Query 021079
Match_columns 317
No_of_seqs 226 out of 1257
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 07:26:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021079.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021079hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03193 beta-1,3-galactosyltr 100.0 4.3E-82 9.4E-87 616.0 28.3 302 6-317 11-323 (408)
2 KOG2288 Galactosyltransferases 100.0 1.6E-55 3.5E-60 403.9 17.2 185 130-317 8-193 (274)
3 PLN03133 beta-1,3-galactosyltr 100.0 3.5E-44 7.5E-49 367.3 21.1 177 129-315 381-558 (636)
4 KOG2287 Galactosyltransferases 100.0 4.5E-43 9.7E-48 340.5 19.7 176 132-316 94-272 (349)
5 PF01762 Galactosyl_T: Galacto 100.0 3.1E-42 6.6E-47 307.4 14.7 162 147-316 1-166 (195)
6 PTZ00210 UDP-GlcNAc-dependent 100.0 2.3E-30 5.1E-35 250.3 15.3 170 128-316 75-267 (382)
7 PF13334 DUF4094: Domain of un 100.0 7.7E-30 1.7E-34 205.2 6.2 91 12-111 1-95 (95)
8 PF02434 Fringe: Fringe-like; 99.6 5.8E-15 1.3E-19 137.9 9.5 155 134-314 7-164 (252)
9 KOG2246 Galactosyltransferases 99.4 1.7E-12 3.7E-17 127.3 10.9 140 128-314 86-231 (364)
10 PLN03153 hypothetical protein; 98.5 7.4E-07 1.6E-11 90.5 12.5 151 130-316 119-280 (537)
11 KOG3708 Uncharacterized conser 96.3 0.012 2.6E-07 60.2 7.6 84 209-316 73-160 (681)
12 PF00535 Glycos_transf_2: Glyc 94.2 0.99 2.1E-05 36.6 11.4 135 171-313 27-168 (169)
13 PF01755 Glyco_transf_25: Glyc 93.2 1.7 3.7E-05 38.2 11.9 93 137-246 4-101 (200)
14 PF13641 Glyco_tranf_2_3: Glyc 92.5 3 6.6E-05 36.6 12.5 132 172-313 31-174 (228)
15 cd04192 GT_2_like_e Subfamily 92.2 2.1 4.6E-05 37.3 10.9 135 172-313 29-170 (229)
16 TIGR03469 HonB hopene-associat 92.2 7.8 0.00017 38.1 16.0 84 171-257 70-160 (384)
17 TIGR03472 HpnI hopanoid biosyn 91.6 3.2 6.9E-05 40.6 12.5 110 133-256 41-152 (373)
18 cd06423 CESA_like CESA_like is 91.6 2.1 4.5E-05 34.5 9.6 94 221-314 69-170 (180)
19 cd04187 DPM1_like_bac Bacteria 88.8 3.8 8.3E-05 34.8 9.3 134 170-314 28-163 (181)
20 cd02520 Glucosylceramide_synth 88.6 12 0.00025 32.5 12.4 79 172-255 31-111 (196)
21 cd02525 Succinoglycan_BP_ExoA 88.3 15 0.00034 32.2 13.2 88 170-266 30-118 (249)
22 cd04179 DPM_DPG-synthase_like 84.1 7 0.00015 32.9 8.4 133 171-313 28-166 (185)
23 cd06532 Glyco_transf_25 Glycos 82.7 10 0.00022 31.4 8.6 96 137-246 2-98 (128)
24 TIGR01556 rhamnosyltran L-rham 81.1 25 0.00054 32.4 11.5 57 198-256 43-99 (281)
