GV+ NMH+HWK H+T++V F E++KE+AA L RL+GGIV+ IH
Sbjct: 162 YVPVGVRGVFGGVVQNMHMHWKFHETVQVCCDNFPKEKIKEMAAMLTRLSGGIVINIHNT 221
Query: 121 NTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQEL 174
TIIM+RG+NY QP I P TL+++KAL K+++ L + K I K+E +L
Sbjct: 222 KTIIMFRGRNYRQPKNLI--PLNTLTKRKALFKARFEQALESQKLNIKKIETQL 273
>gi|296087592|emb|CBI34848.3| unnamed protein product [Vitis vinifera]
Length = 545
Score = 137 bits (344), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 84/190 (44%), Positives = 122/190 (64%), Gaps = 8/190 (4%)
Query: 1 MTAEEKILYKLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKN 60
MT EE+++Y LR+A+KK +++ LKK E E HDPE+LT E+ + K+G + KN
Sbjct: 107 MTDEERLIYNLRRAKKKVALLLQKLKKYELPELPAPRHDPELLTAEQLQAYKKIGFRNKN 166
Query: 61 YVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEE 120
YVPVG RG++ GV+ NMHLHWK H+T++V F E++KE+A LARL+GGIV+ +H+
Sbjct: 167 YVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMLARLSGGIVINVHDV 226
Query: 121 NTIIMYRGKNYAQP----PTEIMSPRITLSRKK----ALDKSKYRDGLRAVKKYIPKLEQ 172
TIIM+RG+NY QP P ++ R + KK AL K+++ L + K I K+EQ
Sbjct: 227 KTIIMFRGRNYRQPKNLIPINTLTKRKATATKKAKEAALFKARFEQALDSQKLNIKKIEQ 286
Query: 173 ELELLRAQAE 182
+L + E
Sbjct: 287 QLRRMGVNPE 296
>gi|125550822|gb|EAY96531.1| hypothetical protein OsI_18436 [Oryza sativa Indica Group]
Length = 560
Score = 137 bits (344), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 80/174 (45%), Positives = 119/174 (68%), Gaps = 2/174 (1%)
Query: 1 MTAEEKILYKLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKN 60
MT +E+++Y LR+A+KK +++ LKK E + HDPE+LT E+ + K+G + +N
Sbjct: 102 MTDDERLIYSLRRAKKKVALLLQKLKKYELPDLPAPRHDPELLTAEQLQAYKKIGFRNRN 161
Query: 61 YVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEE 120
YVPVG RG++ GV+ NMH+HWK H+T++V F E++KE+AA L RL+GGIV+ IH
Sbjct: 162 YVPVGVRGVFGGVVQNMHMHWKFHETVQVCCDNFPKEKIKEMAAMLTRLSGGIVINIHNT 221
Query: 121 NTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQEL 174
TIIM+RG+NY QP I P TL+++KAL K+++ L + K I K+E +L
Sbjct: 222 KTIIMFRGRNYRQPKNLI--PLNTLTKRKALFKARFEQALESQKLNIKKIETQL 273
>gi|357134703|ref|XP_003568955.1| PREDICTED: uncharacterized protein LOC100832553 [Brachypodium
distachyon]
Length = 562
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 79/174 (45%), Positives = 119/174 (68%), Gaps = 2/174 (1%)
Query: 1 MTAEEKILYKLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKN 60
MT +E++++ +R+A+KK +++ LKK E + HDPE+LT E+ + K+G + +N
Sbjct: 106 MTDDERLIHSMRRAKKKVALLLQKLKKYELPDLPAPRHDPELLTAEQLQAYKKIGFRNRN 165
Query: 61 YVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEE 120
YVPVG RG++ GV+ NMH+HWK H+T++V F E++KE+AA L RL+GGIV+ IH
Sbjct: 166 YVPVGVRGVFGGVVQNMHMHWKFHETVQVCCDNFPKEKIKEMAAMLTRLSGGIVVNIHNT 225
Query: 121 NTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQEL 174
TIIM+RG+NY QP I P TL+++KAL K++Y L + K I K+E +L
Sbjct: 226 KTIIMFRGRNYRQPKNLI--PFNTLTKRKALFKARYEQALESQKLNIKKIETQL 277
>gi|449529423|ref|XP_004171699.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like, partial [Cucumis sativus]
Length = 789
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 66/176 (37%), Positives = 107/176 (60%), Gaps = 7/176 (3%)
Query: 16 KKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVIL 75
K E+I+ L+ E KE S++ D E +T EE F K+G K Y+ +GRRG+Y G +
Sbjct: 613 KNAEKIIAKLQ--EKKEPSDLPTDLETITDEERLLFRKIGLSMKPYLLLGRRGVYDGTVE 670
Query: 76 NMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEENT---IIMYRGKNYA 132
NMHLHWK + +K+IV+ + ++VK +A L + G+V+ + + +I+YRGKNY
Sbjct: 671 NMHLHWKFRELVKIIVRGKTLQQVKHVAISLEAESNGVVISLDKTTKGYEVIVYRGKNYT 730
Query: 133 QPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLRAQAETRSENR 188
+P + M P+ L+R++AL +S A+K +I LE+++ELL+A+ E R +
Sbjct: 731 RP--DAMRPKNMLTRRQALARSIELQRREALKHHILDLEEKIELLKAELEERKSGK 784
Score = 42.0 bits (97), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Query: 51 FLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKE-IAAELARL 109
F ++ RK + +GR QG+ M W+K K+ +K E +A EL L
Sbjct: 433 FRRLARKMPPHFALGRNRQLQGLANAMVKLWEKCAIAKIAIKRGVENTRNERMAEELRIL 492
Query: 110 TGGIVLEIHEENTIIMYRGKNYAQPPT 136
TGG +L ++E I+ YRG +Y PPT
Sbjct: 493 TGGTLLSRNKE-YIVFYRGNDYL-PPT 517
>gi|449452735|ref|XP_004144114.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Cucumis sativus]
Length = 846
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 66/176 (37%), Positives = 107/176 (60%), Gaps = 7/176 (3%)
Query: 16 KKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVIL 75
K E+I+ L+ E KE S++ D E +T EE F K+G K Y+ +GRRG+Y G +
Sbjct: 670 KNAEKIIAKLQ--EKKEPSDLPTDLETITDEERLLFRKIGLSMKPYLLLGRRGVYDGTVE 727
Query: 76 NMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEENT---IIMYRGKNYA 132
NMHLHWK + +K+IV+ + ++VK +A L + G+V+ + + +I+YRGKNY
Sbjct: 728 NMHLHWKFRELVKIIVRGKTLQQVKHVAISLEAESNGVVISLDKTTKGYEVIVYRGKNYT 787
Query: 133 QPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLRAQAETRSENR 188
+P + M P+ L+R++AL +S A+K +I LE+++ELL+A+ E R +
Sbjct: 788 RP--DAMRPKNMLTRRQALARSIELQRREALKHHILDLEEKIELLKAELEERKSGK 841
Score = 42.0 bits (97), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Query: 51 FLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKE-IAAELARL 109
F ++ RK + +GR QG+ M W+K K+ +K E +A EL L
Sbjct: 490 FRRLARKMPPHFALGRNRQLQGLANAMVKLWEKCAIAKIAIKRGVENTRNERMAEELRIL 549
Query: 110 TGGIVLEIHEENTIIMYRGKNYAQPPT 136
TGG +L ++E I+ YRG +Y PPT
Sbjct: 550 TGGTLLSRNKE-YIVFYRGNDYL-PPT 574
>gi|162459980|ref|NP_001106061.1| CRM family member 3 [Zea mays]
gi|156789080|gb|ABU96081.1| CRM family member 3 [Zea mays]
Length = 842
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 67/179 (37%), Positives = 111/179 (62%), Gaps = 6/179 (3%)
Query: 6 KILYKLRKARKKEERIVEGLKKIEPK-ESSEMTHDPEILTPEEHFYFLKMGRKCKNYVPV 64
K+ +KL A+KK E+ L K+E +E + PE +T EE F F K+G + K ++ +
Sbjct: 546 KLEWKLSLAQKKMEKAERVLGKVETALRPTEDSRPPETITDEERFMFRKLGLRMKAFLLL 605
Query: 65 GRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEEN--- 121
GRRG++ G I NMHLHWK + +K++VK S +VK IA L +GGI++ + + +
Sbjct: 606 GRRGVFDGTIENMHLHWKYRELVKILVKAKSFADVKRIALSLEAESGGILVSVDKVSKGY 665
Query: 122 TIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLRAQ 180
I+++RGKNY +P + + PR LS++KAL +S +A+ ++ KL +++E L+A+
Sbjct: 666 AIVVFRGKNYRRPSS--LRPRNLLSKRKALARSIELQRHQALSRHFAKLNRKVERLKAE 722
>gi|334187011|ref|NP_194704.2| CRS1 / YhbY (CRM) domain-containing protein [Arabidopsis thaliana]
gi|332660271|gb|AEE85671.1| CRS1 / YhbY (CRM) domain-containing protein [Arabidopsis thaliana]
Length = 841
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 75/209 (35%), Positives = 117/209 (55%), Gaps = 10/209 (4%)
Query: 4 EEKILYKLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKNYVP 63
E ++LY +K R+ E + + K ++P SE+ D EI+T EE + K+G ++
Sbjct: 611 ELRLLYGKQKLRRAERDLAKVQKDLDP---SELPTDSEIITEEERLLYRKIGLSMDPFLL 667
Query: 64 VGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEE--- 120
+GRR +Y G I NMHLHWK + +KVIV+ S +VK IA L +GG+++ + +
Sbjct: 668 LGRREVYDGTIENMHLHWKHRELVKVIVRGKSLPQVKHIAISLEAESGGVLVSVDKTMKG 727
Query: 121 NTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLRAQ 180
II+YRGKNY P + P L+RKKA +S A+K ++ LE+ +ELL+
Sbjct: 728 YAIILYRGKNYQMPFR--LRPSNLLTRKKAFARSIELQRREALKYHVADLEERIELLKTG 785
Query: 181 AETRSENRSDAAEDVQNTEL--DKPDFGS 207
+ E R+ + E+ +N L D+ DF S
Sbjct: 786 QDDDMETRNKSDEEEENLYLRVDESDFSS 814
>gi|224111046|ref|XP_002315729.1| predicted protein [Populus trichocarpa]
gi|222864769|gb|EEF01900.1| predicted protein [Populus trichocarpa]
Length = 894
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 68/184 (36%), Positives = 113/184 (61%), Gaps = 12/184 (6%)
Query: 4 EEKILYKLRKARKKEERI--VEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKNY 61
E+K+ + RK R+ E + VEG K SE DPE +T EE F F K+G + K +
Sbjct: 598 EKKLAFAQRKLRRAERTLNKVEGFLK-----PSERQADPESITDEERFMFRKLGLRMKAF 652
Query: 62 VPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVL---EIH 118
+ +GRRG++ G + NMHLHWK + +K+I+K S E+VK+IA L +GG+++ +I
Sbjct: 653 LLLGRRGVFDGTVENMHLHWKYRELVKIILKAKSFEQVKKIALALEAESGGVLVSVDKIS 712
Query: 119 EENTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLR 178
+ II+YRGK+Y +P ++ P+ L+++KAL +S A++ ++ LE ++E +R
Sbjct: 713 KGYAIIVYRGKDYQRP--SMLRPKNLLTKRKALARSIEIQRSEALQNHVSALEIKVEKIR 770
Query: 179 AQAE 182
++ E
Sbjct: 771 SEIE 774
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Query: 52 LKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTG 111
L G K K V G RG+ Q V+ +H WK + +V V+ A +K + L TG
Sbjct: 223 LTYGTKSKTRV--GGRGVTQEVVDAIHDKWKTSEIARVKVEGAPALNMKRMHEILENKTG 280
Query: 112 GIVLEIHEENTIIMYRGKNYAQP 134
G+V+ T+ +YRG +Y P
Sbjct: 281 GLVI-WRSGATVSLYRGVSYEDP 302
Score = 42.4 bits (98), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Query: 53 KMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKE-IAAELARLTG 111
++ R + VGR QG+ + M W+K +KV +K E +A ++ +LTG
Sbjct: 431 RLARVLPPHFAVGRSRQLQGLAVAMIKLWEKSSIVKVALKRGVQLTTSERMAEDIKKLTG 490
Query: 112 GIVLEIHEENTIIMYRGKNYAQP 134
G++L ++ ++ YRGK++ P
Sbjct: 491 GLLLS-RNKDFLVFYRGKDFLSP 512
>gi|5123569|emb|CAB45335.1| putative protein [Arabidopsis thaliana]
gi|7269874|emb|CAB79733.1| putative protein [Arabidopsis thaliana]
Length = 776
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 75/209 (35%), Positives = 117/209 (55%), Gaps = 10/209 (4%)
Query: 4 EEKILYKLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKNYVP 63
E ++LY +K R+ E + + K ++P SE+ D EI+T EE + K+G ++
Sbjct: 569 ELRLLYGKQKLRRAERDLAKVQKDLDP---SELPTDSEIITEEERLLYRKIGLSMDPFLL 625
Query: 64 VGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEE--- 120
+GRR +Y G I NMHLHWK + +KVIV+ S +VK IA L +GG+++ + +
Sbjct: 626 LGRREVYDGTIENMHLHWKHRELVKVIVRGKSLPQVKHIAISLEAESGGVLVSVDKTMKG 685
Query: 121 NTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLRAQ 180
II+YRGKNY P + P L+RKKA +S A+K ++ LE+ +ELL+
Sbjct: 686 YAIILYRGKNYQMPFR--LRPSNLLTRKKAFARSIELQRREALKYHVADLEERIELLKTG 743
Query: 181 AETRSENRSDAAEDVQNTEL--DKPDFGS 207
+ E R+ + E+ +N L D+ DF S
Sbjct: 744 QDDDMETRNKSDEEEENLYLRVDESDFSS 772
>gi|414591664|tpg|DAA42235.1| TPA: CRM family member 3 [Zea mays]
Length = 1523
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 67/179 (37%), Positives = 111/179 (62%), Gaps = 6/179 (3%)
Query: 6 KILYKLRKARKKEERIVEGLKKIEPK-ESSEMTHDPEILTPEEHFYFLKMGRKCKNYVPV 64
K+ +KL A+KK E+ L K+E +E + PE +T EE F F K+G + K ++ +
Sbjct: 1227 KLEWKLSLAQKKMEKAERVLGKVETALRPTEDSRPPETITDEERFMFRKLGLRMKAFLLL 1286
Query: 65 GRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEEN--- 121
GRRG++ G I NMHLHWK + +K++VK S +VK IA L +GGI++ + + +
Sbjct: 1287 GRRGVFDGTIENMHLHWKYRELVKILVKAKSFADVKRIALSLEAESGGILVSVDKVSKGY 1346
Query: 122 TIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLRAQ 180
I+++RGKNY +P + + PR LS++KAL +S +A+ ++ KL +++E L+A+
Sbjct: 1347 AIVVFRGKNYRRPSS--LRPRNLLSKRKALARSIELQRHQALSRHFAKLNRKVERLKAE 1403
>gi|356576487|ref|XP_003556362.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Glycine max]
Length = 835
Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 78/242 (32%), Positives = 140/242 (57%), Gaps = 21/242 (8%)
Query: 4 EEKILYKLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKNYVP 63
E+K+ + RK R+ E+ +++ ++P SE DPE +T EE F F K+G + K ++
Sbjct: 594 EQKLSFAERKLRRAEKALMKVESFLKP---SEYKADPESITDEERFMFRKLGLRMKAFLL 650
Query: 64 VGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEEN-- 121
+GRRG++ G I NMHLHWK + +K+IVK + E+VK+IA L +GG+++ + + +
Sbjct: 651 LGRRGVFDGTIENMHLHWKYRELVKIIVKAKTFEQVKKIALALEAESGGVLVSVDKVSKG 710
Query: 122 -TIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLRAQ 180
++I+YRGK+Y +P T + P+ L+++KAL +S A+ +I L+ ++ +R++
Sbjct: 711 YSVIVYRGKDYQRPST--LRPKNLLTKRKALARSIELQRHEALMNHISTLQSKVGRIRSE 768
Query: 181 AET--RSENRSDAA----------EDVQNTELDKPDFGSIPSMMEC-SENDPTTESLMAS 227
E + +++ D A D +N+E++ + G + SEND ES + S
Sbjct: 769 IEQMEKVKDKGDEALYDKLDSAYPSDDENSEVEDGEQGDEAYLKTYNSENDSEIESEVES 828
Query: 228 DS 229
D+
Sbjct: 829 DN 830
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 62/121 (51%), Gaps = 2/121 (1%)
Query: 18 EERIVEGLKKIEPKESSEMTHDPEILTPEEHF-YFLKMGRKCKNYVPVGRRGIYQGVILN 76
E+ +VE L++ + S T E+ PE LK+ + K+ +GR G+ Q V+
Sbjct: 185 EKPVVEELEERKSMRSRSKTSLAELTLPESELKRLLKLTFEKKHKTRIGRSGVTQAVVDK 244
Query: 77 MHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEENTIIMYRGKNYAQPPT 136
+H WK + +++ + +A +K + L R TGG+V+ N++ +YRG +Y P
Sbjct: 245 IHERWKTSEIVRLKFEGEAALNMKRMHEILERKTGGLVI-WRSGNSVSLYRGVSYEVPSV 303
Query: 137 E 137
+
Sbjct: 304 Q 304
>gi|357441009|ref|XP_003590782.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago
truncatula]
gi|355479830|gb|AES61033.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago
truncatula]
Length = 838
Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 68/197 (34%), Positives = 118/197 (59%), Gaps = 8/197 (4%)
Query: 4 EEKILYKLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKNYVP 63
EEK+ RK R+ E +++ ++P SE DPE +T EE F F K+G + K ++
Sbjct: 594 EEKLSLAERKIRRAERALMKVEVSLKP---SETRADPESITDEERFMFRKLGLRMKAFLL 650
Query: 64 VGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEEN-- 121
+GRRG++ G I NMHLHWK + +K+IVK + E VK+IA L +GG+++ + + +
Sbjct: 651 LGRRGVFDGTIENMHLHWKYRELVKIIVKANNFEHVKKIALALEAESGGVLVSVDKVSKG 710
Query: 122 -TIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLRAQ 180
+I++YRGK+Y +P ++ P+ L+++KAL +S A+ +I L+ ++E LR++
Sbjct: 711 YSILVYRGKDYQRP--SMLRPKNLLTKRKALARSIELQRHEALSSHISTLQSKVEKLRSE 768
Query: 181 AETRSENRSDAAEDVQN 197
E + + + E + N
Sbjct: 769 IEQIEKVKEEGDEALYN 785
Score = 44.3 bits (103), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Query: 53 KMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKE-IAAELARLTG 111
++ R + +GR QG+ M W+K KV +K E +A E+ +LTG
Sbjct: 427 RIARGLPPHFALGRNRQLQGLAAAMIKLWEKSSIAKVALKRGVQLTTSERMAEEIKKLTG 486
Query: 112 GIVLEIHEENTIIMYRGKNYAQP 134
GI+L ++ ++ YRGKN+ P
Sbjct: 487 GIILS-RNKDFLVFYRGKNFLSP 508
Score = 40.4 bits (93), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 48/99 (48%), Gaps = 2/99 (2%)
Query: 37 THDPEILTPEEHFY-FLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFS 95
T E+ PE LK+ K+ +G G+ Q + +H WK + +++ + +
Sbjct: 204 TSMAELTLPESELRRLLKLTFMKKHKTRIGGGGVTQAAVDKIHERWKTSEIVRLKFEGDA 263
Query: 96 AEEVKEIAAELARLTGGIVLEIHEENTIIMYRGKNYAQP 134
A +K + L + TGG+V+ N++ +YRG +Y P
Sbjct: 264 ALNMKRMHEILEKKTGGLVI-WRSGNSVSLYRGVSYKDP 301
>gi|255546121|ref|XP_002514120.1| conserved hypothetical protein [Ricinus communis]
gi|223546576|gb|EEF48074.1| conserved hypothetical protein [Ricinus communis]
Length = 930
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 69/176 (39%), Positives = 103/176 (58%), Gaps = 11/176 (6%)
Query: 10 KLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRRGI 69
KLRKA K ++ E L + S + D E ++ EE F F K+G K Y+ +G+RG+
Sbjct: 715 KLRKAEKALAKVHEHL------DPSGLPTDLETISDEERFLFRKIGLSMKPYLFLGKRGV 768
Query: 70 YQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEEN---TIIMY 126
Y G I NMHLHWK + +KVIV+ S +VK IA L +GG+++ I II+Y
Sbjct: 769 YDGTIENMHLHWKYRELVKVIVRGKSFAQVKHIAISLEAESGGVLVSIERTTKGYAIIVY 828
Query: 127 RGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLRAQAE 182
RGKNY P E+M P+ L++++AL +S A+K +I L++ +ELL+ + E
Sbjct: 829 RGKNYLHP--EVMRPKNLLTKRQALVRSIELQRREALKHHISDLQERIELLKLELE 882
Score = 41.6 bits (96), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 47/93 (50%), Gaps = 2/93 (2%)
Query: 43 LTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKE- 101
LT +E F ++ R + +GR QG+ + W++ +K+ +K E
Sbjct: 529 LTDKEMTIFRRLARTVPPHFALGRNRQLQGLAKAIVKLWERSAIVKIAIKRGVQNTRNER 588
Query: 102 IAAELARLTGGIVLEIHEENTIIMYRGKNYAQP 134
+A EL LTGGI+L ++E I+ YRG ++ P
Sbjct: 589 MAEELKVLTGGILLSRNKE-YIVFYRGNDFLPP 620
>gi|242071513|ref|XP_002451033.1| hypothetical protein SORBIDRAFT_05g022980 [Sorghum bicolor]
gi|241936876|gb|EES10021.1| hypothetical protein SORBIDRAFT_05g022980 [Sorghum bicolor]
Length = 895
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 68/182 (37%), Positives = 110/182 (60%), Gaps = 13/182 (7%)
Query: 6 KILYKLRKARKKEERIVEGLKKIE----PKESSEMTHDPEILTPEEHFYFLKMGRKCKNY 61
K+ +KL A+KK E+ L K+E P E S PE +T EE F F K+G + K +
Sbjct: 552 KLEWKLSLAQKKMEKAERVLGKVETALRPTEDSR----PETITDEERFMFRKLGLRMKAF 607
Query: 62 VPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEEN 121
+ +GRRG++ G I NMHLHWK + +K++VK S +VK IA L +GGI++ + + +
Sbjct: 608 LLLGRRGVFDGTIENMHLHWKYRELVKILVKAKSFADVKRIALSLEAESGGILVSVDKVS 667
Query: 122 ---TIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLR 178
I+++RGKNY +P + + PR LS++KAL +S +A+ ++ KL +++ L+
Sbjct: 668 KGYAIVVFRGKNYRRPSS--LRPRNLLSKRKALARSIELQRHQALSRHFAKLNRKVAQLK 725
Query: 179 AQ 180
A+
Sbjct: 726 AE 727
Score = 37.4 bits (85), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 57 KCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLE 116
+ K+ VG G+ + ++ + WK + ++V V A ++ L R TGG+V+
Sbjct: 188 RIKSRTKVGGAGVTREIVEKIKEKWKTEEVVRVKVSGTPALNMRLFHEILERKTGGLVI- 246
Query: 117 IHEENTIIMYRGKNYAQPPT 136
++ +YRG +Y +P T
Sbjct: 247 WRSGTSVSLYRGVDYDEPET 266
>gi|297803062|ref|XP_002869415.1| hypothetical protein ARALYDRAFT_328739 [Arabidopsis lyrata subsp.
lyrata]
gi|297315251|gb|EFH45674.1| hypothetical protein ARALYDRAFT_328739 [Arabidopsis lyrata subsp.
lyrata]
Length = 775
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 75/209 (35%), Positives = 116/209 (55%), Gaps = 10/209 (4%)
Query: 4 EEKILYKLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKNYVP 63
E ++LY +K R+ E + + K ++P SE+ D E +T EE + K+G ++
Sbjct: 568 ELRLLYGKQKLRRAERDLAKVQKDLDP---SELPTDSETITEEERLLYRKIGLSMDPFLL 624
Query: 64 VGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEE--- 120
+GRR +Y G I NMHLHWK + +KVIV+ S +VK IA L +GG+++ + +
Sbjct: 625 LGRREVYDGTIENMHLHWKHRELVKVIVRGKSLPQVKHIAISLEAESGGVLVSVDKTMKG 684
Query: 121 NTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLR-A 179
+II+YRGKNY P + P L+RKKA +S A+K ++ LE+ +ELL+
Sbjct: 685 YSIILYRGKNYQMPFR--LRPSNLLTRKKAFARSIELQRREALKYHVADLEERIELLKTG 742
Query: 180 QAETRSENR-SDAAEDVQNTELDKPDFGS 207
Q + R R SD E+ +D+ DF S
Sbjct: 743 QDDDREPGRKSDGEEENLYLRVDESDFSS 771
>gi|356564786|ref|XP_003550629.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Glycine max]
Length = 794
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 66/183 (36%), Positives = 111/183 (60%), Gaps = 9/183 (4%)
Query: 4 EEKILYKLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKNYVP 63
E+K+ K RK E+ + + + ++P +++ D E LT EE F F K+G K Y+
Sbjct: 581 EKKLALAKSKFRKAEKALAKVQRDLDP---ADIPSDLETLTNEERFLFRKIGLSMKPYLL 637
Query: 64 VGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEE--- 120
+GRR +Y G I NMHLHWK + +K+IVK ++ +VK I+ L +GG+++ + ++
Sbjct: 638 LGRRDVYAGTIENMHLHWKYRELVKLIVKGRNSAQVKHISISLEAESGGVLVSVDKDTRG 697
Query: 121 -NTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLRA 179
+TII+YRGKNY P ++ P+ L+R++AL +S A+K +I LE+ + LL++
Sbjct: 698 HHTIIVYRGKNYFSP--RVVRPKNLLTRRQALARSVELQRREALKHHISDLEERIGLLKS 755
Query: 180 QAE 182
+ E
Sbjct: 756 ELE 758
Score = 40.8 bits (94), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
Query: 43 LTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKE- 101
LT +E F ++ R + +GR QG+ M W+ K+ +K +
Sbjct: 404 LTNKEMTNFRRLARTTAPHFALGRNRELQGLARAMVKLWETSAIAKIAIKRGVPNTCNDR 463
Query: 102 IAAELARLTGGIVLEIHEENTIIMYRGKNYAQP 134
+A EL +LTGG +L ++E I+ YRG ++ P
Sbjct: 464 MAEELRKLTGGTLLSRNKE-YIVFYRGNDFLPP 495
Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 47/91 (51%), Gaps = 2/91 (2%)
Query: 64 VGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEENTI 123
VG +GI Q ++ ++H W+ + +K + +K+ L GGIV+ ++I
Sbjct: 222 VGVKGITQELVASVHQKWRDAEVVKFKFGIPLSAHMKKAHQILESKIGGIVI-WRSGSSI 280
Query: 124 IMYRGKNYAQPPTEIMSPRITLSRKKALDKS 154
++YRG Y P E ++ L+++ A+D S
Sbjct: 281 VLYRGMAYKLPCIENYK-KVNLAKENAVDHS 310
>gi|77551737|gb|ABA94534.1| CRS1/YhbY domain containing protein, expressed [Oryza sativa
Japonica Group]
Length = 886
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 66/179 (36%), Positives = 110/179 (61%), Gaps = 6/179 (3%)
Query: 6 KILYKLRKARKKEERIVEGLKKIEPK-ESSEMTHDPEILTPEEHFYFLKMGRKCKNYVPV 64
K+ +KL+ A+KK E+ L K+E + +E PE +T EE F F K+G + K ++ +
Sbjct: 554 KLEWKLQLAQKKIEKAERVLGKVETALKPTEGIQPPETITDEERFMFRKLGLRMKAFLLL 613
Query: 65 GRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEEN--- 121
GRRG++ G I NMHLHWK + +K++VK S +VK+IA L +GGI++ + + +
Sbjct: 614 GRRGVFDGTIENMHLHWKYRELVKILVKAKSFGDVKKIALSLEAESGGILVSVDKVSKGY 673
Query: 122 TIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLRAQ 180
I+++RGK+YA+P + PR LS++KAL +S A+ +I L + ++ L+A+
Sbjct: 674 AIVVFRGKDYARPSK--LRPRNLLSKRKALARSIEIQRREALSHHIATLNRRVKKLKAE 730
>gi|357156286|ref|XP_003577404.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Brachypodium distachyon]
Length = 881
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 66/179 (36%), Positives = 110/179 (61%), Gaps = 6/179 (3%)
Query: 6 KILYKLRKARKKEERIVEGLKKIEPK-ESSEMTHDPEILTPEEHFYFLKMGRKCKNYVPV 64
K+ +KL A K+ + L K+E + SE T+ E +T EE F F K+G + K ++ +
Sbjct: 548 KLEWKLSLAEKRIAKAERVLGKVETALKPSEDTNPHETITEEERFMFRKLGLRMKAFLLL 607
Query: 65 GRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEEN--- 121
GRRG++ G I NMHLHWK + +K++VK S EVK IA L +GGI++ + + +
Sbjct: 608 GRRGVFDGTIENMHLHWKYRELVKILVKVKSFTEVKRIALSLEVESGGILVSVDKVSKGY 667
Query: 122 TIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLRAQ 180
I+++RGK+Y +P ++ PR LS++KAL +S ++A+ ++I KL + + LR++
Sbjct: 668 AIVVFRGKDYRRP--SMLRPRNLLSKRKALARSIEIQRMQALNRHIGKLNRRVNQLRSE 724
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 53 KMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKE-IAAELARLTG 111
++GR + +GR QG+ M W++ K+ +K E +A +L +LTG
Sbjct: 384 RLGRGLPPHFALGRSRQLQGLAAAMVKLWERSSIAKIALKRGVQLTTSERMAEDLKKLTG 443
Query: 112 GIVLEIHEENTIIMYRGKNY 131
G++L + ++ YRGK++
Sbjct: 444 GVMLS-RNNDFVVFYRGKDF 462
Score = 38.5 bits (88), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 51/112 (45%), Gaps = 6/112 (5%)
Query: 30 PKESSEMTHDP----EILTPEEHFYFLKMGR-KCKNYVPVGRRGIYQGVILNMHLHWKKH 84
P+ ++ T P E+ PE L+ + K+ + VG G+ + ++ + WK
Sbjct: 152 PEAAARATKSPVWMAELTLPEAELRRLRHATMRIKSRIQVGGAGVTREIVAKIKEKWKTD 211
Query: 85 QTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEENTIIMYRGKNYAQPPT 136
+ ++V V A ++ L R TGG+V+ ++ +YRG Y P T
Sbjct: 212 EVVRVKVSGTPALNMRLFHEILERKTGGLVI-WRSGTSVSLYRGVAYDVPET 262
>gi|224091282|ref|XP_002309217.1| predicted protein [Populus trichocarpa]
gi|222855193|gb|EEE92740.1| predicted protein [Populus trichocarpa]
Length = 977
Score = 110 bits (275), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 80/235 (34%), Positives = 125/235 (53%), Gaps = 15/235 (6%)
Query: 10 KLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRRGI 69
KL+K+ K ++ E L E +E+ D E ++ EE F F K+G K Y+ +GRRG+
Sbjct: 753 KLKKSEKDLAKVQENL------EPTELPTDLETISDEERFLFRKIGLSMKPYLFLGRRGV 806
Query: 70 YQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEEN---TIIMY 126
+ G I NMHLHWK + +K+IV+ +VK IA L +GG+++ + II+Y
Sbjct: 807 FDGTIENMHLHWKYRELVKIIVERKGIAQVKHIAISLEAESGGVLVSVDRTTKGYAIIVY 866
Query: 127 RGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLRAQAETRSE 186
RGKNY +P + M P L+R++AL +S A+K +I L++ +EL+ ++ E E
Sbjct: 867 RGKNYMRP--QAMRPENLLTRRQALARSVELQRYEALKHHITDLQERIELVTSELE---E 921
Query: 187 NRSDAAEDVQNTELDKPDFGSIPSMMECSENDPTTESLMASDSED-LSDIFETDS 240
+D +V K D SI + E E +P + + ED L D+ DS
Sbjct: 922 MEADKKSEVYKALYSKFDDASILNEDEEGEEEPILKVQYPNSEEDKLEDVPVYDS 976
Score = 41.6 bits (96), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 51 FLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAE-LARL 109
F ++ R + +GR QG+ M W++ K+ +K EI AE L RL
Sbjct: 575 FRRLARTTPPHFVLGRNRELQGLANAMVKLWERSAIAKIAIKRGVQYTRNEIMAEELKRL 634
Query: 110 TGGIVLEIHEENTIIMYRGKNYAQP 134
TGG +L ++E I+ YRG ++ P
Sbjct: 635 TGGTLLSRNKE-YIVFYRGNDFLPP 658
>gi|297831030|ref|XP_002883397.1| hypothetical protein ARALYDRAFT_898801 [Arabidopsis lyrata subsp.
lyrata]
gi|297329237|gb|EFH59656.1| hypothetical protein ARALYDRAFT_898801 [Arabidopsis lyrata subsp.
