Query 021078
Match_columns 317
No_of_seqs 205 out of 723
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 12:26:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021078.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021078hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1rq8_A Conserved hypothetical 100.0 1.8E-30 6.3E-35 212.9 13.9 88 42-130 1-88 (104)
2 1jo0_A Hypothetical protein HI 100.0 3.1E-30 1.1E-34 209.1 13.0 89 42-131 2-90 (98)
3 3p04_A Uncharacterized BCR; SE 45.5 90 0.0031 24.4 7.5 56 75-132 19-77 (87)
4 3ka5_A Ribosome-associated pro 36.4 65 0.0022 24.1 5.2 46 85-131 1-49 (65)
5 3sbx_A Putative uncharacterize 36.0 36 0.0012 29.8 4.3 36 50-86 130-165 (189)
6 1nbw_B Glycerol dehydratase re 33.7 99 0.0034 25.4 6.4 75 59-134 5-84 (117)
7 2bky_A DNA/RNA-binding protein 32.8 1.8E+02 0.0062 22.9 7.8 66 59-125 9-78 (97)
8 3c1y_A DNA integrity scanning 32.3 72 0.0025 31.1 6.2 48 96-147 125-173 (377)
9 2lw1_A ABC transporter ATP-bin 30.9 31 0.001 26.4 2.7 30 157-186 21-50 (89)
10 2h9u_A DNA/RNA-binding protein 29.8 1.9E+02 0.0066 23.0 7.3 67 59-125 6-75 (102)
11 3n70_A Transport activator; si 28.8 1E+02 0.0034 24.1 5.5 65 48-115 14-81 (145)
12 2pnv_A Small conductance calci 26.0 77 0.0026 22.1 3.7 25 158-182 16-40 (43)
13 1uii_A Geminin; human, DNA rep 25.3 1.2E+02 0.004 24.0 5.1 33 146-178 36-73 (83)
14 3k2t_A LMO2511 protein; lister 24.2 52 0.0018 23.9 2.7 45 86-131 2-49 (57)
15 3qua_A Putative uncharacterize 23.4 77 0.0026 27.9 4.2 35 51-86 140-174 (199)
16 3toe_A MTH10B, DNA/RNA-binding 20.7 3.1E+02 0.011 21.6 7.6 65 59-123 4-70 (91)
No 1
>1rq8_A Conserved hypothetical protein; structural genomics, SAV1595, YHBY, UPF0044, unknown function; NMR {Staphylococcus aureus} SCOP: d.68.4.1
Probab=99.97 E-value=1.8e-30 Score=212.92 Aligned_cols=88 Identities=20% Similarity=0.365 Sum_probs=86.3
Q ss_pred CCCHHHHHHHHhccccCCCeeeeCCCCCcHHHHHHHHHHHHhCCeeeEEecCCCHHHHHHHHHHHHHHhCCeEEEEeeCc
Q 021078 42 ILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEEN 121 (317)
Q Consensus 42 ~LT~kERk~LRklAhkLKPvV~IGK~GVTdgVIeeI~~aLk~HELVKVKv~~~~~ed~keiAeeLe~~SGgeLVqV~IG~ 121 (317)
|||++||++||++||+|+|+|+|||+|||++|+++|+.+|++||||||+|.++++++++++|++|++.|||++||+ ||+
T Consensus 1 mLt~kqr~~LR~~ah~Lkpvv~IGK~GlTe~vi~ei~~aL~~hELIKVkvl~~~~~d~~e~a~~la~~t~a~vVq~-IG~ 79 (104)
T 1rq8_A 1 MLTGKQKRYLRSLAHNIDPIFQIGKGGINENMIKQIDDTLENRELIKVHVLQNNFDDKKELAETLSEATRSELVQV-IGS 79 (104)
T ss_dssp CCCHHHHHHHHHHTTSSCCSCEECSSSCCHHHHHHHHHHHHHSSEEEEEECCCCHHHHHHHHHHHHHHHTEEEEEE-ETT
T ss_pred CCCHHHHHHHHHHhcCCCCeEEECCCCCCHHHHHHHHHHHHHCCcEEEEEeCCCHHHHHHHHHHHHHHhCCEEEEE-ECC
Confidence 6999999999999999999999999999999999999999999999999999999999999999999999999995 999
Q ss_pred EEEEEeCCC
Q 021078 122 TIIMYRGKN 130 (317)
Q Consensus 122 tIILYRgkN 130 (317)
++||||++.