25 cd04196 GT_2_like_d Subfamily 80.5 22 0.00047 30.4 10.3 133 171-314 27-168 (214)
26 cd02526 GT2_RfbF_like RfbF is 79.8 32 0.00069 30.2 11.3 52 199-252 46-97 (237)
27 cd02510 pp-GalNAc-T pp-GalNAc- 79.5 54 0.0012 30.6 14.6 40 222-261 75-114 (299)
28 PRK10714 undecaprenyl phosphat 79.2 36 0.00078 32.9 12.3 134 170-314 37-173 (325)
29 cd06433 GT_2_WfgS_like WfgS an 78.9 9 0.0002 32.2 7.2 89 220-313 65-157 (202)
30 cd04184 GT2_RfbC_Mx_like Myxoc 78.3 41 0.0009 28.6 13.7 35 221-255 74-108 (202)
31 PF13506 Glyco_transf_21: Glyc 78.2 4.4 9.5E-05 35.7 5.2 92 215-313 16-116 (175)
32 COG1216 Predicted glycosyltran 77.4 10 0.00022 36.0 7.7 63 199-263 55-117 (305)
33 cd04186 GT_2_like_c Subfamily 73.2 47 0.001 26.8 12.1 29 229-257 73-101 (166)
34 cd06434 GT2_HAS Hyaluronan syn 73.1 51 0.0011 28.8 10.7 75 172-256 29-103 (235)
35 cd02514 GT13_GLCNAC-TI GT13_GL 72.6 10 0.00022 37.4 6.5 83 221-313 88-174 (334)
36 cd04185 GT_2_like_b Subfamily 72.0 62 0.0014 27.7 12.9 79 172-256 27-105 (202)
37 PRK11204 N-glycosyltransferase 72.0 81 0.0018 30.9 12.9 68 188-260 97-164 (420)
38 cd06435 CESA_NdvC_like NdvC_li 70.5 21 0.00046 31.5 7.7 36 221-256 73-110 (236)
39 cd06442 DPM1_like DPM1_like re 70.2 29 0.00063 30.1 8.4 84 229-314 77-167 (224)
40 TIGR03111 glyc2_xrt_Gpos1 puta 69.6 80 0.0017 31.7 12.3 41 221-261 122-162 (439)
41 cd06421 CESA_CelA_like CESA_Ce 62.8 55 0.0012 28.5 8.7 39 222-260 76-114 (234)
42 cd04188 DPG_synthase DPG_synth 62.7 98 0.0021 26.8 10.3 89 170-266 29-119 (211)
43 COG1215 Glycosyltransferases, 54.7 79 0.0017 30.8 9.1 132 172-314 85-230 (439)
44 PF13632 Glyco_trans_2_3: Glyc 53.2 26 0.00057 30.0 4.9 77 233-313 1-87 (193)
45 PRK14583 hmsR N-glycosyltransf 49.4 2.8E+02 0.0062 27.7 15.4 82 171-260 104-185 (444)
46 COG4092 Predicted glycosyltran 48.6 88 0.0019 30.4 7.8 81 168-253 35-117 (346)
47 cd06420 GT2_Chondriotin_Pol_N 47.5 65 0.0014 26.8 6.4 34 222-255 71-104 (182)
48 cd06438 EpsO_like EpsO protein 46.5 1.8E+02 0.0039 24.6 10.3 89 220-312 70-169 (183)
49 PHA01631 hypothetical protein 44.9 53 0.0012 29.4 5.4 76 215-314 53-131 (176)
50 PRK05454 glucosyltransferase M 43.5 4E+02 0.0086 29.0 12.8 128 130-267 121-255 (691)
51 PF03071 GNT-I: GNT-I family; 43.3 2.1E+02 0.0045 29.4 10.1 88 218-314 175-270 (434)
52 cd02522 GT_2_like_a GT_2_like_ 42.6 1.2E+02 0.0026 26.1 7.5 42 223-265 65-106 (221)