lyrata]
Length = 873
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 70/186 (37%), Positives = 112/186 (60%), Gaps = 16/186 (8%)
Query: 4 EEKILYKLRKARKKEERIVEGLKKIEPK-ESSEMTHDPEILTPEEHFYFLKMGRKCKNYV 62
E K+ + RK K E GL K+E + +E DP+ +T EE F F K+G K K ++
Sbjct: 597 ERKLAFAERKLLKAER----GLAKVEECLKPAEQREDPDSITDEERFMFRKLGLKMKAFL 652
Query: 63 PVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEEN- 121
+GRRG++ G + NMHLHWK + +K+IVK + + VK++A L +GGI++ I +
Sbjct: 653 LLGRRGVFDGTVENMHLHWKYRELVKIIVKAKTFDGVKKVALALEAESGGILVSIDKVTK 712
Query: 122 --TIIMYRGKNYAQPPTEIMSPRITLSRKKALDKS---KYRDGLRAVKKYIPKLEQELEL 176
II+YRGK+Y +P ++ P+ L+++KAL +S + R+GL K+I ++ + E
Sbjct: 713 GYAIIVYRGKDYKRP--TMLRPKNLLTKRKALARSIELQRREGLL---KHISTMQAKAEQ 767
Query: 177 LRAQAE 182
LRA+ E
Sbjct: 768 LRAEIE 773
Score = 45.8 bits (107), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 43 LTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKE- 101
L P+E ++ R + +GR QG+ M W+K K+ +K E
Sbjct: 418 LGPKEATALRRLARSIPPHFALGRSRQLQGLATAMVRLWEKSMLAKIAIKRGVQSTTSER 477
Query: 102 IAAELARLTGGIVLEIHEENTIIMYRGKNY 131
+A +L +LTGGI+L ++ ++ YRGKN+
Sbjct: 478 MAEDLKKLTGGILLS-RNKDFLVFYRGKNF 506
>gi|326492672|dbj|BAJ90192.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 879
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 63/179 (35%), Positives = 108/179 (60%), Gaps = 6/179 (3%)
Query: 6 KILYKLRKARKKEERIVEGLKKIEPK-ESSEMTHDPEILTPEEHFYFLKMGRKCKNYVPV 64
K+ +KL A K+ + L K+E + +E T PE +T EE F F K+G + K ++ +
Sbjct: 563 KLEWKLALAEKRIAKAERVLGKVETALKPTEDTKPPETITDEERFMFRKLGLRMKAFLLL 622
Query: 65 GRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEEN--- 121
GRRG++ G I NMHLHWK + +K++VK S +VK A L +GG+++ + + +
Sbjct: 623 GRRGVFDGTIENMHLHWKYRELVKILVKAKSFADVKRTALSLEVESGGVLVSVDKVSKGY 682
Query: 122 TIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLRAQ 180
I+++RGK+Y +P ++ PR LS++KAL +S + A+ ++I KL + + LR++
Sbjct: 683 AIVVFRGKDYKRP--SMLRPRNLLSKRKALARSIELQRMEALGRHIEKLNRRVNQLRSE 739
>gi|168024308|ref|XP_001764678.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162683972|gb|EDQ70377.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 625
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 70/181 (38%), Positives = 114/181 (62%), Gaps = 7/181 (3%)
Query: 3 AEEKILYKLRKARKKEERIVEGLKKIEPKES-SEMTHDPEILTPEEHFYFLKMGRKCKNY 61
A ++I KL A KK ER L K+E K + + +T D E L+ E + + K+G K K +
Sbjct: 401 ATDRIRSKLNLALKKMERAQLELNKVEAKTTPANVTLDKEHLSDGERYMYRKLGLKMKAF 460
Query: 62 VPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEI---H 118
+ +GRRG++ G + NMHLHWK + +K++VKT S E + IA L +GGI+++I
Sbjct: 461 LLLGRRGVFSGTVENMHLHWKYRELVKILVKT-SLPEAERIAKILENESGGILVDIITTS 519
Query: 119 EENTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLR 178
+ I+MYRGKNY Q P+E + PR L++++AL +S + +++K+I L++E+E ++
Sbjct: 520 KGQAIVMYRGKNY-QRPSE-LRPRHLLTKRQALKRSLEMQRMESLEKHIRVLKKEIETMQ 577
Query: 179 A 179
A
Sbjct: 578 A 578
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 54 MGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGI 113
+G + + + +GR G+ G++ +H W+ + KV + +K+ +L RLTGG+
Sbjct: 44 LGLQLQGRLKIGRLGVTPGIVEAIHERWRTCEIAKVKCDAPLSMNMKKAHEDLERLTGGL 103
Query: 114 VLEIHEENTIIMYRGKNYAQP 134
V+ + ++YRGK+Y P
Sbjct: 104 VI-WRSGSAAVVYRGKDYVHP 123
>gi|30686898|ref|NP_188947.2| CRM family member 3A [Arabidopsis thaliana]
gi|332643191|gb|AEE76712.1| CRM family member 3A [Arabidopsis thaliana]
Length = 881
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/186 (37%), Positives = 112/186 (60%), Gaps = 16/186 (8%)
Query: 4 EEKILYKLRKARKKEERIVEGLKKIEPK-ESSEMTHDPEILTPEEHFYFLKMGRKCKNYV 62
E K+ + RK K E GL K+E + +E DPE +T EE F F K+G K K ++
Sbjct: 602 ERKLAFAERKLLKAER----GLAKVEVCLKPAEQREDPESITDEERFMFRKLGLKMKAFL 657
Query: 63 PVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEEN- 121
+GRRG++ G + NMHLHWK + +K+IVK + + VK++A L +GGI++ I +
Sbjct: 658 LLGRRGVFDGTVENMHLHWKYRELVKIIVKAKTFDGVKKVALALEAESGGILVSIDKVTK 717
Query: 122 --TIIMYRGKNYAQPPTEIMSPRITLSRKKALDKS---KYRDGLRAVKKYIPKLEQELEL 176
II+YRG++Y +P ++ P+ L+++KAL +S + R+GL K+I ++ + +
Sbjct: 718 GYAIIVYRGQDYKRPT--MLRPKNLLTKRKALARSIELQRREGLL---KHISTMQAKAKQ 772
Query: 177 LRAQAE 182
LRA+ E
Sbjct: 773 LRAEIE 778
Score = 45.4 bits (106), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 43 LTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKE- 101
L P+E ++ R + +GR QG+ M W+K K+ +K E
Sbjct: 423 LGPKEATALRRLARSIPPHFALGRSRQLQGLATAMVRLWEKSMLAKIAIKRGVQSTTSER 482
Query: 102 IAAELARLTGGIVLEIHEENTIIMYRGKNY 131
+A +L +LTGGI+L ++ ++ YRGKN+
Sbjct: 483 MAEDLKKLTGGIMLS-RNKDFLVFYRGKNF 511
>gi|9294196|dbj|BAB02098.1| unnamed protein product [Arabidopsis thaliana]
Length = 850
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 69/186 (37%), Positives = 112/186 (60%), Gaps = 16/186 (8%)
Query: 4 EEKILYKLRKARKKEERIVEGLKKIEPK-ESSEMTHDPEILTPEEHFYFLKMGRKCKNYV 62
E K+ + RK K E GL K+E + +E DPE +T EE F F K+G K K ++
Sbjct: 571 ERKLAFAERKLLKAER----GLAKVEVCLKPAEQREDPESITDEERFMFRKLGLKMKAFL 626
Query: 63 PVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEEN- 121
+GRRG++ G + NMHLHWK + +K+IVK + + VK++A L +GGI++ I +
Sbjct: 627 LLGRRGVFDGTVENMHLHWKYRELVKIIVKAKTFDGVKKVALALEAESGGILVSIDKVTK 686
Query: 122 --TIIMYRGKNYAQPPTEIMSPRITLSRKKALDKS---KYRDGLRAVKKYIPKLEQELEL 176
II+YRG++Y +P ++ P+ L+++KAL +S + R+GL K+I ++ + +
Sbjct: 687 GYAIIVYRGQDYKRPT--MLRPKNLLTKRKALARSIELQRREGLL---KHISTMQAKAKQ 741
Query: 177 LRAQAE 182
LRA+ E
Sbjct: 742 LRAEIE 747
Score = 45.4 bits (106), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 43 LTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKE- 101
L P+E ++ R + +GR QG+ M W+K K+ +K E
Sbjct: 392 LGPKEATALRRLARSIPPHFALGRSRQLQGLATAMVRLWEKSMLAKIAIKRGVQSTTSER 451
Query: 102 IAAELARLTGGIVLEIHEENTIIMYRGKNY 131
+A +L +LTGGI+L ++ ++ YRGKN+
Sbjct: 452 MAEDLKKLTGGIMLS-RNKDFLVFYRGKNF 480
>gi|222616258|gb|EEE52390.1| hypothetical protein OsJ_34482 [Oryza sativa Japonica Group]
Length = 560
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 61/153 (39%), Positives = 98/153 (64%), Gaps = 6/153 (3%)
Query: 6 KILYKLRKARKKEERIVEGLKKIEPK-ESSEMTHDPEILTPEEHFYFLKMGRKCKNYVPV 64
K+ +KL+ A+KK E+ L K+E + +E PE +T EE F F K+G + K ++ +
Sbjct: 400 KLEWKLQLAQKKIEKAERVLGKVETALKPTEGIQPPETITDEERFMFRKLGLRMKAFLLL 459
Query: 65 GRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEEN--- 121
GRRG++ G I NMHLHWK + +K++VK S +VK+IA L +GGI++ + + +
Sbjct: 460 GRRGVFDGTIENMHLHWKYRELVKILVKAKSFGDVKKIALSLEAESGGILVSVDKVSKGY 519
Query: 122 TIIMYRGKNYAQPPTEIMSPRITLSRKKALDKS 154
I+++RGK+YA+P + PR LS++KAL +S
Sbjct: 520 AIVVFRGKDYARPSK--LRPRNLLSKRKALARS 550
>gi|168038664|ref|XP_001771820.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162676951|gb|EDQ63428.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1106
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 72/210 (34%), Positives = 125/210 (59%), Gaps = 10/210 (4%)
Query: 3 AEEKILYKLRKARKKEERIVEGLKKIEPKES-SEMTHDPEILTPEEHFYFLKMGRKCKNY 61
A ++I K++ A +K+ER + L KI+ K + ++ D E L+ E + + + G K K Y
Sbjct: 712 AMDRIRQKMKLALQKKERAMAELAKIDAKTNPTDAPLDKEFLSEAERYMYRQQGLKHKGY 771
Query: 62 VPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEI---H 118
+ +GRRG++ G + NMHLHWK + +K++VK A E ++ A L R +GGI+++I
Sbjct: 772 LLLGRRGVFGGTVENMHLHWKHRELVKILVKAPIA-EAQQTAKMLERESGGILVDIVNTS 830
Query: 119 EENTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLR 178
+ II+YRGKNY Q P+E + PR L++++AL +S +++++K+I L E+E ++
Sbjct: 831 KGQAIIVYRGKNY-QRPSE-LRPRHLLTKRQALKRSLEVQRMQSLEKHIQILMTEIETMQ 888
Query: 179 A---QAETRSENRSDAAEDVQNTELDKPDF 205
A + E + E ++A + D DF
Sbjct: 889 AGLNKMEEQDELENEAGTQGNLEDFDATDF 918
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 55/109 (50%), Gaps = 2/109 (1%)
Query: 27 KIEPKESSEMTHDPEILTPEEHFYFLK-MGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQ 85
+IE K+ E+ PE L+ +G + + + +GR G+ G++ +H W+ +
Sbjct: 308 QIEKKKRVRSPSVAELTLPEPELRRLRTLGLQLQGRLKIGRLGVTPGIVEAIHDRWRTSE 367
Query: 86 TLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEENTIIMYRGKNYAQP 134
KV + +K+ +L RLTGG+V+ + ++YRGK+Y P
Sbjct: 368 LAKVKCDAPLSMNMKKAHEDLERLTGGLVI-WRAGSAAVVYRGKDYVHP 415
>gi|357158137|ref|XP_003578028.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Brachypodium distachyon]
Length = 962
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 93/150 (62%), Gaps = 5/150 (3%)
Query: 34 SEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKT 93
+E+ D E +T EE F F ++G K K ++ +GRR ++ G + NMHLHWK + +K+IVK
Sbjct: 757 AELPTDLETVTDEERFLFRRIGLKMKAFLMLGRREVFAGTVQNMHLHWKHRELVKIIVKG 816
Query: 94 FSAEEVKEIAAELARLTGGIVLEIHEEN---TIIMYRGKNYAQPPTEIMSPRITLSRKKA 150
S +VK IA L +GG+++ + + +II+YRGKNY +P +I+ PR L+R++A
Sbjct: 817 KSFAQVKHIAISLEAESGGVLISLDKTTKGYSIIVYRGKNYKRP--QILKPRNLLTRRRA 874
Query: 151 LDKSKYRDGLRAVKKYIPKLEQELELLRAQ 180
+ +S A+ +I L Q++ L++Q
Sbjct: 875 MARSIELQRREALNHHISILRQKIWKLKSQ 904
Score = 41.2 bits (95), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 45/83 (54%), Gaps = 2/83 (2%)
Query: 53 KMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKE-IAAELARLTG 111
++ R+ + +GR +QG+ + W+K +K+ +K + +A E+ +LTG
Sbjct: 563 RLARQTAPHFALGRNREHQGLASAIVKLWEKSTIVKIAIKRGVPNTCNDRMAEEIKKLTG 622
Query: 112 GIVLEIHEENTIIMYRGKNYAQP 134
G+++ ++E II YRG ++ P
Sbjct: 623 GVLISRNKE-YIIFYRGNDFMTP 644
>gi|302766798|ref|XP_002966819.1| hypothetical protein SELMODRAFT_408011 [Selaginella moellendorffii]
gi|300164810|gb|EFJ31418.1| hypothetical protein SELMODRAFT_408011 [Selaginella moellendorffii]
Length = 672
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 62/159 (38%), Positives = 90/159 (56%), Gaps = 27/159 (16%)
Query: 15 RKKEERIVEG---LKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQ 71
RK + EG L++ EP E H + ++G K +N+ VG+RGIY
Sbjct: 106 RKHSSHLTEGKRCLRETEPLSEGEAAH------------YARIGNKNQNFASVGKRGIYG 153
Query: 72 GVILNMHLHWKKHQTLKV-IVKTFSAEEVKEIAAELARLTGGIVLEIHEENTIIMYRGKN 130
GVI N+H +WK H+T+++ + S EE + I AELARL+GGIVL++ E+ T+IM+RGKN
Sbjct: 154 GVIHNIHTNWKFHETVRIKCPRHNSMEETRRIGAELARLSGGIVLDVLEDRTVIMFRGKN 213
Query: 131 YAQPPTEIMSPRI-TLSRK---------KALDKSKYRDG 159
Y Q P E+ P + + R+ +ALD YR G
Sbjct: 214 Y-QTPEELYPPTLEAVDRRNADSRHHIQRALDSQVYRLG 251
>gi|297800788|ref|XP_002868278.1| hypothetical protein ARALYDRAFT_330061 [Arabidopsis lyrata subsp.
lyrata]
gi|297314114|gb|EFH44537.1| hypothetical protein ARALYDRAFT_330061 [Arabidopsis lyrata subsp.
lyrata]
Length = 919
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 64/176 (36%), Positives = 103/176 (58%), Gaps = 11/176 (6%)
Query: 10 KLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRRGI 69
KL KA + ++ E LK E + D E +T EE F F K+G + K ++ +GRRG+
Sbjct: 643 KLLKAERALAKVEESLKPAEQRT------DLEGITEEERFMFQKLGLRMKAFLLLGRRGV 696
Query: 70 YQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVL---EIHEENTIIMY 126
+ G + NMHLHWK + +K++VK S E K++A L +GGI++ +I + +I+Y
Sbjct: 697 FDGTVENMHLHWKYRELIKILVKAKSLEGAKKVAMALEAESGGILVSVDKISKGYAVIVY 756
Query: 127 RGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLRAQAE 182
RGK+Y +P T + P+ L+++KAL +S A+ K+I ++ E LRA+ E
Sbjct: 757 RGKDYKRPTT--LRPKNLLTKRKALARSLELQKREALIKHIEAVQTRSEQLRAEIE 810
>gi|297738658|emb|CBI27903.3| unnamed protein product [Vitis vinifera]
Length = 881
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 64/177 (36%), Positives = 106/177 (59%), Gaps = 6/177 (3%)
Query: 10 KLRKARKKEERIVEGLKKI-EPKESSEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRRG 68
KL A+ K ++ + L+K+ E E +E+ D E L+ EE F F K+G K ++ +G RG
Sbjct: 646 KLAHAKAKLKKTEKALRKVQEDLEPAELPMDLETLSDEERFLFRKIGLSMKPFLLLGTRG 705
Query: 69 IYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIH---EENTIIM 125
I+ G + NMHLHWK + +K+IVK + +VK IA L +GG+++ + + II+
Sbjct: 706 IFDGTVENMHLHWKYRELVKIIVKGKNFAQVKHIAISLEAESGGVLVSVDRTPKGYAIIV 765
Query: 126 YRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLRAQAE 182
YRGKNY +P + P+ L++++AL +S A+K +I LE+ ++LL++ E
Sbjct: 766 YRGKNYQRP--HALRPKNLLTKRQALARSIELQRHEALKHHISDLEERIKLLKSLPE 820
Score = 37.7 bits (86), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 53/111 (47%), Gaps = 3/111 (2%)
Query: 23 EGLKKIE-PKESSEMTHDPEILTPEEHFYFLK-MGRKCKNYVPVGRRGIYQGVILNMHLH 80
EGL+ +E T E + PE LK + + + VG G+ Q ++ +H
Sbjct: 242 EGLQPVERDGWGRRNTRMAERMVPEHELRRLKNIALRMLERIKVGAAGVTQSLVDAIHEK 301
Query: 81 WKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEENTIIMYRGKNY 131
W+K + +K+ + S+ +K L TGG+V+ +++++YRG Y
Sbjct: 302 WRKDEVVKLKFEGPSSCNMKRTHEILETRTGGLVI-WRTGSSVVLYRGMAY 351
>gi|359484307|ref|XP_002279505.2| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Vitis vinifera]
Length = 884
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 64/177 (36%), Positives = 106/177 (59%), Gaps = 6/177 (3%)
Query: 10 KLRKARKKEERIVEGLKKI-EPKESSEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRRG 68
KL A+ K ++ + L+K+ E E +E+ D E L+ EE F F K+G K ++ +G RG
Sbjct: 649 KLAHAKAKLKKTEKALRKVQEDLEPAELPMDLETLSDEERFLFRKIGLSMKPFLLLGTRG 708
Query: 69 IYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIH---EENTIIM 125
I+ G + NMHLHWK + +K+IVK + +VK IA L +GG+++ + + II+
Sbjct: 709 IFDGTVENMHLHWKYRELVKIIVKGKNFAQVKHIAISLEAESGGVLVSVDRTPKGYAIIV 768
Query: 126 YRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLRAQAE 182
YRGKNY +P + P+ L++++AL +S A+K +I LE+ ++LL++ E
Sbjct: 769 YRGKNYQRP--HALRPKNLLTKRQALARSIELQRHEALKHHISDLEERIKLLKSLPE 823
Score = 37.7 bits (86), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 53/111 (47%), Gaps = 3/111 (2%)
Query: 23 EGLKKIE-PKESSEMTHDPEILTPEEHFYFLK-MGRKCKNYVPVGRRGIYQGVILNMHLH 80
EGL+ +E T E + PE LK + + + VG G+ Q ++ +H
Sbjct: 245 EGLQPVERDGWGRRNTRMAERMVPEHELRRLKNIALRMLERIKVGAAGVTQSLVDAIHEK 304
Query: 81 WKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEENTIIMYRGKNY 131
W+K + +K+ + S+ +K L TGG+V+ +++++YRG Y
Sbjct: 305 WRKDEVVKLKFEGPSSCNMKRTHEILETRTGGLVI-WRTGSSVVLYRGMAY 354
>gi|147852748|emb|CAN79523.1| hypothetical protein VITISV_010525 [Vitis vinifera]
Length = 902
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 53/147 (36%), Positives = 94/147 (63%), Gaps = 5/147 (3%)
Query: 39 DPEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEE 98
DPE +T EE F F K+G + K ++ +GRRG++ G + NMHLHWK + +K+IVK + ++
Sbjct: 641 DPESITDEERFMFRKLGLRMKAFLLLGRRGVFSGTVENMHLHWKYRELVKIIVKAKTFDQ 700
Query: 99 VKEIAAELARLTGGIVLEIHEEN---TIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSK 155
VK+ A L +GG+++ + + + I+++RGK+Y +P T + P+ L+++KAL +S
Sbjct: 701 VKKTALALESESGGVLVSVDKVSKGFAIVVFRGKDYQRPST--LRPKNLLTKRKALARSI 758
Query: 156 YRDGLRAVKKYIPKLEQELELLRAQAE 182
A+ +I L++ +E LR++ E
Sbjct: 759 ELQRREALYNHISALQRNVEKLRSEIE 785
Score = 42.0 bits (97), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
Query: 41 EILTPEEHFYFLK-MGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEV 99
E+ PE L+ + + KN +G G+ Q V+ + WK + +K+ + +A +
Sbjct: 217 ELTLPESELRRLRNLTMRTKNKTKIGGGGVTQAVVDMIREKWKTSEIVKLKCEGAAALNM 276
Query: 100 KEIAAELARLTGGIVLEIHEENTIIMYRGKNYAQP 134
+ I L R TGG+V+ ++ +YRG +Y P
Sbjct: 277 RRIHEILERKTGGLVI-WRSGTSVSLYRGVSYEVP 310
>gi|225432918|ref|XP_002280226.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic [Vitis vinifera]
gi|297737163|emb|CBI26364.3| unnamed protein product [Vitis vinifera]
Length = 902
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 53/147 (36%), Positives = 94/147 (63%), Gaps = 5/147 (3%)
Query: 39 DPEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEE 98
DPE +T EE F F K+G + K ++ +GRRG++ G + NMHLHWK + +K+IVK + ++
Sbjct: 641 DPESITDEERFMFRKLGLRMKAFLLLGRRGVFSGTVENMHLHWKYRELVKIIVKAKTFDQ 700
Query: 99 VKEIAAELARLTGGIVLEIHEEN---TIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSK 155
VK+ A L +GG+++ + + + I+++RGK+Y +P T + P+ L+++KAL +S
Sbjct: 701 VKKTALALESESGGVLVSVDKVSKGFAIVVFRGKDYQRPST--LRPKNLLTKRKALARSI 758
Query: 156 YRDGLRAVKKYIPKLEQELELLRAQAE 182
A+ +I L++ +E LR++ E
Sbjct: 759 ELQRREALYNHISALQRNVEKLRSEIE 785
Score = 42.0 bits (97), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
Query: 41 EILTPEEHFYFLK-MGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEV 99
E+ PE L+ + + KN +G G+ Q V+ + WK + +K+ + +A +
Sbjct: 217 ELTLPESELRRLRNLTMRTKNKTKIGGGGVTQAVVDMIREKWKTSEIVKLKCEGAAALNM 276
Query: 100 KEIAAELARLTGGIVLEIHEENTIIMYRGKNYAQP 134
+ I L R TGG+V+ ++ +YRG +Y P
Sbjct: 277 RRIHEILERKTGGLVI-WRSGTSVSLYRGVSYEVP 310
>gi|2244807|emb|CAB10230.1| hypothetical protein [Arabidopsis thaliana]
gi|7268157|emb|CAB78493.1| hypothetical protein [Arabidopsis thaliana]
Length = 918
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 63/176 (35%), Positives = 103/176 (58%), Gaps = 11/176 (6%)
Query: 10 KLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRRGI 69
KL KA + ++ E LK E + D E +T EE F F K+G K K ++ +GRRG+
Sbjct: 649 KLLKAERALAKVEESLKPAEQR------TDLEGITEEERFMFQKLGLKMKAFLLLGRRGV 702
Query: 70 YQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVL---EIHEENTIIMY 126
+ G + NMHLHWK + +K++VK + E +++A L +GGI++ +I + +I+Y
Sbjct: 703 FDGTVENMHLHWKYRELIKILVKAKTLEGAQKVAMALEAESGGILVSVDKISKGYAVIVY 762
Query: 127 RGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLRAQAE 182
RGK+Y +P T + P+ L+++KAL +S A+ K+I ++ E LRA+ E
Sbjct: 763 RGKDYKRPTT--LRPKNLLTKRKALARSLELQKREALIKHIEAIQTRSEQLRAEIE 816
>gi|334186525|ref|NP_193187.3| CRM family member 3B [Arabidopsis thaliana]
gi|332658053|gb|AEE83453.1| CRM family member 3B [Arabidopsis thaliana]
Length = 907
Score = 103 bits (258), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 63/176 (35%), Positives = 103/176 (58%), Gaps = 11/176 (6%)
Query: 10 KLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRRGI 69
KL KA + ++ E LK E + D E +T EE F F K+G K K ++ +GRRG+
Sbjct: 638 KLLKAERALAKVEESLKPAEQR------TDLEGITEEERFMFQKLGLKMKAFLLLGRRGV 691
Query: 70 YQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVL---EIHEENTIIMY 126
+ G + NMHLHWK + +K++VK + E +++A L +GGI++ +I + +I+Y
Sbjct: 692 FDGTVENMHLHWKYRELIKILVKAKTLEGAQKVAMALEAESGGILVSVDKISKGYAVIVY 751
Query: 127 RGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLRAQAE 182
RGK+Y +P T + P+ L+++KAL +S A+ K+I ++ E LRA+ E
Sbjct: 752 RGKDYKRPTT--LRPKNLLTKRKALARSLELQKREALIKHIEAIQTRSEQLRAEIE 805
>gi|115478793|ref|NP_001062990.1| Os09g0363100 [Oryza sativa Japonica Group]
gi|48716728|dbj|BAD23409.1| putative CRS1 [Oryza sativa Japonica Group]
gi|50726191|dbj|BAD33710.1| putative CRS1 [Oryza sativa Japonica Group]
gi|113631223|dbj|BAF24904.1| Os09g0363100 [Oryza sativa Japonica Group]
gi|125591023|gb|EAZ31373.1| hypothetical protein OsJ_15500 [Oryza sativa Japonica Group]
Length = 947
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 59/153 (38%), Positives = 92/153 (60%), Gaps = 11/153 (7%)
Query: 34 SEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKT 93
+E+ D E +T EE F ++G K K ++ +GRR ++ G + NMHLHWK + +KV+VK
Sbjct: 742 AELPTDLETVTDEERFLLRRIGLKMKAFLMLGRREVFDGTVQNMHLHWKHRELVKVLVKG 801
Query: 94 FSAEEVKEIAAELARLTGGIVLEIHEEN---TIIMYRGKNYAQPPTEIMSPRITLSRKKA 150
S +VK IA L +GG+++ + + II+YRGKNY P +I+ PR LSR+KA
Sbjct: 802 KSFPQVKHIAISLEAESGGVLISVDKTTKGYAIILYRGKNYKTP--QILKPRNLLSRRKA 859
Query: 151 LDKS---KYRDGLRAVKKYIPKLEQELELLRAQ 180
L +S + R+GL +I L ++ L++Q
Sbjct: 860 LARSIELQRREGL---NHHISNLRDKIWKLKSQ 889
Score = 40.8 bits (94), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Query: 53 KMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKE-IAAELARLTG 111
++ R+ + +GR +QG+ + W+K K+ +K + +A E+ +LTG
Sbjct: 548 RLARQTAPHFALGRNREHQGLATAIVKLWEKSSIAKIAIKRGVPNTCNDRMAEEIRKLTG 607
Query: 112 GIVLEIHEENTIIMYRGKNYAQP 134
G++L ++E I+ YRG ++ P
Sbjct: 608 GVLLSRNKE-YIVFYRGNDFITP 629
>gi|125549065|gb|EAY94887.1| hypothetical protein OsI_16687 [Oryza sativa Indica Group]
Length = 893
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 59/153 (38%), Positives = 92/153 (60%), Gaps = 11/153 (7%)
Query: 34 SEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKT 93
+E+ D E +T EE F ++G K K ++ +GRR ++ G + NMHLHWK + +KV+VK
Sbjct: 687 AELPTDLETVTDEERFLLRRIGLKMKAFLMLGRREVFDGTVQNMHLHWKHRELVKVLVKG 746
Query: 94 FSAEEVKEIAAELARLTGGIVLEIHEEN---TIIMYRGKNYAQPPTEIMSPRITLSRKKA 150
S +VK IA L +GG+++ + + II+YRGKNY P +I+ PR LSR+KA
Sbjct: 747 KSFPQVKHIAISLEAESGGVLISVDKTTKGYAIILYRGKNYKTP--QILKPRNLLSRRKA 804
Query: 151 LDKS---KYRDGLRAVKKYIPKLEQELELLRAQ 180
L +S + R+GL +I L ++ L++Q
Sbjct: 805 LARSIELQRREGL---NHHISNLRDKIWKLKSQ 834
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Query: 53 KMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKE-IAAELARLTG 111
++ R+ + +GR +QG+ + W+K K+ +K + +A E+ +LTG
Sbjct: 493 RLARQTAPHFALGRNREHQGLATAIVKLWEKSSIAKIAIKRGVPNTCNDRMAEEIRKLTG 552
Query: 112 GIVLEIHEENTIIMYRGKNYAQP 134
G++L ++E I+ YRG ++ P
Sbjct: 553 GVLLSRNKE-YIVFYRGNDFITP 574
>gi|255551945|ref|XP_002517017.1| conserved hypothetical protein [Ricinus communis]
gi|223543652|gb|EEF45180.1| conserved hypothetical protein [Ricinus communis]
Length = 773
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 62/173 (35%), Positives = 104/173 (60%), Gaps = 6/173 (3%)
Query: 10 KLRKARKKEERIVEGLKKIEP-KESSEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRRG 68
KL A KK + L K+E + +E DPE +T EE F F K+G + K ++ +GRRG
Sbjct: 492 KLAFAEKKLMKAERALSKVEVFLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRG 551
Query: 69 IYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEEN---TIIM 125
++ G + NMHLHWK + +K+I+K + E+VK+IA L +GGI++ + + II+
Sbjct: 552 VFDGTVENMHLHWKYRELVKIILKAKNIEQVKKIALALEAESGGILVSVDRVSKGYAIIV 611
Query: 126 YRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLR 178
+RGK+Y +P + P L+++KAL +S A+ K+I L+++++ +R
Sbjct: 612 FRGKDYQRPSK--LRPGNLLTKRKALARSIEIQRSEALLKHISALQKKVDKIR 662
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 53/107 (49%), Gaps = 2/107 (1%)
Query: 33 SSEMTHDPEILTPEEHFYFLK-MGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIV 91
S T E+ PE L+ + + K+ V V G+ Q V+ ++H WK + ++V V
Sbjct: 94 SKSRTQLAELTLPESELRRLRNLTYQIKSKVRVKGAGVTQEVVDSIHDRWKTSEIVRVKV 153
Query: 92 KTFSAEEVKEIAAELARLTGGIVLEIHEENTIIMYRGKNYAQPPTEI 138
+ A ++ + L R TGG+V+ ++ +YRG +Y P ++
Sbjct: 154 EGAPALNMRRMHEILERKTGGLVI-WRSGTSVSLYRGVSYEDPSVQL 199
>gi|242044486|ref|XP_002460114.1| hypothetical protein SORBIDRAFT_02g022940 [Sorghum bicolor]
gi|241923491|gb|EER96635.1| hypothetical protein SORBIDRAFT_02g022940 [Sorghum bicolor]
Length = 962
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 55/150 (36%), Positives = 92/150 (61%), Gaps = 5/150 (3%)
Query: 34 SEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKT 93
+E+ D E +T EE F F ++G K + ++ +GRR ++ G + NMHLHWK + +K+IV+
Sbjct: 755 AELPTDLETVTDEERFLFRRIGLKMRAFLMLGRREVFDGTVQNMHLHWKHRELVKIIVRG 814
Query: 94 FSAEEVKEIAAELARLTGGIVLEIHEEN---TIIMYRGKNYAQPPTEIMSPRITLSRKKA 150
S +VK IA L + G+++ + + + II YRGKNY +P +IM PR L+R++A
Sbjct: 815 KSFAQVKHIAISLEAESEGVLISLDKTSKGYAIIFYRGKNYRRP--QIMKPRNLLTRRQA 872
Query: 151 LDKSKYRDGLRAVKKYIPKLEQELELLRAQ 180
L +S A+K +I L+ ++ L++Q
Sbjct: 873 LARSIELQRREALKHHISSLQGKIWKLQSQ 902
Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Query: 53 KMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKE-IAAELARLTG 111
++ R+ + +GR +QG+ M W+K K+ +K + +A E+ +LTG
Sbjct: 561 RLSRQTAPHFALGRNREHQGLAAAMVKLWEKSAIAKIAIKRGVPNTCNDRMAEEIKKLTG 620
Query: 112 GIVLEIHEENTIIMYRGKNYAQP 134
G++L ++E I+ YRG ++ P
Sbjct: 621 GVLLSRNKE-YIVFYRGNDFIAP 642
Score = 39.3 bits (90), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 57 KCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLE 116
+ K + VG G+ Q ++ ++H WK + +K+ + + +K L TGG+V+
Sbjct: 367 RMKERIKVGPGGVTQDIVESIHRKWKVDEVVKMRFEGPPSLNMKRTHDLLEDRTGGVVI- 425
Query: 117 IHEENTIIMYRGKNY 131
++++YRG NY
Sbjct: 426 WRSGRSVVLYRGMNY 440
>gi|154986383|gb|ABS89145.1| CFM2 [Zea mays]
Length = 942
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 57/169 (33%), Positives = 101/169 (59%), Gaps = 8/169 (4%)
Query: 15 RKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVI 74
+ K E+++E L+K P +E+ E ++ +E + K+G K K ++ +GRRG++ G I
Sbjct: 506 KAKAEKLIEELEKASPLSKAEVR---ETISEDERYMLRKVGLKMKQFLLLGRRGVFDGTI 562
Query: 75 LNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVL---EIHEENTIIMYRGKNY 131
NMHLHWK + +K+I K E+V+ A L +GGI++ ++ + + II+YRGKNY
Sbjct: 563 ENMHLHWKYRELVKIICKEHRLEDVEYAARTLEAESGGILVAVEKVSKGHAIIVYRGKNY 622
Query: 132 AQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLRAQ 180
+P + P+ LS++ AL +S +++K ++ KL + ++ LR Q
Sbjct: 623 KRPSK--LRPKTLLSKRDALKRSLENQRCKSLKVHVLKLSKNIDYLRDQ 669
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 51/95 (53%), Gaps = 2/95 (2%)
Query: 41 EILTPEEHFYFLK-MGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEV 99
E+ P + L+ +G + + + VG+ GI +G++ +H W+ + +K+ + A +
Sbjct: 43 ELALPRDELRRLQGIGIRVRKRLKVGKAGITEGIVNGIHERWRNAEVVKLRCEDVWAMNM 102
Query: 100 KEIAAELARLTGGIVLEIHEENTIIMYRGKNYAQP 134
+ L R TGG+V+ +TII+YRG NY P
Sbjct: 103 RRTHEILERKTGGLVI-WRSGSTIILYRGTNYTYP 136
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 2/100 (2%)
Query: 40 PEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEV 99
P LT E ++ + +GR QG+ +M W++ + K+ +K +
Sbjct: 333 PPKLTDREMTILRRLAHALPFHYALGRSSNLQGLAASMIKLWERCEVAKIALKRDAHNTD 392
Query: 100 KE-IAAELARLTGGIVLEIHEENTIIMYRGKNYAQPPTEI 138
E I E+ LTGG +L +E +I+ YRGK++ P +
Sbjct: 393 SELITEEVKELTGGTLLSRDKE-SIVFYRGKDFLPPAVSL 431
>gi|15229636|ref|NP_188468.1| CRS1 / YhbY (CRM) domain-containing protein [Arabidopsis thaliana]
gi|11994102|dbj|BAB01105.1| unnamed protein product [Arabidopsis thaliana]
gi|17380904|gb|AAL36264.1| unknown protein [Arabidopsis thaliana]
gi|332642570|gb|AEE76091.1| CRS1 / YhbY (CRM) domain-containing protein [Arabidopsis thaliana]
Length = 848
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 66/191 (34%), Positives = 114/191 (59%), Gaps = 6/191 (3%)
Query: 5 EKILYKLRKARKKEERIVEGLKKIEPKE-SSEMTHDPEILTPEEHFYFLKMGRKCKNYVP 63
++I +KL A+ K +R + L KIE + +D E+++ EE F K+G K K Y+P
Sbjct: 614 KRIQHKLNLAQSKFQRAEKLLSKIEASMIPNGPDYDQEVISEEERAMFRKVGLKMKAYLP 673
Query: 64 VGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEEN-- 121
+G RG++ GVI NMHLHWK + +K+I K + V+E A L +GG+++ I +
Sbjct: 674 IGIRGVFDGVIENMHLHWKHRELVKLISKQKNQAFVEETARLLEYESGGVLVAIEKVPKG 733
Query: 122 -TIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLRAQ 180
+I YRGKNY +P + + PR L++ KAL +S A+ ++I +LE+ +E +++Q
Sbjct: 734 FALIYYRGKNYRRPIS--LRPRNLLTKAKALKRSIAMQRHEALSQHISELERTIEQMQSQ 791
Query: 181 AETRSENRSDA 191
+++ + S++
Sbjct: 792 LTSKNPSYSES 802
Score = 40.8 bits (94), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 57/112 (50%), Gaps = 7/112 (6%)
Query: 43 LTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVK-TFSAEEVKE 101
LT E K+G+ + +GR +QG+ + W+K K+ VK K
Sbjct: 442 LTNAEMTNLRKIGKTLPCHFALGRNRNHQGLAAAILQIWEKSLIAKIAVKRGIQNTNNKL 501
Query: 102 IAAELARLTGGIVLEIHEENTIIMYRGKNYAQPPTEIMSPRITLSRKKALDK 153
+A E+ LTGG++L + + I++YRGK++ P+ + + TL+ ++ L K
Sbjct: 502 MADEVKTLTGGVLL-LRNKYYIVIYRGKDFL--PSSVAA---TLAERQELTK 547
>gi|413918579|gb|AFW58511.1| CFM2 [Zea mays]
Length = 1039
Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 57/169 (33%), Positives = 101/169 (59%), Gaps = 8/169 (4%)
Query: 15 RKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVI 74
+ K E+++E L+K P +E+ E ++ +E + K+G K K ++ +GRRG++ G I
Sbjct: 603 KAKAEKLIEELEKASPLSKAEVR---ETISEDERYMLRKVGLKMKQFLLLGRRGVFDGTI 659
Query: 75 LNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVL---EIHEENTIIMYRGKNY 131
NMHLHWK + +K+I K E+V+ A L +GGI++ ++ + + II+YRGKNY
Sbjct: 660 ENMHLHWKYRELVKIICKEHRLEDVEYAARTLEAESGGILVAVEKVSKGHAIIVYRGKNY 719
Query: 132 AQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLRAQ 180
+P + P+ LS++ AL +S +++K ++ KL + ++ LR Q
Sbjct: 720 KRPSK--LRPKTLLSKRDALKRSLENQRCKSLKVHVLKLSKNIDYLRDQ 766
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 51/95 (53%), Gaps = 2/95 (2%)
Query: 41 EILTPEEHFYFLK-MGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEV 99
E+ P + L+ +G + + + VG+ GI +G++ +H W+ + +K+ + A +
Sbjct: 140 ELALPRDELRRLQGIGIRVRKRLKVGKAGITEGIVNGIHERWRNAEVVKLRCEDVWAMNM 199
Query: 100 KEIAAELARLTGGIVLEIHEENTIIMYRGKNYAQP 134
+ L R TGG+V+ +TII+YRG NY P
Sbjct: 200 RRTHEILERKTGGLVI-WRSGSTIILYRGTNYTYP 233
Score = 39.3 bits (90), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 36/165 (21%), Positives = 75/165 (45%), Gaps = 15/165 (9%)
Query: 40 PEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEV 99
P LT E ++ + +GR QG+ +M W++ + K+ +K +
Sbjct: 430 PPKLTDREMTILRRLAHALPFHYALGRSSNLQGLAASMIKLWERCEVAKIALKRDAHNTD 489
Query: 100 KE-IAAELARLTGGIVLEIHEENTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRD 158