T Consensus 80 ~~VLYR~~~ 88 (104)
T 1rq8_A 80 MIVIYRESK 88 (104)
T ss_dssp EEEEEECCC
T ss_pred EEEEEeCCC
Confidence 999999976
No 2
>1jo0_A Hypothetical protein HI1333; structural genomics, YHBY_HAEI structure 2 function project, S2F, unknown function; 1.37A {Haemophilus influenzae} SCOP: d.68.4.1 PDB: 1ln4_A
Probab=99.97 E-value=3.1e-30 Score=209.13 Aligned_cols=89 Identities=18% Similarity=0.304 Sum_probs=86.3
Q ss_pred CCCHHHHHHHHhccccCCCeeeeCCCCCcHHHHHHHHHHHHhCCeeeEEecCCCHHHHHHHHHHHHHHhCCeEEEEeeCc
Q 021078 42 ILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEEN 121 (317)
Q Consensus 42 ~LT~kERk~LRklAhkLKPvV~IGK~GVTdgVIeeI~~aLk~HELVKVKv~~~~~ed~keiAeeLe~~SGgeLVqV~IG~ 121 (317)
.||++||++||++||+|+|+|+||++|||++|+.+|+.||++||||||+|.++++++++++|++|++.|||++||+ ||+
T Consensus 2 ~Lt~kqr~~Lr~~ah~l~pvv~IGk~GlT~~vi~ei~~aL~~~ELIKVkvl~~~~~~~~e~a~~la~~t~a~~Vq~-IG~ 80 (98)
T 1jo0_A 2 TLSTKQKQFLKGLAHHLNPVVMLGGNGLTEGVLAEIENALNHHELIKVKVAGADRETKQLIINAIVRETKAAQVQT-IGH 80 (98)
T ss_dssp CCCHHHHHHHHHHHTTBCCSEEECTTCSCHHHHHHHHHHHHHHSEEEEEETTCCHHHHHHHHHHHHHHHCCEEEEE-ETT
T ss_pred CCCHHHHHHHHHHhcCCCCeEEECCCCCCHHHHHHHHHHHHHCCeEEEEEeCCCHHHHHHHHHHHHHHhCCEEEEE-ECC
Confidence 6999999999999999999999999999999999999999999999999999999999999999999999999995 999
Q ss_pred EEEEEeCCCC
Q 021078 122 TIIMYRGKNY 131 (317)
Q Consensus 122 tIILYRgkNY 131 (317)
++||||++..
T Consensus 81 ~~vLyR~~~~ 90 (98)
T 1jo0_A 81 ILVLYRPSEE 90 (98)
T ss_dssp EEEEECCCSS
T ss_pred EEEEEccCCC
Confidence 9999998743
No 3
>3p04_A Uncharacterized BCR; SEPF homolog, DUF552, PSI-biology, NESG, structural genomics structure initiative; 2.20A {Corynebacterium glutamicum}
Probab=45.50 E-value=90 Score=24.41 Aligned_cols=56 Identities=11% Similarity=0.024 Sum_probs=48.8
Q ss_pred HHHHHHHHhCCeeeEEecCCCHHHHHHHHHHHHH---HhCCeEEEEeeCcEEEEEeCCCCC
Q 021078 75 LNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELAR---LTGGIVLEIHEENTIIMYRGKNYA 132 (317)
Q Consensus 75 eeI~~aLk~HELVKVKv~~~~~ed~keiAeeLe~---~SGgeLVqV~IG~tIILYRgkNY~ 132 (317)
.+|-++|+....|-|.+.....++.+.+.+.++- ..+|.+.. +|..+.|+=|+|..