53 cd06439 CESA_like_1 CESA_like_ 39.9 2.6E+02 0.0057 24.6 14.8 35 222-256 101-135 (251)
54 smart00786 SHR3_chaperone ER m 39.9 25 0.00053 32.2 2.6 29 12-40 6-40 (196)
55 PF10111 Glyco_tranf_2_2: Glyc 38.7 3.3E+02 0.0071 25.3 10.5 78 169-253 32-111 (281)
56 PF08229 SHR3_chaperone: ER me 37.7 20 0.00043 32.8 1.6 29 12-40 6-40 (196)
57 cd04190 Chitin_synth_C C-termi 36.9 67 0.0014 29.1 5.1 32 229-260 72-103 (244)
58 PF11119 DUF2633: Protein of u 36.9 38 0.00083 25.2 2.7 28 1-31 1-28 (59)
59 cd06427 CESA_like_2 CESA_like_ 36.7 3E+02 0.0066 24.4 13.0 36 221-256 75-110 (241)
60 PF06306 CgtA: Beta-1,4-N-acet 36.0 2.3E+02 0.0049 28.2 8.6 78 177-255 117-200 (347)
61 cd06437 CESA_CaSu_A2 Cellulose 35.7 3E+02 0.0066 24.1 12.7 34 222-255 79-112 (232)
62 PF04666 Glyco_transf_54: N-Ac 35.4 2.8E+02 0.006 26.9 9.2 28 230-257 169-199 (297)
63 cd04195 GT2_AmsE_like GT2_AmsE 35.1 2.8E+02 0.006 23.4 11.8 87 172-266 30-118 (201)
64 cd00761 Glyco_tranf_GTA_type G 33.8 2.1E+02 0.0047 21.8 8.7 34 222-255 69-102 (156)
65 PF06072 Herpes_US9: Alphaherp 31.6 48 0.001 24.7 2.5 17 16-32 42-58 (60)
66 PF03742 PetN: PetN ; InterPr 29.2 58 0.0013 20.8 2.2 23 11-33 4-26 (29)
67 cd06913 beta3GnTL1_like Beta 1 27.3 4.1E+02 0.0089 23.0 11.3 43 223-265 77-119 (219)
68 cd04191 Glucan_BSP_ModH Glucan 26.7 2.7E+02 0.0059 25.8 7.4 49 212-260 76-125 (254)
69 PLN03181 glycosyltransferase; 26.6 3.9E+02 0.0084 27.6 8.7 48 196-243 161-211 (453)
70 PLN02726 dolichyl-phosphate be 26.6 4.6E+02 0.01 23.3 13.1 87 171-265 40-129 (243)
71 PF02485 Branch: Core-2/I-Bran 26.6 4.7E+02 0.01 23.5 10.1 122 191-315 44-172 (244)
72 PF09964 DUF2198: Uncharacteri 25.0 51 0.0011 25.6 1.8 22 13-34 46-67 (74)
73 PF13704 Glyco_tranf_2_4: Glyc 23.5 3.3E+02 0.0072 20.6 7.4 71 170-247 17-88 (97)
74 PF00483 NTP_transferase: Nucl 20.7 3.3E+02 0.0072 24.1 6.6 92 217-314 85-191 (248)
75 PF11772 EpuA: DNA-directed RN 20.6 86 0.0019 22.2 2.1 16 16-31 4-19 (47)
76 PF09258 Glyco_transf_64: Glyc 20.1 1.2E+02 0.0025 28.4 3.5 38 229-266 74-111 (247)
No 1
>PLN03193 beta-1,3-galactosyltransferase; Provisional
Probab=100.00 E-value=4.3e-82 Score=616.02 Aligned_cols=302 Identities=64% Similarity=1.032 Sum_probs=275.9
Q ss_pred CCcccccchhHHHHHHHHHHHHHHHhcCCCCCCCCCCCCcccccccccceeecccccccc-------cCCchHHHHHHHh