E I E+ LTGG +L +E +I+ YRGK++ P + + +++ L S
Sbjct: 490 SELITEEVKELTGGTLLSRDKE-SIVFYRGKDFLPPAVS-----LAIEKRRKLGSSTIYK 543
Query: 159 GLRAVKKYIP-------KLEQELEL-LRAQAETRSENRSDAAEDV 195
+++ +P K+ ++ + +R + + +ENR+++ V
Sbjct: 544 AKPGIEESMPTQNDSVLKVSSDVSVHVREEGTSVTENRAESLNTV 588
Score = 37.7 bits (86), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 64 VGRRGIYQGVILNMHLHWKKHQTLKVIVKTFS-AEEVKEIAAELARLTGGIVLEIHEENT 122
+GR GV + H+KKH V +K + ++++ +EL TG +++ E N
Sbjct: 932 IGRNNAITGVAKTIKTHFKKHPLAIVNIKNRADGTPIQQLISELEEATGSVLVS-RETNK 990
Query: 123 IIMYRG 128
+I+YRG
Sbjct: 991 VILYRG 996
>gi|357496109|ref|XP_003618343.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago
truncatula]
gi|355493358|gb|AES74561.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago
truncatula]
Length = 1096
Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 63/185 (34%), Positives = 109/185 (58%), Gaps = 10/185 (5%)
Query: 2 TAEEKILYKLRKA---RKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKC 58
A ++ +KL +A ++K E+++E L+K E + E+ D E +T EE + ++G K
Sbjct: 515 AAIQRTSFKLAQALEKKEKAEKLLESLEKDESLQEEEI--DKESITEEERYMLRRIGLKM 572
Query: 59 KNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIH 118
K ++ +GRRG++ G + NMHLHWK + +K+I S E + A L +GGI++ +
Sbjct: 573 KPFLLLGRRGVFDGTVENMHLHWKYRELVKIICNQESVEYAHQTARTLEAESGGILVAVE 632
Query: 119 EEN---TIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELE 175
N II+YRGKNY++P + + PR L++K+AL +S A+K ++ KL++ +
Sbjct: 633 RVNKGYAIIVYRGKNYSRPDS--LRPRTLLNKKQALKRSIEAQRREALKLHVLKLDKNIN 690
Query: 176 LLRAQ 180
L+ Q
Sbjct: 691 ELKHQ 695
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 43 LTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEI 102
LT E ++G + K + VG+ G+ +G++ +H W++ + ++V+ + +K
Sbjct: 151 LTDGEILRLRELGYQMKQKIKVGKAGVTEGIVNGIHERWRRSEVVRVVCEDLCRINMKRT 210
Query: 103 AAELARLTGGIVLEIHEENTIIMYRGKNYAQP 134
L R TGG+V+ + II+YRG +Y P
Sbjct: 211 HDILERKTGGLVV-WRSGSKIILYRGIDYKYP 241
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 2/90 (2%)
Query: 43 LTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVK-TFSAEEVKE 101
LT +E ++GR + +GR QGV + W++ + + + VK ++
Sbjct: 369 LTDDEMTTLKRLGRTLPCHFALGRNWKLQGVAAAIIKFWERCEIVNIAVKRGVQNTSNRK 428
Query: 102 IAAELARLTGGIVLEIHEENTIIMYRGKNY 131
+A E+ LTGG +L ++E I++YRGK++
Sbjct: 429 MAEEIKYLTGGTLLSRNKE-VIVIYRGKDF 457
>gi|449432614|ref|XP_004134094.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Cucumis sativus]
gi|449504099|ref|XP_004162252.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Cucumis sativus]
Length = 874
Score = 100 bits (249), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 67/206 (32%), Positives = 117/206 (56%), Gaps = 12/206 (5%)
Query: 39 DPEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEE 98
+P+ +T EE F F K+G + K ++ +GRR ++ G + NMHLHWK + +K+++K S +
Sbjct: 653 EPDSITEEERFMFRKLGLRMKAFLLLGRREVFDGTVENMHLHWKYRELVKIMIKANSFDH 712
Query: 99 VKEIAAELARLTGGIVLEIHEEN---TIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSK 155
VK IA +L +GG+++ I + + II+YRGK+Y +P ++ P+ L+++KAL +S
Sbjct: 713 VKNIALQLEAESGGVLVSIDKVSKGYAIIVYRGKDYKRP--SLLRPKNLLTKRKALARSI 770
Query: 156 YRDGLRAVKKYIPKLEQELELLRAQAETRSENRSDAAEDVQNTELDKPDFGSIPSMMEC- 214
A+ K+I ++ ++ L ++ E + E D ++V LD + P+ +
Sbjct: 771 ELQRHEALLKHISAMQSKVGKLNSEIE-QMEKVKDQGDEVLYNTLDS----AYPTDNDSE 825
Query: 215 SENDPTTESL-MASDSEDLSDIFETD 239
EN T E+ SD ED DI +D
Sbjct: 826 DENSDTYEAYDQDSDVEDEDDIMASD 851
Score = 40.8 bits (94), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Query: 53 KMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKE-IAAELARLTG 111
++ R+ + +GR QG+ + M W++ K+ +K E +A E+ +LTG
Sbjct: 455 RLARRLPPHFALGRNRQLQGLAIAMTKLWERSLIAKIALKRGVQLTTSERMAEEIKKLTG 514
Query: 112 GIVLEIHEENTIIMYRGKNYAQP 134
G++L ++ ++ YRGK++ P
Sbjct: 515 GMLLS-RNKDFLVFYRGKSFLSP 536
Score = 38.9 bits (89), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 64 VGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEENTI 123
+G G+ Q V+ +H WK + +++ + A +K + L R TGG+V+ ++
Sbjct: 258 IGGGGVTQAVVDVIHEKWKSSEIVRLKILGPPALNMKRMHEILERKTGGLVI-WRSGTSL 316
Query: 124 IMYRGKNYAQPPTEIMSPRI 143
+YRG +Y P + RI
Sbjct: 317 SLYRGVSYELPEAPQFNKRI 336
>gi|302805129|ref|XP_002984316.1| hypothetical protein SELMODRAFT_120007 [Selaginella moellendorffii]
gi|300148165|gb|EFJ14826.1| hypothetical protein SELMODRAFT_120007 [Selaginella moellendorffii]
Length = 692
Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 60/152 (39%), Positives = 95/152 (62%), Gaps = 13/152 (8%)
Query: 34 SEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKT 93
SE D E +T EE + F K+G + ++ +GRRG++ GVI NMHLHWK + +K+I+K
Sbjct: 478 SEHPRDRETITEEERYMFKKLGLRMDAFLLIGRRGVFDGVIENMHLHWKHRELVKLILK- 536
Query: 94 FSAEEVKEIAAELARL----TGGIVLEI---HEENTIIMYRGKNYAQPPTEIMSPRITLS 146
E+ K IA E+A++ +GGI++ + + II+YRGKNY +P + PR L+
Sbjct: 537 ---EKDKAIALEVAKMLEIESGGILVGVVTTSKGQAIIVYRGKNYQRPAE--LRPRSLLT 591
Query: 147 RKKALDKSKYRDGLRAVKKYIPKLEQELELLR 178
++KAL +SK +A++ +I KLE+ + LR
Sbjct: 592 KRKALARSKEIQRKKALQLHIEKLEELIMKLR 623
Score = 45.8 bits (107), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Query: 41 EILTPEEHFYFL-KMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEV 99
E+ PE L ++ + N + VG G+ + V+ ++H W+K + +K+ +A +
Sbjct: 77 ELTIPELELRRLQRIAIRVVNPIKVGYLGVTKAVVQDIHRRWQKCEVVKIQCDGPAAINM 136
Query: 100 KEIAAELARLTGGIVLEIHEENTIIMYRGKNY 131
K+ EL TGG+V+ I+YRGK Y
Sbjct: 137 KQTHDELETKTGGLVV-WRTGGMAILYRGKGY 167
>gi|414885161|tpg|DAA61175.1| TPA: hypothetical protein ZEAMMB73_652631 [Zea mays]
Length = 964
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 90/150 (60%), Gaps = 5/150 (3%)
Query: 34 SEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKT 93
+E+ D E +T EE F F ++G K + ++ +GRR ++ G + NMHLHWK + +K++V+
Sbjct: 759 AELPTDLETVTDEERFLFRRIGLKMRAFLMLGRREVFDGTVQNMHLHWKHRELVKIVVRG 818
Query: 94 FSAEEVKEIAAELARLTGGIVLEIHEEN---TIIMYRGKNYAQPPTEIMSPRITLSRKKA 150
S + K IA L + G+++ + + II YRGKNY +P +IM PR L+R++A
Sbjct: 819 KSFAQAKHIAISLEAESEGVLISLDKTTKGYVIIFYRGKNYRRP--QIMKPRNLLTRRQA 876
Query: 151 LDKSKYRDGLRAVKKYIPKLEQELELLRAQ 180
L +S A+K +I L+ ++ L++Q
Sbjct: 877 LARSIELQRREALKHHISSLQGKISKLQSQ 906
Score = 42.4 bits (98), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Query: 53 KMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKE-IAAELARLTG 111
++ R+ + +GR +QG+ M W+K K+ +K + +A E+ +LTG
Sbjct: 565 RLARQTAPHFALGRNREHQGLAAAMVKLWEKSAIAKIAIKRGIPNTCNDRMAEEIKKLTG 624
Query: 112 GIVLEIHEENTIIMYRGKNYAQP 134
G++L ++E I+ YRG ++ P
Sbjct: 625 GVLLSRNKE-FIVFYRGNDFIAP 646
Score = 38.9 bits (89), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 57 KCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLE 116
+ K + VG G+ Q ++ ++H WK + +K+ + + +K L TGG+V+
Sbjct: 371 RMKERIKVGPGGVTQDIVESIHRKWKVDEVVKMRFEGPPSLNMKRTHDLLEDRTGGVVI- 429
Query: 117 IHEENTIIMYRGKNY 131
++++YRG NY
Sbjct: 430 WRSGRSVVLYRGMNY 444
>gi|326497411|dbj|BAK05795.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 1070
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 105/182 (57%), Gaps = 5/182 (2%)
Query: 2 TAEEKILYKLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKNY 61
T + + +L +A ++E+ + L+++E S E+++ EE + K+G + K +
Sbjct: 609 TVAQNMETRLSQALTEKEKAEKLLEELEKASRSSKAETREVISEEERYMLRKVGLQMKPF 668
Query: 62 VPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVL---EIH 118
+ +GRRG++ G I NMHLHWK + +K+I K S E+V A L +GGI++ +
Sbjct: 669 LLLGRRGVFDGTIENMHLHWKYRELVKIICKEHSMEDVTYAARTLEAESGGILVAVERVS 728
Query: 119 EENTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLR 178
+ + IIMYRGKNY +P + + P+ L++K AL +S +++K ++ L + ++ LR
Sbjct: 729 KGHAIIMYRGKNYQRPSS--LRPKSLLNKKDALKRSVELQRRKSLKLHVLNLSKNIDYLR 786
Query: 179 AQ 180
Q
Sbjct: 787 GQ 788
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 51/95 (53%), Gaps = 2/95 (2%)
Query: 41 EILTPEEHFYFLK-MGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEV 99
E+ P + L+ +G + + + VG+ G+ +G++ +H W+ + +K+ SA +
Sbjct: 139 ELTLPRDELRRLQGVGIRLRKRLKVGKPGVTEGIVNGIHERWRNAELVKIRCDDISAMNM 198
Query: 100 KEIAAELARLTGGIVLEIHEENTIIMYRGKNYAQP 134
+ L R TGG+V+ +TII+YRG NY P
Sbjct: 199 RRTHEVLERKTGGLVI-WRSGSTIILYRGTNYKYP 232
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 64 VGRRGIYQGVILNMHLHWKKHQTLKVIVKTFS-AEEVKEIAAELARLTGGIVLEIHEENT 122
+GR + GV + H+KKH V +K + V+++ +EL TG +++ E N
Sbjct: 963 IGRNNVITGVAKTIRTHFKKHPLAVVNIKNRADGTPVQQLISELEEATGSVLVS-REPNK 1021
Query: 123 IIMYRG 128
+I+YRG
Sbjct: 1022 VILYRG 1027
Score = 38.9 bits (89), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 47/96 (48%), Gaps = 8/96 (8%)
Query: 40 PEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVK----TFS 95
P LT E ++ R + +GR QG+ ++ W++ + K+ +K
Sbjct: 449 PPKLTDREMTILRRLARPLPYHYALGRSSNLQGLAASIIKLWERCEVAKIAMKRGPYCID 508
Query: 96 AEEVKEIAAELARLTGGIVLEIHEENTIIMYRGKNY 131
+E V E EL LTGG +L E +I++YRGK++
Sbjct: 509 SELVSE---ELKGLTGGTLLSRDNE-SIVLYRGKDF 540
>gi|255552728|ref|XP_002517407.1| conserved hypothetical protein [Ricinus communis]
gi|223543418|gb|EEF44949.1| conserved hypothetical protein [Ricinus communis]
Length = 1009
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/152 (37%), Positives = 92/152 (60%), Gaps = 12/152 (7%)
Query: 10 KLRKARKKEERIVEGLKKIEPKESSEMTHDPEI----LTPEEHFYFLKMGRKCKNYVPVG 65
+L A +K+ + V+ L +IE +SEM+ PEI +T EE + K+G K K ++ +G
Sbjct: 545 RLSMALEKKAKAVKLLAEIE---NSEMSQQPEIDKEGITDEERYMLRKVGLKMKPFLLIG 601
Query: 66 RRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEEN---T 122
RRG++ G I NMHLHWK + +K+I K S V E+A L +GGI++ + +
Sbjct: 602 RRGVFDGTIENMHLHWKYRELVKIICKERSLNAVHEVAQSLEAESGGILVAVERVSKGYA 661
Query: 123 IIMYRGKNYAQPPTEIMSPRITLSRKKALDKS 154
I++YRGKNY +P ++ P LS+++A+ +S
Sbjct: 662 IVVYRGKNYQRP--ALLRPPTLLSKREAMKRS 691
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 43 LTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEI 102
L+ EE ++G K + VG+ GI +G++ +H W++ + +K++ + +K
Sbjct: 158 LSEEELRRLRRIGIAEKRKLKVGKAGITEGIVNGIHERWRRSEVVKIVCEDLCRMNMKRT 217
Query: 103 AAELARLTGGIVLEIHEENTIIMYRGKNYAQP 134
L R TGG+V+ + I++YRG NY P
Sbjct: 218 HDLLERKTGGLVV-WRAGSKIVLYRGVNYIYP 248
Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 48/91 (52%), Gaps = 2/91 (2%)
Query: 42 ILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKE 101
ILT +E ++GR + +GR QG+ ++ W+K + K+ VK E
Sbjct: 375 ILTNDEMTTLKRLGRPLPCHFVLGRNRKLQGLAASIIKLWEKCEIAKIAVKRGVQNTNSE 434
Query: 102 IAAE-LARLTGGIVLEIHEENTIIMYRGKNY 131
+ AE L RLTGG +L E I++YRGK++
Sbjct: 435 MMAEELKRLTGGTLLSRDRE-FIVLYRGKDF 464
Score = 44.7 bits (104), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Query: 28 IEPKESSEMTHDPEILTPEEHFYFLKMGRKCKN--YVPVGRRGIYQGVILNMHLHWKKHQ 85
I E +EM L+ + K K KN + VGR I GV + H+KK+
Sbjct: 846 ISANEDNEMQSSTICLSNRDRLMLRKQALKMKNRPVLAVGRSNIVTGVAKTIKAHFKKYP 905
Query: 86 TLKVIVKTFS-AEEVKEIAAELARLTGGIVLEIHEENTIIMYRG 128
V VK + V+E+ +L + TGG+++ E + +I+YRG
Sbjct: 906 LAIVNVKGRAKGTSVQEVVFQLEQATGGVLVS-QEPSKVILYRG 948
>gi|30678323|ref|NP_186786.2| CRM family member 2 [Arabidopsis thaliana]
gi|22531018|gb|AAM97013.1| unknown protein [Arabidopsis thaliana]
gi|37202002|gb|AAQ89616.1| At3g01370 [Arabidopsis thaliana]
gi|332640136|gb|AEE73657.1| CRM family member 2 [Arabidopsis thaliana]
Length = 1011
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 61/180 (33%), Positives = 104/180 (57%), Gaps = 6/180 (3%)
Query: 5 EKILYKLRKARKKEERIVEGLKKIEPKESSEMTH-DPEILTPEEHFYFLKMGRKCKNYVP 63
EK KL A +K+ + L +E +ES +++ D E +T +E + K+G K K ++
Sbjct: 540 EKTSMKLSMALEKKANAEKVLADLENRESPQLSDIDKEGITNDEKYMLRKIGLKMKPFLL 599
Query: 64 VGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLE---IHEE 120
+GRRG++ G I NMHLHWK + +K+I +S E ++A L +GGI++ + +
Sbjct: 600 LGRRGVFDGTIENMHLHWKYRELVKIICNEYSIEAAHKVAEILEAESGGILVAVEMVSKG 659
Query: 121 NTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLRAQ 180
II+YRGKNY +P + + P+ LS+++AL +S +++K ++ KL +E L Q
Sbjct: 660 YAIIVYRGKNYERP--QCLRPQTLLSKREALKRSVEAQRRKSLKLHVLKLSNNIEELNRQ 717
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 43 LTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEI 102
L P E +G + + +G+ GI +G++ +H W+ + +K+ + S +K
Sbjct: 166 LPPAELRRLRTVGIRLTKKLKIGKAGITEGIVNGIHERWRTTEVVKIFCEDISRMNMKRT 225
Query: 103 AAELARLTGGIVLEIHEENTIIMYRGKNYAQP 134
L TGG+V+ + I++YRG NY P
Sbjct: 226 HDVLETKTGGLVI-WRSGSKILLYRGVNYQYP 256
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 48/90 (53%), Gaps = 2/90 (2%)
Query: 43 LTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEI 102
LT +E ++GR + +GR QG+ + + W+K + K+ VK E+
Sbjct: 378 LTDDEMTTIRRLGRPLPCHFALGRNRNLQGLAVAIVKLWEKCELAKIAVKRGVQNTNSEL 437
Query: 103 AAE-LARLTGGIVLEIHEENTIIMYRGKNY 131
AE L LTGG ++ +++ I++YRGK++
Sbjct: 438 MAEELKWLTGGTLIS-RDKDFIVLYRGKDF 466
>gi|356573408|ref|XP_003554853.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Glycine max]
Length = 1027
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 62/194 (31%), Positives = 111/194 (57%), Gaps = 9/194 (4%)
Query: 15 RKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVI 74
+ K E+++ L+ E + E+ + E +T EE + ++G K ++ +GRRG++ G +
Sbjct: 517 KAKAEKLLSELENAESPQEEEI--NKEGITEEEKYMLRRIGLKMSPFLLLGRRGVFDGTV 574
Query: 75 LNMHLHWKKHQTLKVIV-KTFSAEEVKEIAAELARLTGGIVLEIHEEN---TIIMYRGKN 130
NMHLHWK + +K+I K S E+V++IA L +GGI++ + N II+YRGKN
Sbjct: 575 ENMHLHWKYRELVKIICNKQMSLEDVQQIAQTLEAESGGILIAVERVNKSYAIIVYRGKN 634
Query: 131 YAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLRAQ-AETRSENRS 189
Y++P + + PR L++K+AL +S ++K ++ KL++ + L+ Q A+ N
Sbjct: 635 YSRPAS--LRPRTLLNKKQALKRSIEAQRCESLKLHVLKLDRNINELKHQMAKDMEANSK 692
Query: 190 DAAEDVQNTELDKP 203
+ D Q ++P
Sbjct: 693 QTSVDNQQAIQEQP 706
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 64 VGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEENTI 123
VG+ G+ +G++ +H W+ + ++++ + S +K L R TGG+V+ + I
Sbjct: 151 VGKAGLTEGIVNGIHERWRSFEVVRIVCEDLSRFNMKRTHDLLERKTGGLVV-WRSGSKI 209
Query: 124 IMYRGKNYAQP 134
I+YRG +Y P
Sbjct: 210 ILYRGTDYKYP 220
Score = 37.7 bits (86), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 46/86 (53%), Gaps = 4/86 (4%)
Query: 52 LKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFS-AEEVKEIAAELARLT 110
LKM K + + VG+ I G+ + H++KH V VK + ++E+ ++L + T
Sbjct: 912 LKM--KKRPVLSVGKSNIVTGLAKAIKAHFQKHPLAIVNVKGRAKGTSIQEVVSKLEQET 969
Query: 111 GGIVLEIHEENTIIMYRGKNYAQPPT 136
G +++ E N +I+YRG + P+
Sbjct: 970 GAVLVS-QELNKVILYRGWGEGEKPS 994
Score = 37.4 bits (85), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 57/119 (47%), Gaps = 5/119 (4%)
Query: 43 LTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEI 102
LT +E ++G+ + +GR G+ + W++ + +K+ +K E+
Sbjct: 349 LTDDEMTTMRRLGKHLPCHFALGRNKKLHGLAAAIIKLWERCEIVKIAIKRGVLNTNGEL 408
Query: 103 AAE-LARLTGGIVLEIHEENTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGL 160
AE + LTGG ++ ++ I+ YRGK++ PT + S I R + K K R+ L
Sbjct: 409 MAEEIKYLTGGTLIA-RDKEFIVFYRGKDFL--PTAVSSA-IEQRRSIGMYKLKTRNSL 463
>gi|326507446|dbj|BAK03116.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 775
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 63/167 (37%), Positives = 96/167 (57%), Gaps = 6/167 (3%)
Query: 9 YKLRKARKKEERIVEGLKKIEPKES-SEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRR 67
+KL A+ K R + L KIE + + D E++T EE F ++G K K Y+PVG R
Sbjct: 555 HKLSIAQAKIHRAGKLLSKIEASMVLANPSDDREMITAEERSVFRRIGLKMKAYLPVGIR 614
Query: 68 GIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIH---EENTII 124
G++ GVI NMHLHWK + +K+I K + V+E A L +GGI++ I + + +I
Sbjct: 615 GVFDGVIENMHLHWKHREVVKLITKQKTLAFVEETARLLEYESGGILVAIERVPKGHALI 674
Query: 125 MYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLE 171
YRGKNY +P + PR L++ KAL ++ A+ ++I +LE
Sbjct: 675 FYRGKNYRRPIN--IRPRNLLTKAKALKRAVAMQRHEALSQHIDQLE 719
Score = 43.9 bits (102), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 54 MGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGI 113
MG K+ + V + G+ Q + +H W+K + +++ A ++K + R TGG+
Sbjct: 188 MGMTLKDRITVPKAGVTQAITEKIHDAWRKSELVRLKFHEDHANDMKTAHELVERRTGGL 247
Query: 114 VLEIHEENTIIMYRGKNYAQP 134
++ + +++YRG NY +P
Sbjct: 248 II-WRAGSVMVVYRGSNYTRP 267
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 4/99 (4%)
Query: 43 LTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVK-TFSAEEVKE 101
LT E K+ R + +GR +QG+ + W+K +K+ VK K
Sbjct: 379 LTNSELTNLRKLARNLPCHFALGRNRNHQGLAAAIVKLWEKSLVVKIAVKRGIQNTNNKL 438
Query: 102 IAAELARLTGGIVLEIHEENTIIMYRGKNYAQPPTEIMS 140
++ E+ LTGG +L + + I++YRGK++ PT + +
Sbjct: 439 MSDEIKNLTGGTLL-LRNKYYIVIYRGKDFL--PTSVAA 474
>gi|6692258|gb|AAF24608.1|AC010870_1 unknown protein [Arabidopsis thaliana]
Length = 1020
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 61/180 (33%), Positives = 104/180 (57%), Gaps = 6/180 (3%)
Query: 5 EKILYKLRKARKKEERIVEGLKKIEPKESSEMTH-DPEILTPEEHFYFLKMGRKCKNYVP 63
EK KL A +K+ + L +E +ES +++ D E +T +E + K+G K K ++
Sbjct: 549 EKTSMKLSMALEKKANAEKVLADLENRESPQLSDIDKEGITNDEKYMLRKIGLKMKPFLL 608
Query: 64 VGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLE---IHEE 120
+GRRG++ G I NMHLHWK + +K+I +S E ++A L +GGI++ + +
Sbjct: 609 LGRRGVFDGTIENMHLHWKYRELVKIICNEYSIEAAHKVAEILEAESGGILVAVEMVSKG 668
Query: 121 NTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLRAQ 180
II+YRGKNY +P + + P+ LS+++AL +S +++K ++ KL +E L Q
Sbjct: 669 YAIIVYRGKNYERP--QCLRPQTLLSKREALKRSVEAQRRKSLKLHVLKLSNNIEELNRQ 726
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 43 LTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEI 102
L P E +G + + +G+ GI +G++ +H W+ + +K+ + S +K
Sbjct: 166 LPPAELRRLRTVGIRLTKKLKIGKAGITEGIVNGIHERWRTTEVVKIFCEDISRMNMKRT 225
Query: 103 AAELARLTGGIVLEIHEENTIIMYRGKNYAQP 134
L TGG+V+ + I++YRG NY P
Sbjct: 226 HDVLETKTGGLVI-WRSGSKILLYRGVNYQYP 256
Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 50/99 (50%), Gaps = 11/99 (11%)
Query: 43 LTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKT--------F 94
LT +E ++GR + +GR QG+ + + W+K + K+ VK
Sbjct: 378 LTDDEMTTIRRLGRPLPCHFALGRNRNLQGLAVAIVKLWEKCELAKIAVKRGVQNTNSEL 437
Query: 95 SAEEVKEIAAELA--RLTGGIVLEIHEENTIIMYRGKNY 131
AEE+K + L LTGG ++ +++ I++YRGK++
Sbjct: 438 MAEELKVVGLLLVIKWLTGGTLIS-RDKDFIVLYRGKDF 475
>gi|242076096|ref|XP_002447984.1| hypothetical protein SORBIDRAFT_06g019250 [Sorghum bicolor]
gi|241939167|gb|EES12312.1| hypothetical protein SORBIDRAFT_06g019250 [Sorghum bicolor]
Length = 800
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 102/169 (60%), Gaps = 8/169 (4%)
Query: 15 RKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVI 74
+++ E+++E L+K P +E+ E ++ +E + K+G K K ++ +GRRG++ G I
Sbjct: 608 KERAEKLLEELEKASPLSKAEVR---ETISEDERYMLRKVGLKMKQFLLLGRRGVFDGTI 664
Query: 75 LNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVL---EIHEENTIIMYRGKNY 131
NMHLHWK + +K+I K E+V+ A L +GGI++ ++ + + II+YRGKNY
Sbjct: 665 ENMHLHWKYRELVKIICKEHRLEDVEYAARTLEAESGGILVAVEKVSKGHAIIVYRGKNY 724
Query: 132 AQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLRAQ 180
+P + P+ LS++ AL +S +++K ++ KL + ++ L+ Q
Sbjct: 725 QRPSK--LRPKTLLSKRDALKRSVENQRCKSLKVHVLKLSKNIDYLKDQ 771
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 51/95 (53%), Gaps = 2/95 (2%)
Query: 41 EILTPEEHFYFLK-MGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEV 99
E+ P + L+ +G + + + VG+ GI +G++ +H W+ + +K+ + A +
Sbjct: 142 ELALPRDELRRLQGIGIRVRKRLKVGKAGITEGIVNGIHERWRNAEVVKLRCEDVWAMNM 201
Query: 100 KEIAAELARLTGGIVLEIHEENTIIMYRGKNYAQP 134
+ L R TGG+V+ +TII+YRG NY P
Sbjct: 202 RRTHEILERKTGGLVI-WRSGSTIILYRGTNYKYP 235
Score = 38.9 bits (89), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 47/100 (47%), Gaps = 2/100 (2%)
Query: 40 PEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEV 99
P LT E ++ + +GR QG+ +M W++ + K+ +K +
Sbjct: 435 PPKLTDREMTILRRLAHPLPFHYALGRSSNLQGLAASMIKLWERCEVAKIALKRDAHNTD 494
Query: 100 KE-IAAELARLTGGIVLEIHEENTIIMYRGKNYAQPPTEI 138
E I E+ LTGG +L ++ +I+ YRGK++ P +
Sbjct: 495 SELITEEIKDLTGGTLLS-RDKESIVFYRGKDFLPPAVSL 533
>gi|296087726|emb|CBI34982.3| unnamed protein product [Vitis vinifera]
Length = 1028
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 74/253 (29%), Positives = 137/253 (54%), Gaps = 17/253 (6%)
Query: 5 EKILYKLRKARKKEERIVEGLKKIEPKESSEMTHDPEI----LTPEEHFYFLKMGRKCKN 60
E+ KL A +K+ER + L ++E +++ PEI +T EE + K+G + K
Sbjct: 567 ERTNIKLSMALEKKERAEKLLAELE---EAQIPQQPEIDKEGITEEERYMLRKVGLRMKP 623
Query: 61 YVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEE 120
++ +GRRGI+ G + NMHLHWK + +K+I S E++ +A L +GGI++ +
Sbjct: 624 FLLLGRRGIFDGTVENMHLHWKYRELVKIISNGRSIEDIHGVARTLEAESGGILVAVERV 683
Query: 121 N---TIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELL 177
+ IIMYRGKNY +P + + P+ L++++AL +S ++K ++ +L + ++ L
Sbjct: 684 SKGYAIIMYRGKNYKRPAS--LRPQTLLNKREALKRSLEAQRRESLKLHVLRLTRNIDEL 741
Query: 178 RAQAETR---SENRSDAAEDVQNTELDKPDFGSIPSMMECSEN-DPTTESLMASDSEDLS 233
+ Q +R E S D L + +G+ ++ S+ D + +SL S ++
Sbjct: 742 KHQLVSRIKDKETNSKQLVDKSRLHLARERYGADVILIHSSDGMDSSRDSLQTSHNDKRI 801
Query: 234 DIFETDSETETEE 246
D F + +++T+E
Sbjct: 802 D-FPSMCDSDTDE 813
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 65/128 (50%), Gaps = 9/128 (7%)
Query: 8 LYKLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLK-MGRKCKNYVPVGR 66
++LRK K+E+++V KE E+ PEE LK +G + + + VG+
Sbjct: 157 FHELRKEVKREKKLVR-------KEDERAPTLAELTLPEEELRRLKGIGIQIRKKLKVGK 209
Query: 67 RGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEENTIIMY 126
GI +G++ +H W++ + +K+ + +K L R TGG+V+ + II+Y
Sbjct: 210 AGITEGIVNGIHERWRRAEVVKIRCEDICKLNMKRTHDILERKTGGLVI-WRSGSYIILY 268
Query: 127 RGKNYAQP 134
RG NY P
Sbjct: 269 RGANYKYP 276
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 54/114 (47%), Gaps = 5/114 (4%)
Query: 43 LTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEI 102
LT +E ++GR + +GR QG+ +M W+K + K+ VK E+
Sbjct: 405 LTNDEMTVLRRLGRPLPCHFALGRNRKLQGLAASMIKLWEKCEIAKIAVKRGVQNTNSEM 464
Query: 103 AAE-LARLTGGIVLEIHEENTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSK 155
AE L LTGG +L + I+ YRGK++ P +S I RK + + K
Sbjct: 465 MAEELKNLTGGTLLS-RDREFIVFYRGKDFLPP---AVSSAIEARRKYGIHRGK 514
Score = 39.3 bits (90), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 4/99 (4%)
Query: 33 SSEMTHDPEILTPEEHFYFLKMGRKCKN--YVPVGRRGIYQGVILNMHLHWKKHQTLKVI 90
S+EM L+ E K + K + VGR I GV + H++KH V
Sbjct: 889 SNEMPFRAAPLSNRERLLLRKQALRMKKRPVIAVGRSNIVTGVAKTIKAHFQKHPLAIVN 948
Query: 91 VKTFS-AEEVKEIAAELARLTGGIVLEIHEENTIIMYRG 128
VK + V+E+ +L + TG +++ E + +I+YRG
Sbjct: 949 VKGRAKGTSVQEVIFKLEQATGAVLVS-QEPSKVILYRG 986
>gi|357128578|ref|XP_003565949.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Brachypodium distachyon]
Length = 782
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 62/174 (35%), Positives = 98/174 (56%), Gaps = 6/174 (3%)
Query: 9 YKLRKARKKEERIVEGLKKIEPKES-SEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRR 67
+KL A+ K R + L KIE + + D E++T EE F ++G K K Y+PVG R
Sbjct: 558 HKLSIAQAKIHRAGKLLSKIEASMILANPSDDREMITDEERSVFRRIGLKMKAYLPVGIR 617
Query: 68 GIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIH---EENTII 124
G++ GVI NMHLHWK + +K+I K + V E A L +GGI++ + + +I
Sbjct: 618 GVFDGVIENMHLHWKHREVVKLITKQKTLAFVNETARLLEYESGGILVAVERVPKGYALI 677
Query: 125 MYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLR 178
YRGKNY +P + PR L++ KAL ++ A+ ++I +LE ++ ++
Sbjct: 678 FYRGKNYRRPIN--IRPRNLLTKAKALKRAVAMQRHEALSQHIAQLESNMKQMK 729
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 54 MGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGI 113
MG ++ + V + G+ Q V +H W+K + +++ A ++K + R TGG+
Sbjct: 191 MGMTLRDRITVPKAGVTQAVTEKIHDAWRKSELVRLKFHEDLANDMKTAHELVERRTGGL 250
Query: 114 VLEIHEENTIIMYRGKNYAQP 134
++ + +++YRG NY +P
Sbjct: 251 II-WRAGSVMVVYRGNNYTRP 270
Score = 39.3 bits (90), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
Query: 43 LTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEI 102
LT E K+ R + +GR +QG+ + W+K +K+ VK E+
Sbjct: 382 LTNAELTNLRKLARSLPCHFALGRNRNHQGLASAIIKLWEKSLVVKIAVKRGIQNTNNEL 441
Query: 103 AA-ELARLTGGIVLEIHEENTIIMYRGKNY 131
+ E+ +LTGG +L + + I++YRGK++
Sbjct: 442 MSDEIKKLTGGTLL-LRNKYFIVIYRGKDF 470
>gi|225452572|ref|XP_002275511.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Vitis vinifera]
Length = 1044
Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 74/253 (29%), Positives = 137/253 (54%), Gaps = 17/253 (6%)
Query: 5 EKILYKLRKARKKEERIVEGLKKIEPKESSEMTHDPEI----LTPEEHFYFLKMGRKCKN 60
E+ KL A +K+ER + L ++E +++ PEI +T EE + K+G + K
Sbjct: 567 ERTNIKLSMALEKKERAEKLLAELE---EAQIPQQPEIDKEGITEEERYMLRKVGLRMKP 623
Query: 61 YVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEE 120
++ +GRRGI+ G + NMHLHWK + +K+I S E++ +A L +GGI++ +
Sbjct: 624 FLLLGRRGIFDGTVENMHLHWKYRELVKIISNGRSIEDIHGVARTLEAESGGILVAVERV 683
Query: 121 N---TIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELL 177
+ IIMYRGKNY +P + + P+ L++++AL +S ++K ++ +L + ++ L
Sbjct: 684 SKGYAIIMYRGKNYKRPAS--LRPQTLLNKREALKRSLEAQRRESLKLHVLRLTRNIDEL 741
Query: 178 RAQAETR---SENRSDAAEDVQNTELDKPDFGSIPSMMECSEN-DPTTESLMASDSEDLS 233
+ Q +R E S D L + +G+ ++ S+ D + +SL S ++
Sbjct: 742 KHQLVSRIKDKETNSKQLVDKSRLHLARERYGADVILIHSSDGMDSSRDSLQTSHNDKRI 801
Query: 234 DIFETDSETETEE 246
D F + +++T+E
Sbjct: 802 D-FPSMCDSDTDE 813
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 65/128 (50%), Gaps = 9/128 (7%)
Query: 8 LYKLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLK-MGRKCKNYVPVGR 66
++LRK K+E+++V KE E+ PEE LK +G + + + VG+
Sbjct: 157 FHELRKEVKREKKLVR-------KEDERAPTLAELTLPEEELRRLKGIGIQIRKKLKVGK 209
Query: 67 RGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEENTIIMY 126
GI +G++ +H W++ + +K+ + +K L R TGG+V+ + II+Y
Sbjct: 210 AGITEGIVNGIHERWRRAEVVKIRCEDICKLNMKRTHDILERKTGGLVI-WRSGSYIILY 268
Query: 127 RGKNYAQP 134
RG NY P
Sbjct: 269 RGANYKYP 276
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 54/114 (47%), Gaps = 5/114 (4%)
Query: 43 LTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEI 102
LT +E ++GR + +GR QG+ +M W+K + K+ VK E+
Sbjct: 405 LTNDEMTVLRRLGRPLPCHFALGRNRKLQGLAASMIKLWEKCEIAKIAVKRGVQNTNSEM 464
Query: 103 AAE-LARLTGGIVLEIHEENTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSK 155
AE L LTGG +L + I+ YRGK++ P +S I RK + + K
Sbjct: 465 MAEELKNLTGGTLLS-RDREFIVFYRGKDFLPP---AVSSAIEARRKYGIHRGK 514
Score = 39.3 bits (90), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 4/99 (4%)
Query: 33 SSEMTHDPEILTPEEHFYFLKMGRKCKN--YVPVGRRGIYQGVILNMHLHWKKHQTLKVI 90
S+EM L+ E K + K + VGR I GV + H++KH V
Sbjct: 889 SNEMPFRAAPLSNRERLLLRKQALRMKKRPVIAVGRSNIVTGVAKTIKAHFQKHPLAIVN 948
Query: 91 VKTFS-AEEVKEIAAELARLTGGIVLEIHEENTIIMYRG 128
VK + V+E+ +L + TG +++ E + +I+YRG
Sbjct: 949 VKGRAKGTSVQEVIFKLEQATGAVLVS-QEPSKVILYRG 986
>gi|357167767|ref|XP_003581323.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Brachypodium distachyon]
Length = 1053
Score = 97.1 bits (240), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 59/186 (31%), Positives = 109/186 (58%), Gaps = 13/186 (6%)
Query: 2 TAEEKILYKLRKA---RKKEERIVEGLKKI-EPKESSEMTHDPEILTPEEHFYFLKMGRK 57
T + + +L +A ++K E+++E L+K +P ++ H ++ EE + K+G +
Sbjct: 595 TVAQNVEIRLSQAIVEKEKAEKLLEELEKASQPSKAETREH----ISDEERYMLRKIGLQ 650
Query: 58 CKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVL-- 115
K ++ +GRRG++ G I NMHLHWK + +K+I K S ++V+ A L +GGI++
Sbjct: 651 MKPFLLLGRRGVFDGTIENMHLHWKYRELVKIICKEHSMKDVEYAARTLESQSGGILVAV 710
Query: 116 -EIHEENTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQEL 174
+ + + IIMYRGKNY +P T + P+ L+++ AL +S +++K ++ L + +
Sbjct: 711 ERVSKGHAIIMYRGKNYHRPST--LRPKSLLNKRDALKRSVEYQRQKSLKLHVLNLSKNI 768
Query: 175 ELLRAQ 180
+ LR Q
Sbjct: 769 DYLRGQ 774
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 51/95 (53%), Gaps = 2/95 (2%)
Query: 41 EILTPEEHFYFLK-MGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEV 99
E+ P + L+ +G + + + VG+ G+ +G++ +H W+ + +K+ SA +
Sbjct: 137 ELTLPRDELRRLQGVGIRLRKRLKVGKPGVTEGIVNGIHERWRNVELVKIRCDDVSAMNM 196
Query: 100 KEIAAELARLTGGIVLEIHEENTIIMYRGKNYAQP 134
+ L R TGG+V+ +TII+YRG NY P
Sbjct: 197 RRTHEILERKTGGLVI-WRSGSTIILYRGTNYKYP 230
Score = 45.4 bits (106), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 8/103 (7%)
Query: 40 PEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVK----TFS 95
P LT E ++ R + +GR QG+ ++M W++ + K+ +K
Sbjct: 439 PSKLTDREMTILRRLARPLPYHYALGRSSNLQGLAVSMIKLWERCEVAKIAIKRGAYCID 498
Query: 96 AEEVKEIAAELARLTGGIVLEIHEENTIIMYRGKNYAQPPTEI 138
+E V E EL LTGG +L + +I+ YRGK++ P +
Sbjct: 499 SELVSE---ELKGLTGGTLLS-RDNKSIVFYRGKDFLSPAVSL 537
Score = 45.1 bits (105), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 58/142 (40%), Gaps = 30/142 (21%)