T Consensus 19 ~~I~d~Lr~~~~VvvNL~~ld~~~AqRivDF~sG~~yal~G~i~k--I~~~IFl~~P~~V~ 77 (87)
T 3p04_A 19 QVIGGAFRDGDAVVFDMSLLSREEARRIVDFAAGLCFALHGKMQK--IDSVTFAVVPELSN 77 (87)
T ss_dssp HHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHHHHHTTCEEEE--EETTEEEEECCCCC
T ss_pred HHHHHHHHCCCEEEEECCCCCHHHHHHHHHHhccceEEeccEEEE--EcCCEEEEECCCeE
Confidence 5789999999999999999999999999998765 66899885 68988899888864
No 4
>3ka5_A Ribosome-associated protein Y (PSRP-1); structural genomics, PSI-2, protein structure initiative; 1.80A {Clostridium acetobutylicum}
Probab=36.36 E-value=65 Score=24.13 Aligned_cols=46 Identities=15% Similarity=0.203 Sum_probs=33.9
Q ss_pred CeeeEEecCCCHHHHHHHHHHHHHHhCCeEEEEe---eCcEEEEEeCCCC
Q 021078 85 QTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIH---EENTIIMYRGKNY 131 (317)
Q Consensus 85 ELVKVKv~~~~~ed~keiAeeLe~~SGgeLVqV~---IG~tIILYRgkNY 131 (317)
++|+.|.-...+..+.+++.+++-. |-.+.=.+ -|.+-|+||.++.
T Consensus 1 ~iVr~K~~~~kpMsveEAv~qmel~-gh~F~vF~n~etg~~nVVYRR~dG 49 (65)
T 3ka5_A 1 EIVKTKRFAIKPMSEEEAVLEMELL-GHNFFVFQNGDSNEVNVVYKRKDG 49 (65)
T ss_dssp CEEEEECSCCSCBCHHHHHHHHHHH-TCSEEEEEETTTTEEEEEEECTTS
T ss_pred CeEEEEeecCCCCCHHHHHHHHHhC-CCcEEEEEeCCCCCEEEEEEeCCC
Confidence 4677777777788899999999875 44444243 4889999998754
No 5
>3sbx_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: AMP; 2.50A {Mycobacterium marinum M}
Probab=35.96 E-value=36 Score=29.81 Aligned_cols=36 Identities=14% Similarity=0.076 Sum_probs=28.2
Q ss_pred HHHhccccCCCeeeeCCCCCcHHHHHHHHHHHHhCCe
Q 021078 50 YFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQT 86 (317)
Q Consensus 50 ~LRklAhkLKPvV~IGK~GVTdgVIeeI~~aLk~HEL 86 (317)
-+.++|.+-||++.+|.+|.++.++.-++ ++-....