Q 021079 6 STTTIISTKWIPFVCLFCFALGILFSNLTWNPPESDGRPSLNVRRREQQVAVASTDCAKK-------AFQDQDVAKEVLK 78 (317)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~ 78 (317)
++|+.||+||+++||++|||+|+|||+|||..||+++ +..++.+++++++++++||+.| +++++|+|+||++
T Consensus 11 ~~~~~~~~~~~~~~~~~~f~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~ 89 (408)
T PLN03193 11 SSRSVVSRKWTLLLCLGCFCAGMLFTDRMWTIPESKG-ISRTTVTEAERLKLVSEGCDPKTLYQKEVKRDSKDIIGEVSK 89 (408)
T ss_pred cccccccHHHHHHHHHHHHHHHHhhccccccCCcccc-ccccccchhhhhhhhccccccccccccccccchhHHHHHHhh
Confidence 4588999999999999999999999999999999887 5566668899999999999853 3589999999999
Q ss_pred hhccccCCCcccchhhhhhHHHHhhhhhhcccCCCCCCCCCcccc----cCCCCCCCCeEEEEEEECCCCCHHHHHHHHH
Q 021079 79 TRGAIHDGSVESDRTLDKTIGQLQMELAASRSGREMPGLESSAAN----ASTNSRRPKVFVVIGINTAFSSRKRRDSVRD 154 (317)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~le~el~~a~~~~~~~~~~~~~~~----~~~~~~~~~~~lvI~I~S~~~~~~rR~aIR~ 154 (317)
||++|+ +|||+|+.||||||+|++.++.. .++.|.+ ......++++++||+|+|+|+|++||++||+
T Consensus 90 t~~~~~--------~~~~~~~~le~el~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~LvIgI~Sap~~~~RR~AIR~ 160 (408)
T PLN03193 90 THNAIQ--------TLDKTISNLEMELAAARAAQESI-LNGSPISEDLKKTQSSGKRRYLMVVGINTAFSSRKRRDSVRA 160 (408)
T ss_pred HHHHHH--------HHhhhhhHHhHHHHHHHhhhhhh-ccCCCccccccccCCCCcceEEEEEEEeCCCCCHHHHHHHHH
Confidence 999999 99999999999999999976644 5555543 1234667789999999999999999999999
Q ss_pred hhccCchhhhhhhcCCCeEEEEEeecCCCCCchHHHHHHHHHhhCCCEEEEeccccCCcchHHHHHHHHHHHhcCCceEE
Q 021079 155 TWMPQGEKLIQLEREKGIIIRFMIGHSATSNSILDKAIDSEDAQHKDFLRLEHIEGYHELSAKTKIFFSTAVAKWDADFY 234 (317)
Q Consensus 155 TW~~~~~~l~kL~~~~~i~v~FVvG~s~~~~~~~~~~I~~E~~~~~DIl~ld~~DsY~nLs~Kt~~~f~wa~~~~~a~f~ 234 (317)
|||++++.+.+++.+.+|+++||||++.++++.++++|+.|+++|||||++||+|+|.||+.||+++|+||.++|+|+||
T Consensus 161 TWg~~~~~~~kle~~~gv~vrFVIG~s~~~~~~ldr~Le~Ea~~ygDIL~lDfvDsY~NLT~KTl~~f~wA~~~~dAkF~ 240 (408)
T PLN03193 161 TWMPQGEKRKKLEEEKGIIIRFVIGHSATSGGILDRAIEAEDRKHGDFLRLDHVEGYLELSAKTKTYFATAVAMWDADFY 240 (408)
T ss_pred HHcCCcccccccccCCcEEEEEEeecCCCcchHHHHHHHHHHHHhCCEEEEecccccccchHHHHHHHHHHHHcCCCeEE
Confidence 99999887777878899999999999987678999999999999999999999999999999999999999999999999
Q ss_pred EEecCceEEeHHHHHHHHhhcCCCCceEEEEeecCcccccCCCCccccCccccCCCCCCCCcCcccceeeeCHHHHHHHH
Q 021079 235 VKVDDDVHVNLGMLATTLSRHRSKPRVYIGCMKSGPVLSQKNVKYHEPEYWKFGEEGNKYFRHATGQIYAISKDLATYIS 314 (317)