Query: 16 KKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKNYVP------------ 63
K + R+ + +S + D EI+ P + K+ KC Y+P
Sbjct: 870 KYQNRLSSAIACHSDNDSESYSRDVEIVKPCQALDEPKLDEKCTPYLPFRTAPLSNRERL 929
Query: 64 ----------------VGRRGIYQGVILNMHLHWKKHQTLKVIVKTFS-AEEVKEIAAEL 106
+GR + GV + H+KKH V +K + V+++ +EL
Sbjct: 930 MLRKQALKMKKRPVLAIGRNNVITGVAKTIQTHFKKHPLAIVNIKNRADGTPVQQLISEL 989
Query: 107 ARLTGGIVLEIHEENTIIMYRG 128
R TG +++ E N +I+YRG
Sbjct: 990 ERATGSVLVS-REPNKVILYRG 1010
>gi|297830494|ref|XP_002883129.1| EMB1865 [Arabidopsis lyrata subsp. lyrata]
gi|297328969|gb|EFH59388.1| EMB1865 [Arabidopsis lyrata subsp. lyrata]
Length = 846
Score = 97.1 bits (240), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 64/189 (33%), Positives = 112/189 (59%), Gaps = 6/189 (3%)
Query: 5 EKILYKLRKARKKEERIVEGLKKIEPKE-SSEMTHDPEILTPEEHFYFLKMGRKCKNYVP 63
++I +KL A+ K +R + L KIE + +D E+++ EE F K+G K K Y+P
Sbjct: 614 KRIQHKLNLAQSKFQRAEKLLSKIEASMIPNGPDYDQEVISEEERAMFRKVGLKMKAYLP 673
Query: 64 VGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEEN-- 121
+G RG++ GVI NMHLHWK + +K+I K + V++ A L +GG+++ I +
Sbjct: 674 LGIRGVFDGVIENMHLHWKHRELVKLISKQKNLAFVEDTARLLEYESGGVLVAIEKVPKG 733
Query: 122 -TIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLRAQ 180
+I YRGKNY +P + + PR L++ KAL +S A+ ++I +LE+ +E ++++
Sbjct: 734 FALIYYRGKNYRRPIS--LRPRNLLTKAKALKRSIAMQRHEALSQHISELERTIEQMQSE 791
Query: 181 AETRSENRS 189
+++ + S
Sbjct: 792 LTSKTPSYS 800
Score = 40.8 bits (94), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 57/112 (50%), Gaps = 7/112 (6%)
Query: 43 LTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVK-TFSAEEVKE 101
LT E K+G+ + +GR +QG+ + W+K K+ VK K
Sbjct: 442 LTNAEMTNLRKIGKTLPCHFALGRNRNHQGLAAAILQIWEKSLIAKIAVKRGIQNTNNKL 501
Query: 102 IAAELARLTGGIVLEIHEENTIIMYRGKNYAQPPTEIMSPRITLSRKKALDK 153
+A E+ LTGG++L + + I++YRGK++ P+ + + TL+ ++ L K
Sbjct: 502 MADEVKALTGGVLL-LRNKYYIVIYRGKDFL--PSSVAA---TLAERQELTK 547
>gi|297734212|emb|CBI15459.3| unnamed protein product [Vitis vinifera]
Length = 830
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 79/243 (32%), Positives = 128/243 (52%), Gaps = 23/243 (9%)
Query: 6 KILYKLRKARKKEERIVEGLKKIE----PKESSEMTHDPEILTPEEHFYFLKMGRKCKNY 61
+I +KL A+ K+ R L KIE P S+ D E +T EE F F ++G + K Y
Sbjct: 586 RIEHKLALAQAKKLRAERLLAKIEASMIPAGPSD---DQETITDEERFMFRRLGLRMKAY 642
Query: 62 VPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIH--- 118
+ +G RG++ GVI NMHLHWK + +K+I K + V++ A L +GGI++ I
Sbjct: 643 LLLGVRGVFDGVIENMHLHWKHRELVKLISKQKTLAFVEDTARLLEYESGGILVAIERVP 702
Query: 119 EENTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLR 178
+ +I YRGKNY +P + + PR L++ KAL +S A+ ++I +LE+ +E ++
Sbjct: 703 KGYALIYYRGKNYRRPVS--LRPRNLLTKAKALKRSVAMQRHEALSQHISELERTIEQMK 760
Query: 179 AQAETRSENRSDAAEDVQNTELDKPDFGSIPSMMECSENDPTTESLMASDSEDLSDIFET 238
+ +++ +D +TE G + E + S M SD++D+ DI
Sbjct: 761 MEI---GDSKDAEDKDSWSTE----GHGQFDQVSESEDE----ASGMDSDADDVEDIDWK 809
Query: 239 DSE 241
D E
Sbjct: 810 DDE 812
Score = 43.9 bits (102), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 53 KMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGG 112
++G + + V + GI Q V+ +H W+K + +++ A ++K + R TGG
Sbjct: 224 RLGMTIRERINVPKAGITQAVLGKIHEKWRKEELVRLKFHEALAHDMKTAHEIVERRTGG 283
Query: 113 IVLEIHEENTIIMYRGKNYAQPP 135
+V + ++++RG NY PP
Sbjct: 284 LV-TWRSGSVMVVFRGTNYEGPP 305
Score = 41.6 bits (96), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 60/121 (49%), Gaps = 7/121 (5%)
Query: 43 LTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVK-TFSAEEVKE 101
LT E K+ + + +GR +QG+ + W+K +K+ VK K
Sbjct: 412 LTNAEMTNLRKLAKSLPCHFALGRNRNHQGLAAAIIKLWEKSIVVKIAVKPGIQNTNNKL 471
Query: 102 IAAELARLTGGIVLEIHEENTIIMYRGKNYAQPPTEI---MSPRITLSRKKALDKSKYRD 158
+A E+ LTGG++L + + I++YRGK++ PT + +S R L++ + + K R
Sbjct: 472 MAEEIKNLTGGVLL-LRNKYYIVIYRGKDFL--PTSVAAALSEREELTKHIQVVEEKVRT 528
Query: 159 G 159
G
Sbjct: 529 G 529
>gi|47900539|gb|AAT39274.1| unknown protein [Oryza sativa Japonica Group]
gi|50878415|gb|AAT85189.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 798
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/170 (36%), Positives = 94/170 (55%), Gaps = 6/170 (3%)
Query: 9 YKLRKARKKEERIVEGLKKIEPKES-SEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRR 67
+KL A+ K R L KIE + + D E++T EE F ++G + K Y+PVG R
Sbjct: 563 HKLSIAQAKIHRAERLLSKIEASMVLANPSDDKEMITDEERSVFRRIGLRLKAYLPVGIR 622
Query: 68 GIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEEN---TII 124
G++ GVI NMHLHWK + +K+I K + V+E A L +GGI++ I +I
Sbjct: 623 GVFDGVIENMHLHWKHREVVKLITKQKTLPFVEETARLLEYESGGILVAIERVTKGYALI 682
Query: 125 MYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQEL 174
YRGKNY +P + PR L++ KAL ++ A+ ++I +LE +
Sbjct: 683 FYRGKNYRRPIN--IRPRNLLTKAKALKRAVAMQRHEALSQHIAELENNI 730
Score = 42.4 bits (98), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 53 KMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGG 112
++G ++ + V + G+ Q V +H W+K + +++ A ++K + R TGG
Sbjct: 195 RLGMTLRDRITVPKAGVTQAVTEKIHDAWRKSELVRLKFHEDLAHDMKTAHELVERRTGG 254
Query: 113 IVLEIHEENTIIMYRGKNYAQP 134
+++ + +++YRG NY +P
Sbjct: 255 LII-WRSGSVMVVYRGSNYKRP 275
Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 4/99 (4%)
Query: 43 LTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVK-TFSAEEVKE 101
LT E K+ R + +GR +QG+ + W+K +K+ VK K
Sbjct: 387 LTNAELTNLRKLARDLPCHFALGRNRNHQGLAAAIVKLWEKSLVVKIAVKRGIQNTNNKL 446
Query: 102 IAAELARLTGGIVLEIHEENTIIMYRGKNYAQPPTEIMS 140
++ E+ LTGG +L + + I++YRGK++ PT + +
Sbjct: 447 MSEEIKNLTGGTLL-LRNKYYIVIYRGKDFL--PTSVAA 482
>gi|218194999|gb|EEC77426.1| hypothetical protein OsI_16218 [Oryza sativa Indica Group]
Length = 818
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 103/175 (58%), Gaps = 20/175 (11%)
Query: 15 RKKEERIVEGLKKIEPKESSEMTHDP------EILTPEEHFYFLKMGRKCKNYVPVGRRG 68
++K E+++E L EM+ +P E+++ EE + K+G K K+++ +GRRG
Sbjct: 361 KEKTEKLIEEL---------EMSSEPSRAETREVISEEERYMLRKVGLKMKSFLLLGRRG 411
Query: 69 IYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVL---EIHEENTIIM 125
++ G + NMHLHWK + +K+I K + ++V+ A L +GGI++ + + + II+
Sbjct: 412 VFDGTVENMHLHWKYRELVKIICKEHNIKDVEYAARTLEAESGGILVAVERVSKAHAIII 471
Query: 126 YRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLRAQ 180
YRGKNY +P T + P+ L++K AL +S +++K ++ L + ++ L+ Q
Sbjct: 472 YRGKNYQRPST--LRPKSLLNKKDALKRSVEYQRYKSLKLHVLNLSKNIDYLKDQ 524
Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 4/99 (4%)
Query: 33 SSEMTHDPEILTPEEHFYFLKMGRKCKN--YVPVGRRGIYQGVILNMHLHWKKHQTLKVI 90
SS++ L+ E K K K + VGR + GV + H+KKH V
Sbjct: 677 SSQLPSAAAPLSNRERLMLRKQALKMKKRPVLAVGRNNVITGVAKAIKTHFKKHPLAIVN 736
Query: 91 VKTFS-AEEVKEIAAELARLTGGIVLEIHEENTIIMYRG 128
+K + ++++ +EL TG +++ E N +I+YRG
Sbjct: 737 IKNRADGTPIQQLISELEEATGSVLVS-REPNKVILYRG 774
>gi|125590660|gb|EAZ31010.1| hypothetical protein OsJ_15093 [Oryza sativa Japonica Group]
Length = 818
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 103/175 (58%), Gaps = 20/175 (11%)
Query: 15 RKKEERIVEGLKKIEPKESSEMTHDP------EILTPEEHFYFLKMGRKCKNYVPVGRRG 68
++K E+++E L EM+ +P E+++ EE + K+G K K+++ +GRRG
Sbjct: 361 KEKTEKLIEEL---------EMSSEPSRAETREVISEEERYMLRKVGLKMKSFLLLGRRG 411
Query: 69 IYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVL---EIHEENTIIM 125
++ G + NMHLHWK + +K+I K + ++V+ A L +GGI++ + + + II+
Sbjct: 412 VFDGTVENMHLHWKYRELVKIICKEHNIKDVEYAARTLEAESGGILVAVERVSKAHAIII 471
Query: 126 YRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLRAQ 180
YRGKNY +P T + P+ L++K AL +S +++K ++ L + ++ L+ Q
Sbjct: 472 YRGKNYQRPST--LRPKSLLNKKDALKRSVEYQRYKSLKLHVLNLSKNIDYLKDQ 524
Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 4/99 (4%)
Query: 33 SSEMTHDPEILTPEEHFYFLKMGRKCKN--YVPVGRRGIYQGVILNMHLHWKKHQTLKVI 90
SS++ L+ E K K K + VGR + GV + H+KKH V
Sbjct: 677 SSQLPSAAAPLSNRERLMLRKQALKMKKRPVLAVGRNNVITGVAKAIKTHFKKHPLAIVN 736
Query: 91 VKTFS-AEEVKEIAAELARLTGGIVLEIHEENTIIMYRG 128
+K + ++++ +EL TG +++ E N +I+YRG
Sbjct: 737 IKNRADGTPIQQLISELEEATGSVLVS-REPNKVILYRG 774
>gi|125553229|gb|EAY98938.1| hypothetical protein OsI_20893 [Oryza sativa Indica Group]
Length = 801
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 62/170 (36%), Positives = 95/170 (55%), Gaps = 6/170 (3%)
Query: 9 YKLRKARKKEERIVEGLKKIEPKES-SEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRR 67
+KL A+ K R L KIE + + D E++T EE F ++G + K Y+PVG R
Sbjct: 566 HKLSIAQAKIHRAERLLSKIEASMVLANPSDDKEMITDEERSVFRRIGLRLKAYLPVGIR 625
Query: 68 GIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIH---EENTII 124
G++ GVI NMHLHWK + +K+I K + V+E A L +GGI++ I + +I
Sbjct: 626 GVFDGVIENMHLHWKHREVVKLITKQKTLPFVEETARLLEYESGGILVAIERVPKGYALI 685
Query: 125 MYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQEL 174
YRGKNY +P + PR L++ KAL ++ A+ ++I +LE +
Sbjct: 686 FYRGKNYRRPIN--IRPRNLLTKAKALKRAVAMQRHEALSQHIAELENNI 733
Score = 42.4 bits (98), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 53 KMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGG 112
++G ++ + V + G+ Q V +H W+K + +++ A ++K + R TGG
Sbjct: 198 RLGMTLRDRITVPKAGVTQAVTEKIHDAWRKSELVRLKFHEDLAHDMKTAHELVERRTGG 257
Query: 113 IVLEIHEENTIIMYRGKNYAQP 134
+++ + +++YRG NY +P
Sbjct: 258 LII-WRSGSVMVVYRGSNYKRP 278
Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 4/99 (4%)
Query: 43 LTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVK-TFSAEEVKE 101
LT E K+ R + +GR +QG+ + W+K +K+ VK K
Sbjct: 390 LTNAELTNLRKLARDLPCHFALGRNRNHQGLAAAIVKLWEKSLVVKIAVKRGIQNTNNKL 449
Query: 102 IAAELARLTGGIVLEIHEENTIIMYRGKNYAQPPTEIMS 140
++ E+ LTGG +L + + I++YRGK++ PT + +
Sbjct: 450 MSEEIKNLTGGTLL-LRNKYYIVIYRGKDFL--PTSVAA 485
>gi|222632479|gb|EEE64611.1| hypothetical protein OsJ_19463 [Oryza sativa Japonica Group]
Length = 601
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 62/170 (36%), Positives = 94/170 (55%), Gaps = 6/170 (3%)
Query: 9 YKLRKARKKEERIVEGLKKIEPKES-SEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRR 67
+KL A+ K R L KIE + + D E++T EE F ++G + K Y+PVG R
Sbjct: 366 HKLSIAQAKIHRAERLLSKIEASMVLANPSDDKEMITDEERSVFRRIGLRLKAYLPVGIR 425
Query: 68 GIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEEN---TII 124
G++ GVI NMHLHWK + +K+I K + V+E A L +GGI++ I +I
Sbjct: 426 GVFDGVIENMHLHWKHREVVKLITKQKTLPFVEETARLLEYESGGILVAIERVTKGYALI 485
Query: 125 MYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQEL 174
YRGKNY +P + PR L++ KAL ++ A+ ++I +LE +
Sbjct: 486 FYRGKNYRRPIN--IRPRNLLTKAKALKRAVAMQRHEALSQHIAELENNI 533
Score = 38.9 bits (89), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 4/99 (4%)
Query: 43 LTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVK-TFSAEEVKE 101
LT E K+ R + +GR +QG+ + W+K +K+ VK K
Sbjct: 190 LTNAELTNLRKLARDLPCHFALGRNRNHQGLAAAIVKLWEKSLVVKIAVKRGIQNTNNKL 249
Query: 102 IAAELARLTGGIVLEIHEENTIIMYRGKNYAQPPTEIMS 140
++ E+ LTGG +L + + I++YRGK++ PT + +
Sbjct: 250 MSEEIKNLTGGTLL-LRNKYYIVIYRGKDFL--PTSVAA 285
Score = 38.1 bits (87), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 58 CKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEI 117
++ + V + G+ Q V +H W+K + +++ A ++K + R TGG+++
Sbjct: 3 LRDRITVPKAGVTQAVTEKIHDAWRKSELVRLKFHEDLAHDMKTAHELVERRTGGLII-W 61
Query: 118 HEENTIIMYRGKNYAQP 134
+ +++YRG NY +P
Sbjct: 62 RSGSVMVVYRGSNYKRP 78
>gi|21741981|emb|CAD41031.1| OSJNBa0060P14.12 [Oryza sativa Japonica Group]
gi|32492164|emb|CAE04823.1| OSJNBb0048E02.3 [Oryza sativa Japonica Group]
Length = 1012
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 103/175 (58%), Gaps = 20/175 (11%)
Query: 15 RKKEERIVEGLKKIEPKESSEMTHDP------EILTPEEHFYFLKMGRKCKNYVPVGRRG 68
++K E+++E L EM+ +P E+++ EE + K+G K K+++ +GRRG
Sbjct: 555 KEKTEKLIEEL---------EMSSEPSRAETREVISEEERYMLRKVGLKMKSFLLLGRRG 605
Query: 69 IYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVL---EIHEENTIIM 125
++ G + NMHLHWK + +K+I K + ++V+ A L +GGI++ + + + II+
Sbjct: 606 VFDGTVENMHLHWKYRELVKIICKEHNIKDVEYAARTLEAESGGILVAVERVSKAHAIII 665
Query: 126 YRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLRAQ 180
YRGKNY +P T + P+ L++K AL +S +++K ++ L + ++ L+ Q
Sbjct: 666 YRGKNYQRPST--LRPKSLLNKKDALKRSVEYQRYKSLKLHVLNLSKNIDYLKDQ 718
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 51/95 (53%), Gaps = 2/95 (2%)
Query: 41 EILTPEEHFYFLK-MGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEV 99
E+ P + L+ G + +N + VG+ G+ +G++ +H W+ + +K+ SA +
Sbjct: 138 ELALPRDELRRLQGAGIRLRNRLKVGKAGVTEGIVNGIHERWRNAELVKIRCDDVSAMNM 197
Query: 100 KEIAAELARLTGGIVLEIHEENTIIMYRGKNYAQP 134
K L R TGG+V+ +TII+YRG +Y P
Sbjct: 198 KRTHEILERKTGGLVI-WRSGSTIILYRGTDYKYP 231
Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 4/99 (4%)
Query: 33 SSEMTHDPEILTPEEHFYFLKMGRKCKN--YVPVGRRGIYQGVILNMHLHWKKHQTLKVI 90
SS++ L+ E K K K + VGR + GV + H+KKH V
Sbjct: 871 SSQLPSAAAPLSNRERLMLRKQALKMKKRPVLAVGRNNVITGVAKAIKTHFKKHPLAIVN 930
Query: 91 VKTFS-AEEVKEIAAELARLTGGIVLEIHEENTIIMYRG 128
+K + ++++ +EL TG +++ E N +I+YRG
Sbjct: 931 IKNRADGTPIQQLISELEEATGSVLVS-REPNKVILYRG 968
>gi|326521980|dbj|BAK04118.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 232
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 54/143 (37%), Positives = 86/143 (60%), Gaps = 5/143 (3%)
Query: 39 DPEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEE 98
D E++T EE F ++G K K Y+PVG RG++ GVI NMHLHWK + +K+I K +
Sbjct: 43 DREMITAEERSVFRRIGLKMKAYLPVGIRGVFDGVIENMHLHWKHREVVKLITKQKTLAF 102
Query: 99 VKEIAAELARLTGGIVLEIH---EENTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSK 155
V+E A L +GGI++ I + + +I YRGKNY +P + PR L++ KAL ++
Sbjct: 103 VEETARLLEYESGGILVAIERVPKGHALIFYRGKNYRRPIN--IRPRNLLTKAKALKRAV 160
Query: 156 YRDGLRAVKKYIPKLEQELELLR 178
A+ ++I +LE ++ ++
Sbjct: 161 AMQRHEALSQHIDQLEINMKQMK 183
>gi|297602873|ref|NP_001053020.2| Os04g0464800 [Oryza sativa Japonica Group]
gi|255675534|dbj|BAF14934.2| Os04g0464800 [Oryza sativa Japonica Group]
Length = 1042
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 94/155 (60%), Gaps = 11/155 (7%)
Query: 35 EMTHDP------EILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLK 88
EM+ +P E+++ EE + K+G K K+++ +GRRG++ G + NMHLHWK + +K
Sbjct: 566 EMSSEPSRAETREVISEEERYMLRKVGLKMKSFLLLGRRGVFDGTVENMHLHWKYRELVK 625
Query: 89 VIVKTFSAEEVKEIAAELARLTGGIVL---EIHEENTIIMYRGKNYAQPPTEIMSPRITL 145
+I K + ++V+ A L +GGI++ + + + II+YRGKNY +P T + P+ L
Sbjct: 626 IICKEHNIKDVEYAARTLEAESGGILVAVERVSKAHAIIIYRGKNYQRPST--LRPKSLL 683
Query: 146 SRKKALDKSKYRDGLRAVKKYIPKLEQELELLRAQ 180
++K AL +S +++K ++ L + ++ L+ Q
Sbjct: 684 NKKDALKRSVEYQRYKSLKLHVLNLSKNIDYLKDQ 718
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 51/95 (53%), Gaps = 2/95 (2%)
Query: 41 EILTPEEHFYFLK-MGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEV 99
E+ P + L+ G + +N + VG+ G+ +G++ +H W+ + +K+ SA +
Sbjct: 138 ELALPRDELRRLQGAGIRLRNRLKVGKAGVTEGIVNGIHERWRNAELVKIRCDDVSAMNM 197
Query: 100 KEIAAELARLTGGIVLEIHEENTIIMYRGKNYAQP 134
K L R TGG+V+ +TII+YRG +Y P
Sbjct: 198 KRTHEILERKTGGLVI-WRSGSTIILYRGTDYKYP 231
Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 4/100 (4%)
Query: 32 ESSEMTHDPEILTPEEHFYFLKMGRKCKN--YVPVGRRGIYQGVILNMHLHWKKHQTLKV 89
+SS++ L+ E K K K + VGR + GV + H+KKH V
Sbjct: 870 KSSQLPSAAAPLSNRERLMLRKQALKMKKRPVLAVGRNNVITGVAKAIKTHFKKHPLAIV 929
Query: 90 IVKTFS-AEEVKEIAAELARLTGGIVLEIHEENTIIMYRG 128
+K + ++++ +EL TG +++ E N +I+YRG
Sbjct: 930 NIKNRADGTPIQQLISELEEATGSVLVS-REPNKVILYRG 968
>gi|116310121|emb|CAH67138.1| OSIGBa0130P02.2 [Oryza sativa Indica Group]
Length = 1048
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 94/155 (60%), Gaps = 11/155 (7%)
Query: 35 EMTHDP------EILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLK 88
EM+ +P E+++ EE + K+G K K+++ +GRRG++ G + NMHLHWK + +K
Sbjct: 602 EMSSEPSRAETREVISEEERYMLRKVGLKMKSFLLLGRRGVFDGTVENMHLHWKYRELVK 661
Query: 89 VIVKTFSAEEVKEIAAELARLTGGIVL---EIHEENTIIMYRGKNYAQPPTEIMSPRITL 145
+I K + ++V+ A L +GGI++ + + + II+YRGKNY +P T + P+ L
Sbjct: 662 IICKEHNIKDVEYAARTLEAESGGILVAVERVSKAHAIIIYRGKNYQRPST--LRPKSLL 719
Query: 146 SRKKALDKSKYRDGLRAVKKYIPKLEQELELLRAQ 180
++K AL +S +++K ++ L + ++ L+ Q
Sbjct: 720 NKKDALKRSVEYQRYKSLKLHVLNLSKNIDYLKDQ 754
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 51/95 (53%), Gaps = 2/95 (2%)
Query: 41 EILTPEEHFYFLK-MGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEV 99
E+ P + L+ G + +N + VG+ G+ +G++ +H W+ + +K+ SA +
Sbjct: 138 ELALPRDELRRLQGAGIRLRNRLKVGKAGVTEGIVNGIHERWRNAELVKIRCDDVSAMNM 197
Query: 100 KEIAAELARLTGGIVLEIHEENTIIMYRGKNYAQP 134
K L R TGG+V+ +TII+YRG +Y P
Sbjct: 198 KRTHEILERKTGGLVI-WRSGSTIILYRGTDYKYP 231
Score = 42.4 bits (98), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 50/101 (49%), Gaps = 6/101 (5%)
Query: 40 PEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEV 99
P LT E ++ R + +GR QG+ +M W++ + KV +K AE +
Sbjct: 412 PPRLTDREMTILRRLARPLPYHYALGRSSNLQGLAASMIKLWERCEVAKVAIKR-GAENI 470
Query: 100 KE--IAAELARLTGGIVLEIHEENTIIMYRGKNYAQPPTEI 138
I+ +L LTGG +L E +I+ YRGK++ PT +
Sbjct: 471 DSDLISEKLKGLTGGTLLSRDNE-SIVFYRGKDFL--PTAV 508
Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 4/100 (4%)
Query: 32 ESSEMTHDPEILTPEEHFYFLKMGRKCKN--YVPVGRRGIYQGVILNMHLHWKKHQTLKV 89
+SS++ L+ E K K K + VGR + GV + H+KKH V
Sbjct: 906 KSSQLPSAAAPLSNRERLMLRKQALKMKKRPVLAVGRNNVITGVAKAIKTHFKKHPLAIV 965
Query: 90 IVKTFS-AEEVKEIAAELARLTGGIVLEIHEENTIIMYRG 128
+K + ++++ +EL TG +++ E N +I+YRG
Sbjct: 966 NIKNRADGTPIQQLISELEEATGSVLVS-REPNKVILYRG 1004
>gi|147815878|emb|CAN72582.1| hypothetical protein VITISV_035294 [Vitis vinifera]
Length = 850
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 65/183 (35%), Positives = 105/183 (57%), Gaps = 12/183 (6%)
Query: 5 EKILYKLRKARKKEERIVEGLKKIE----PKESSEMTHDPEILTPEEHFYFLKMGRKCKN 60
++I +KL A+ K+ R L KIE P S+ D E +T EE F F ++G + K
Sbjct: 585 KRIEHKLALAQAKKLRPERLLAKIEASMIPAGPSD---DQETITDEERFMFRRLGLRMKA 641
Query: 61 YVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIH-- 118
Y+ +G RG++ GVI NMHLHWK + +K+I K + V++ A L +GGI++ I
Sbjct: 642 YLLLGVRGVFDGVIENMHLHWKHRELVKLISKQKTLAFVEDTARLLEYESGGILVAIERV 701
Query: 119 -EENTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELL 177
+ +I YRGKNY +P + + PR L++ KAL +S A+ ++I +LE+ +E +
Sbjct: 702 PKGYALIYYRGKNYRRPVS--LRPRNLLTKAKALKRSVAMQRHEALSQHISELERTIEQM 759
Query: 178 RAQ 180
+ +
Sbjct: 760 KME 762
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 53 KMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGG 112
++G + + V + GI Q V+ +H W+K + +++ A ++K + R TGG
Sbjct: 224 RLGMTIRERINVPKAGITQAVLGKIHEKWRKEELVRLKFHEALAHDMKTAHEIVERRTGG 283
Query: 113 IVLEIHEENTIIMYRGKNYAQPP 135
+V + ++++RG NY PP
Sbjct: 284 LV-TWRSGSVMVVFRGTNYEGPP 305
Score = 41.6 bits (96), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 60/121 (49%), Gaps = 7/121 (5%)
Query: 43 LTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVK-TFSAEEVKE 101
LT E K+ + + +GR +QG+ + W+K +K+ VK K
Sbjct: 412 LTNAEMTNLRKLAKSLPCHFALGRNRNHQGLAAAIIKLWEKSIVVKIAVKPGIQNTNNKL 471
Query: 102 IAAELARLTGGIVLEIHEENTIIMYRGKNYAQPPTEI---MSPRITLSRKKALDKSKYRD 158
+A E+ LTGG++L + + I++YRGK++ PT + +S R L++ + + K R
Sbjct: 472 MAEEIKNLTGGVLL-LRNKYYIVIYRGKDFL--PTSVAAALSEREELTKHIQVVEEKVRT 528
Query: 159 G 159
G
Sbjct: 529 G 529
>gi|242078893|ref|XP_002444215.1| hypothetical protein SORBIDRAFT_07g015120 [Sorghum bicolor]
gi|241940565|gb|EES13710.1| hypothetical protein SORBIDRAFT_07g015120 [Sorghum bicolor]
Length = 728
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 60/150 (40%), Positives = 85/150 (56%), Gaps = 6/150 (4%)
Query: 9 YKLRKARKKEERIVEGLKKIEPKES-SEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRR 67
+KL KK ER + L K+ S SE + D E+LT EE F ++GRK V +GRR
Sbjct: 542 WKLSILNKKIERSNQALAKLRSSWSPSEQSADRELLTEEEKIMFRRIGRKMDGLVLLGRR 601
Query: 68 GIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEENT---II 124
GI+ GVI +H HWK + +KVI K A ++ A L TGGI++ + + T II
Sbjct: 602 GIFDGVIEEIHQHWKHKEVVKVITKQNQARQIMYTANLLEVETGGILIAVEKLTTSHAII 661
Query: 125 MYRGKNYAQPPTEIMSPRITLSRKKALDKS 154
+YRGKNY +P S L++++AL +S
Sbjct: 662 LYRGKNYRRPAKSSFSN--LLTKREALRRS 689
Score = 43.9 bits (102), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 43 LTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKT-FSAEEVKE 101
L EE Y K+ R + +GR QG+ + W+K K+ VK ++
Sbjct: 363 LADEELTYLRKLARPLPTHFALGRNTRLQGLAAAILKLWEKSLIAKIAVKVGIQNTNNEQ 422
Query: 102 IAAELARLTGGIVLEIHEENTIIMYRGKNY 131
+A L LTGG V+ + ++ +I+YRGK++
Sbjct: 423 MAWNLKHLTGGTVI-LRNKDFVILYRGKDF 451
>gi|449440945|ref|XP_004138244.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Cucumis sativus]
gi|449477054|ref|XP_004154915.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Cucumis sativus]
Length = 560
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 63/177 (35%), Positives = 100/177 (56%), Gaps = 6/177 (3%)
Query: 6 KILYKLRKARKKEERIVEGLKKIEPKES-SEMTHDPEILTPEEHFYFLKMGRKCKNYVPV 64
+I +KL A+ K+ R + L KIE S D E +T EE F ++G + Y+P+
Sbjct: 313 RIEHKLGVAQAKKLRAEKLLSKIEASMILSSPDDDQETITDEERVMFRRVGLRMTAYLPM 372
Query: 65 GRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIH---EEN 121
G RG++ GV+ NMHLHWK + +K+I K + V+E A L +GGI++ I +
Sbjct: 373 GIRGVFDGVVENMHLHWKHRELVKLISKQKTLAFVEETARLLEYESGGILVSIDRVPKGY 432
Query: 122 TIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLR 178
++ YRGKNY +P + PR L++ KAL +S A+ ++I +LEQ +E ++
Sbjct: 433 ALVYYRGKNYRRPIA--LRPRNLLTKAKALKRSVAMQRHEALSQHISELEQNIEQMK 487
Score = 44.7 bits (104), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 2/97 (2%)
Query: 43 LTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVK-TFSAEEVKE 101
LT E K+ + + +GR +QG+ + + W+K +K+ VK K
Sbjct: 141 LTNAEMTQMRKLAKSLPCHFALGRNRNHQGLAVAILKLWEKSLVVKIAVKRGIQNTNNKL 200
Query: 102 IAAELARLTGGIVLEIHEENTIIMYRGKNYAQPPTEI 138
+A E+ LTGG++L + + I++YRGK++ P +
Sbjct: 201 MAEEIGNLTGGVLL-LRNKYFIVIYRGKDFLPPSVAV 236
>gi|356529577|ref|XP_003533366.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Glycine max]
Length = 791
Score = 94.0 bits (232), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 62/177 (35%), Positives = 103/177 (58%), Gaps = 6/177 (3%)
Query: 6 KILYKLRKARKKEERIVEGLKKIEPKE-SSEMTHDPEILTPEEHFYFLKMGRKCKNYVPV 64
+I +K+ A+ K+ R + L KIE + +D E +T EE F K+G + K Y+P+
Sbjct: 551 QIEHKIFIAQTKKLRAEKLLAKIEASMVPAGPDYDQETITDEERVMFRKVGLRMKPYLPL 610
Query: 65 GRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEI---HEEN 121
G RG++ GV+ NMHLHWK + +K++ K + V++ A L +GGI++ I +E
Sbjct: 611 GIRGVFDGVVENMHLHWKHRELVKLMTKQKTLAFVEDTARLLEYESGGILVAIEKVSKEF 670
Query: 122 TIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLR 178
+I YRGKNY +P T + PR L++ KAL + A+ ++I +LE+ +E ++
Sbjct: 671 ALIYYRGKNYKRPIT--LRPRNLLTKGKALKRHVAMQRHEALSQHITELEKTIEQMK 725
Score = 41.2 bits (95), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 4/99 (4%)
Query: 43 LTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEI 102
LT E K+ + + VGR +QG+ + W+K K+ VK E+
Sbjct: 378 LTNAEMTNLRKLAKSLPCHFAVGRNRNHQGLACAILKLWEKSLVSKIAVKRGIQNTNNEL 437
Query: 103 AAE-LARLTGGIVLEIHEENTIIMYRGKNYAQPPTEIMS 140
AE L LTGG +L + + I++YRGK++ PT + +
Sbjct: 438 MAEELKMLTGGTLL-LRNKYFIVIYRGKDFV--PTSVAA 473
>gi|356527819|ref|XP_003532504.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Glycine max]
Length = 719
Score = 93.6 bits (231), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 63/175 (36%), Positives = 99/175 (56%), Gaps = 6/175 (3%)
Query: 5 EKILYKLRKARKKEERIVEGLKKIEPKE-SSEMTHDPEILTPEEHFYFLKMGRKCKNYVP 63
+KI KL A+ K R + L KIE +D E +T EE F +G + K Y+P
Sbjct: 483 KKIECKLAVAQAKRLRAEKLLAKIEASLLPVGPDYDKETITDEERVMFRSVGLRMKAYLP 542
Query: 64 VGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIH---EE 120
+G RG++ GVI NMHLHWK + +K+I K + V++ A L +GGI++ I +
Sbjct: 543 LGIRGVFDGVIENMHLHWKHRELVKLITKQKTLAFVEDTARLLEYESGGILVAIDKVPKG 602
Query: 121 NTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELE 175
++I YRGKNY +P T + PR L++ KAL +S A+ +++ +L +++E
Sbjct: 603 FSLIYYRGKNYRRPMT--LRPRNLLTKAKALQRSVVMQRHEALSQHVTELGEKIE 655
Score = 38.5 bits (88), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 4/99 (4%)
Query: 43 LTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEI 102
LT +E K+ + + +GR QG+ + W+K K+ VK E+
Sbjct: 311 LTNDELTNMRKLAKSLPCHFALGRNRNLQGLASAILRLWEKSLVAKIGVKRGIVNTNNEL 370
Query: 103 AA-ELARLTGGIVLEIHEENTIIMYRGKNYAQPPTEIMS 140
A EL LTGG +L + + I++YRGK++ PT + +
Sbjct: 371 MAQELKALTGGTLL-LRNKYYIVIYRGKDFV--PTSVAA 406
Score = 38.5 bits (88), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 44/94 (46%), Gaps = 1/94 (1%)
Query: 41 EILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVK 100
+ L EE +G K + + + G+ + V+ +H HW + +++ F A+ +K
Sbjct: 142 QTLVEEELRRLRTLGMSLKEKITIPKAGLTRAVLDRIHRHWSNCELVRLKFHEFLAQNMK 201
Query: 101 EIAAELARLTGGIVLEIHEENTIIMYRGKNYAQP 134
+ T G+V+ + + +YRGKNY P
Sbjct: 202 LAHQIVEHRTRGLVI-WRSGSYMWVYRGKNYQGP 234
>gi|413946392|gb|AFW79041.1| hypothetical protein ZEAMMB73_840751 [Zea mays]
Length = 197
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 97/178 (54%), Gaps = 16/178 (8%)
Query: 42 ILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKE 101
++T EE F ++G + K Y+P+G RG++ GVI NMHLHWK + +K+I K + V+E
Sbjct: 1 MITDEEKSVFRRIGLRLKAYLPLGVRGVFDGVIENMHLHWKHREVVKLISKQKTLSFVEE 60
Query: 102 IAAELARLTGGIVLEIH---EENTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRD 158
A LA +GGI++ I + +I YRGKNY +P + PR L++ KAL ++
Sbjct: 61 TARLLAYESGGILVAIERVPKGYALIFYRGKNYRRPIN--IRPRNLLTKAKALKRAVAMQ 118
Query: 159 GLRAVKKYIPKLEQELELLRA-----------QAETRSENRSDAAEDVQNTELDKPDF 205
A+ ++I +LE ++ ++ + + SEN D A + + D+ DF
Sbjct: 119 RHEALSQHIDQLESNIKQMKLDLGIEDYEEQDEDSSDSENEYDNAVTSVSYDEDQDDF 176
>gi|356522763|ref|XP_003530015.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Glycine max]
Length = 734
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 87/144 (60%), Gaps = 5/144 (3%)
Query: 38 HDPEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAE 97
+D E +T EE F K+G + K Y+P+G RG++ GV+ NMHLHWK + +K++ K +
Sbjct: 584 YDQETITDEERVMFRKVGLRMKPYLPLGIRGVFDGVVENMHLHWKHRELVKLMTKQKTVA 643
Query: 98 EVKEIAAELARLTGGIVLEI---HEENTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKS 154
V++ A L +GGI++ I +E +I YRGKNY +P T + PR L++ KAL +
Sbjct: 644 FVEDTARLLEYESGGILVAIEKVSKEFALIYYRGKNYKRPIT--LRPRNLLTKGKALKRH 701
Query: 155 KYRDGLRAVKKYIPKLEQELELLR 178
A+ ++I +LE+ +E ++
Sbjct: 702 VAMQRHEALSQHITELEKTIEQMK 725
Score = 39.7 bits (91), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 4/99 (4%)
Query: 43 LTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEI 102
LT E K+ + + +GR +QG+ + W+K K+ VK E+
Sbjct: 378 LTNAEMTNLRKLAKSLPCHFALGRNRNHQGLACAILKLWEKSLVAKIAVKRGIQNTNNEL 437
Query: 103 AAE-LARLTGGIVLEIHEENTIIMYRGKNYAQPPTEIMS 140
AE L LTGG +L + + I++YRGK++ PT + +
Sbjct: 438 MAEELKMLTGGTLL-LRNKYFIVIYRGKDFV--PTSVAA 473
>gi|154986387|gb|ABS89147.1| CFM2 alternative polyadenylation form 2 [Zea mays]
Length = 783
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 99/170 (58%), Gaps = 12/170 (7%)
Query: 15 RKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVI 74
+ K E+++E L+K P +E+ E ++ +E + K+G K K ++ +GRRG++ G I
Sbjct: 596 KAKAEKLIEELEKASPLSKAEVR---ETISEDERYMLRKVGLKMKQFLLLGRRGVFDGTI 652
Query: 75 LNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVL---EIHEENTIIMYRGKNY 131
NMHLHWK + +K+I K E+V+ A L +GGI++ ++ + + II+YRGKNY
Sbjct: 653 ENMHLHWKYRELVKIICKEHRLEDVEYAARTLEAESGGILVAVEKVSKGHAIIVYRGKNY 712
Query: 132 AQP----PTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELL 177
+P P ++S R L K++L+ + + L ++ Y P +E E+L
Sbjct: 713 KRPSKLRPKTLLSKRDAL--KRSLENQRCKVWLISLNFYDPFVEILFEIL 760
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 54 MGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGI 113
+G + + + VG+ GI +G++ +H W+ + +K+ + A ++ L R TGG+
Sbjct: 147 IGIRVRKRLKVGKAGITEGIVNGIHERWRNAEVVKLRCEDVWAMNMRRTHEILERKTGGL 206
Query: 114 VLEIHEENTIIMYRGKNYAQP 134
V+ +TII+YRG NY P
Sbjct: 207 VI-WRSGSTIILYRGTNYTYP 226
Score = 38.5 bits (88), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 47/100 (47%), Gaps = 2/100 (2%)
Query: 40 PEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEV 99
P LT E ++ + +GR QG+ +M W++ + K+ +K +
Sbjct: 423 PPKLTDREMTILRRLAHALPFHYALGRSSNLQGLAASMIKLWERCEVAKIALKRDAHNTD 482
Query: 100 KE-IAAELARLTGGIVLEIHEENTIIMYRGKNYAQPPTEI 138
E I E+ LTGG +L ++ +I+ YRGK++ P +
Sbjct: 483 SELITEEVKELTGGTLLS-RDKESIVFYRGKDFLPPAVSL 521
>gi|224059986|ref|XP_002300024.1| predicted protein [Populus trichocarpa]
gi|222847282|gb|EEE84829.1| predicted protein [Populus trichocarpa]
Length = 1012
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 89/156 (57%), Gaps = 9/156 (5%)