T Consensus 130 t~~qlg~~~kPvvlln~~gfw~~l~~~l~-~~~~~Gf 165 (189)
T 3sbx_A 130 TEGYLGMHDKSIVVLDPWGHFDGLRAWLS-ELADTGY 165 (189)
T ss_dssp HHHHTTSCCCCEEEECTTCTTHHHHHHHH-HHHHTTS
T ss_pred HHHHhcccCCCEEEecCCccchHHHHHHH-HHHHCCC
Confidence 34567778899999999999999999887 4444443
No 6
>1nbw_B Glycerol dehydratase reactivase beta subunit; molecular chaperone, actin-like ATPase domain, beta/BETA/alpha swiveling domain, hydrolase; 2.40A {Klebsiella pneumoniae} SCOP: c.51.3.2
Probab=33.72 E-value=99 Score=25.43 Aligned_cols=75 Identities=15% Similarity=0.093 Sum_probs=50.4
Q ss_pred CCeeeeCC--CCCcHHHHHHHHHHHHhCCeeeEEecCCCH-HHHHHHHHHHHHHhCCeE-EEE-eeCcEEEEEeCCCCCC
Q 021078 59 KNYVPVGR--RGIYQGVILNMHLHWKKHQTLKVIVKTFSA-EEVKEIAAELARLTGGIV-LEI-HEENTIIMYRGKNYAQ 133 (317)
Q Consensus 59 KPvV~IGK--~GVTdgVIeeI~~aLk~HELVKVKv~~~~~-ed~keiAeeLe~~SGgeL-VqV-~IG~tIILYRgkNY~~ 133 (317)
+|.|.|.- ++....++.+|-.-++...+ ...+..... .++..+|..-+..|+--| |.+ ..|.++|=||.-...+
T Consensus 5 ~PaI~i~~~~~~~~~~~l~~vl~GIEEEGi-p~~v~~~~~~~d~~~lA~~AA~~S~lgVGIGi~~~G~~vih~~~L~~~~ 83 (117)
T 1nbw_B 5 PPGVRLFYDPRGHHAGAINELCWGLEEQGV-PCQTITYDGGGDAAALGALAARSSPLRVGIGLSASGEIALTHAQLPADA 83 (117)
T ss_dssp CCCEEEEECTTSCCHHHHHHHHHHHHHTTC-CEEEEECTTCCCHHHHHHHHHHHCTTSEEEEECTTSEEEEEETTSCTTC
T ss_pred CCEEEEEeCCCCCCHHHHHHHHhhhhhcCC-CeEEEEeCCCCCHHHHHHHHHHhCCCceEEEECCCCCEEEEcCCCCCCC
Confidence 67777776 67778899999988887664 333333332 578888888888887433 332 3567888888655445
Q ss_pred C
Q 021078 134 P 134 (317)
Q Consensus 134 P 134 (317)
|
T Consensus 84 p 84 (117)
T 1nbw_B 84 P 84 (117)
T ss_dssp C
T ss_pred C
Confidence 4
No 7
>2bky_A DNA/RNA-binding protein ALBA 1; archaeal DNA binding protein, DNA condensation, DNA-binding, DNA binding protein; 1.70A {Sulfolobus solfataricus} SCOP: d.68.6.1 PDB: 1h0x_A* 1h0y_A* 1y9x_A
Probab=32.77 E-value=1.8e+02 Score=22.91 Aligned_cols=66 Identities=11% Similarity=0.150 Sum_probs=48.0
Q ss_pred CCeeeeCCCCCcHHHHHHHHHHHHh-CCeeeEEecCCCHHHHHHHHHHHHHHhCC--e-EEEEeeCcEEEE
Q 021078 59 KNYVPVGRRGIYQGVILNMHLHWKK-HQTLKVIVKTFSAEEVKEIAAELARLTGG--I-VLEIHEENTIIM 125 (317)
Q Consensus 59 KPvV~IGK~GVTdgVIeeI~~aLk~-HELVKVKv~~~~~ed~keiAeeLe~~SGg--e-LVqV~IG~tIIL 125 (317)
...|.||+.|+..=|...+ ..|.. +.=|.|+-.+..-...-.+|+.|.....+ . +..+.+|...+-
T Consensus 9 ~n~I~V~~k~v~~YV~~a~-~ll~~g~~eV~ikA~G~AIskAV~vaeilk~r~~~~~l~~~~i~i~s~~i~ 78 (97)
T 2bky_A 9 SNVVLIGKKPVMNYVLAAL-TLLNQGVSEIVIKARGRAISKAVDTVEIVRNRFLPDKIEIKEIRVGSQVVT 78 (97)
T ss_dssp CCEEECCSSCHHHHHHHHH-HHHHTTCCEEEEEEETTHHHHHHHHHHHHHHHTSTTTEEEEEEEEEEEEEE
T ss_pred CCEEEEcCcCHHHHHHHHH-HHHhCCCCEEEEEEechHHHHHHHHHHHHHHhccCCceEEEEEEeeeEEEe