Q Consensus 235 vKvDDDvfVnl~~L~~~L~~~~~~~~lY~G~~~~gpv~r~~~~Kwyvp~~wkf~y~~~~YP~y~~G~~YviS~dla~~I~ 314 (317)
+|+|||+|||+++|+.+|+.+..++++|+|||+++|+..+++.|||+|++|+|+++++.|||||+|++||||+|+|++|+
T Consensus 241 mK~DDDvfVnv~~L~~~L~~~~~~~rlYiG~m~~gPvr~~~~~ky~epe~w~~~~~~~~YPpyAsG~gYVlS~DLa~~I~ 320 (408)
T PLN03193 241 VKVDDDVHVNIATLGETLVRHRKKPRVYIGCMKSGPVLSQKGVRYHEPEYWKFGENGNKYFRHATGQLYAISKDLASYIS 320 (408)
T ss_pred EEcCCCceEcHHHHHHHHHhcCCCCCEEEEecccCccccCCCCcCcCcccccccCccccCCCCCCcceEEehHHHHHHHH
Confidence 99999999999999999999887788999999999887777889999999999999999999999999999999999999
Q ss_pred hcC
Q 021079 315 INQ 317 (317)
Q Consensus 315 ~N~ 317 (317)
+|+
T Consensus 321 ~n~ 323 (408)
T PLN03193 321 INQ 323 (408)
T ss_pred hCh
Confidence 884
No 2
>KOG2288 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.6e-55 Score=403.95 Aligned_cols=185 Identities=71% Similarity=1.119 Sum_probs=180.6
Q ss_pred CCCeEEEEEEECCCCCHHHHHHHHHhhccCchhhhhhhcCCCeEEEEEeecCCCCCchHHHHHHHHHhhCCCEEEEe-cc
Q 021079 130 RPKVFVVIGINTAFSSRKRRDSVRDTWMPQGEKLIQLEREKGIIIRFMIGHSATSNSILDKAIDSEDAQHKDFLRLE-HI 208 (317)
Q Consensus 130 ~~~~~lvI~I~S~~~~~~rR~aIR~TW~~~~~~l~kL~~~~~i~v~FVvG~s~~~~~~~~~~I~~E~~~~~DIl~ld-~~ 208 (317)
++++++||||.|+|++.+||+++|+|||++++.+++|+++++|.++||||+ ++.+++++++|++|.++|+|+++|| |+
T Consensus 8 ~~k~l~vigI~T~f~s~~RR~~vR~TWmp~~~~l~rle~e~gv~~RFvIG~-~~~g~~~~r~ie~E~~~~~DfllLd~h~ 86 (274)
T KOG2288|consen 8 RRKVLLVIGINTAFSSRKRRDSVRQTWMPSGEGLKRLEEEKGVIIRFVIGT-ATLGASLDRALEEENAQHGDFLLLDRHE 86 (274)
T ss_pred ccceEEEEEeecccchhhhHHHHHHhhcCCccchhhhccccceEEEEEecc-CCccHHHHHHHHHHHHhcCCeEeechhH
Confidence 779999999999999999999999999999999999999999999999999 4568999999999999999999999 99
Q ss_pred ccCCcchHHHHHHHHHHHhcCCceEEEEecCceEEeHHHHHHHHhhcCCCCceEEEEeecCcccccCCCCccccCccccC
Q 021079 209 EGYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGMLATTLSRHRSKPRVYIGCMKSGPVLSQKNVKYHEPEYWKFG 288 (317)
Q Consensus 209 DsY~nLs~Kt~~~f~wa~~~~~a~f~vKvDDDvfVnl~~L~~~L~~~~~~~~lY~G~~~~gpv~r~~~~Kwyvp~~wkf~ 288 (317)
|+|++|+.||+.+|.+|.++|+++||+|+|||+|||++.|...|++++.++++|||||++|||+.+|++|||+|+ |||+
T Consensus 87 E~Y~~Ls~Kt~~~f~~A~~~~daeFyvKvDDDv~v~l~~L~~~la~~r~~pr~YiGcmksg~v~~~~~~kw~Epe-Wkfg 165 (274)
T KOG2288|consen 87 EAYEELSAKTKAFFSAAVAHWDAEFYVKVDDDVYVRLARLGTLLARERSHPRLYIGCMKSGPVLTQPGGKWYEPE-WKFG 165 (274)