Query: 32 ESSEMTHDPE----ILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTL 87
E SEM+ PE +T EE + K+G K K ++ +G RG++ G I NMHLHWK + +
Sbjct: 568 EKSEMSQQPEKDKEGITEEERYMLRKIGLKMKPFLLMGERGVFDGTIENMHLHWKYRELV 627
Query: 88 KVIVKTFSAEEVKEIAAELARLTGGIVLEIHEEN---TIIMYRGKNYAQPPTEIMSPRIT 144
K+I K S + V+ +A L +GGI++ + + II+YRGKNY +P + P
Sbjct: 628 KIICKEKSFQAVQAVARTLEAESGGILVAVEGVSKGYAIILYRGKNYTRP--ACLRPPTL 685
Query: 145 LSRKKALDKSKYRDGLRAVKKYIPKLEQELELLRAQ 180
LS+++A+ +S ++K ++ +L ++ L+ Q
Sbjct: 686 LSKRQAMKRSLEAQRRESLKLHVLRLTSNIDHLKLQ 721
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 50/95 (52%), Gaps = 2/95 (2%)
Query: 41 EILTPEEHFYFLK-MGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEV 99
E+ P E L+ +G K + VG+ GI +G++ +H W++ + +K++ + +
Sbjct: 159 ELSLPNEELRRLRTIGIAEKRKLKVGKAGITEGIVNGIHERWRRSEVVKIVCEDLCRMNM 218
Query: 100 KEIAAELARLTGGIVLEIHEENTIIMYRGKNYAQP 134
K L R TGG+V+ + I++YRG +Y P
Sbjct: 219 KRTHDLLERKTGGLVV-WRVGSKIVLYRGADYKYP 252
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Query: 43 LTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEI 102
LT +E ++GR + +GR +QG+ ++ W+K + K+ VK E+
Sbjct: 381 LTNDEMTTLKRLGRPLPCHFALGRNTKHQGLAASIVKLWEKCEIAKIAVKRGVQNTNSEL 440
Query: 103 AA-ELARLTGGIVLEIHEENTIIMYRGKNY 131
A EL LTGG +L + I++YRGK++
Sbjct: 441 MAQELKWLTGGTLLS-RDREFIVLYRGKDF 469
Score = 40.4 bits (93), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 4/96 (4%)
Query: 42 ILTPEEHFYFLKMGRKCKN--YVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFS-AEE 98
L+ + K K KN + VGR I GV + H+++H V VK +
Sbjct: 866 CLSNRDRLLLRKQALKMKNRPVLAVGRSNIVTGVAKTIKAHFQRHPFAIVHVKGRAKGTS 925
Query: 99 VKEIAAELARLTGGIVLEIHEENTIIMYRGKNYAQP 134
V+E+ ++L TG +++ E + +I+YRG +P
Sbjct: 926 VQEVVSKLEEATGAVLVS-QEPSKVILYRGWGAGEP 960
>gi|224118814|ref|XP_002317913.1| predicted protein [Populus trichocarpa]
gi|222858586|gb|EEE96133.1| predicted protein [Populus trichocarpa]
Length = 806
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 97/171 (56%), Gaps = 6/171 (3%)
Query: 9 YKLRKARKKEERIVEGLKKIEPKE-SSEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRR 67
+KL A+ K+ R L KIE S D E ++ EE F ++G + K Y+P+G R
Sbjct: 576 HKLAIAQAKKLRAESLLSKIETTMVPSGPDFDQETISEEERVMFRRVGLRMKAYLPLGIR 635
Query: 68 GIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIH---EENTII 124
G++ GVI NMHLHWK + +K+I K + V++ A L +GG+++ I + +I
Sbjct: 636 GVFDGVIENMHLHWKHRELVKLISKQKTLAFVEDTAKLLEYESGGVLVAIERVPKGFALI 695
Query: 125 MYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELE 175
YRGKNY +P + + PR L++ KAL +S A+ ++I +LE+ +E
Sbjct: 696 YYRGKNYRRPIS--IRPRNLLTKAKALKRSVAMQRHEALSQHIFELEKNIE 744
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 53 KMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGG 112
+MG + + + + GI V+ N+H W+K + +++ A ++K + R TGG
Sbjct: 211 RMGMFIRERISIPKAGITNAVLENIHDRWRKEELVRLKFHEVLAHDMKTAHEIVERRTGG 270
Query: 113 IVLEIHEENTIIMYRGKNYAQPPTEI 138
+V+ + ++++RG NY PP+++
Sbjct: 271 LVI-WRAGSVMVVFRGTNYQGPPSKL 295
Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
Query: 43 LTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVK-TFSAEEVKE 101
LT E K+ + + +GR +QG+ + + W+K K+ VK K
Sbjct: 400 LTNAEMTNMRKLAKALPCHFALGRNRNHQGLAVAILKLWEKSLVAKIAVKRGIQNTNNKL 459
Query: 102 IAAELARLTGGIVLEIHEENTIIMYRGKNY 131
+A EL LTGG++L + + I+++RGK++
Sbjct: 460 MADELKMLTGGVLL-LRNKYYIVIFRGKDF 488
>gi|357500379|ref|XP_003620478.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago
truncatula]
gi|355495493|gb|AES76696.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago
truncatula]
Length = 820
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 65/181 (35%), Positives = 99/181 (54%), Gaps = 14/181 (7%)
Query: 6 KILYKLRKARKKEERIVEGLKKIEPKESSEMT-----HDPEILTPEEHFYFLKMGRKCKN 60
+I +K+ A K R L KIE S M +D E +T EE F ++G + K
Sbjct: 583 QIEHKISLAANKLHRAERLLAKIE----SSMVPVGPDYDQETITDEERVVFRQIGLRMKA 638
Query: 61 YVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEI--- 117
Y+ +G RG++ GVI NMHLHWK + +K++ K + V++ A L +GGI++ I
Sbjct: 639 YLQLGIRGVFDGVIENMHLHWKHRELVKLVTKQKNRAFVEDTARLLEYESGGILVAIEKV 698
Query: 118 HEENTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELL 177
+E II YRGKNY +P T + PR L++ KAL +S A+ +I +LE +E +
Sbjct: 699 SKEFAIIYYRGKNYKRPLT--LRPRNLLTKAKALKRSVAMLRHEALSNHITELETTIEQM 756
Query: 178 R 178
+
Sbjct: 757 K 757
Score = 38.5 bits (88), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 55 GRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIV 114
G + V V + G+ Q V+ +H W+K + +++ A+ ++ + R TGG+V
Sbjct: 225 GMHLRERVSVPKAGLTQEVMEKIHESWRKKELVRLKFHEELAKNMRIAHQIVERRTGGLV 284
Query: 115 LEIHEENTIIMYRGKNYAQP 134
+ +I+YRGKNY P
Sbjct: 285 -TWRAGSVMIVYRGKNYQGP 303
>gi|302768979|ref|XP_002967909.1| hypothetical protein SELMODRAFT_61058 [Selaginella moellendorffii]
gi|300164647|gb|EFJ31256.1| hypothetical protein SELMODRAFT_61058 [Selaginella moellendorffii]
Length = 557
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 89/148 (60%), Gaps = 8/148 (5%)
Query: 9 YKLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRRG 68
+ +RK K EE + + K ++P+E SE D E +T EE + ++G K K ++ +GRRG
Sbjct: 407 FAIRKKEKAEEALSKVEKLMKPREPSE---DRETITEEERYTLQRVGLKMKAFLLLGRRG 463
Query: 69 IYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIH---EENTIIM 125
+Y G+I NMHLHWK + +KV+ K ++++ A + +GGI++ I+ + +
Sbjct: 464 VYSGIIENMHLHWKYRELVKVVYKGKDRMDIEDTAKMIECESGGILIGIYPVSKGQVFLY 523
Query: 126 YRGKNYAQPPTEIMSPRITLSRKKALDK 153
YRGKNY +P E + P L+++KAL +
Sbjct: 524 YRGKNYRRP--EELRPHNLLTKRKALAR 549
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 50/92 (54%), Gaps = 1/92 (1%)
Query: 58 CKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEI 117
K + V + GI + V+ +H W+ + +K+ A ++++ EL + TGG+V+
Sbjct: 48 TKERIKVKKLGITRNVVQAIHQKWRTSEIVKLKCDQEVAMNMRKVHEELEKRTGGLVI-W 106
Query: 118 HEENTIIMYRGKNYAQPPTEIMSPRITLSRKK 149
+++YRGK+YA PP E P ++S+ K
Sbjct: 107 RAGTALVIYRGKDYAGPPKERWIPTESVSKPK 138
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 43 LTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVK-TFSAEEVKE 101
L+ +E +++ R+ + R QG+ M W+K + KV +K + + + +
Sbjct: 227 LSDKEFTNLVRLARQMPPQFVISRNKGLQGLAKAMVKLWEKTEITKVAIKQSVQSTDNAK 286
Query: 102 IAAELARLTGGIVLEIHEENTIIMYRGKNYAQPP 135
+A EL RLTG ++L E+ +I YRGK++ P
Sbjct: 287 MADELKRLTGCVLLG-REKTHMIFYRGKDFLPAP 319
>gi|147852955|emb|CAN81271.1| hypothetical protein VITISV_006146 [Vitis vinifera]
Length = 1399
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 93/157 (59%), Gaps = 12/157 (7%)
Query: 5 EKILYKLRKARKKEERIVEGLKKIEPKESSEMTHDPEI----LTPEEHFYFLKMGRKCKN 60
E+ KL A +K+ER + L ++E +++ PEI +T EE + K+G + K
Sbjct: 942 ERTSIKLSMALEKKERAEKLLAELE---EAQIPQQPEIDKEGITEEERYMLRKVGLRMKP 998
Query: 61 YVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEE 120
++ +GRRGI+ G + NMHLHWK + +K+I S E++ +A L +GGI++ +
Sbjct: 999 FLLLGRRGIFDGTVENMHLHWKYRELVKIISNGRSIEDIHGVARTLEAESGGILVAVERV 1058
Query: 121 N---TIIMYRGKNYAQPPTEIMSPRITLSRKKALDKS 154
+ IIMYRGKNY +P + + P+ L++++A+ +S
Sbjct: 1059 SKGYAIIMYRGKNYKRPAS--LRPQTLLNKREAMKRS 1093
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 65/128 (50%), Gaps = 9/128 (7%)
Query: 8 LYKLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLK-MGRKCKNYVPVGR 66
++LRK K+E+++V KE E+ PEE LK +G + + + VG+
Sbjct: 349 FHELRKEVKREKKLVR-------KEDERAPTLAELTLPEEELRRLKGIGIQIRKKLKVGK 401
Query: 67 RGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEENTIIMY 126
GI +G++ +H W++ + +K+ + +K L R TGG+V+ + II+Y
Sbjct: 402 AGITEGIVNGIHERWRRAEVVKIRCEDICKLNMKRTHDILERKTGGLVI-WRSGSYIILY 460
Query: 127 RGKNYAQP 134
RG NY P
Sbjct: 461 RGANYKYP 468
Score = 38.9 bits (89), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 4/99 (4%)
Query: 33 SSEMTHDPEILTPEEHFYFLKMGRKCKN--YVPVGRRGIYQGVILNMHLHWKKHQTLKVI 90
S+EM L+ E K + K + VGR I GV + H++KH V
Sbjct: 1244 SNEMPFRAAPLSNRERLLLRKQALRMKKRPVIAVGRSNIVTGVAKTIKAHFQKHPLAIVN 1303
Query: 91 VKTFS-AEEVKEIAAELARLTGGIVLEIHEENTIIMYRG 128
VK + V+E+ +L + TG +++ E + +I+YRG
Sbjct: 1304 VKGRAKGTSVQEVVFKLEQATGAVLVS-QEPSKVILYRG 1341
>gi|414870652|tpg|DAA49209.1| TPA: chloroplast RNA splicing1 [Zea mays]
Length = 715
Score = 90.5 bits (223), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 59/150 (39%), Positives = 84/150 (56%), Gaps = 6/150 (4%)
Query: 9 YKLRKARKKEERIVEGLKKIEPKES-SEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRR 67
+KL KK ER + L K+ S SE + D E LT EE F ++GRK V +GRR
Sbjct: 529 WKLSVLNKKIERSNQALAKLHSSWSPSEQSADREHLTEEEKIMFRRIGRKMDGLVLLGRR 588
Query: 68 GIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEENT---II 124
GI+ GVI +H HWK + +KVI K ++ A+ L TGGI++ + + T II
Sbjct: 589 GIFDGVIEEIHQHWKHKEVVKVITKQNQTRQIMYAASLLEVETGGILIAVEKLTTSHAII 648
Query: 125 MYRGKNYAQPPTEIMSPRITLSRKKALDKS 154
+YRGKNY +P S L++++AL +S
Sbjct: 649 LYRGKNYRRPAKSSFSN--LLTKREALRRS 676
Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 43 LTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKT-FSAEEVKE 101
L EE Y K+ R + +GR QG+ + W+K K+ VK ++
Sbjct: 352 LADEELTYLRKLARLLPTHFALGRNTRLQGLAAAILKLWEKSLIAKIAVKIGIQNTNNEQ 411
Query: 102 IAAELARLTGGIVLEIHEENTIIMYRGKNY 131
+A L LTGG V+ + ++ II+YRGK++
Sbjct: 412 MAWNLKHLTGGTVI-LRNKDFIILYRGKDF 440
>gi|162463484|ref|NP_001105008.1| chloroplastic group IIA intron splicing facilitator CRS1,
chloroplastic precursor [Zea mays]
gi|75173308|sp|Q9FYT6.1|CRS1_MAIZE RecName: Full=Chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic; AltName: Full=Chloroplastic RNA
splicing factor 1; AltName: Full=Protein CHLOROPLAST RNA
SPLICING 1; Flags: Precursor
gi|9837550|gb|AAG00595.1|AF290414_1 CRS1 [Zea mays]
Length = 715
Score = 90.5 bits (223), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 59/150 (39%), Positives = 84/150 (56%), Gaps = 6/150 (4%)
Query: 9 YKLRKARKKEERIVEGLKKIEPKES-SEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRR 67
+KL KK ER + L K+ S SE + D E LT EE F ++GRK V +GRR
Sbjct: 529 WKLSVLNKKIERSNQALAKLHSSWSPSEQSADREHLTEEEKIMFRRIGRKMDGLVLLGRR 588
Query: 68 GIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEENT---II 124
GI+ GVI +H HWK + +KVI K ++ A+ L TGGI++ + + T II
Sbjct: 589 GIFDGVIEEIHQHWKHKEVVKVITKQNQTRQIMYAASLLEVETGGILIAVEKLTTSHAII 648
Query: 125 MYRGKNYAQPPTEIMSPRITLSRKKALDKS 154
+YRGKNY +P S L++++AL +S
Sbjct: 649 LYRGKNYRRPAKSSFSN--LLTKREALRRS 676
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 43 LTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKT-FSAEEVKE 101
L EE Y K+ R + +GR QG+ + W+K K+ VK ++
Sbjct: 352 LADEELTYLRKLARLLPTHFALGRNTRLQGLAAAILKLWEKSLIAKIAVKIGIQNTNNEQ 411
Query: 102 IAAELARLTGGIVLEIHEENTIIMYRGKNY 131
+A L LTGG V+ + ++ II+YRGK++
Sbjct: 412 MAWNLKHLTGGTVI-LRNKDFIILYRGKDF 440
>gi|449459492|ref|XP_004147480.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Cucumis sativus]
Length = 1032
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/181 (33%), Positives = 102/181 (56%), Gaps = 6/181 (3%)
Query: 2 TAEEKILYKLRKARKKEERIVEGLKKIEPKESSEMTH-DPEILTPEEHFYFLKMGRKCKN 60
T+ K KL A +K+ + E L K+E +E + D E +T EE + K+G + K
Sbjct: 538 TSMRKTSIKLSIALEKKAKAEEFLAKLEEEEKLQQPEIDKEGITVEERYMLKKVGLRMKP 597
Query: 61 YVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEE 120
++ +GRRG++ G + NMHLHWK + +K+I S + V ++A L +GGI++ +
Sbjct: 598 FLLLGRRGVFDGTVENMHLHWKYRELVKIITNERSFKTVHDVARTLEAESGGILVAVERV 657
Query: 121 N---TIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELL 177
II++RGKNY +P + P L++K+AL +S +++K ++ KL Q +E L
Sbjct: 658 KRSFAIIIFRGKNYKRPSR--LRPESLLNKKEALKRSIEAQRRKSLKLHVLKLTQNVEEL 715
Query: 178 R 178
+
Sbjct: 716 K 716
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 43 LTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEI 102
LT EE +G + K + VG+ GI +G++ +H +W++ + +K+ + +K
Sbjct: 164 LTEEELGRLRTIGIRLKKKLNVGKAGITEGIVNTIHEYWRRSEVVKIACEDLCRLNMKRT 223
Query: 103 AAELARLTGGIVLEIHEENTIIMYRGKNYAQP 134
L R TGGIV+ + II+YRG NY P
Sbjct: 224 HDLLERKTGGIVV-WRSGSKIILYRGPNYIYP 254
>gi|356573410|ref|XP_003554854.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Glycine max]
Length = 1028
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 97/169 (57%), Gaps = 8/169 (4%)
Query: 15 RKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVI 74
+ K E+++E L E + E+ D E ++ EE + ++G K ++ +GRRG++ G +
Sbjct: 537 KAKAEKLLEKLINAESPQEQEI--DKEGISKEEKYMLRRIGLMMKPFLLLGRRGVFDGTV 594
Query: 75 LNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVL---EIHEENTIIMYRGKNY 131
NMHLHWK + +K+I S EEV +IA L +GGI++ + + II+YRGKNY
Sbjct: 595 ENMHLHWKYRELVKIICNG-SLEEVHQIALTLEAESGGILVAVERVRKGFAIIVYRGKNY 653
Query: 132 AQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLRAQ 180
+ P + P+ L++++AL +S ++K I L++E+ L+ Q
Sbjct: 654 SVP--VCLRPQTLLNKRQALKRSIEAQRRESLKLRILTLDKEINELKLQ 700
Score = 46.2 bits (108), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 74/164 (45%), Gaps = 10/164 (6%)
Query: 43 LTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVK-TFSAEEVKE 101
LT +E ++G+ + +GR QG+ + W++ + +K+ VK K
Sbjct: 369 LTDDEMTTLKRLGKPLPCHFALGRNRKLQGLAAAIIKLWERCEIVKIAVKRGVQNTSSKI 428
Query: 102 IAAELARLTGGIVLEIHEENTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLR 161
+A EL LTGGI+L + + YRGK+Y P + S I R + K K+ + L
Sbjct: 429 MAKELKHLTGGILLS-RDREFFVFYRGKDYL--PAAVSSA-IKKQRNIGMYKLKFGNSLS 484
Query: 162 AVKKYIPK-----LEQELELLRAQAETRSENRSDAAEDVQNTEL 200
A PK E++ + Q +T+ + A E ++ T +
Sbjct: 485 ATVTPNPKDGTIECNSEVKGMNFQKDTKQRMLTKAEEAIKRTSI 528
Score = 42.7 bits (99), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 59 KNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIH 118
K V + + GI + ++ +H WK+ + ++V + S ++++ L R TGG+V+
Sbjct: 165 KKKVRLAKAGITEQIVDVIHERWKRSEVVRVFCEELSRDDMRRTHDLLERKTGGLVV-WR 223
Query: 119 EENTIIMYRGKNYAQP 134
II+YRG +Y P
Sbjct: 224 SGTKIILYRGADYKYP 239
Score = 38.1 bits (87), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 43 LTPEEHFYFLKMGRKCKNYV-PVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFS-AEEVK 100
L+ +E K K K V +G+ I GV+ + H++KH V VK + V+
Sbjct: 866 LSTKERLLLRKQALKIKQPVLAIGKSNIVSGVVQTIKAHFEKHPLAVVNVKGRAKGTSVQ 925
Query: 101 EIAAELARLTGGIVLEIHEENTIIMYRG 128
E+ +L + TG +++ E + II+YRG
Sbjct: 926 ELVFKLEQETGALLVS-REPSNIILYRG 952
>gi|413946391|gb|AFW79040.1| hypothetical protein ZEAMMB73_840751 [Zea mays]
Length = 266
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 55/146 (37%), Positives = 86/146 (58%), Gaps = 10/146 (6%)
Query: 42 ILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKE 101
++T EE F ++G + K Y+P+G RG++ GVI NMHLHWK + +K+I K + V+E
Sbjct: 1 MITDEEKSVFRRIGLRLKAYLPLGVRGVFDGVIENMHLHWKHREVVKLISKQKTLSFVEE 60
Query: 102 IAAELARLTGGIVLEIH---EENTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRD 158
A LA +GGI++ I + +I YRGKNY +P + PR L++ KAL ++
Sbjct: 61 TARLLAYESGGILVAIERVPKGYALIFYRGKNYRRPIN--IRPRNLLTKAKALKRAVAMQ 118
Query: 159 GLRAVKKYIPKLE-----QELELLRA 179
A+ ++I +LE +L+LLR
Sbjct: 119 RHEALSQHIDQLESNIKQMKLDLLRT 144
>gi|449515235|ref|XP_004164655.1| PREDICTED: LOW QUALITY PROTEIN: chloroplastic group IIA intron
splicing facilitator CRS1, chloroplastic-like [Cucumis
sativus]
Length = 1053
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 84/143 (58%), Gaps = 5/143 (3%)
Query: 39 DPEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEE 98
D E +T EE + K+G + K ++ +GRRG++ G + NMHLHWK + +K+I S +
Sbjct: 597 DKEGITVEERYMLKKVGLRMKPFLLLGRRGVFDGTVENMHLHWKYRELVKIITNERSFKT 656
Query: 99 VKEIAAELARLTGGIVLEIHEEN---TIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSK 155
V ++A L +GGI++ + II++RGKNY +P + P L++K+AL +S
Sbjct: 657 VHDVARTLEAESGGILVAVERVKRSFAIIIFRGKNYKRPSR--LRPESLLNKKEALKRSI 714
Query: 156 YRDGLRAVKKYIPKLEQELELLR 178
+++K ++ KL Q +E L+
Sbjct: 715 EAQRRKSLKLHVLKLTQNVEELK 737
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Query: 43 LTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEI 102
LT EE +G + K + VG+ GI +G++ +H W++ + +K+ + +K
Sbjct: 184 LTEEELGRLRTIGIRLKKKLNVGKAGITEGIVNTIHEFWRRSEVVKIACEDLCRLNMKRT 243
Query: 103 AAELARLTGGIVLEIHEENTIIMYRGKNYAQP 134
L R TGGIV+ + II+YRG NY P
Sbjct: 244 HDLLERKTGGIVV-WRSGSKIILYRGPNYIYP 274
>gi|255582755|ref|XP_002532154.1| conserved hypothetical protein [Ricinus communis]
gi|223528164|gb|EEF30228.1| conserved hypothetical protein [Ricinus communis]
Length = 745
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/154 (37%), Positives = 88/154 (57%), Gaps = 6/154 (3%)
Query: 5 EKILYKLRKARKKEERIVEGLKKIEPKE-SSEMTHDPEILTPEEHFYFLKMGRKCKNYVP 63
++I +KL A+ K+ R L KIE S +D E +T EE F ++G + K Y+P
Sbjct: 581 KRIEHKLAVAQAKKLRAERLLAKIEVSMLPSGPDYDQETITDEERAVFRRIGLRMKAYLP 640
Query: 64 VGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIH---EE 120
+G RG++ GVI NMHLHWK + +K+I K + ++ A L +GGI++ I +
Sbjct: 641 LGIRGVFDGVIENMHLHWKHRELVKLISKQKTLAFAEDTARLLEYESGGILVAIERVPKG 700
Query: 121 NTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKS 154
+I YRGKNY +P + PR L++ KAL +S
Sbjct: 701 FALIYYRGKNYRRPIN--LRPRNLLTKAKALKRS 732
Score = 42.4 bits (98), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 50/99 (50%), Gaps = 4/99 (4%)
Query: 43 LTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVK-TFSAEEVKE 101
LT E K+ +K + +GR +QG+ + W+K K+ VK K
Sbjct: 409 LTNAEMTNLRKLAKKLPCHFALGRNRNHQGLASTILKVWEKSLVAKIAVKRGIQNTNNKL 468
Query: 102 IAAELARLTGGIVLEIHEENTIIMYRGKNYAQPPTEIMS 140
+A EL LTGG++L + + I++YRGK++ PT + +
Sbjct: 469 MADELKMLTGGVLL-LRNKYYIVIYRGKDFL--PTSVAA 504
Score = 40.8 bits (94), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 53 KMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGG 112
+MG + V V + G+ + V+ +H W+K++ +++ A ++K R TGG
Sbjct: 220 RMGMFLRERVNVPKAGLTKEVVEKIHDKWRKNELVRLKFHEVLAHDMKTAHEITERRTGG 279
Query: 113 IVLEIHEENTIIMYRGKNYAQPPTE 137
+V+ + +++YRG +Y PP++
Sbjct: 280 LVI-WRAGSVMVVYRGSSYEGPPSK 303
>gi|326492786|dbj|BAJ90249.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 730
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/143 (39%), Positives = 83/143 (58%), Gaps = 6/143 (4%)
Query: 16 KKEERIVEGLKKIEPKES-SEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVI 74
KK ER E L K+ + SE + D E+LT EE F K+G K +V +GRRGI+ GVI
Sbjct: 551 KKIERSNEALAKLHNSWNPSEQSADKELLTEEERMIFRKIGLKMDEHVLLGRRGIFDGVI 610
Query: 75 LNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVL---EIHEENTIIMYRGKNY 131
+H HWK + +KVI K A ++ + L TGG+++ ++ + II+YRGKNY
Sbjct: 611 EEIHQHWKHKEIVKVITKQNQAYQITYTSMLLEVETGGMLIATQKLTNSHAIILYRGKNY 670
Query: 132 AQPPTEIMSPRITLSRKKALDKS 154
+P SP L++++AL +S
Sbjct: 671 HRPTKS--SPSNLLTKREALRRS 691
Score = 42.4 bits (98), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 43 LTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKT-FSAEEVKE 101
L EE Y K+ R + +GR QG+ + W+K K+ VK ++
Sbjct: 366 LADEELTYLRKLARPLPTHFALGRNTRLQGLAAAVLKLWEKSLIAKIAVKVGIQNTNNEQ 425
Query: 102 IAAELARLTGGIVLEIHEENTIIMYRGKNY 131
+A L LTGG ++ + ++ +I+YRGK++
Sbjct: 426 MAWNLKHLTGGTII-LRNKDFVILYRGKDF 454
>gi|218201029|gb|EEC83456.1| hypothetical protein OsI_28955 [Oryza sativa Indica Group]
Length = 514
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 84/150 (56%), Gaps = 6/150 (4%)
Query: 9 YKLRKARKKEERIVEGLKKIEPKES-SEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRR 67
++L KK ER + L K+ S S+ D E+LT EE F K+G K +V +GRR
Sbjct: 320 WRLSMLTKKIERSNQVLAKLHSSWSPSKKDGDRELLTEEERRIFRKIGLKMDEHVLLGRR 379
Query: 68 GIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEENT---II 124
G+++GVI +H HWK + +KVI K A ++ + L TGG ++ I T II
Sbjct: 380 GVFEGVIEEIHQHWKHKEVVKVITKQNQANQITYTSMMLEVETGGTLIAIERFTTSHAII 439
Query: 125 MYRGKNYAQPPTEIMSPRITLSRKKALDKS 154
+YRGKNY +P +P L++++AL +S
Sbjct: 440 LYRGKNYRRPTKS--APSNLLTKREALQRS 467
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 43 LTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKT-FSAEEVKE 101
L EE Y K R + +GR QG+ + W+K KV VK ++
Sbjct: 143 LADEELTYLRKHARPLPTHFVLGRNTKLQGLAAAILKLWEKSLIAKVAVKVGIQNSNHEQ 202
Query: 102 IAAELARLTGGIVLEIHEENTIIMYRGKNY 131
+A L RLTGG V+ + ++ II+YRGK++
Sbjct: 203 MARNLKRLTGGTVI-LRNKDYIIIYRGKDF 231
>gi|449490080|ref|XP_004158502.1| PREDICTED: LOW QUALITY PROTEIN: chloroplastic group IIA intron
splicing facilitator CRS1, chloroplastic-like [Cucumis
sativus]
Length = 760
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 100/184 (54%), Gaps = 19/184 (10%)
Query: 6 KIL-YKLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKNYVPV 64
KIL +K+ K+ K+ ++ +++EP D E++T EE F KMG K + + +
Sbjct: 581 KILNFKVEKSTKELTKLNASWRRVEPDA------DQELITNEERICFRKMGLKMDSCLTL 634
Query: 65 GRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEI---HEEN 121
GRRG++ GVI +H HWK + +KVI + +V A L +GGI++ + E
Sbjct: 635 GRRGVFDGVIEGLHQHWKHREVVKVITMQRAFNQVNYTAKLLEAESGGILVSVDKLKEGY 694
Query: 122 TIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKY-------IPKLEQEL 174
II++RGKNY +P + + L+++KAL +S + ++K + I +L+ EL
Sbjct: 695 AIIIFRGKNYKRPLHSV--SKNLLTKRKALSRSLEMQRIGSLKFFANQRQQKIYELQHEL 752
Query: 175 ELLR 178
E +R
Sbjct: 753 EKVR 756
>gi|302761182|ref|XP_002964013.1| hypothetical protein SELMODRAFT_20706 [Selaginella moellendorffii]
gi|300167742|gb|EFJ34346.1| hypothetical protein SELMODRAFT_20706 [Selaginella moellendorffii]
Length = 555
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 88/148 (59%), Gaps = 13/148 (8%)
Query: 14 ARKKEERIVEGLKKIE----PKESSEMTHDPEILTPEEHFYFLKMGRKCKNYVPV-GRRG 68
A +K+E+ E L K+E P+E SE D E +T EE + ++G K K ++ + GRRG
Sbjct: 405 AVRKKEKAEEALSKVEKLMKPREPSE---DRETITEEERYTLQRVGLKMKAFLLLAGRRG 461
Query: 69 IYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIH---EENTIIM 125
+Y G+I NMHLHWK + +KV+ K ++++ A + +GGI++ I+ + +
Sbjct: 462 VYSGIIENMHLHWKYRELVKVVYKGKDRMDIEDTAKMIECESGGILIGIYPVSKGQVFLY 521
Query: 126 YRGKNYAQPPTEIMSPRITLSRKKALDK 153
YRGKNY +P E + P L+++KAL +
Sbjct: 522 YRGKNYRRP--EELRPHNLLTKRKALAR 547
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 58/110 (52%), Gaps = 2/110 (1%)
Query: 41 EILTPEEHFYFLK-MGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEV 99
E++ P+ L+ M K + V + GI + V+ +H W+ + +K+ A +
Sbjct: 31 ELVLPDAELRRLRTMIIHTKERIKVKKLGITRNVVQAIHQKWRTSEIVKLKCDQEVAMNM 90
Query: 100 KEIAAELARLTGGIVLEIHEENTIIMYRGKNYAQPPTEIMSPRITLSRKK 149
+++ EL + TGG+V+ +++YRGK+YA PP E P ++S+ K
Sbjct: 91 RKVHEELEKRTGGLVI-WRAGAALVIYRGKDYAGPPKERWIPTESVSKPK 139
Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 48/94 (51%), Gaps = 2/94 (2%)
Query: 43 LTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVK-TFSAEEVKE 101
L+ E +++ R+ + R QG+ M W+K + KV +K + + + +
Sbjct: 228 LSDREFTNLVRLARQMPPQFVISRNKGLQGLAKAMVKLWEKTEITKVAIKQSVQSTDNAK 287
Query: 102 IAAELARLTGGIVLEIHEENTIIMYRGKNYAQPP 135
+A EL RLTG ++L E+ +I YRGK++ P
Sbjct: 288 MADELKRLTGCVLLG-REKTHMIFYRGKDFLPAP 320
>gi|449441730|ref|XP_004138635.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Cucumis sativus]
Length = 760
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 100/184 (54%), Gaps = 19/184 (10%)
Query: 6 KIL-YKLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKNYVPV 64
KIL +K+ K+ K+ ++ +++EP D E++T EE F KMG K + + +
Sbjct: 581 KILNFKVEKSTKELTKLNASWRRVEPDA------DQELITNEERICFRKMGLKMDSCLTL 634
Query: 65 GRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEI---HEEN 121
GRRG++ GVI +H HWK + +KVI + +V A L +GGI++ + E
Sbjct: 635 GRRGVFDGVIEGLHQHWKHREVVKVITMQRAFNQVNYTAKLLEAESGGILVSVDKLKEGY 694
Query: 122 TIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKY-------IPKLEQEL 174
II++RGKNY +P + + L+++KAL +S + ++K + I +L+ EL
Sbjct: 695 AIIIFRGKNYKRPLHSV--SKNLLTKRKALSRSLEMQRIGSLKFFANQRQQKIYELQHEL 752
Query: 175 ELLR 178
E +R
Sbjct: 753 ENVR 756
>gi|357145812|ref|XP_003573775.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Brachypodium distachyon]
Length = 730
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 95/167 (56%), Gaps = 7/167 (4%)
Query: 16 KKEERIVEGLKKIEPKES-SEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVI 74
KK ER + L K+ + SE + D E+LT EE F K+G K +V +GRRG++ GVI
Sbjct: 552 KKIERSNQALAKLHSSWNPSEQSADKELLTEEERMIFRKIGLKMDEHVLLGRRGVFDGVI 611
Query: 75 LNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVL---EIHEENTIIMYRGKNY 131
+H HWK + +KVI K + ++ + L TGG+++ ++ + II+YRGKNY
Sbjct: 612 EEIHQHWKHKEIVKVITKQNQSYQITYTSMLLEVETGGVLIATQKLPHSHAIILYRGKNY 671
Query: 132 AQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLR 178
+P SP L++++AL +S ++K Y+ + ++ +E L+
Sbjct: 672 RRPEK---SPSNLLTKREALRRSVEVQRRGSMKYYVWERQKSIEELQ 715
Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 43 LTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKT-FSAEEVKE 101
L EE Y K+ R + +GR QG+ + W+K K+ VK ++
Sbjct: 367 LADEELTYLRKLARPLPAHFALGRNTKLQGLAAAILKLWEKSLVAKIAVKVGIENTNNEQ 426
Query: 102 IAAELARLTGGIVLEIHEENTIIMYRGKNY 131
+A L LTGG ++ + ++ II+YRGK++
Sbjct: 427 MAWNLKHLTGGTII-LRNKDFIILYRGKDF 455
>gi|413946390|gb|AFW79039.1| hypothetical protein ZEAMMB73_840751 [Zea mays]
Length = 132
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 47/116 (40%), Positives = 72/116 (62%), Gaps = 5/116 (4%)
Query: 42 ILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKE 101
++T EE F ++G + K Y+P+G RG++ GVI NMHLHWK + +K+I K + V+E
Sbjct: 1 MITDEEKSVFRRIGLRLKAYLPLGVRGVFDGVIENMHLHWKHREVVKLISKQKTLSFVEE 60
Query: 102 IAAELARLTGGIVLEIH---EENTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKS 154
A LA +GGI++ I + +I YRGKNY +P + PR L++ KAL ++
Sbjct: 61 TARLLAYESGGILVAIERVPKGYALIFYRGKNYRRPIN--IRPRNLLTKAKALKRA 114
>gi|167998334|ref|XP_001751873.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162696971|gb|EDQ83308.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 590
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 54/144 (37%), Positives = 87/144 (60%), Gaps = 15/144 (10%)
Query: 41 EILTPEEHFYFLKMG-----RKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVK--T 93
E ++ EE + F+K+G R + GRRG++ GV+ NMHLHWK + +KVI K
Sbjct: 145 EQISDEERYMFMKLGLRMRARLLMGKLSSGRRGVFDGVVENMHLHWKHRELVKVIFKGPI 204
Query: 94 FSAEEVKEIAAELARLTGGIVLEI---HEENTIIMYRGKNYAQPPTEIMSPRITLSRKKA 150
F AE+ +I L +GG+++ I + II YRGKNY Q P+E + PR LS+++A
Sbjct: 205 FEAEQTAKI---LEMESGGVLVGIVTTTKGQAIIFYRGKNY-QRPSE-LRPRHLLSKRQA 259
Query: 151 LDKSKYRDGLRAVKKYIPKLEQEL 174
++S R++++++ KLE+E+
Sbjct: 260 YERSLEMQRKRSLEQHMLKLEKEI 283
>gi|115476078|ref|NP_001061635.1| Os08g0360100 [Oryza sativa Japonica Group]
gi|75132343|sp|Q6YYA3.1|CRS1_ORYSJ RecName: Full=Chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic; AltName: Full=Chloroplastic RNA
splicing factor 1; AltName: Full=Protein CHLOROPLAST RNA
SPLICING 1; Flags: Precursor
gi|38637564|dbj|BAD03815.1| putative CRS1 [Oryza sativa Japonica Group]
gi|113623604|dbj|BAF23549.1| Os08g0360100 [Oryza sativa Japonica Group]
Length = 725
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 84/150 (56%), Gaps = 6/150 (4%)
Query: 9 YKLRKARKKEERIVEGLKKIEPKES-SEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRR 67
++L KK ER + L K+ S S+ D E+LT EE F K+G K +V +GRR
Sbjct: 531 WRLSMLTKKIERSNQVLAKLHSSWSPSKKDGDRELLTEEERRIFRKIGLKMDEHVLLGRR 590
Query: 68 GIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEENT---II 124
G+++GVI +H HWK + +KVI K A ++ + L TGG ++ I T II
Sbjct: 591 GVFEGVIEEIHQHWKHKEVVKVITKQNQASQITYTSMMLEVETGGTLIAIERFTTSHAII 650
Query: 125 MYRGKNYAQPPTEIMSPRITLSRKKALDKS 154
+YRGKNY +P +P L++++AL +S
Sbjct: 651 LYRGKNYRRPTKS--APSNLLTKREALQRS 678
Score = 43.9 bits (102), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 43 LTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKT-FSAEEVKE 101
L EE Y K R + +GR QG+ + W+K KV VK ++
Sbjct: 354 LADEELTYLRKHARPLPTHFVLGRNTKLQGLAAAILKLWEKSLIAKVAVKVGIQNTNHEQ 413
Query: 102 IAAELARLTGGIVLEIHEENTIIMYRGKNY 131
+A L RLTGG V+ + ++ II+YRGK++
Sbjct: 414 MARNLKRLTGGTVI-LRNKDYIIIYRGKDF 442
>gi|222640429|gb|EEE68561.1| hypothetical protein OsJ_27045 [Oryza sativa Japonica Group]
Length = 725
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 84/150 (56%), Gaps = 6/150 (4%)
Query: 9 YKLRKARKKEERIVEGLKKIEPKES-SEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRR 67
++L KK ER + L K+ S S+ D E+LT EE F K+G K +V +GRR
Sbjct: 531 WRLSMLTKKIERSNQVLAKLHSSWSPSKKDGDRELLTEEERRIFRKIGLKMDEHVLLGRR 590
Query: 68 GIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEENT---II 124
G+++GVI +H HWK + +KVI K A ++ + L TGG ++ I T II
Sbjct: 591 GVFEGVIEEIHQHWKHKEVVKVITKQNQASQITYTSMMLEVETGGTLIAIERFTTSHAII 650
Query: 125 MYRGKNYAQPPTEIMSPRITLSRKKALDKS 154
+YRGKNY +P +P L++++AL +S
Sbjct: 651 LYRGKNYRRPTKS--APSNLLTKREALQRS 678
Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 43 LTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKT-FSAEEVKE 101
L EE Y K R + +GR QG+ + W+K KV VK ++