Confidence 4789999999665555554 45554 77888988888877888899999998855 4 344557766653
No 8
>3c1y_A DNA integrity scanning protein DISA; DNA damage, DNA repair, DNA-binding, DNA binding protein; HET: DNA 2BA; 2.10A {Thermotoga maritima} PDB: 3c1z_A* 3c21_A* 3c23_A*
Probab=32.32 E-value=72 Score=31.09 Aligned_cols=48 Identities=21% Similarity=0.263 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHhCCeEEEEe-eCcEEEEEeCCCCCCCCCCcCCcccccch
Q 021078 96 AEEVKEIAAELARLTGGIVLEIH-EENTIIMYRGKNYAQPPTEIMSPRITLSR 147 (317)
Q Consensus 96 ~ed~keiAeeLe~~SGgeLVqV~-IG~tIILYRgkNY~~P~~~i~~P~~lLtK 147 (317)
...++.+|.-|++.|+|.+|-|. ...+|-+|++-...++ ..|..++++
T Consensus 125 lGtRHRAA~gise~tdaivIvVSEetG~Isl~~~G~~~~~----~~~~~l~~~ 173 (377)
T 3c1y_A 125 TGTRHRTAERLAKQTGKVVIAVSRRRNIISLYYKNYKYVV----NQVDFLISK 173 (377)
T ss_dssp CSHHHHHHHHHHHHHSSEEEEECSSCCCEEEECSSCEEEE----CCHHHHHHH
T ss_pred CcHHHHHHHHHHHhcCCEEEEEEccCCcEEEEECCEEEec----CCHHHHHHH
Confidence 45789999999999999999763 3445555554332222 345555544
No 9
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=30.94 E-value=31 Score=26.44 Aligned_cols=30 Identities=27% Similarity=0.354 Sum_probs=25.4
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 021078 157 RDGLRAVKKYIPKLEQELELLRAQAETRSE 186 (317)
Q Consensus 157 ~qr~~sl~~~i~~le~~i~~l~~~~~~~~~ 186 (317)
...++.|-.-|..||.+|..|..+|+..+-
T Consensus 21 qrEle~le~~Ie~LE~~i~~le~~ladp~~ 50 (89)
T 2lw1_A 21 QRELEQLPQLLEDLEAKLEALQTQVADASF 50 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSTTG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 344889999999999999999999987543
No 10
>2h9u_A DNA/RNA-binding protein ALBA 2; archaea, DNA binding protein, structural G NPPSFA, national project on protein structural and function analyses; 2.00A {Aeropyrum pernix} PDB: 3u6y_A*
Probab=29.83 E-value=1.9e+02 Score=22.99 Aligned_cols=67 Identities=12% Similarity=0.131 Sum_probs=51.2
Q ss_pred CCeeeeCCCCCcHHHHHHHHHHHHh-CCeeeEEecCCCHHHHHHHHHHHHHHh-CCeEEE-EeeCcEEEE
Q 021078 59 KNYVPVGRRGIYQGVILNMHLHWKK-HQTLKVIVKTFSAEEVKEIAAELARLT-GGIVLE-IHEENTIIM 125 (317)
Q Consensus 59 KPvV~IGK~GVTdgVIeeI~~aLk~-HELVKVKv~~~~~ed~keiAeeLe~~S-GgeLVq-V~IG~tIIL 125 (317)
...|.||+.|+..-|...+...|.. +.=|.|+-.|..-...-.+|+.|.+.. +|.-|| +.+|...|-
T Consensus 6 ~n~I~V~~k~~~nyV~~a~~~ll~~g~~eV~ikA~G~AIskAV~vaEilk~r~~~gl~~q~i~i~s~~i~ 75 (102)
T 2h9u_A 6 APEVRIGRKPVMNYVLAILTTLMEQGTNQVVVKARGRNINRAVDAVEIVRKRFAKNIEIKDIKIDSQEIE 75 (102)
T ss_dssp CCEEECCSSCHHHHHHHHHHHHTSTTCCEEEEEEETTHHHHHHHHHHHHHHHTTTTEEEEEEEEEEEEEE
T ss_pred CCEEEEcCCCHHHHHHHHHHHHHhCCCCEEEEEEechhhhHHHHHHHHHHHhccCCceEEEEEEeeEEEe