T ss_pred HHHHHHHHHHHHHHHHHHHhccceEEEEccccceecHHHHHHHHHhhccCCceEEEEecCCccccCCCCcccChh-hhcC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred CCCCCCCcCcccceeeeCHHHHHHHHhcC
Q 021079 289 EEGNKYFRHATGQIYAISKDLATYISINQ 317 (317)
Q Consensus 289 y~~~~YP~y~~G~~YviS~dla~~I~~N~ 317 (317)
+.++ |+||+.|++|+||+|||++|++|+
T Consensus 166 ~~g~-YfrhA~G~~YvlS~dLa~yi~in~ 193 (274)
T KOG2288|consen 166 DNGN-YFRHATGGGYVLSKDLATYISINR 193 (274)
T ss_pred cccc-cchhccCceEEeeHHHHHHHHHhH
Confidence 9888 999999999999999999999996
No 3
>PLN03133 beta-1,3-galactosyltransferase; Provisional
Probab=100.00 E-value=3.5e-44 Score=367.33 Aligned_cols=177 Identities=21% Similarity=0.302 Sum_probs=161.8
Q ss_pred CCCCeEEEEEEECCCCCHHHHHHHHHhhccCchhhhhhhcCCCeEEEEEeecCCCCCchHHHHHHHHHhhCCCEEEEecc
Q 021079 129 RRPKVFVVIGINTAFSSRKRRDSVRDTWMPQGEKLIQLEREKGIIIRFMIGHSATSNSILDKAIDSEDAQHKDFLRLEHI 208 (317)
Q Consensus 129 ~~~~~~lvI~I~S~~~~~~rR~aIR~TW~~~~~~l~kL~~~~~i~v~FVvG~s~~~~~~~~~~I~~E~~~~~DIl~ld~~ 208 (317)
+.++++|||+|+|+|+|++||++||+|||+... .....++++|+||.+. +..++..|..|+++|||||++||+
T Consensus 381 ~~~~~~LlI~V~Sap~nf~rR~AIR~TWg~~~~-----~~~~~v~~rFvVG~s~--n~~l~~~L~~Ea~~ygDIIq~dF~ 453 (636)
T PLN03133 381 PKKPLDLFIGVFSTANNFKRRMAVRRTWMQYDA-----VRSGAVAVRFFVGLHK--NQMVNEELWNEARTYGDIQLMPFV 453 (636)
T ss_pred CCCceEEEEEEeCCcccHHHHHHHHHhhccccc-----cCCCceEEEEEEecCC--cHHHHHHHHHHHHHcCCeEEEeee
Confidence 356799999999999999999999999999642 2345699999999986 478899999999999999999999
Q ss_pred ccCCcchHHHHHHHHHHHhcCCceEEEEecCceEEeHHHHHHHHhhcCCCCceEEEEee-cCcccccCCCCccccCcccc
Q 021079 209 EGYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGMLATTLSRHRSKPRVYIGCMK-SGPVLSQKNVKYHEPEYWKF 287 (317)
Q Consensus 209 DsY~nLs~Kt~~~f~wa~~~~~a~f~vKvDDDvfVnl~~L~~~L~~~~~~~~lY~G~~~-~gpv~r~~~~Kwyvp~~wkf 287 (317)
|+|+|||+||++++.|+..|++++|++|+|||+|||+++|+++|......+++|+|++. ..+|+|++++|||+|.+
T Consensus 454 DsY~NLTlKtl~~~~wa~~c~~akFilK~DDDvFVnv~~Ll~~L~~~~~~~~Ly~G~v~~~~~PiRd~~sKWYVs~~--- 530 (636)
T PLN03133 454 DYYSLITWKTLAICIFGTEVVSAKYVMKTDDDAFVRVDEVLASLKRTNVSHGLLYGLINSDSQPHRNPDSKWYISPE--- 530 (636)
T ss_pred chhhhhHHHHHHHHHHHHhCCCceEEEEcCCceEEcHHHHHHHHHhcCCCCceEEEEeccCCCcccCCCCCCCCCHH---
Confidence 99999999999999999989999999999999999999999999887777789999987 46788999999999976
Q ss_pred CCCCCCCCcCcccceeeeCHHHHHHHHh
Q 021079 288 GEEGNKYFRHATGQIYAISKDLATYISI 315 (317)
Q Consensus 288 ~y~~~~YP~y~~G~~YviS~dla~~I~~ 315 (317)
.||++.|||||+|++||||+|+|++|+.