Sbjct: 354 LADEELTYLRKHARPLPTHFVLGRNTKLQGLAAAILKLWEKSLIAKVAVKVGIQNTNHEQ 413
Query: 102 IAAELARLTGGIVLEIHEENTIIMYRGKNY 131
+A L RLTGG V+ + ++ II+YRGK++
Sbjct: 414 MARNLKRLTGGTVI-LRNKDYIIIYRGKDF 442
>gi|326499694|dbj|BAJ86158.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 730
Score = 84.0 bits (206), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 55/143 (38%), Positives = 82/143 (57%), Gaps = 6/143 (4%)
Query: 16 KKEERIVEGLKKIEPKES-SEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVI 74
KK ER E L K+ + SE + D E+LT EE F K+G K +V +GRRGI+ GVI
Sbjct: 551 KKIERSNEALAKLHNSWNPSEQSADKELLTEEERMIFRKIGLKMDEHVLLGRRGIFDGVI 610
Query: 75 LNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVL---EIHEENTIIMYRGKNY 131
+H HWK + +KVI K A ++ + L TGG+++ ++ + II+YRGKNY
Sbjct: 611 EEIHQHWKHKEIVKVITKQNQAYQITYTSMLLEVETGGMLIATQKLTNSHAIILYRGKNY 670
Query: 132 AQPPTEIMSPRITLSRKKALDKS 154
+P SP ++++AL +S
Sbjct: 671 HRPTKS--SPSNLRTKREALRRS 691
Score = 42.4 bits (98), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 43 LTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKT-FSAEEVKE 101
L EE Y K+ R + +GR QG+ + W+K K+ VK ++
Sbjct: 366 LADEELTYLRKLARPLPTHFALGRNTRLQGLAAAVLKLWEKSLIAKIAVKVGIQNTNNEQ 425
Query: 102 IAAELARLTGGIVLEIHEENTIIMYRGKNY 131
+A L LTGG ++ + ++ +I+YRGK++
Sbjct: 426 MAWNLKHLTGGTII-LRNKDFVILYRGKDF 454
>gi|302759655|ref|XP_002963250.1| hypothetical protein SELMODRAFT_404989 [Selaginella moellendorffii]
gi|300168518|gb|EFJ35121.1| hypothetical protein SELMODRAFT_404989 [Selaginella moellendorffii]
Length = 274
Score = 84.0 bits (206), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 69/106 (65%), Gaps = 4/106 (3%)
Query: 37 THDPEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSA 96
HDPE L+PE + R +++ +G+RG+++G I +++ HW H+TL++ + +
Sbjct: 94 VHDPEYLSPEFMTALKERNRCIDDFLTIGKRGVWEGFIRDIYSHWINHETLRIYCEGYPL 153
Query: 97 EEVKEIAAELARLTGGIVLEIHEEN-TIIMYRGKNYA---QPPTEI 138
+++ +A ++AR++G +V+ + EE + I+YRG+N++ QPP+ I
Sbjct: 154 RKLRPMAEKVARMSGAVVIAVTEETMSFILYRGRNFSHGYQPPSRI 199
>gi|296087258|emb|CBI33632.3| unnamed protein product [Vitis vinifera]
Length = 529
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 95/171 (55%), Gaps = 7/171 (4%)
Query: 39 DPEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEE 98
D E++T EE F K+G+K + + +GRRG++ GVI +H HWK + +KVI S +
Sbjct: 332 DKEMITEEERECFRKIGQKMDSSLLLGRRGVFDGVIEGLHQHWKHREIVKVITMQRSFSQ 391
Query: 99 VKEIAAELARLTGGIVLEI---HEENTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSK 155
V A L +GG+++ I E + II+YRGKNY +P + P+ L++++AL++S
Sbjct: 392 VLYTAKLLESESGGVLVSIDKLKEGHAIIIYRGKNYRRPIK--LVPKNLLTKREALNRSL 449
Query: 156 YRDGLRAVKKYIPKLEQELELLRAQAE--TRSENRSDAAEDVQNTELDKPD 204
+ ++K + + +Q + L+ + + R D E + T+ + PD
Sbjct: 450 EMQRIGSLKFFAYQRQQAISDLKLKLADLQKGSRRIDQRESEKFTKHEPPD 500
Score = 41.6 bits (96), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 48/90 (53%), Gaps = 2/90 (2%)
Query: 43 LTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKT-FSAEEVKE 101
LT +E Y K+ + +GR QG+ + W+K +K+ +K + ++
Sbjct: 123 LTDDELTYLRKLAYALPTHFVLGRNRKLQGLAAAILKLWEKSLIVKIAIKWGIPNTKNEQ 182
Query: 102 IAAELARLTGGIVLEIHEENTIIMYRGKNY 131
+A EL LTGG++L + + II+YRGK++
Sbjct: 183 MANELKCLTGGVLL-LRNKFFIILYRGKDF 211
>gi|225452088|ref|XP_002280704.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Vitis vinifera]
Length = 1184
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 111/208 (53%), Gaps = 9/208 (4%)
Query: 4 EEKILYKLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKNYVP 63
+E+ L+ L++ ++ +++ L ++ D E++T EE F K+G+K + +
Sbjct: 598 QERNLFILKRKIERSAKVLAKLNSAW--RPADHDADKEMITEEERECFRKIGQKMDSSLL 655
Query: 64 VGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEI---HEE 120
+GRRG++ GVI +H HWK + +KVI S +V A L +GG+++ I E
Sbjct: 656 LGRRGVFDGVIEGLHQHWKHREIVKVITMQRSFSQVLYTAKLLESESGGVLVSIDKLKEG 715
Query: 121 NTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLRAQ 180
+ II+YRGKNY +P + P+ L++++AL++S + ++K + + +Q + L+ +
Sbjct: 716 HAIIIYRGKNYRRPIK--LVPKNLLTKREALNRSLEMQRIGSLKFFAYQRQQAISDLKLK 773
Query: 181 AE--TRSENRSDAAEDVQNTELDKPDFG 206
+ R D E + T+ + PD
Sbjct: 774 LADLQKGSRRIDQRESEKFTKHEPPDVA 801
Score = 42.0 bits (97), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 48/90 (53%), Gaps = 2/90 (2%)
Query: 43 LTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKT-FSAEEVKE 101
LT +E Y K+ + +GR QG+ + W+K +K+ +K + ++
Sbjct: 422 LTDDELTYLRKLAYALPTHFVLGRNRKLQGLAAAILKLWEKSLIVKIAIKWGIPNTKNEQ 481
Query: 102 IAAELARLTGGIVLEIHEENTIIMYRGKNY 131
+A EL LTGG++L + + II+YRGK++
Sbjct: 482 MANELKCLTGGVLL-LRNKFFIILYRGKDF 510
>gi|297612106|ref|NP_001068192.2| Os11g0592400 [Oryza sativa Japonica Group]
gi|255680227|dbj|BAF28555.2| Os11g0592400, partial [Oryza sativa Japonica Group]
Length = 108
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/97 (43%), Positives = 66/97 (68%), Gaps = 6/97 (6%)
Query: 62 VPV-GRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEE 120
VP+ GRRG++ G I NMHLHWK + +K++VK S +VK+IA L +GGI++ + +
Sbjct: 4 VPLSGRRGVFDGTIENMHLHWKYRELVKILVKAKSFGDVKKIALSLEAESGGILVSVDKV 63
Query: 121 N---TIIMYRGKNYAQPPTEIMSPRITLSRKKALDKS 154
+ I+++RGK+YA+P + PR LS++KAL +S
Sbjct: 64 SKGYAIVVFRGKDYARPSK--LRPRNLLSKRKALARS 98
>gi|9755828|emb|CAC01859.1| putative protein [Arabidopsis thaliana]
Length = 718
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 83/149 (55%), Gaps = 4/149 (2%)
Query: 34 SEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKT 93
SE D EILT EE ++G K + + +GRRG++ GV+ +H HWK + KVI
Sbjct: 561 SEGDDDIEILTNEERECLRRIGLKMNSSLVLGRRGVFFGVMEGLHQHWKHREVAKVITMQ 620
Query: 94 FSAEEVKEIAAELARLTGGIVLEIH---EENTIIMYRGKNYAQPPTEIMSPRITLSRKKA 150
V A L + G+++ I E + I++YRGKNY +P +++M+ + L+++KA
Sbjct: 621 KLFSRVVYTAKALETESNGVLISIEKLKEGHAILIYRGKNYKRPSSKLMAQNL-LTKRKA 679
Query: 151 LDKSKYRDGLRAVKKYIPKLEQELELLRA 179
L +S L ++K + + E+ +E L+
Sbjct: 680 LQRSVVMQRLGSLKFFAYQRERAIEDLKV 708
Score = 38.9 bits (89), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Query: 43 LTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAE-EVKE 101
LT EE Y + + + +GR QG+ + W+K K+ +K + +E
Sbjct: 359 LTDEELTYLRNIAQPLPFHFVLGRNYGLQGLASAIVKLWEKCIIAKIAIKWGALNTNNEE 418
Query: 102 IAAELARLTGGIVLEIHEENTIIMYRGKNY 131
+A EL LTGG+++ + + I++YRGK++
Sbjct: 419 MADELRYLTGGVLI-LRNKYLIVLYRGKDF 447
>gi|186523322|ref|NP_197122.2| ortholog of maize chloroplast splicing factor CRS1 [Arabidopsis
thaliana]
gi|374095377|sp|Q9LF10.2|CRS1_ARATH RecName: Full=Chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic; AltName: Full=Chloroplastic RNA
splicing factor 1; AltName: Full=Protein CHLOROPLAST RNA
SPLICING 1; Flags: Precursor
gi|332004875|gb|AED92258.1| ortholog of maize chloroplast splicing factor CRS1 [Arabidopsis
thaliana]
Length = 720
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 83/149 (55%), Gaps = 4/149 (2%)
Query: 34 SEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKT 93
SE D EILT EE ++G K + + +GRRG++ GV+ +H HWK + KVI
Sbjct: 563 SEGDDDIEILTNEERECLRRIGLKMNSSLVLGRRGVFFGVMEGLHQHWKHREVAKVITMQ 622
Query: 94 FSAEEVKEIAAELARLTGGIVLEIH---EENTIIMYRGKNYAQPPTEIMSPRITLSRKKA 150
V A L + G+++ I E + I++YRGKNY +P +++M+ + L+++KA
Sbjct: 623 KLFSRVVYTAKALETESNGVLISIEKLKEGHAILIYRGKNYKRPSSKLMAQNL-LTKRKA 681
Query: 151 LDKSKYRDGLRAVKKYIPKLEQELELLRA 179
L +S L ++K + + E+ +E L+
Sbjct: 682 LQRSVVMQRLGSLKFFAYQRERAIEDLKV 710
Score = 38.9 bits (89), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Query: 43 LTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAE-EVKE 101
LT EE Y + + + +GR QG+ + W+K K+ +K + +E
Sbjct: 361 LTDEELTYLRNIAQPLPFHFVLGRNYGLQGLASAIVKLWEKCIIAKIAIKWGALNTNNEE 420
Query: 102 IAAELARLTGGIVLEIHEENTIIMYRGKNY 131
+A EL LTGG+++ + + I++YRGK++
Sbjct: 421 MADELRYLTGGVLI-LRNKYLIVLYRGKDF 449
>gi|356567264|ref|XP_003551841.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Glycine max]
Length = 712
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 61/189 (32%), Positives = 101/189 (53%), Gaps = 10/189 (5%)
Query: 4 EEKILYKLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKNYVP 63
E++ + L K K+ ER + L SE D EI+T EE F K+G K ++ +
Sbjct: 520 EQRRAFILNKKIKRSERELSKLN--AAWTPSEQDTDLEIMTDEERECFRKIGLKMQSSLL 577
Query: 64 VGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEI---HEE 120
+GRRGI+ GV+ +H HWK + +KVI +V A L +GGI++ + E
Sbjct: 578 LGRRGIFDGVLEGLHQHWKHREVVKVITMQKLFSQVINTAKVLETESGGILVSVDKLKEG 637
Query: 121 NTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQ---ELELL 177
+ II+YRGKNY +P ++ + L++++AL +S + ++K + + EQ ELE+
Sbjct: 638 HAIIIYRGKNYKRPSIKL--AKNLLTKREALRRSLEMQRIGSMKFFAHQREQAISELEVK 695
Query: 178 RAQAETRSE 186
A + + E
Sbjct: 696 LADLQQKKE 704
Score = 38.9 bits (89), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 2/95 (2%)
Query: 38 HDPEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAE 97
H LT E YF K+ + + +GR +G+ + W+K K+ +K
Sbjct: 339 HSSAKLTDYELTYFRKLAQSLPTHFVLGRNKGLKGLASAILKLWEKSLIAKIAIKYGIPN 398
Query: 98 EVKEIAA-ELARLTGGIVLEIHEENTIIMYRGKNY 131
E+ A EL LTGG++L + + I++YRG ++
Sbjct: 399 TDNEMMANELKCLTGGVLL-LRNKFYILLYRGNDF 432
>gi|224065312|ref|XP_002301769.1| predicted protein [Populus trichocarpa]
gi|222843495|gb|EEE81042.1| predicted protein [Populus trichocarpa]
Length = 117
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 54/121 (44%), Positives = 75/121 (61%), Gaps = 8/121 (6%)
Query: 154 SKYRDGLRAVKKYIPKLEQELELLRAQAETRSENRS-DAAEDVQNTELDKPDFGSIPSMM 212
SK RDGLRAVK+YIP L+Q+LELL+A+AE + NRS AA++ +D+ + ++
Sbjct: 2 SKCRDGLRAVKRYIPALQQDLELLQARAEGKVGNRSTGAAKETPEAGIDE----KLKEII 57
Query: 213 ECSENDP--TTESLMASDSEDLSDIFETDSETETEEKAELRPLYLDQFDKFPVQNDEEHE 270
+ E M EDLSDIF T +TET+E E RP YL++FDKF V+ + E E
Sbjct: 58 DRKERKALKIVVVWMTIRFEDLSDIFMTVPDTETDE-IEKRPPYLEEFDKFSVEANGEPE 116
Query: 271 D 271
+
Sbjct: 117 E 117
>gi|168014862|ref|XP_001759970.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162688720|gb|EDQ75095.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 512
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 73/124 (58%), Gaps = 12/124 (9%)
Query: 27 KIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQT 86
K++PK+ M E +T EE + K+G + K Y+ +GRR ++ GVI NMHLHWK Q
Sbjct: 332 KMKPKD---MHASKEDVTEEEMYTLRKIGLRMKPYLLLGRREVFSGVIENMHLHWKWRQL 388
Query: 87 LKVIVK--TFSAEE---VKEIAAELARLTGGIVLEIHE---ENTIIMYRGKNYAQPPTEI 138
+K+IVK F E ++ IA L +GG+++ I II+YRGKNY Q P +
Sbjct: 389 VKIIVKKSYFMYRERDDIENIARMLEIESGGVLVGICTIPVGEAIIVYRGKNY-QRPNDG 447
Query: 139 MSPR 142
+SP+
Sbjct: 448 ISPQ 451
>gi|255551422|ref|XP_002516757.1| conserved hypothetical protein [Ricinus communis]
gi|223544130|gb|EEF45655.1| conserved hypothetical protein [Ricinus communis]
Length = 742
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 69/119 (57%), Gaps = 6/119 (5%)
Query: 39 DPEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEE 98
D E++T EE K+G K ++ + +GRRG++ GVI +H HWK + +KVI +
Sbjct: 590 DLEMMTEEERECLRKIGLKMRSSLLLGRRGVFDGVIEGLHQHWKHREVVKVISLQRMFAQ 649
Query: 99 VKEIAAELARLTGGIVLEI---HEENTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKS 154
V A L TGGI++ I E + II+YRGKNY +P + + L+++KAL +S
Sbjct: 650 VIRTAKFLEAETGGILVSIDKLKEGHAIIIYRGKNYRRPQRLLNN---LLTKRKALCRS 705
Score = 37.7 bits (86), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
Query: 43 LTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKT-FSAEEVKE 101
L +E Y K+ + +GR QG+ + W++ K+ VK + ++
Sbjct: 381 LKDDELTYLRKLAYALPTHFVLGRNRRLQGLAAAILKLWERSLIAKIAVKWGIPNTDNEQ 440
Query: 102 IAAELARLTGGIVLEIHEENTIIMYRGKNY 131
+A EL LTGG++L + + II++RGK++
Sbjct: 441 MANELKHLTGGVLL-LRNKFFIILFRGKDF 469
>gi|224127512|ref|XP_002329296.1| predicted protein [Populus trichocarpa]
gi|222870750|gb|EEF07881.1| predicted protein [Populus trichocarpa]
Length = 687
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 70/130 (53%), Gaps = 4/130 (3%)
Query: 9 YKLRKARKKEERIVEGLKKIEPKE-SSEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRR 67
Y+LR + K E+ + L K+ S D I+T EE F K+G K + + +GRR
Sbjct: 493 YRLRILKSKIEKPAKDLSKLNSAWVPSPRDADQGIMTEEERECFRKIGLKLRGSLVLGRR 552
Query: 68 GIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEI---HEENTII 124
G+++GV+ +H HWK + +KVI +V A L + GI++ + E + II
Sbjct: 553 GVFEGVMEGLHQHWKHREVVKVITMQRVFSQVIHTATLLEAESDGILVSVDKLKEGHAII 612
Query: 125 MYRGKNYAQP 134
+YRGKNY +P
Sbjct: 613 IYRGKNYKRP 622
>gi|302781424|ref|XP_002972486.1| hypothetical protein SELMODRAFT_412905 [Selaginella moellendorffii]
gi|300159953|gb|EFJ26572.1| hypothetical protein SELMODRAFT_412905 [Selaginella moellendorffii]
Length = 795
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 66/108 (61%), Gaps = 14/108 (12%)
Query: 34 SEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKT 93
SE D E +T EE + F K+G + ++ +GRRG++ GVI NMHLHWK + +K+I+K
Sbjct: 593 SEHPRDRETITEEERYMFKKLGLRMDAFLLIGRRGVFDGVIENMHLHWKHRELVKLILK- 651
Query: 94 FSAEEVKEIAAELARL----TGGIV----LEIHEENT--IIMYRGKNY 131
E+ K IA E+A++ +GGI+ L++H E +IM K+Y
Sbjct: 652 ---EKDKAIALEVAKMLEIESGGILVGVALQLHIEKLEELIMKLRKDY 696
Score = 37.4 bits (85), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 43/78 (55%), Gaps = 4/78 (5%)
Query: 64 VGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAE-LARLTGGIVLEIHEENT 122
+GR QG+ + W+K + +K+ +K ++ AE L RLTGG++L ++
Sbjct: 414 LGRNRGLQGLASAILKLWQKSELVKIGLKRGVQNTRNQLMAEELERLTGGVLLS-RDKFF 472
Query: 123 IIMYRGKNYAQPPTEIMS 140
I +YRGK++ PT + +
Sbjct: 473 ITLYRGKDFL--PTSVAA 488
>gi|357454755|ref|XP_003597658.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago
truncatula]
gi|355486706|gb|AES67909.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago
truncatula]
Length = 880
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 71/131 (54%), Gaps = 17/131 (12%)
Query: 39 DPEILTPEEHFYFLKMGRKCKNYVPVG------------RRGIYQGVILNMHLHWKKHQT 86
D EI+T EE F KMG K ++ + +G RRG++ GV+ +H HWK +
Sbjct: 660 DLEIMTDEERECFRKMGLKMRSCLVLGKAISLHSTTSAGRRGVFDGVLEGLHQHWKHREV 719
Query: 87 LKVIVKTFSAEEVKEIAAELARLTGGIVL---EIHEENTIIMYRGKNYAQPPTEIMSPRI 143
KVI V + L R +GGI++ ++ E II+YRGKNY++P +I +
Sbjct: 720 AKVITMQRLISRVIYTSQFLERESGGILVSVDQLKEGYAIIIYRGKNYSRPSEKI--AKN 777
Query: 144 TLSRKKALDKS 154
L+++KAL +S
Sbjct: 778 LLTKRKALRRS 788
Score = 42.7 bits (99), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
Query: 38 HDPEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVK-TFSA 96
H LT E YF ++ + +GR QG+ + W K K+ +K
Sbjct: 444 HASAKLTDGELTYFRRISHPLPTHFVLGRNRGLQGLAAAILKLWHKSHIAKIAIKYGVQN 503
Query: 97 EEVKEIAAELARLTGGIVLEIHEENTIIMYRGKNY 131
+ + +A EL RLTGG++L + + I++YRGK++
Sbjct: 504 TDNETMANELKRLTGGVLL-LRNKFYILLYRGKDF 537
>gi|357521157|ref|XP_003630867.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago
truncatula]
gi|355524889|gb|AET05343.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago
truncatula]
Length = 676
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 68/117 (58%), Gaps = 5/117 (4%)
Query: 41 EILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVK 100
E +T EE F +G + K Y+ + G++ VI NMHLHW++ + +K+I K S V+
Sbjct: 523 ETITDEERVMFRVVGLRLKVYLQLDTLGVFDSVIENMHLHWRQRELVKLITKQKSLAFVE 582
Query: 101 EIAAELARLTGGIVLEIH---EENTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKS 154
E A+ L +GGI++ I + ++I YRGK+Y +P T + R L++ KAL S
Sbjct: 583 ETASLLEYKSGGILVAIDRLPKGFSLIYYRGKDYKRPIT--LRHRNLLTKTKALQHS 637
Score = 45.4 bits (106), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 51/99 (51%), Gaps = 4/99 (4%)
Query: 43 LTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEI 102
LT +EH LK+ + + +GR QG+ + W+K K+ VK E+
Sbjct: 322 LTNDEHTKMLKLAKALPCHFALGRNRNLQGLACAILKLWEKSLVAKIAVKLGVQNTNNEL 381
Query: 103 AA-ELARLTGGIVLEIHEENTIIMYRGKNYAQPPTEIMS 140
A EL +LTGG +L + + I++YRGK++ PT + +
Sbjct: 382 MALELKKLTGGTLL-LRNKYYILIYRGKDFI--PTSVAA 417
>gi|147838476|emb|CAN69859.1| hypothetical protein VITISV_037991 [Vitis vinifera]
Length = 371
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 78/145 (53%), Gaps = 7/145 (4%)
Query: 65 GRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEI---HEEN 121
GRRG++ GVI +H HWK + +KVI S +V A L +GG+++ I E +
Sbjct: 119 GRRGVFDGVIEGLHQHWKHREIVKVITMQRSFSQVLYTAKLLESESGGVLVSIDKLKEGH 178
Query: 122 TIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLRAQA 181
II+YRGKNY +P + P+ L++++AL++S + ++K + + +Q + L+ +
Sbjct: 179 AIIIYRGKNYRRPIK--LVPKNLLTKREALNRSLEMQRIGSLKFFAYQRQQAISDLKLKL 236
Query: 182 E--TRSENRSDAAEDVQNTELDKPD 204
+ R D E + T + PD
Sbjct: 237 ADLQKGSRRIDQRESEKFTXHEPPD 261
>gi|297807647|ref|XP_002871707.1| ATCRS1/CRS1 [Arabidopsis lyrata subsp. lyrata]
gi|297317544|gb|EFH47966.1| ATCRS1/CRS1 [Arabidopsis lyrata subsp. lyrata]
Length = 727
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 93/178 (52%), Gaps = 26/178 (14%)
Query: 18 EERIVEGLKKIEPKESSEMT-------HDPEILTPEEHFYFLKMGRKCKNYVPV-----G 65
EER E L++I K SS + H +L P Y L M N++ V G
Sbjct: 548 EER--ECLRRIGLKMSSSLVLGRSNRIHSCLLLIP----YPLAMRLIYINFIFVFVSFLG 601
Query: 66 RRGIYQGVILNMHLHWKKHQTLKVIV--KTFSAEEVKEIAAELARLTGGIVLEIH---EE 120
RRG++ G++ +H HWK + KVI K FS V A L + G+++ I E
Sbjct: 602 RRGVFVGIMEGLHQHWKHREVAKVITMQKIFS--RVVYTAKSLEAESNGVLISIEKLKEG 659
Query: 121 NTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLR 178
+ I++YRGKNY +P +++M+ + L+++KAL +S L ++K + + E+ +E L+
Sbjct: 660 HAILIYRGKNYKRPSSKLMAQNL-LTKRKALQRSVAMQRLGSLKFFAYQRERVIEDLK 716
Score = 38.9 bits (89), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Query: 43 LTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAE-EVKE 101
L+ EE Y + + + +GR QG+ + W+K K+ +K + +E
Sbjct: 334 LSDEELTYLRNIAQALPFHFVLGRNHGLQGLASAIVKLWEKCIIAKIAIKWGALNTNNEE 393
Query: 102 IAAELARLTGGIVLEIHEENTIIMYRGKNY 131
+A EL LTGG+++ + + II+YRGK++
Sbjct: 394 MADELKHLTGGVLI-LRNKYLIILYRGKDF 422
>gi|302754228|ref|XP_002960538.1| hypothetical protein SELMODRAFT_402884 [Selaginella moellendorffii]
gi|300171477|gb|EFJ38077.1| hypothetical protein SELMODRAFT_402884 [Selaginella moellendorffii]
Length = 961
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 47/75 (62%), Gaps = 11/75 (14%)
Query: 95 SAEEVKEIAAELARLTGGIVLEIHEENTIIMYRGKNYAQPPTEIMSPRI-TLSRK----- 148
S EE + I AELARL+GGIVL++ E+ T+IM+RGKNY Q P E+ P + + R+
Sbjct: 161 SMEETRRIGAELARLSGGIVLDVLEDRTVIMFRGKNY-QTPEELYPPTLEAVDRRNADSR 219
Query: 149 ----KALDKSKYRDG 159
+ALD YR G
Sbjct: 220 HHIQRALDSQVYRLG 234
>gi|242082009|ref|XP_002445773.1| hypothetical protein SORBIDRAFT_07g025550 [Sorghum bicolor]
gi|241942123|gb|EES15268.1| hypothetical protein SORBIDRAFT_07g025550 [Sorghum bicolor]
Length = 674
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 56/110 (50%), Gaps = 5/110 (4%)
Query: 25 LKKIEPKESSEMTHD--PEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWK 82
L +EP+ S D E LT EE F +K K K + +GR G+ ++ N+H HWK
Sbjct: 165 LAGMEPRYQSVSREDILGEPLTKEEVFELVKGSLKTKRQLNMGRDGLTHNMLENIHSHWK 224
Query: 83 KHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEENTII-MYRGKNY 131
+ + K+ K ++ I +L GG V IH + +I ++RG+NY
Sbjct: 225 RKRVCKIKCKGVCTVDMDNICQQLEEKVGGKV--IHRQGGVIFLFRGRNY 272
Score = 42.0 bits (97), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 54/114 (47%), Gaps = 3/114 (2%)
Query: 26 KKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQ 85
K + P +T P LTP+E GR+ +G+ G+Y ++ + ++
Sbjct: 286 KPVAPVYPRLVTKVPGGLTPDEATEMRARGRQLPPICKLGKNGVYANLVKQVREAFEACD 345
Query: 86 TLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEENTIIMYRGKNY--AQPPTE 137
++V + + ++I A+L L I+L E+ I+M+RG ++ + PP E
Sbjct: 346 LVRVDCSGLNKSDCRKIGAKLKDLVPCILLSFEFEH-ILMWRGSDWKSSLPPLE 398
>gi|218188278|gb|EEC70705.1| hypothetical protein OsI_02075 [Oryza sativa Indica Group]
Length = 701
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 41 EILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVK 100
E LT EE +K K K + +GR G+ ++ N+H HWK+ + K+ K ++
Sbjct: 183 EPLTKEEVDELVKATLKTKRQLNIGRDGLTHNMLENIHSHWKRKRVCKIKCKGVCTVDMD 242
Query: 101 EIAAELARLTGGIVLEIHEENTIIMYRGKNY 131
+ +L GG V+ H+ I ++RG+NY
Sbjct: 243 NVCQQLEEKVGGKVIH-HQGGVIFLFRGRNY 272
Score = 38.9 bits (89), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 50/100 (50%), Gaps = 3/100 (3%)
Query: 40 PEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEV 99
P+ LTP+E K GR+ +G+ G+Y ++ + ++ ++V + +
Sbjct: 300 PDGLTPDEAEDMRKRGRQLPPICKLGKNGVYLNLVKQVREAFEACDLVRVDCSGLNKSDC 359
Query: 100 KEIAAELARLTGGIVLEIHEENTIIMYRGKNY--AQPPTE 137
++I A+L L +L E+ I+M+RG ++ + PP E
Sbjct: 360 RKIGAKLKDLVPCTLLSFEFEH-ILMWRGNDWKSSLPPLE 398
>gi|115436730|ref|NP_001043122.1| Os01g0495900 [Oryza sativa Japonica Group]
gi|75109409|sp|Q5VMQ5.1|CAF1P_ORYSJ RecName: Full=CRS2-associated factor 1, chloroplastic; AltName:
Full=Chloroplastic group IIA intron splicing facilitator
CRS2-associated factor 1; Flags: Precursor
gi|55297418|dbj|BAD69270.1| putative CRS2-associated factor 1 [Oryza sativa Japonica Group]
gi|55297612|dbj|BAD68987.1| putative CRS2-associated factor 1 [Oryza sativa Japonica Group]
gi|113532653|dbj|BAF05036.1| Os01g0495900 [Oryza sativa Japonica Group]
gi|215694476|dbj|BAG89423.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222618506|gb|EEE54638.1| hypothetical protein OsJ_01906 [Oryza sativa Japonica Group]
Length = 701
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 41 EILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVK 100
E LT EE +K K K + +GR G+ ++ N+H HWK+ + K+ K ++
Sbjct: 183 EPLTKEEVDELVKATLKTKRQLNIGRDGLTHNMLENIHSHWKRKRVCKIKCKGVCTVDMD 242
Query: 101 EIAAELARLTGGIVLEIHEENTIIMYRGKNY 131
+ +L GG V+ H+ I ++RG+NY
Sbjct: 243 NVCQQLEEKVGGKVIH-HQGGVIFLFRGRNY 272
Score = 38.9 bits (89), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 50/100 (50%), Gaps = 3/100 (3%)
Query: 40 PEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEV 99
P+ LTP+E K GR+ +G+ G+Y ++ + ++ ++V + +
Sbjct: 300 PDGLTPDEAEDMRKRGRQLPPICKLGKNGVYLNLVKQVREAFEACDLVRVDCSGLNKSDC 359
Query: 100 KEIAAELARLTGGIVLEIHEENTIIMYRGKNY--AQPPTE 137
++I A+L L +L E+ I+M+RG ++ + PP E
Sbjct: 360 RKIGAKLKDLVPCTLLSFEFEH-ILMWRGNDWKSSLPPLE 398
>gi|154986385|gb|ABS89146.1| CFM2 alternative polyadenylation form 1 [Zea mays]
Length = 668
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 51/95 (53%), Gaps = 2/95 (2%)
Query: 41 EILTPEEHFYFLK-MGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEV 99
E+ P + L+ +G + + + VG+ GI +G++ +H W+ + +K+ + A +
Sbjct: 127 ELALPRDELRRLQGIGIRVRKRLKVGKAGITEGIVNGIHERWRNAEVVKLRCEDVWAMNM 186
Query: 100 KEIAAELARLTGGIVLEIHEENTIIMYRGKNYAQP 134
+ L R TGG+V+ +TII+YRG NY P
Sbjct: 187 RRTHEILERKTGGLVI-WRSGSTIILYRGTNYTYP 220
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 36/165 (21%), Positives = 75/165 (45%), Gaps = 15/165 (9%)
Query: 40 PEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEV 99
P LT E ++ + +GR QG+ +M W++ + K+ +K +
Sbjct: 417 PPKLTDREMTILRRLAHALPFHYALGRSSNLQGLAASMIKLWERCEVAKIALKRDAHNTD 476
Query: 100 KE-IAAELARLTGGIVLEIHEENTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRD 158
E I E+ LTGG +L +E +I+ YRGK++ P + + +++ L S
Sbjct: 477 SELITEEVKELTGGTLLSRDKE-SIVFYRGKDFLPPAVS-----LAIEKRRKLGSSTIYK 530
Query: 159 GLRAVKKYIP-------KLEQELEL-LRAQAETRSENRSDAAEDV 195
+++ +P K+ ++ + +R + + +ENR+++ V
Sbjct: 531 AKPGIEESMPTQNDSVLKVSSDVSVHVREEGTSVTENRAESLNTV 575
>gi|357132246|ref|XP_003567742.1| PREDICTED: CRS2-associated factor 1, chloroplastic-like
[Brachypodium distachyon]
Length = 702
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 48/92 (52%), Gaps = 3/92 (3%)
Query: 41 EILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVK 100
E L+ EE +K K K + +GR G+ ++ N+H HWK+ + K+ K ++
Sbjct: 181 EPLSKEEVAELVKGNLKAKRQLNIGRDGLTHNMLENIHAHWKRKRVCKIKCKGVCTVDMD 240
Query: 101 EIAAELARLTGGIVLEIHEENTII-MYRGKNY 131
+ +L GG V IH + ++ ++RG+NY
Sbjct: 241 NVCQQLEERVGGKV--IHRQGGVVFLFRGRNY 270
Score = 40.4 bits (93), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 51/100 (51%), Gaps = 3/100 (3%)
Query: 40 PEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEV 99
P+ LT +E K GR+ +G+ G+Y ++ + ++ ++V + +
Sbjct: 298 PDGLTSDEATEMRKKGRQLTPVCKLGKNGVYANLVNEVREAFEACDLVRVDCSGLNKSDC 357
Query: 100 KEIAAELARLTGGIVLEIHEENTIIMYRGKNY--AQPPTE 137
++I A+L L I+L E+ I+M+RG ++ + PP+E
Sbjct: 358 RKIGAKLKDLVPCILLSFEFEH-ILMWRGNDWRSSLPPSE 396
>gi|413918578|gb|AFW58510.1| CFM2 alternative polyadenylation form 1 [Zea mays]
Length = 681
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 54 MGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGI 113
+G + + + VG+ GI +G++ +H W+ + +K+ + A ++ L R TGG+
Sbjct: 154 IGIRVRKRLKVGKAGITEGIVNGIHERWRNAEVVKLRCEDVWAMNMRRTHEILERKTGGL 213
Query: 114 VLEIHEENTIIMYRGKNYAQP 134
V+ +TII+YRG NY P
Sbjct: 214 VI-WRSGSTIILYRGTNYTYP 233
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 36/165 (21%), Positives = 75/165 (45%), Gaps = 15/165 (9%)
Query: 40 PEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEV 99
P LT E ++ + +GR QG+ +M W++ + K+ +K +
Sbjct: 430 PPKLTDREMTILRRLAHALPFHYALGRSSNLQGLAASMIKLWERCEVAKIALKRDAHNTD 489
Query: 100 KE-IAAELARLTGGIVLEIHEENTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRD 158
E I E+ LTGG +L +E +I+ YRGK++ P + + +++ L S
Sbjct: 490 SELITEEVKELTGGTLLSRDKE-SIVFYRGKDFLPPAVS-----LAIEKRRKLGSSTIYK 543
Query: 159 GLRAVKKYIP-------KLEQELEL-LRAQAETRSENRSDAAEDV 195
+++ +P K+ ++ + +R + + +ENR+++ V
Sbjct: 544 AKPGIEESMPTQNDSVLKVSSDVSVHVREEGTSVTENRAESLNTV 588
>gi|162462028|ref|NP_001105220.1| CRS2-associated factor 1, chloroplastic precursor [Zea mays]
gi|75147312|sp|Q84N49.1|CAF1P_MAIZE RecName: Full=CRS2-associated factor 1, chloroplastic; AltName:
Full=Chloroplastic group IIA intron splicing facilitator
CRS2-associated factor 1; Flags: Precursor
gi|30349367|gb|AAP22135.1| CRS2-associated factor 1 [Zea mays]
Length = 674
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 55/110 (50%), Gaps = 5/110 (4%)
Query: 25 LKKIEPKESSEMTHD--PEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWK 82
L +EP+ S D E LT EE +K K K + +GR G+ ++ N+H HWK
Sbjct: 165 LAGMEPRYQSVSREDILGEPLTKEEVSELVKGSLKSKRQLNMGRDGLTHNMLENIHSHWK 224
Query: 83 KHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEENTII-MYRGKNY 131
+ + K+ K ++ I +L GG V IH + +I ++RG+NY
Sbjct: 225 RKRVCKIKCKGVCTIDMDNICHQLEEKVGGKV--IHRQGGVIFLFRGRNY 272
Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 53/114 (46%), Gaps = 3/114 (2%)
Query: 26 KKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQ 85
K + P +T P LTP+E G + +G+ G+Y ++ + ++
Sbjct: 286 KPVAPVYPRLVTKVPGGLTPDEATEMRTRGHQLPPICKLGKNGVYANLVNQVREAFEACD 345
Query: 86 TLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEENTIIMYRGKNY--AQPPTE 137
++V + + ++I A+L L I+L E+ I+M+RG ++ + PP E
Sbjct: 346 LVRVDCSGLNKSDCRKIGAKLKDLVPCILLSFEFEH-ILMWRGSDWKSSLPPLE 398
>gi|194688996|gb|ACF78582.1| unknown [Zea mays]
gi|194700546|gb|ACF84357.1| unknown [Zea mays]
gi|223974875|gb|ACN31625.1| unknown [Zea mays]
Length = 560
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 55/110 (50%), Gaps = 5/110 (4%)
Query: 25 LKKIEPKESSEMTHD--PEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWK 82
L +EP+ S D E LT EE +K K K + +GR G+ ++ N+H HWK
Sbjct: 51 LAGMEPRYQSVSREDILGEPLTKEEVSELVKGSLKSKRQLNMGRDGLTHNMLENIHSHWK 110
Query: 83 KHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEENTII-MYRGKNY 131
+ + K+ K ++ I +L GG V IH + +I ++RG+NY
Sbjct: 111 RKRVCKIKCKGVCTIDMDNICHQLEEKVGGKV--IHRQGGVIFLFRGRNY 158
Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 53/114 (46%), Gaps = 3/114 (2%)
Query: 26 KKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQ 85
K + P +T P LTP+E G + +G+ G+Y ++ + ++
Sbjct: 172 KPVAPVYPRLVTKVPGGLTPDEATEMRTRGHQLPPICKLGKNGVYANLVNQVREAFEACD 231
Query: 86 TLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEENTIIMYRGKNY--AQPPTE 137
++V + + ++I A+L L I+L E+ I+M+RG ++ + PP E
Sbjct: 232 LVRVDCSGLNKSDCRKIGAKLKDLVPCILLSFEFEH-ILMWRGSDWKSSLPPLE 284
>gi|356527769|ref|XP_003532480.1| PREDICTED: CRS2-associated factor 1, chloroplastic-like [Glycine
max]
Length = 723
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 49/92 (53%), Gaps = 3/92 (3%)
Query: 41 EILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVK 100
E LT EE +K K + + +GR G+ ++ N+H HWK+ + K+ K ++
Sbjct: 199 EPLTQEEIRDLVKSCMKAQRQLNIGRDGLTHNMLDNIHAHWKRRRACKIRCKGVCTVDMD 258
Query: 101 EIAAELARLTGGIVLEIHEENTII-MYRGKNY 131
+ +L TGG + IH + ++ ++RG+NY
Sbjct: 259 NVCHQLEERTGGKI--IHRKGGVLYLFRGRNY 288
>gi|297603821|ref|NP_001054631.2| Os05g0145300 [Oryza sativa Japonica Group]
gi|255676015|dbj|BAF16545.2| Os05g0145300, partial [Oryza sativa Japonica Group]
Length = 92
Score = 51.2 bits (121), Expect = 7e-04, Method: Composition-based stats.