Confidence 4789999999988888877456654 678888888888778888999999998 575534 356666554
No 11
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=28.80 E-value=1e+02 Score=24.07 Aligned_cols=65 Identities=11% Similarity=0.008 Sum_probs=41.1
Q ss_pred HHHHHhccccCCCeeeeCCCCCcHHHHHH-HHHHH--HhCCeeeEEecCCCHHHHHHHHHHHHHHhCCeEE
Q 021078 48 HFYFLKMGRKCKNYVPVGRRGIYQGVILN-MHLHW--KKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVL 115 (317)
Q Consensus 48 Rk~LRklAhkLKPvV~IGK~GVTdgVIee-I~~aL--k~HELVKVKv~~~~~ed~keiAeeLe~~SGgeLV 115 (317)
+..++..+..-.|++..|..|.--..+.. ||.+. ....+| |.|...... ......++...||.|+
T Consensus 14 ~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~--~~~~~~~~~a~~g~l~ 81 (145)
T 3n70_A 14 RRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA--PQLNDFIALAQGGTLV 81 (145)
T ss_dssp HHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS--SCHHHHHHHHTTSCEE
T ss_pred HHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc--hhhhcHHHHcCCcEEE
Confidence 34455567777899999999999887654 55443 245688 998754322 2333445555555554
No 12
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=26.04 E-value=77 Score=22.07 Aligned_cols=25 Identities=28% Similarity=0.291 Sum_probs=22.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHh
Q 021078 158 DGLRAVKKYIPKLEQELELLRAQAE 182 (317)
Q Consensus 158 qr~~sl~~~i~~le~~i~~l~~~~~ 182 (317)
-|.+.|...|..||..++.|..++.
T Consensus 16 ~r~e~LE~Ri~~LE~KLd~L~~~l~ 40 (43)
T 2pnv_A 16 ERSEDFEKRIVTLETKLETLIGSIH 40 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788999999999999999998875
No 13
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=25.33 E-value=1.2e+02 Score=23.99 Aligned_cols=33 Identities=24% Similarity=0.289 Sum_probs=19.9
Q ss_pred chHHHHhHHHHH-----hhHHHHHHHHHHHHHHHHHHH
Q 021078 146 SRKKALDKSKYR-----DGLRAVKKYIPKLEQELELLR 178 (317)
Q Consensus 146 tKrkAL~rS~~~-----qr~~sl~~~i~~le~~i~~l~ 178 (317)
.||+||.-++.. +++++|.--|..+.++.+.|+
T Consensus 36 ~RR~AL~eaL~EN~~Lh~~ie~l~eEi~~lk~en~eL~ 73 (83)
T 1uii_A 36 KRRKALYEALKENEKLHKEIEQKDNEIARLKKENKELA 73 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 579999999876 344444444444444444444
No 14
>3k2t_A LMO2511 protein; listeria monocytogenes,binding, structural genomics, PSI-2, protein structure initiative; 2.40A {Listeria monocytogenes}
Probab=24.17 E-value=52 Score=23.91 Aligned_cols=45 Identities=13% Similarity=0.169 Sum_probs=29.0
Q ss_pred eeeEEecCCCHHHHHHHHHHHHHHhCCeEEEEe---eCcEEEEEeCCCC
Q 021078 86 TLKVIVKTFSAEEVKEIAAELARLTGGIVLEIH---EENTIIMYRGKNY 131 (317)
Q Consensus 86 LVKVKv~~~~~ed~keiAeeLe~~SGgeLVqV~---IG~tIILYRgkNY 131 (317)
+|+.|--...+..+.+++.+++-.-.--+| .+ -|.+-|+||.++.