Identities = 36/81 (44%), Positives = 54/81 (66%)
Query: 14 ARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGV 73
A+KK +++ LKK E + HDPE+LT E+ + K+G + +NYVPVG RG++ GV
Sbjct: 11 AKKKVALLLQKLKKYELPDLPAPRHDPELLTAEQLQAYKKIGFRNRNYVPVGVRGVFGGV 70
Query: 74 ILNMHLHWKKHQTLKVIVKTF 94
+ NMH+HWK H+T++V F
Sbjct: 71 VQNMHMHWKFHETVQVCCDNF 91
>gi|357144801|ref|XP_003573418.1| PREDICTED: CRS2-associated factor 1, mitochondrial-like
[Brachypodium distachyon]
Length = 437
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 51/93 (54%), Gaps = 3/93 (3%)
Query: 41 EILTPEEHFYFL-KMGR-KCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEE 98
E LTP E + + K R + K V +GR G+ ++ ++H HWK + ++V +
Sbjct: 156 EPLTPAERTFVVDKCQRNRTKRQVNLGRDGLTHNMLNDIHNHWKHGEAVRVKCLGVPTVD 215
Query: 99 VKEIAAELARLTGGIVLEIHEENTIIMYRGKNY 131
++ + EL TGG+++ H +I+YRG++Y
Sbjct: 216 MQNVCHELEDKTGGLIIHRH-GGQLILYRGRHY 247
>gi|326525102|dbj|BAK07821.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 443
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 51/93 (54%), Gaps = 3/93 (3%)
Query: 41 EILTPEEHFYFLKMGRK--CKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEE 98
E LTP E + ++ +K K + +GR G+ ++ ++H HWK + ++V +
Sbjct: 161 EPLTPAERSFLVEKCQKNRTKRQINLGRDGLTHNMLNDIHNHWKHGEGVRVKCLGVPTVD 220
Query: 99 VKEIAAELARLTGGIVLEIHEENTIIMYRGKNY 131
++ + EL TGG+++ H +I+YRG++Y
Sbjct: 221 MQNVCHELEDKTGGLIIHRH-GGQLILYRGRHY 252
>gi|115475027|ref|NP_001061110.1| Os08g0174900 [Oryza sativa Japonica Group]
gi|75133775|sp|Q6Z4U2.1|CAF1M_ORYSJ RecName: Full=CRS2-associated factor 1, mitochondrial; Flags:
Precursor
gi|40253285|dbj|BAD05220.1| putative CRS2-associated factor 1 [Oryza sativa Japonica Group]
gi|40253602|dbj|BAD05547.1| putative CRS2-associated factor 1 [Oryza sativa Japonica Group]
gi|113623079|dbj|BAF23024.1| Os08g0174900 [Oryza sativa Japonica Group]
gi|125560323|gb|EAZ05771.1| hypothetical protein OsI_28005 [Oryza sativa Indica Group]
Length = 428
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 41 EILTPEEHFYFLKMGRK--CKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEE 98
E LTP E + + +K K + +GR G+ ++ ++H HWK + ++V +
Sbjct: 155 EPLTPAERAFLVSKCQKSRTKKQINLGRDGLTHNMLNDIHNHWKNDEAVRVKCLGVPTVD 214
Query: 99 VKEIAAELARLTGGIVLEIHEENTIIMYRGKNY 131
++ + +L TGG+++ H +I+YRG++Y
Sbjct: 215 MQNVCHQLEDKTGGLIIHRH-GGQLILYRGRHY 246
>gi|224113759|ref|XP_002332503.1| predicted protein [Populus trichocarpa]
gi|222832483|gb|EEE70960.1| predicted protein [Populus trichocarpa]
Length = 699
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 50/101 (49%), Gaps = 3/101 (2%)
Query: 31 KESSEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVI 90
K E+ DP LT EE + K K + +GR G+ ++ N+H HWK+ + K+
Sbjct: 238 KTREEILGDP--LTQEEIQELVDGCLKAKRQLNMGRDGLTHNMLDNIHAHWKRRRVCKIK 295
Query: 91 VKTFSAEEVKEIAAELARLTGGIVLEIHEENTIIMYRGKNY 131
K ++ + +L TGG ++ + + ++RG+NY
Sbjct: 296 CKGVCTVDMDNVCQQLEERTGGKII-YRKGGVLYLFRGRNY 335
Score = 42.4 bits (98), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 23/106 (21%), Positives = 55/106 (51%), Gaps = 1/106 (0%)
Query: 26 KKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQ 85
K + P + PE LT +E GRK +G+ G+Y+ ++ N+ +++ +
Sbjct: 349 KPVTPVYPRLIQRAPEGLTLQEASGMRNKGRKLIPICKLGKNGVYRDLVRNVREAFEECE 408
Query: 86 TLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEENTIIMYRGKNY 131
+++ + + + ++I A+L L +++ E+ I+M+RG+++
Sbjct: 409 LVRINCQGMNGSDFRKIGAKLRDLVPCVLISFECEH-ILMWRGRDW 453
>gi|125602364|gb|EAZ41689.1| hypothetical protein OsJ_26223 [Oryza sativa Japonica Group]
Length = 615
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 41 EILTPEEHFYFLKMGRK--CKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEE 98
E LTP E + + +K K + +GR G+ ++ ++H HWK + ++V +
Sbjct: 131 EPLTPAERAFLVSKCQKSRTKKQINLGRDGLTHNMLNDIHNHWKNDEAVRVKCLGVPTVD 190
Query: 99 VKEIAAELARLTGGIVLEIHEENTIIMYRGKNY 131
++ + +L TGG+++ H +I+YRG++Y
Sbjct: 191 MQNVCHQLEDKTGGLIIHRH-GGQLILYRGRHY 222
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 65 GRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEENTII 124
GR G+ ++ ++H HWK + ++V +++ + +L TGG+++ H +I
Sbjct: 368 GRDGLTHNMLNDIHNHWKNDEAVRVKCLGVPTVDMQNVCHQLEDKTGGLIIHRH-GGQLI 426
Query: 125 MYRGKNY 131
+YRG++Y
Sbjct: 427 LYRGRHY 433
>gi|225445140|ref|XP_002280611.1| PREDICTED: CRS2-associated factor 1, chloroplastic [Vitis vinifera]
Length = 752
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 41 EILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVK 100
E LT EE ++ K K + +GR G+ ++ N+H HWK+ + K+ K ++
Sbjct: 242 EPLTEEEIKELVQGCVKSKRQLNMGRDGLTHNMLDNIHAHWKRRRVCKIKCKGVCTVDMD 301
Query: 101 EIAAELARLTGGIVLEIHEENTIIMYRGKNY 131
+ +L TGG V+ + + ++RG+NY
Sbjct: 302 NVRQQLEEKTGGKVI-YGKGGVLFLFRGRNY 331
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 54/106 (50%), Gaps = 1/106 (0%)
Query: 26 KKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQ 85
K + P + PE LT EE K GRK + + G+Y ++ N+ +++ +
Sbjct: 345 KPVTPVYPRLVQRAPEGLTLEEAGAMRKKGRKLIPICKLAKNGVYTDLVNNVREAFEECE 404
Query: 86 TLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEENTIIMYRGKNY 131
+++ + +A + ++I A+L L +++ E+ I+M+RG ++
Sbjct: 405 LVRINCQGLNASDYRKIGAKLKDLVPCVLISFEHEH-ILMWRGSDW 449
>gi|356495236|ref|XP_003516485.1| PREDICTED: CRS2-associated factor 1, chloroplastic-like [Glycine
max]
Length = 705
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 41 EILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVK 100
E LT +E +K K + +GR G+ ++ N+H +W + K+ + ++
Sbjct: 237 EPLTKDEINRLIKATEKSSRQLNIGRDGLTHNMLENIHTYWMRRSACKIKCRGVCTVDMD 296
Query: 101 EIAAELARLTGGIVLEIHEENTIIMYRGKNY 131
+ +L TGG ++ + T+ ++RGKNY
Sbjct: 297 NVCQQLEERTGGKII-YRQAGTVYLFRGKNY 326
>gi|297738777|emb|CBI28022.3| unnamed protein product [Vitis vinifera]
Length = 723
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 41 EILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVK 100
E LT EE ++ K K + +GR G+ ++ N+H HWK+ + K+ K ++
Sbjct: 242 EPLTEEEIKELVQGCVKSKRQLNMGRDGLTHNMLDNIHAHWKRRRVCKIKCKGVCTVDMD 301
Query: 101 EIAAELARLTGGIVLEIHEENTIIMYRGKNY 131
+ +L TGG V+ + + ++RG+NY
Sbjct: 302 NVRQQLEEKTGGKVI-YGKGGVLFLFRGRNY 331
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 54/106 (50%), Gaps = 1/106 (0%)
Query: 26 KKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQ 85
K + P + PE LT EE K GRK + + G+Y ++ N+ +++ +
Sbjct: 345 KPVTPVYPRLVQRAPEGLTLEEAGAMRKKGRKLIPICKLAKNGVYTDLVNNVREAFEECE 404
Query: 86 TLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEENTIIMYRGKNY 131
+++ + +A + ++I A+L L +++ E+ I+M+RG ++
Sbjct: 405 LVRINCQGLNASDYRKIGAKLKDLVPCVLISFEHEH-ILMWRGSDW 449
>gi|255589857|ref|XP_002535109.1| conserved hypothetical protein [Ricinus communis]
gi|223524018|gb|EEF27274.1| conserved hypothetical protein [Ricinus communis]
Length = 748
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 41 EILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVK 100
E LT EE ++ K + + +GR G+ ++ N+H HWK+ + K+ ++
Sbjct: 250 EPLTTEEVKILIEGCLKTRRQLNMGRDGLTHNMLDNIHAHWKRRRVCKIKCMGVCTVDMD 309
Query: 101 EIAAELARLTGGIVLEIHEENTIIMYRGKNY 131
+ +L TGG V+ + + ++RG+NY
Sbjct: 310 NVCQQLEERTGGKVI-YRKGGVVYLFRGRNY 339
>gi|242078343|ref|XP_002443940.1| hypothetical protein SORBIDRAFT_07g004760 [Sorghum bicolor]
gi|241940290|gb|EES13435.1| hypothetical protein SORBIDRAFT_07g004760 [Sorghum bicolor]
Length = 437
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 51/93 (54%), Gaps = 3/93 (3%)
Query: 41 EILTPEEHFYFLKMGRK--CKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEE 98
E LTP E + + +K K + +GR G+ ++ ++H +WK + +++ +
Sbjct: 162 EPLTPAERAFLVDKCQKNRTKRQINLGRDGLTHNMLNDIHNNWKTCEAVRIKCLGVPTVD 221
Query: 99 VKEIAAELARLTGGIVLEIHEENTIIMYRGKNY 131
++ + +L TGG+++ H + +I+YRG++Y
Sbjct: 222 MQNVCHQLEDKTGGVIIHRH-GSLLILYRGRHY 253
>gi|357132021|ref|XP_003567631.1| PREDICTED: CRS2-associated factor 2, chloroplastic-like
[Brachypodium distachyon]
Length = 607
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
Query: 41 EILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVK 100
E LTP E +K + +GR G+ ++ +H HW++ + KV + ++K
Sbjct: 231 EPLTPAEVRALVKPHMSHNRQLNIGRDGLTHNMLEMIHCHWRRQEICKVRCRGVPTVDMK 290
Query: 101 EIAAELARLTGGIVLEIHEENTII-MYRGKNY 131
+ L +GG V IH ++ +YRG+NY
Sbjct: 291 NLCYHLEEKSGGKV--IHRVGGVVFLYRGRNY 320
>gi|226530577|ref|NP_001147995.1| LOC100281604 [Zea mays]
gi|195615022|gb|ACG29341.1| CRS2-associated factor 1 [Zea mays]
Length = 362
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 58 CKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEI 117
C + +G+ G+ ++ ++H HWK+ + +++ ++ I L TGG V+
Sbjct: 158 CSRQINLGKGGVTHNMLDDIHNHWKRAEAVRIKCLGVPTLDMDNICFHLEDKTGGKVVS- 216
Query: 118 HEENTIIMYRGKNY 131
N II+YRG+NY
Sbjct: 217 RSINIIILYRGRNY 230
>gi|302763677|ref|XP_002965260.1| hypothetical protein SELMODRAFT_62891 [Selaginella moellendorffii]
gi|302809791|ref|XP_002986588.1| hypothetical protein SELMODRAFT_42935 [Selaginella moellendorffii]
gi|300145771|gb|EFJ12445.1| hypothetical protein SELMODRAFT_42935 [Selaginella moellendorffii]
gi|300167493|gb|EFJ34098.1| hypothetical protein SELMODRAFT_62891 [Selaginella moellendorffii]
Length = 366
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 55/111 (49%), Gaps = 3/111 (2%)
Query: 21 IVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLH 80
+EG + I E+ +P LTP+E + K V +G+ G+ ++ +H H
Sbjct: 74 FLEGQRPILATTREEVMGEP--LTPDEIGDLVLACNKEHRQVNIGKDGLTHNMLDLIHCH 131
Query: 81 WKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEENTIIMYRGKNY 131
WK+ + +K+ K ++ + + TGG +++ H +I ++RG+NY
Sbjct: 132 WKRRRVIKLRCKGVPTIDMDNVCFHIEDKTGGKIIQRH-GGSIYLFRGRNY 181
Score = 42.4 bits (98), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 40 PEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEV 99
P L+ E Y + GR+ K + R G+Y ++ + ++ + +K+ + + +V
Sbjct: 209 PAGLSVEHADYLRRRGRRVKPLTKLSRNGVYLHLVNEVKSAFEVDELVKLDCRGMNIADV 268
Query: 100 KEIAAELARLTGGIVLEIHEENTIIMYRG 128
++I A+L L GIVL E+N ++M+RG
Sbjct: 269 RKIGAKLKELL-GIVLLSFEDNCVLMWRG 296
>gi|413921149|gb|AFW61081.1| hypothetical protein ZEAMMB73_173916 [Zea mays]
Length = 291
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 58 CKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEI 117
C + +G+ G+ ++ ++H HWK+ + +++ ++ I L TGG V+
Sbjct: 158 CSRQINLGKGGVTHNMLDDIHNHWKRAEAVRIKCLGVPTLDMDNICFHLEDKTGGKVVS- 216
Query: 118 HEENTIIMYRGKNY 131
N II+YRG+NY
Sbjct: 217 RSINIIILYRGRNY 230
>gi|147799432|emb|CAN76866.1| hypothetical protein VITISV_012308 [Vitis vinifera]
Length = 393
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 41 EILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVK 100
E LT EE ++ K K + +GR G+ ++ N+H HWK+ + K+ K ++
Sbjct: 242 EPLTEEEIKELVQGCVKSKRQLNMGRDGLTHNMLDNIHAHWKRRRVCKIKCKGVCTVDMD 301
Query: 101 EIAAELARLTGGIVLEIHEENTIIMYRGKNY 131
+ +L TGG V+ + + ++RG+NY
Sbjct: 302 NVRQQLEEKTGGKVI-YGKGGVLFLFRGRNY 331
>gi|218200589|gb|EEC83016.1| hypothetical protein OsI_28075 [Oryza sativa Indica Group]
Length = 365
Score = 46.2 bits (108), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 58 CKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEI 117
C + +G+ G+ +I ++H HWK+ + +++ ++ I L TGG V+
Sbjct: 161 CSRQINLGKGGVTHNMIDDIHNHWKRAEAVRIKCLGVPTLDMDNICFHLEDKTGGKVI-Y 219
Query: 118 HEENTIIMYRGKNY 131
N +I+YRG+NY
Sbjct: 220 RNINILILYRGRNY 233
>gi|357520913|ref|XP_003630745.1| CRS2-associated factor [Medicago truncatula]
gi|355524767|gb|AET05221.1| CRS2-associated factor [Medicago truncatula]
Length = 698
Score = 46.2 bits (108), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 41 EILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVK 100
E LT EE ++ K + +GR G ++ N+H HWK+ + K+ ++
Sbjct: 170 EPLTKEEINELVRSTLKSSRQLNLGRDGFIHNMLDNIHAHWKRRRVCKIKCIGVCTVDMD 229
Query: 101 EIAAELARLTGGIVLEIHEENTIIMYRGKNY 131
+ +L TGG V+ I ++RG+NY
Sbjct: 230 NVCQQLEEKTGGKVI-YRRGGVIYLFRGRNY 259
>gi|115475115|ref|NP_001061154.1| Os08g0188000 [Oryza sativa Japonica Group]
gi|113623123|dbj|BAF23068.1| Os08g0188000, partial [Oryza sativa Japonica Group]
Length = 361
Score = 46.2 bits (108), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 58 CKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEI 117
C + +G+ G+ +I ++H HWK+ + +++ ++ I L TGG V+
Sbjct: 157 CSRQINLGKGGVTHNMIDDIHNHWKRAEAVRIKCLGVPTLDMDNICFHLEDKTGGKVI-Y 215
Query: 118 HEENTIIMYRGKNY 131
N +I+YRG+NY
Sbjct: 216 RNINILILYRGRNY 229
>gi|297792957|ref|XP_002864363.1| hypothetical protein ARALYDRAFT_331830 [Arabidopsis lyrata subsp.
lyrata]
gi|297310198|gb|EFH40622.1| hypothetical protein ARALYDRAFT_331830 [Arabidopsis lyrata subsp.
lyrata]
Length = 362
Score = 46.2 bits (108), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 58 CKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEI 117
C + +G+ G+ +I ++H HWKK + +++ ++ I L +GG ++
Sbjct: 156 CSRQINLGKGGVTHNMIDDIHNHWKKAEAVRIKCLGVPTLDMDNICFHLEEKSGGKIVYR 215
Query: 118 HEENTIIMYRGKNY 131
H N +++YRG+NY
Sbjct: 216 H-INILVLYRGRNY 228
>gi|238014734|gb|ACR38402.1| unknown [Zea mays]
gi|413921148|gb|AFW61080.1| CRS2-associated factor 1 [Zea mays]
Length = 362
Score = 46.2 bits (108), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 58 CKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEI 117
C + +G+ G+ ++ ++H HWK+ + +++ ++ I L TGG V+
Sbjct: 158 CSRQINLGKGGVTHNMLDDIHNHWKRAEAVRIKCLGVPTLDMDNICFHLEDKTGGKVVS- 216
Query: 118 HEENTIIMYRGKNY 131
N II+YRG+NY
Sbjct: 217 RSINIIILYRGRNY 230
>gi|143955290|sp|Q0J7J7.2|CAF2M_ORYSJ RecName: Full=CRS2-associated factor 2, mitochondrial; Flags:
Precursor
gi|222640037|gb|EEE68169.1| hypothetical protein OsJ_26288 [Oryza sativa Japonica Group]
Length = 366
Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 58 CKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEI 117
C + +G+ G+ +I ++H HWK+ + +++ ++ I L TGG V+
Sbjct: 162 CSRQINLGKGGVTHNMIDDIHNHWKRAEAVRIKCLGVPTLDMDNICFHLEDKTGGKVI-Y 220
Query: 118 HEENTIIMYRGKNY 131
N +I+YRG+NY
Sbjct: 221 RNINILILYRGRNY 234
>gi|222618317|gb|EEE54449.1| hypothetical protein OsJ_01538 [Oryza sativa Japonica Group]
Length = 587
Score = 45.8 bits (107), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 64 VGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEENTI 123
+GR G+ ++ +H HW++ + KV + ++K + L +GG V IH +
Sbjct: 231 IGRDGLTHNMLEMIHCHWRRQEICKVRCRGVPTVDMKNLCYHLEEKSGGKV--IHRVGGV 288
Query: 124 I-MYRGKNY 131
+ +YRG+NY
Sbjct: 289 VFLYRGRNY 297
>gi|357144748|ref|XP_003573400.1| PREDICTED: CRS2-associated factor 2, mitochondrial-like
[Brachypodium distachyon]
Length = 365
Score = 45.8 bits (107), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 41/75 (54%), Gaps = 3/75 (4%)
Query: 58 CKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEI 117
C + +G+ G+ ++ ++H HWK+ + +++ + ++ I L TGG + I
Sbjct: 161 CSRQINLGKGGVTHNMLDDIHNHWKRAEAVRIKCLGVATLDMDNICFHLEDKTGGKI--I 218
Query: 118 HEE-NTIIMYRGKNY 131
H N +I+YRG+NY
Sbjct: 219 HRSINILILYRGRNY 233
>gi|194697426|gb|ACF82797.1| unknown [Zea mays]
Length = 611
Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
Query: 41 EILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVK 100
E LTP E +K + +GR G+ ++ +H HW++ + KV + ++K
Sbjct: 232 EPLTPSEVRALVKPHISHNRQLNIGRDGLTHNMLEMIHCHWRRQEICKVRCRGVPTVDMK 291
Query: 101 EIAAELARLTGGIVLEIHEENTII-MYRGKNY 131
+ L +GG V IH ++ +YRG++Y
Sbjct: 292 NLCYHLEEKSGGKV--IHRVGGVVFLYRGRHY 321
>gi|115436276|ref|NP_001042896.1| Os01g0323300 [Oryza sativa Japonica Group]
gi|75115027|sp|Q657G7.1|CAF2P_ORYSJ RecName: Full=CRS2-associated factor 2, chloroplastic; AltName:
Full=Chloroplastic group IIA intron splicing facilitator
CRS2-associated factor 2; Flags: Precursor
gi|52075771|dbj|BAD44991.1| putative CRS2-associated factor 2 [Oryza sativa Japonica Group]
gi|52076260|dbj|BAD45045.1| putative CRS2-associated factor 2 [Oryza sativa Japonica Group]
gi|113532427|dbj|BAF04810.1| Os01g0323300 [Oryza sativa Japonica Group]
Length = 607
Score = 45.8 bits (107), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 64 VGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEENTI 123
+GR G+ ++ +H HW++ + KV + ++K + L +GG V IH +
Sbjct: 251 IGRDGLTHNMLEMIHCHWRRQEICKVRCRGVPTVDMKNLCYHLEEKSGGKV--IHRVGGV 308
Query: 124 I-MYRGKNY 131
+ +YRG+NY
Sbjct: 309 VFLYRGRNY 317
>gi|125525663|gb|EAY73777.1| hypothetical protein OsI_01650 [Oryza sativa Indica Group]
Length = 609
Score = 45.8 bits (107), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 64 VGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEENTI 123
+GR G+ ++ +H HW++ + KV + ++K + L +GG V IH +
Sbjct: 253 IGRDGLTHNMLEMIHCHWRRQEICKVRCRGVPTVDMKNLCYHLEEKSGGKV--IHRVGGV 310
Query: 124 I-MYRGKNY 131
+ +YRG+NY
Sbjct: 311 VFLYRGRNY 319
>gi|162464008|ref|NP_001105669.1| CRS2-associated factor 2, chloroplastic precursor [Zea mays]
gi|75147311|sp|Q84N48.1|CAF2P_MAIZE RecName: Full=CRS2-associated factor 2, chloroplastic; AltName:
Full=Chloroplastic group IIA intron splicing facilitator
CRS2-associated factor 2; Flags: Precursor
gi|30349369|gb|AAP22136.1| CRS2-associated factor 2 [Zea mays]
gi|414877310|tpg|DAA54441.1| TPA: crs2 associated factor2 [Zea mays]
Length = 611
Score = 45.4 bits (106), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
Query: 41 EILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVK 100
E LTP E +K + +GR G+ ++ +H HW++ + KV + ++K
Sbjct: 232 EPLTPSEVRALVKPHISHNRQLNIGRDGLTHNMLEMIHCHWRRQEICKVRCRGVPTVDMK 291
Query: 101 EIAAELARLTGGIVLEIHEENTII-MYRGKNY 131
+ L +GG V IH ++ +YRG++Y
Sbjct: 292 NLCYHLEEKSGGKV--IHRVGGVVFLYRGRHY 321
>gi|317106625|dbj|BAJ53131.1| JHL05D22.2 [Jatropha curcas]
Length = 415
Score = 45.4 bits (106), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 57 KCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLE 116
K K + +GR G+ ++ ++H HWK + +++ ++K + ++L T G ++
Sbjct: 178 KTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCSQLEDKTFGKIIH 237
Query: 117 IHEENTIIMYRGKNY 131
H ++++YRG+NY
Sbjct: 238 RH-CGSLVLYRGRNY 251
>gi|242080803|ref|XP_002445170.1| hypothetical protein SORBIDRAFT_07g005220 [Sorghum bicolor]
gi|241941520|gb|EES14665.1| hypothetical protein SORBIDRAFT_07g005220 [Sorghum bicolor]
Length = 353
Score = 45.4 bits (106), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 58 CKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEI 117
C + +G+ G+ ++ ++H HWK+ + +++ ++ I L TGG V+
Sbjct: 162 CSRQINLGKGGVTHNMLDDIHNHWKRAEAVRIKCLGVPTLDMDNICFHLEDKTGGKVI-Y 220
Query: 118 HEENTIIMYRGKNY 131
N II+YRG+NY
Sbjct: 221 RSINIIILYRGRNY 234
>gi|110742047|dbj|BAE98956.1| hypothetical protein [Arabidopsis thaliana]
Length = 717
Score = 45.4 bits (106), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 43 LTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKE- 101
L P+E ++ R + +GR QG+ M W+K K+ +K E
Sbjct: 423 LGPKEATALRRLARSIPPHFALGRSRQLQGLATAMVRLWEKSMLAKIAIKRGVQSTTSER 482
Query: 102 IAAELARLTGGIVLEIHEENTIIMYRGKNY 131
+A +L +LTGGI+L ++ ++ YRGKN+
Sbjct: 483 MAEDLKKLTGGIMLS-RNKDFLVFYRGKNF 511
>gi|226508160|ref|NP_001140244.1| uncharacterized protein LOC100272285 [Zea mays]
gi|194698680|gb|ACF83424.1| unknown [Zea mays]
gi|413917198|gb|AFW57130.1| hypothetical protein ZEAMMB73_054545 [Zea mays]
Length = 424
Score = 45.1 bits (105), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 49/91 (53%), Gaps = 3/91 (3%)
Query: 43 LTPEEHFYFLKMGRK--CKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVK 100
LTP E + + +K K + +GR G ++ ++H +WK + +++ +++
Sbjct: 165 LTPAERAFLVDRCQKNRTKRQINLGRDGFTHNMLSDVHNNWKTCEAVRIKCLGVPTVDMQ 224
Query: 101 EIAAELARLTGGIVLEIHEENTIIMYRGKNY 131
+ +L TGG+++ H + +I+YRG++Y
Sbjct: 225 NVCHQLEDKTGGLIIHRH-GSLLILYRGRHY 254
>gi|242052829|ref|XP_002455560.1| hypothetical protein SORBIDRAFT_03g013160 [Sorghum bicolor]
gi|241927535|gb|EES00680.1| hypothetical protein SORBIDRAFT_03g013160 [Sorghum bicolor]
Length = 614
Score = 45.1 bits (105), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
Query: 41 EILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVK 100
E LTP E +K + +GR G+ ++ +H HW++ + KV + ++K
Sbjct: 234 EPLTPSEVRALVKPHISHNRQLNIGRDGLTHNMLEMIHCHWRRQEICKVRCRGVPTVDMK 293
Query: 101 EIAAELARLTGGIVLEIHEENTII-MYRGKNY 131
+ L +GG V IH ++ +YRG++Y
Sbjct: 294 NLCYHLEEKSGGKV--IHRVGGVVFVYRGRHY 323
>gi|449443167|ref|XP_004139352.1| PREDICTED: CRS2-associated factor 1, chloroplastic-like [Cucumis
sativus]
gi|449521361|ref|XP_004167698.1| PREDICTED: CRS2-associated factor 1, chloroplastic-like [Cucumis
sativus]
Length = 745
Score = 44.7 bits (104), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Query: 56 RKCKNY---VPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGG 112
R C N + +GR G+ ++ N+H WK+ + K+ K ++ + +L TGG
Sbjct: 262 RGCINSNRQLNIGRDGLTHNMLENIHALWKRRRVCKIKCKGVCTVDMDNVKQQLEERTGG 321
Query: 113 IVLEIHEENTIIMYRGKNY 131
++ + +YRG+NY
Sbjct: 322 KII-YSRGGALYLYRGRNY 339
Score = 42.4 bits (98), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 52/94 (55%), Gaps = 1/94 (1%)
Query: 38 HDPEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAE 97
H P+ LT EE K GRK +G+ G+Y ++ ++ +++ + +++ + +
Sbjct: 365 HIPDGLTLEEVTEMRKKGRKLIPICKLGKNGVYSALVKHVREAFEECELVRINCQGLNGS 424
Query: 98 EVKEIAAELARLTGGIVLEIHEENTIIMYRGKNY 131
+ ++I A+L L +++ E+ I+++RG+++
Sbjct: 425 DFRKIGAKLKDLVPCVLISFESEH-ILLWRGRDW 457
>gi|15240416|ref|NP_200300.1| CRS2-associated factor 2 [Arabidopsis thaliana]
gi|75170294|sp|Q9FFU1.1|CAF2M_ARATH RecName: Full=CRS2-associated factor 2, mitochondrial; Flags:
Precursor
gi|9758269|dbj|BAB08768.1| unnamed protein product [Arabidopsis thaliana]
gi|332009170|gb|AED96553.1| CRS2-associated factor 2 [Arabidopsis thaliana]
Length = 358
Score = 44.7 bits (104), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 58 CKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEI 117
C + +G+ G+ +I ++H HWKK + +++ ++ I L +GG ++
Sbjct: 160 CTRQINLGKGGVTHNMIDDIHNHWKKAEAVRIKCLGVPTLDMDNICFHLEEKSGGKIV-Y 218
Query: 118 HEENTIIMYRGKNY 131
N +++YRG+NY
Sbjct: 219 RNINILVLYRGRNY 232
>gi|255563935|ref|XP_002522967.1| conserved hypothetical protein [Ricinus communis]
gi|223537779|gb|EEF39397.1| conserved hypothetical protein [Ricinus communis]
Length = 409
Score = 44.3 bits (103), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 58 CKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEI 117
C + +G+ G+ ++ ++H HWKK + +++ ++ + L +GG ++
Sbjct: 202 CSRQINLGKGGVTHNMLDDIHNHWKKAEAVRIKCLGVPTLDMDNVCFHLEDKSGGKIIYR 261
Query: 118 HEENTIIMYRGKNY 131
H N +++YRG+NY
Sbjct: 262 H-INILLLYRGRNY 274
>gi|449468496|ref|XP_004151957.1| PREDICTED: CRS2-associated factor 2, mitochondrial-like [Cucumis
sativus]
gi|449489970|ref|XP_004158472.1| PREDICTED: CRS2-associated factor 2, mitochondrial-like [Cucumis
sativus]
Length = 358
Score = 43.9 bits (102), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 58 CKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEI 117
C + +G+ G+ ++ ++H HWK+ + +++ ++ I L +GG ++
Sbjct: 161 CSRQINLGKGGVTHNMLDDIHNHWKRAEAVRIKCLGVPTLDMDNICFHLEDKSGGKIIYR 220
Query: 118 HEENTIIMYRGKNY 131
H N +++YRG+NY
Sbjct: 221 H-INILLLYRGRNY 233
>gi|255541412|ref|XP_002511770.1| conserved hypothetical protein [Ricinus communis]
gi|223548950|gb|EEF50439.1| conserved hypothetical protein [Ricinus communis]
Length = 411
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 57 KCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLE 116
K K + +GR G+ ++ ++H HWK + +++ ++K + +L T G ++
Sbjct: 173 KTKKQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCTQLEDKTFGKIIH 232
Query: 117 IHEENTIIMYRGKNY 131
H +++YRG+NY
Sbjct: 233 RH-CGLLVLYRGRNY 246
>gi|22329043|ref|NP_194830.2| CRS2-associated factor 1 [Arabidopsis thaliana]
gi|75161464|sp|Q8VYD9.1|CAF1M_ARATH RecName: Full=CRS2-associated factor 1, mitochondrial; Flags:
Precursor
gi|18176015|gb|AAL59968.1| unknown protein [Arabidopsis thaliana]
gi|20465409|gb|AAM20129.1| unknown protein [Arabidopsis thaliana]
gi|332660446|gb|AEE85846.1| CRS2-associated factor 1 [Arabidopsis thaliana]
Length = 405
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 57 KCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLE 116
K K V +GR G+ ++ +++ HWK + ++V ++K + L T G V+
Sbjct: 175 KTKRQVNLGRDGLTHNMLNDVYNHWKHAEAVRVKCLGVPTLDMKNVIFHLEDKTFGQVVS 234
Query: 117 IHEENTIIMYRGKNY 131
H T+++YRG+NY
Sbjct: 235 KH-SGTLVLYRGRNY 248
>gi|225453847|ref|XP_002272563.1| PREDICTED: CRS2-associated factor 1, mitochondrial [Vitis vinifera]
gi|296089125|emb|CBI38828.3| unnamed protein product [Vitis vinifera]
Length = 418
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 57 KCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLE 116
+ K + +GR G+ ++ ++H HWK + +++ ++K + +L T G V+
Sbjct: 180 RTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCMGVPTVDMKNVCTQLEDKTSGKVIH 239
Query: 117 IHEENTIIMYRGKNY 131
+ +++YRG+NY
Sbjct: 240 -RQGGLLVLYRGRNY 253
>gi|326525845|dbj|BAJ93099.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 607
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 64 VGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEENTI 123
+GR G+ ++ +H HW++ + KV + ++ + L +GG V++ +
Sbjct: 253 IGRDGLTHNMLEMIHCHWRRQEVCKVRCRGVPTVDMNNLCYHLEEKSGGKVIK-RVGGVV 311
Query: 124 IMYRGKNY 131
+YRG+NY
Sbjct: 312 FLYRGRNY 319
>gi|356530475|ref|XP_003533806.1| PREDICTED: CRS2-associated factor 2, mitochondrial-like [Glycine
max]
Length = 388
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 58 CKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEI 117
C + +G+ G+ ++ ++H HWKK + +++ ++ + L +GG V+
Sbjct: 159 CARQINLGKGGVTHNMLGDIHNHWKKAEVVRIKCLGVPTLDMDNVCFHLEDKSGGKVI-Y 217
Query: 118 HEENTIIMYRGKNY 131
N +++YRG+NY
Sbjct: 218 RNINILLLYRGRNY 231
>gi|356560247|ref|XP_003548405.1| PREDICTED: CRS2-associated factor 1, mitochondrial-like [Glycine
max]
Length = 396
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 57 KCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLE 116
K +V +GR G+ ++ +H HWK + +++ ++ I +L T G V+
Sbjct: 175 KTNRHVNLGRDGLTHNMLNVIHNHWKFAEAVRIKCMGVPTMDMNNICTQLEDKTFGKVIF 234
Query: 117 IHEENTIIMYRGKNY 131
H T+I+YRG+NY
Sbjct: 235 RH-GGTLILYRGRNY 248
>gi|356496030|ref|XP_003516873.1| PREDICTED: CRS2-associated factor 2, mitochondrial-like [Glycine
max]
Length = 358
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 58 CKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEI 117
C + +G+ G+ ++ ++H HWKK + +++ ++ + L +GG V+
Sbjct: 159 CARQINLGKGGVTHNMLGDIHNHWKKAEAVRIKCLGVPTLDMDNVCFHLEDKSGGKVI-Y 217
Query: 118 HEENTIIMYRGKNY 131
N +++YRG+NY
Sbjct: 218 RNINILLLYRGRNY 231
>gi|14596153|gb|AAK68804.1| Unknown protein [Arabidopsis thaliana]
Length = 284
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 57 KCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLE 116
K K V +GR G+ ++ +++ HWK + ++V ++K + L T G V+
Sbjct: 175 KTKRQVNLGRDGLTHNMLNDVYNHWKHAEAVRVKCLGVPTLDMKNVIFHLEDKTFGQVVS 234
Query: 117 IHEENTIIMYRGKNY 131
H T+++YRG+NY
Sbjct: 235 KH-SGTLVLYRGRNY 248
>gi|326492864|dbj|BAJ90288.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 630
Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 43 LTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKT-FSAEEVKE 101
L EE Y K+ R + +GR QG+ + W+K K+ VK ++
Sbjct: 366 LADEELTYLRKLARPLPTHFALGRNTRLQGLAAAVLKLWEKSLIAKIAVKVGIQNTNNEQ 425
Query: 102 IAAELARLTGGIVLEIHEENTIIMYRGKNY 131
+A L LTGG ++ + ++ +I+YRGK++
Sbjct: 426 MAWNLKHLTGGTII-LRNKDFVILYRGKDF 454
>gi|168040806|ref|XP_001772884.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675795|gb|EDQ62286.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 463
Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 40 PEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEV 99
P LT EE K+GR+ +G+ G+Y ++ ++ +K +KV K + +
Sbjct: 206 PAGLTIEEANNLRKLGRELPPVCHLGKNGVYVNLVRDVRNAFKVDDLVKVDCKNMNPSDY 265
Query: 100 KEIAAELARLTGGIVLEIHEENTIIMYRG 128
K+I A+L L ++L E +I+M+RG
Sbjct: 266 KKIGAKLKDLVPCVLLSFERE-SILMWRG 293
Score = 42.4 bits (98), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 43 LTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEI 102
LT E + RK + +GR G+ ++ +H HWK+ + KV K ++ +
Sbjct: 91 LTSAEVRELVTKARKEPRQINLGRDGLTHNMLNLVHEHWKRRRVCKVKCKGVPTVDMDNV 150
Query: 103 AAELARLTGGIVLEIHEENTIIMYRGKNY 131
L TGG ++ + + + ++RG+NY
Sbjct: 151 CRVLEEKTGGKII-LRQGGAVYLFRGRNY 178
>gi|297802930|ref|XP_002869349.1| DNA binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297315185|gb|EFH45608.1| DNA binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 408
Score = 42.7 bits (99), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 57 KCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLE 116
K K V +GR G+ ++ +++ HWK + ++V ++K + L T G V+
Sbjct: 176 KTKRQVNLGRDGLTHNMLNDIYNHWKHAEAVRVKCLGVPTLDMKNVIFHLEDKTFGQVVS 235
Query: 117 IHEENTIIMYRGKNY 131
H T+++YRG+NY
Sbjct: 236 KH-CGTLVLYRGRNY 249
>gi|297737420|emb|CBI26621.3| unnamed protein product [Vitis vinifera]
Length = 343
Score = 42.7 bits (99), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/74 (22%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 58 CKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEI 117
C + +G+ G+ ++ ++H HWK+ + +++ +++ + L GG ++
Sbjct: 146 CSRQINLGKGGVTHNMLDDIHNHWKRAEAVRIKCLGVPTLDMENVCFHLEDKCGGKII-Y 204
Query: 118 HEENTIIMYRGKNY 131
N I++YRG+NY
Sbjct: 205 RNINIILLYRGRNY 218
>gi|224124340|ref|XP_002319307.1| predicted protein [Populus trichocarpa]
gi|222857683|gb|EEE95230.1| predicted protein [Populus trichocarpa]
Length = 354
Score = 42.4 bits (98), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 17/74 (22%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 58 CKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEI 117
C + +G+ G+ ++ ++H HWK+ + +++ ++ + L +GG V+
Sbjct: 156 CSRQINLGKGGVTHNMLDDIHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEDKSGGKVV-Y 214
Query: 118 HEENTIIMYRGKNY 131
N +++YRG+NY
Sbjct: 215 RNINILLLYRGRNY 228
>gi|225461009|ref|XP_002278505.1| PREDICTED: CRS2-associated factor 2, mitochondrial-like [Vitis
vinifera]
Length = 452
Score = 42.4 bits (98), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 17/74 (22%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 58 CKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEI 117
C + +G+ G+ ++ ++H HWK+ + +++ +++ + L GG ++
Sbjct: 165 CSRQINLGKGGVTHNMLDDIHNHWKRAEAVRIKCLGVPTLDMENVCFHLEDKCGGKII-Y 223
Query: 118 HEENTIIMYRGKNY 131
N I++YRG+NY
Sbjct: 224 RNINIILLYRGRNY 237
>gi|359473240|ref|XP_003631275.1| PREDICTED: LOW QUALITY PROTEIN: CRS2-associated factor 2,
chloroplastic-like [Vitis vinifera]
Length = 560
Score = 42.0 bits (97), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Query: 62 VPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEEN 121
V +GR G+ ++ +H HWK+ + KV K ++ + L TGG + IH
Sbjct: 215 VNLGRDGLTHNMLELIHSHWKRQRVCKVWCKGVPTIDMDNVCHHLEEKTGGKI--IHRVG 272
Query: 122 TII-MYRGKNY 131
++ ++RG+NY
Sbjct: 273 GVVYLFRGRNY 283
>gi|2980765|emb|CAA18192.1| hypothetical protein [Arabidopsis thaliana]
gi|7270003|emb|CAB79819.1| hypothetical protein [Arabidopsis thaliana]
Length = 392
Score = 41.6 bits (96), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 57 KCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLE 116
K K V +GR G+ ++ +++ HWK + ++V ++K + L T G V+
Sbjct: 175 KTKRQVNLGRDGLTHNMLNDVYNHWKHAEAVRVKCLGVPTLDMKNVIFHLEDKTFGQVVS 234
Query: 117 IHEENTIIMYRGKNY 131
H T+++YRG+NY
Sbjct: 235 KH-SGTLVLYRGRNY 248
>gi|297739073|emb|CBI28562.3| unnamed protein product [Vitis vinifera]
Length = 422
Score = 41.6 bits (96), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Query: 62 VPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEEN 121
V +GR G+ ++ +H HWK+ + KV K ++ + L TGG + IH
Sbjct: 82 VNLGRDGLTHNMLELIHSHWKRQRVCKVWCKGVPTIDMDNVCHHLEEKTGGKI--IHRVG 139
Query: 122 TII-MYRGKNY 131
++ ++RG+NY
Sbjct: 140 GVVYLFRGRNY 150
>gi|224130086|ref|XP_002320749.1| predicted protein [Populus trichocarpa]
gi|222861522|gb|EEE99064.1| predicted protein [Populus trichocarpa]
Length = 405
Score = 41.6 bits (96), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 57 KCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLE 116
K K + +G G+ ++ ++H HWK + ++V ++K + +L T G ++
Sbjct: 173 KTKKQINLGIDGLTHNMLNDIHNHWKHDEAVRVKCMGVPTVDMKNVCTQLEDKTFGKIIH 232
Query: 117 IHEENTIIMYRGKNY 131
H +++YRG+NY
Sbjct: 233 RH-CGLLVLYRGRNY 246
>gi|42573097|ref|NP_974645.1| CRS2-associated factor 1 [Arabidopsis thaliana]
gi|332660445|gb|AEE85845.1| CRS2-associated factor 1 [Arabidopsis thaliana]
Length = 341
Score = 41.6 bits (96), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 57 KCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLE 116
K K V +GR G+ ++ +++ HWK + ++V ++K + L T G V+
Sbjct: 175 KTKRQVNLGRDGLTHNMLNDVYNHWKHAEAVRVKCLGVPTLDMKNVIFHLEDKTFGQVVS 234
Query: 117 IHEENTIIMYRGKNY 131
H T+++YRG+NY
Sbjct: 235 KH-SGTLVLYRGRNY 248
>gi|297836246|ref|XP_002886005.1| hypothetical protein ARALYDRAFT_480467 [Arabidopsis lyrata subsp.
lyrata]
gi|297331845|gb|EFH62264.1| hypothetical protein ARALYDRAFT_480467 [Arabidopsis lyrata subsp.
lyrata]
Length = 700
Score = 41.6 bits (96), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 41 EILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVK 100
E LT EE + K + +GR G+ ++ N+H WK+ + K+ K ++
Sbjct: 241 EPLTKEEIRELVTSCLKTTRQLNMGRDGLTHNMLNNIHDLWKRRRVCKIKCKGVCTVDMD 300
Query: 101 EIAAELARLTGGIVLEIHEENTIIMYRGKNY 131
++ +L GG V+ + ++RG+NY
Sbjct: 301 KVCEQLEEKIGGKVI-YRRGGVLFLFRGRNY 330
Score = 37.4 bits (85), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 21/106 (19%), Positives = 51/106 (48%), Gaps = 1/106 (0%)
Query: 26 KKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQ 85
K + P + PE LT +E + GR+ +G+ G+Y ++ N+ ++ +
Sbjct: 344 KPVAPVYPRLIQQVPEGLTLQEATEMRRKGRELMPICKLGKNGVYCDLVKNVKEAFEVCE 403
Query: 86 TLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEENTIIMYRGKNY 131
+++ + + ++I A+L L +++ E I+++RG+ +
Sbjct: 404 LVRIDCQGMKGSDFRKIGAKLKDLVPCVLISFENEQ-ILIWRGREW 448
>gi|307135966|gb|ADN33825.1| RNA splicing factor [Cucumis melo subsp. melo]
Length = 603
Score = 41.6 bits (96), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Query: 62 VPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEEN 121
V +GR G+ ++ +H HWK+ + KV K ++ I + TGG + IH
Sbjct: 261 VNLGRDGLTHNMLELIHSHWKRQRVCKVRCKGVPTVDMDNICHHIEEKTGGKI--IHRVG 318
Query: 122 TII-MYRGKNY 131
++ ++RG+NY
Sbjct: 319 GVLYLFRGRNY 329
>gi|449478585|ref|XP_004155360.1| PREDICTED: LOW QUALITY PROTEIN: CRS2-associated factor 2,
chloroplastic-like [Cucumis sativus]
Length = 603
Score = 41.2 bits (95), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Query: 62 VPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEEN 121
V +GR G+ ++ +H HWK+ + KV K ++ I + TGG + IH
Sbjct: 261 VNLGRDGLTHNMLELIHSHWKRQRVCKVRCKGVPTVDMDNICHHIEEKTGGKI--IHRVG 318
Query: 122 TII-MYRGKNY 131
++ ++RG+NY
Sbjct: 319 GVLYLFRGRNY 329
>gi|449434945|ref|XP_004135256.1| PREDICTED: LOW QUALITY PROTEIN: CRS2-associated factor 2,
chloroplastic-like [Cucumis sativus]
Length = 602
Score = 41.2 bits (95), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Query: 62 VPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEEN 121
V +GR G+ ++ +H HWK+ + KV K ++ I + TGG + IH
Sbjct: 260 VNLGRDGLTHNMLELIHSHWKRQRVCKVRCKGVPTVDMDNICHHIEEKTGGKI--IHRVG 317
Query: 122 TII-MYRGKNY 131
++ ++RG+NY
Sbjct: 318 GVLYLFRGRNY 328
>gi|449432211|ref|XP_004133893.1| PREDICTED: CRS2-associated factor 1, mitochondrial-like [Cucumis
sativus]
gi|449480099|ref|XP_004155799.1| PREDICTED: LOW QUALITY PROTEIN: CRS2-associated factor 1,
mitochondrial-like [Cucumis sativus]
Length = 392
Score = 41.2 bits (95), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 57 KCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLE 116
K K + +GR G+ ++ ++H HW+ + +++ ++K + +L T G ++
Sbjct: 169 KTKRQINLGRDGLTHNMLNDIHNHWRHGEAVRIKCLGVPTVDMKNVCTQLEDKTFGKIIH 228
Query: 117 IHEENTIIMYRGKNY 131
H +++YRG+NY
Sbjct: 229 RH-GGFLVLYRGRNY 242
>gi|22329751|ref|NP_173754.2| CRS2-associated factor 2 [Arabidopsis thaliana]
gi|75173812|sp|Q9LDA9.1|CAF2P_ARATH RecName: Full=CRS2-associated factor 2, chloroplastic; AltName:
Full=Chloroplastic group IIA intron splicing facilitator
CRS2-associated factor 2; Flags: Precursor
gi|8778588|gb|AAF79596.1|AC007945_16 F28C11.4 [Arabidopsis thaliana]
gi|9295699|gb|AAF87005.1|AC005292_14 F26F24.27 [Arabidopsis thaliana]
gi|17065312|gb|AAL32810.1| Unknown protein [Arabidopsis thaliana]
gi|21387129|gb|AAM47968.1| unknown protein [Arabidopsis thaliana]
gi|332192262|gb|AEE30383.1| CRS2-associated factor 2 [Arabidopsis thaliana]
Length = 564
Score = 40.8 bits (94), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Query: 62 VPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEEN 121
V +GR G ++ +H HWK+ + KV K ++ + L TGG + IH
Sbjct: 222 VNLGRDGFTHNMLELIHSHWKRRRVCKVRCKGVPTVDMNNVCRVLEEKTGGEI--IHRVG 279
Query: 122 TII-MYRGKNY 131
++ ++RG+NY
Sbjct: 280 GVVYLFRGRNY 290
>gi|18399222|ref|NP_565462.1| CRS2-associated factor 1 [Arabidopsis thaliana]
gi|75266026|sp|Q9SL79.2|CAF1P_ARATH RecName: Full=CRS2-associated factor 1, chloroplastic; AltName:
Full=Chloroplastic group IIA intron splicing facilitator
CRS2-associated factor 1; Flags: Precursor
gi|15028051|gb|AAK76556.1| unknown protein [Arabidopsis thaliana]
gi|20197570|gb|AAD24394.2| expressed protein [Arabidopsis thaliana]
gi|28393847|gb|AAO42331.1| unknown protein [Arabidopsis thaliana]
gi|330251862|gb|AEC06956.1| CRS2-associated factor 1 [Arabidopsis thaliana]
Length = 701
Score = 40.8 bits (94), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Query: 41 EILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVK 100
E LT EE + K + +GR G+ ++ N+H WK+ + K+ K ++
Sbjct: 241 EPLTKEEVRELVTSCLKTTRQLNMGRDGLTHNMLNNIHDLWKRRRVCKIKCKGVCTVDMD 300
Query: 101 EIAAELARLTGGIVLEIHEENTIIMYRGKNY 131
+ +L GG V+ + ++RG+NY
Sbjct: 301 NVCEQLEEKIGGKVI-YRRGGVLFLFRGRNY 330
Score = 37.4 bits (85), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 21/106 (19%), Positives = 51/106 (48%), Gaps = 1/106 (0%)
Query: 26 KKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQ 85
K + P + PE LT +E + GR+ +G+ G+Y ++ N+ ++ +
Sbjct: 344 KPVAPVYPRLIQQVPEGLTRQEATNMRRKGRELMPICKLGKNGVYCDLVKNVKEAFEVCE 403
Query: 86 TLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEENTIIMYRGKNY 131
+++ + + ++I A+L L +++ E I+++RG+ +
Sbjct: 404 LVRIDCQGMKGSDFRKIGAKLKDLVPCVLVSFENEQ-ILIWRGREW 448
>gi|225425575|ref|XP_002267079.1| PREDICTED: CRS2-associated factor 2, chloroplastic [Vitis vinifera]
gi|297739063|emb|CBI28552.3| unnamed protein product [Vitis vinifera]
Length = 561
Score = 40.8 bits (94), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Query: 62 VPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEEN 121
V +GR G+ ++ +H HWK+ + KV K ++ + L TGG + IH
Sbjct: 215 VNLGRDGLTHNMLELIHSHWKRQRVCKVRCKGVPTIDMDNVCHHLEEKTGGKI--IHRVG 272
Query: 122 TII-MYRGKNY 131
++ ++RG+NY
Sbjct: 273 GVVYLFRGRNY 283
>gi|297850808|ref|XP_002893285.1| hypothetical protein ARALYDRAFT_335585 [Arabidopsis lyrata subsp.
lyrata]
gi|297339127|gb|EFH69544.1| hypothetical protein ARALYDRAFT_335585 [Arabidopsis lyrata subsp.
lyrata]
Length = 565
Score = 40.8 bits (94), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Query: 62 VPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEEN 121
V +GR G ++ +H HWK+ + KV K ++ + L TGG + IH
Sbjct: 224 VNLGRDGFTHNMLELIHSHWKRRRVCKVRCKGVPTVDMDNVCRVLEEKTGGEI--IHRVG 281
Query: 122 TII-MYRGKNY 131
++ ++RG+NY
Sbjct: 282 GVVYLFRGRNY 292
>gi|414884469|tpg|DAA60483.1| TPA: CRS2-associated factor 1, Precursor [Zea mays]
Length = 392
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 53/114 (46%), Gaps = 3/114 (2%)
Query: 26 KKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQ 85
K + P +T P LTP+E G + +G+ G+Y ++ + ++
Sbjct: 4 KPVAPVYPRLVTKVPGGLTPDEATEMRTRGHQLPPICKLGKNGVYANLVNQVREAFEACD 63
Query: 86 TLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEENTIIMYRGKNY--AQPPTE 137
++V + + ++I A+L L I+L E+ I+M+RG ++ + PP E
Sbjct: 64 LVRVDCSGLNKSDCRKIGAKLKDLVPCILLSFEFEH-ILMWRGSDWKSSLPPLE 116
>gi|168045030|ref|XP_001774982.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673729|gb|EDQ60248.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 295
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/68 (23%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 64 VGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEENTI 123
+GR G ++ ++H +WK+ Q +++ K ++ + L TGG ++ +
Sbjct: 112 LGRDGFTHNMLASVHDYWKRRQVVRIKCKGVPTVDMDNVCTVLEDKTGGKIIS-RAGGVV 170
Query: 124 IMYRGKNY 131
++RG+NY
Sbjct: 171 YLFRGRNY 178
Score = 37.7 bits (86), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 40 PEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEV 99
PE LT EE + GRK +G+ G+Y ++ ++ ++ +KV + + ++
Sbjct: 206 PEGLTVEEADSLRRRGRKIPAICHLGKNGVYLNLVRDVRNAFQADNLVKVDCEKMNTHDL 265
Query: 100 KEIAAELARLTGGIVLEIHEENTIIMYRG 128
++I A+L L ++L E I+M++G
Sbjct: 266 RKIGAKLKDLVPCVLLSFDHE-CILMWKG 293
>gi|224110940|ref|XP_002315689.1| predicted protein [Populus trichocarpa]
gi|222864729|gb|EEF01860.1| predicted protein [Populus trichocarpa]
Length = 506
Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Query: 62 VPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEEN 121
V +G G+ ++ +H HWK+ + KV K ++ + L TGG + IH
Sbjct: 161 VNLGEDGLTHNMLELVHSHWKRRRVCKVRCKGVPTVDMDNVCRHLEEKTGGKI--IHRVG 218
Query: 122 TII-MYRGKNY 131
++ ++RG+NY
Sbjct: 219 GVVYLFRGRNY 229
>gi|326432055|gb|EGD77625.1| ubiquitin-activating enzyme E1 [Salpingoeca sp. ATCC 50818]
Length = 1209
Score = 38.9 bits (89), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 48/101 (47%), Gaps = 15/101 (14%)
Query: 91 VKTFSAEEVKEIAAELARLTGGIVLEIH---EENTIIMYRGKNYA---------QPPTEI 138
K + + IA A +TG ++LE++ + + YR NY +PP
Sbjct: 919 CKMIAGRIIPAIATSTASVTGLVMLELYKLVQHKPLEAYRNANYNLGANTYFFFEPPA-- 976
Query: 139 MSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLRA 179
+ ++T S KK LD + ++ KY+ + E++L+ LRA
Sbjct: 977 -AKQLTSSTKKKLDSGSFEAAVQQFNKYLSQSEEKLQTLRA 1016
>gi|57339888|gb|AAW49931.1| hypothetical protein FTT0461 [synthetic construct]
Length = 127
Score = 38.9 bits (89), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 58 CKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEI 117
K V +G +G+ + VIL + L HQ +KV V EE ++IA+E+ + T +++I
Sbjct: 42 LKPVVLMGEKGLTENVILEIDLALASHQLIKVKVGRLPKEEKQQIASEITQATRSELVQI 101
Query: 118 HEENTIIMYR 127
N +++YR
Sbjct: 102 I-GNILVLYR 110
>gi|118497151|ref|YP_898201.1| RNA-binding protein [Francisella novicida U112]
gi|194323449|ref|ZP_03057226.1| conserved hypothetical protein [Francisella novicida FTE]
gi|208778944|ref|ZP_03246290.1| conserved hypothetical protein [Francisella novicida FTG]
gi|254372518|ref|ZP_04988007.1| hypothetical protein FTCG_00080 [Francisella tularensis subsp.
novicida GA99-3549]
gi|118423057|gb|ABK89447.1| RNA-binding protein [Francisella novicida U112]
gi|151570245|gb|EDN35899.1| hypothetical protein FTCG_00080 [Francisella novicida GA99-3549]
gi|194322304|gb|EDX19785.1| conserved hypothetical protein [Francisella tularensis subsp.
novicida FTE]
gi|208744744|gb|EDZ91042.1| conserved hypothetical protein [Francisella novicida FTG]
Length = 92
Score = 38.9 bits (89), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 58 CKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEI 117
K V +G +G+ + VIL + L HQ +KV V EE ++IA+E+ + T +++I
Sbjct: 16 LKPVVLMGEKGLTENVILEIDLALASHQLIKVKVGRLPKEEKQQIASEITQATSSELVQI 75
Query: 118 HEENTIIMYR 127
N +++YR
Sbjct: 76 I-GNILVLYR 84
>gi|254448654|ref|ZP_05062112.1| rhomboid family protein, putative [gamma proteobacterium HTCC5015]
gi|198261662|gb|EDY85949.1| rhomboid family protein, putative [gamma proteobacterium HTCC5015]
Length = 522
Score = 38.5 bits (88), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 70/153 (45%), Gaps = 14/153 (9%)
Query: 171 EQELELLRAQAETRSENRSDAAEDVQNTELDKPDFGSIPSMMECSENDPTTESLMASDSE 230
EQE++ LRAQA +S + AA + L P ++ ++ CS+ P + + +++
Sbjct: 341 EQEIQ-LRAQALEKSLDFKGAAVHYRKLWLANPSIETLAALFRCSKTSPESPAYVSAVKG 399
Query: 231 DLSDIFETDSETETEEKAELRPLYLDQFD-------KFPVQNDEEHEDFEEHLRQISIDS 283
L S+ T+ +A ++LD D K + N++ + L Q I +
Sbjct: 400 ALK------SDMATQNQALCASIFLDFLDKKWSTSNKPKLSNEQYQVGAKLLLDQDKIQA 453
Query: 284 RNAKSLGKDEDSSHFDEVDKMFLRAASLLKKQK 316
+ G + S HF++ ++ ++ + KKQK
Sbjct: 454 ADKLIAGMLKHSKHFEQAPQLAMQLSLAYKKQK 486
>gi|427737379|ref|YP_007056923.1| putative oxidoreductase, aryl-alcohol dehydrogenase like protein
[Rivularia sp. PCC 7116]
gi|427372420|gb|AFY56376.1| putative oxidoreductase, aryl-alcohol dehydrogenase like protein
[Rivularia sp. PCC 7116]
Length = 326
Score = 37.7 bits (86), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 51/104 (49%), Gaps = 14/104 (13%)
Query: 149 KALDKSKYRDGLR--AVKKYIPKLEQELELLRAQAETRSENRSDAAED------------ 194
K DKSKY G+R K+ IP + LE LRA AE+R++ + A +
Sbjct: 222 KYTDKSKYPQGIRNFLFKQLIPGAKSLLECLRAVAESRNKTMAQVAINWCICKGTIPIPG 281
Query: 195 VQNTELDKPDFGSIPSMMECSENDPTTESLMASDSEDLSDIFET 238
+N E + + G++ ++ E ++ ++D + + +IF+T
Sbjct: 282 AKNAEQARQNIGALGWELDAGEIAELDKAAASTDKKMVQNIFQT 325
>gi|356524038|ref|XP_003530640.1| PREDICTED: CRS2-associated factor 2, chloroplastic-like [Glycine
max]
Length = 593
Score = 37.7 bits (86), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Query: 62 VPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEEN 121
V +GR G+ ++ +H HWK+ + K+ ++ + + TGG + IH
Sbjct: 216 VNLGRDGLTHNMLELIHSHWKRRRVCKIRCLGVPTVDMDNVCHHIEEKTGGKI--IHRVG 273
Query: 122 TII-MYRGKNY 131
++ ++RG+NY
Sbjct: 274 GVVYLFRGRNY 284
>gi|56707603|ref|YP_169499.1| RNA-binding protein [Francisella tularensis subsp. tularensis SCHU
S4]
gi|89256880|ref|YP_514242.1| RNA-binding protein [Francisella tularensis subsp. holarctica LVS]
gi|110670074|ref|YP_666631.1| RNA-binding protein [Francisella tularensis subsp. tularensis
FSC198]
gi|115315259|ref|YP_763982.1| RNA-binding protein [Francisella tularensis subsp. holarctica
OSU18]
gi|156503055|ref|YP_001429120.1| CRS1/YhbY domain, RNA-binding protein [Francisella tularensis
subsp. holarctica FTNF002-00]
gi|187932066|ref|YP_001892051.1| RNA-binding protein [Francisella tularensis subsp. mediasiatica
FSC147]
gi|254368155|ref|ZP_04984175.1| RNA-binding protein [Francisella tularensis subsp. holarctica 257]
gi|254369754|ref|ZP_04985764.1| RNA-binding protein [Francisella tularensis subsp. holarctica
FSC022]
gi|254370121|ref|ZP_04986127.1| RNA-binding protein [Francisella tularensis subsp. tularensis
FSC033]
gi|254373979|ref|ZP_04989461.1| RNA-binding protein [Francisella novicida GA99-3548]
gi|254874424|ref|ZP_05247134.1| RNA-binding protein [Francisella tularensis subsp. tularensis
MA00-2987]
gi|290953622|ref|ZP_06558243.1| RNA-binding protein [Francisella tularensis subsp. holarctica
URFT1]
gi|379716863|ref|YP_005305199.1| RNA binding protein [Francisella tularensis subsp. tularensis
TIGB03]
gi|379725467|ref|YP_005317653.1| RNA binding protein [Francisella tularensis subsp. tularensis
TI0902]
gi|385792474|ref|YP_005825450.1| hypothetical protein [Francisella cf. novicida Fx1]
gi|385794226|ref|YP_005830632.1| hypothetical protein NE061598_02575 [Francisella tularensis subsp.
tularensis NE061598]
gi|421755092|ref|ZP_16192045.1| hypothetical protein B343_02578 [Francisella tularensis subsp.
tularensis 80700075]
gi|422939171|ref|YP_007012318.1| RNA-binding protein [Francisella tularensis subsp. holarctica
FSC200]
gi|423051252|ref|YP_007009686.1| hypothetical protein F92_08870 [Francisella tularensis subsp.
holarctica F92]
gi|54113941|gb|AAV29604.1| NT02FT1076 [synthetic construct]
gi|56604095|emb|CAG45094.1| RNA-binding protein [Francisella tularensis subsp. tularensis SCHU
S4]
gi|89144711|emb|CAJ80042.1| RNA-binding protein [Francisella tularensis subsp. holarctica LVS]
gi|110320407|emb|CAL08477.1| RNA-binding protein [Francisella tularensis subsp. tularensis
FSC198]
gi|115130158|gb|ABI83345.1| RNA-binding protein [Francisella tularensis subsp. holarctica
OSU18]
gi|134253965|gb|EBA53059.1| RNA-binding protein [Francisella tularensis subsp. holarctica 257]
gi|151568365|gb|EDN34019.1| RNA-binding protein [Francisella tularensis subsp. tularensis
FSC033]
gi|151571699|gb|EDN37353.1| RNA-binding protein [Francisella novicida GA99-3548]
gi|156253658|gb|ABU62164.1| CRS1 / YhbY domain, RNA-binding protein [Francisella tularensis
subsp. holarctica FTNF002-00]
gi|157122713|gb|EDO66842.1| RNA-binding protein [Francisella tularensis subsp. holarctica
FSC022]
gi|187712975|gb|ACD31272.1| RNA-binding protein [Francisella tularensis subsp. mediasiatica
FSC147]
gi|254840423|gb|EET18859.1| RNA-binding protein [Francisella tularensis subsp. tularensis
MA00-2987]
gi|282158761|gb|ADA78152.1| hypothetical protein NE061598_02575 [Francisella tularensis subsp.
tularensis NE061598]
gi|328676620|gb|AEB27490.1| RNA binding protein [Francisella cf. novicida Fx1]
gi|377826916|gb|AFB80164.1| RNA binding protein [Francisella tularensis subsp. tularensis
TI0902]
gi|377828540|gb|AFB78619.1| RNA binding protein [Francisella tularensis subsp. tularensis
TIGB03]
gi|407294322|gb|AFT93228.1| RNA-binding protein [Francisella tularensis subsp. holarctica
FSC200]
gi|409088966|gb|EKM89021.1| hypothetical protein B343_02578 [Francisella tularensis subsp.
tularensis 80700075]
gi|421951974|gb|AFX71223.1| hypothetical protein F92_08870 [Francisella tularensis subsp.
holarctica F92]
Length = 92
Score = 37.7 bits (86), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 58 CKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEI 117
K V +G +G+ + VIL + L HQ +KV V EE ++IA+E+ + T +++I
Sbjct: 16 LKPVVLMGEKGLTENVILEIDLALASHQLIKVKVGRLPKEEKQQIASEITQATRSELVQI 75
Query: 118 HEENTIIMYR 127
N +++YR
Sbjct: 76 I-GNILVLYR 84
>gi|153833452|ref|ZP_01986119.1| pullulanase [Vibrio harveyi HY01]
gi|148870227|gb|EDL69162.1| pullulanase [Vibrio harveyi HY01]
Length = 1328
Score = 37.4 bits (85), Expect = 9.1, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 10/73 (13%)
Query: 218 DPTTESLMASDSEDLSDIFETDSETETEEKAELRPLYLDQFDKFPVQNDEEHEDFEEHLR 277
DP + SL S + S + + DS A L+P D +D+ V+ DE+H +E HLR
Sbjct: 392 DPYSLSL--SQNSMYSQVVDLDS-------AALKPAEWDNYDRPTVEKDEDHVLYESHLR 442
Query: 278 QISI-DSRNAKSL 289
S D++ +SL
Sbjct: 443 DFSFSDTKGTQSL 455
>gi|390938937|ref|YP_006402675.1| putative RNA-binding protein containing KH domain, possibly
ribosomal protein [Desulfurococcus fermentans DSM 16532]
gi|390192044|gb|AFL67100.1| putative RNA-binding protein containing KH domain, possibly
ribosomal protein [Desulfurococcus fermentans DSM 16532]
Length = 99
Score = 37.4 bits (85), Expect = 9.2, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 42/72 (58%), Gaps = 5/72 (6%)
Query: 62 VPVGRRGIYQGVILNMHLHWKKHQTLKV-IVKTFSAEE---VKEIAAELARLTGGIVLEI 117
V +G+ G+ QG I + L +KH +K+ ++K++ E + +A E+A LTGG + E+
Sbjct: 26 VQLGKNGVTQGFIEEVRLRLRKHGVVKIRVLKSYRRSEGFDIHRLAEEIAGLTGGKIYEV 85
Query: 118 HEENTIIMYRGK 129
TI + RG+
Sbjct: 86 -RGFTITLIRGE 96
>gi|194865359|ref|XP_001971390.1| GG14458 [Drosophila erecta]
gi|190653173|gb|EDV50416.1| GG14458 [Drosophila erecta]
Length = 325
Score = 37.4 bits (85), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 232 LSDIFETDSETETEEKAELRPLYLDQFDKFPVQNDEEHEDFEEHLRQISIDSRNAKSL 289
LSDI ++D T +EKA+ RP +FD FP ++D+ E + R++S++ N L
Sbjct: 24 LSDISDSDESTSVDEKAQKRPDDYSEFDGFPFRDDD--ESLLDSSREMSVEDHNWDVL 79
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.312 0.130 0.357
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,758,108,002
Number of Sequences: 23463169
Number of extensions: 199574708
Number of successful extensions: 713356
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 247
Number of HSP's successfully gapped in prelim test: 972
Number of HSP's that attempted gapping in prelim test: 709149
Number of HSP's gapped (non-prelim): 4167
length of query: 317
length of database: 8,064,228,071
effective HSP length: 142
effective length of query: 175
effective length of database: 9,027,425,369
effective search space: 1579799439575
effective search space used: 1579799439575
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 76 (33.9 bits)