T Consensus 2 ivr~K~~~~kpmsveEAv~qmel~gh~F~v-F~n~~t~~~nVvYrR~dG 49 (57)
T 3k2t_A 2 IVRTKQFSLKPMDSEEAVLQMNLLGHSFYV-YTDAETNGTNIVYSRKDG 49 (57)
T ss_dssp CCCCCC---CCBCHHHHHHHHHHHTCSEEE-EEBSSSCCEEEEEECTTS
T ss_pred eEEEEeccCCCCCHHHHHHHHHhCCCcEEE-EEcCCCCCEEEEEEeCCC
Confidence 445555455567788888888875444444 32 4899999998754
No 15
>3qua_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium smegmatis str}
Probab=23.38 E-value=77 Score=27.88 Aligned_cols=35 Identities=14% Similarity=0.120 Sum_probs=27.8
Q ss_pred HHhccccCCCeeeeCCCCCcHHHHHHHHHHHHhCCe
Q 021078 51 FLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQT 86 (317)
Q Consensus 51 LRklAhkLKPvV~IGK~GVTdgVIeeI~~aLk~HEL 86 (317)
+.++|.+-||++.+|.+|.++.++.-++ ++-....
T Consensus 140 ~~qlg~~~kPvvlln~~gfw~~l~~~l~-~~~~~Gf 174 (199)
T 3qua_A 140 AGYLGMHDKPLILLDPFGHYDGLLTWLR-GLVPTGY 174 (199)
T ss_dssp HHHTTSCCCCEEEECTTSTTHHHHHHHH-HTTTTTS
T ss_pred HHHhccCCCCEEEEcCCccchHHHHHHH-HHHHCCC
Confidence 5567777899999999999999999886 5544443
No 16
>3toe_A MTH10B, DNA/RNA-binding protein ALBA; SAC10B family, alpha/beta mixed, homodimer, unknown function; 2.20A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=20.71 E-value=3.1e+02 Score=21.57 Aligned_cols=65 Identities=9% Similarity=0.021 Sum_probs=48.2
Q ss_pred CCeeeeCCCCCcHHHHHHHHHHHHhCCeeeEEecCCCHHHHHHHHHHHHHHhCC--eEEEEeeCcEE
Q 021078 59 KNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGG--IVLEIHEENTI 123 (317)
Q Consensus 59 KPvV~IGK~GVTdgVIeeI~~aLk~HELVKVKv~~~~~ed~keiAeeLe~~SGg--eLVqV~IG~tI 123 (317)
..+|.||+..+..-|+..+.+-=+.+.=|.|+-.+..-...-.+|+.|...... .+..+.+|...
T Consensus 4 ~~vv~vg~Kpv~~YV~~~i~~~n~g~~eV~ikA~G~aIskAVdvaei~k~R~~~~v~v~~I~I~se~ 70 (91)
T 3toe_A 4 ENVVYIGNKPVMNYVLAVVTQMNGGTSEVILKARGIAISRAVDVAEIVRNRFIPDIQIENIDICTEE 70 (91)
T ss_dssp -CCEECCSSCHHHHHHHHHHHHHTTCCEEEEEEETTHHHHHHHHHHHHHHHTCTTCEEEEEEEEEEE
T ss_pred cCEEEECCCcHHHHHHHHHHHHhCCCCEEEEEEehhHHHHHHHHHHHHHHhccCCcEEEEEEeeeEE
Confidence 468999999999999999876434578888888888777778889999877653 33344455443
Done!