T Consensus 531 eyp~~~YPpYasG~gYVlS~Dla~~L~~ 558 (636)
T PLN03133 531 EWPEETYPPWAHGPGYVVSRDIAKEVYK 558 (636)
T ss_pred HCCCCCCCCCCCcCEEEEcHHHHHHHHH
Confidence 6789999999999999999999999975
No 4
>KOG2287 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.5e-43 Score=340.52 Aligned_cols=176 Identities=26% Similarity=0.362 Sum_probs=164.1
Q ss_pred CeEEEEEEECCCCCHHHHHHHHHhhccCchhhhhhhcCCCeEEEEEeecCCCCCchHHHHHHHHHhhCCCEEEEeccccC
Q 021079 132 KVFVVIGINTAFSSRKRRDSVRDTWMPQGEKLIQLEREKGIIIRFMIGHSATSNSILDKAIDSEDAQHKDFLRLEHIEGY 211 (317)
Q Consensus 132 ~~~lvI~I~S~~~~~~rR~aIR~TW~~~~~~l~kL~~~~~i~v~FVvG~s~~~~~~~~~~I~~E~~~~~DIl~ld~~DsY 211 (317)
.++++++|.|++++++||++||+|||++.. ..+..++++|++|.+.+.+ .+++.+.+|++.|||||+.||.|+|
T Consensus 94 ~~~lLl~V~S~~~~farR~aiR~TW~~~~~-----v~~~~v~~~FLvG~~~~~~-~~~~~l~~Ea~~ygDIi~~df~Dty 167 (349)
T KOG2287|consen 94 PPELLLLVKSAPDNFARRNAIRKTWGNENN-----VRGGRVRVLFLVGLPSNED-KLNKLLADEARLYGDIIQVDFEDTY 167 (349)
T ss_pred CceEEEEEecCCCCHHHHHHHHHHhcCccc-----cCCCcEEEEEEecCCCcHH-HHHHHHHHHHHHhCCEEEEecccch
Confidence 489999999999999999999999999874 3567899999999997544 6789999999999999999999999
Q ss_pred CcchHHHHHHHHHHHh-cCCceEEEEecCceEEeHHHHHHHHhhc-CCCCceEEEEee-cCcccccCCCCccccCccccC
Q 021079 212 HELSAKTKIFFSTAVA-KWDADFYVKVDDDVHVNLGMLATTLSRH-RSKPRVYIGCMK-SGPVLSQKNVKYHEPEYWKFG 288 (317)
Q Consensus 212 ~nLs~Kt~~~f~wa~~-~~~a~f~vKvDDDvfVnl~~L~~~L~~~-~~~~~lY~G~~~-~gpv~r~~~~Kwyvp~~wkf~ 288 (317)
.|||+||++++.|+.. |++|+|++|+|||+|||+++|..+|..+ .+.+.+|.|.+. ..+|+|++.+|||+|+. .
T Consensus 168 ~nltlKtl~~l~w~~~~cp~akfi~K~DDDvfv~~~~L~~~L~~~~~~~~~~~~G~v~~~~~p~R~~~~KwyVp~~---~ 244 (349)
T KOG2287|consen 168 FNLTLKTLAILLWGVSKCPDAKFILKIDDDVFVNPDNLLEYLDKLNDPSSDLYYGRVIQNAPPIRDKTSKWYVPES---E 244 (349)
T ss_pred hchHHHHHHHHHHHHhcCCcceEEEeccCceEEcHHHHHHHHhccCCCCcceEEEeecccCCCCCCCCCCCccCHH---H
Confidence 9999999999999999 8899999999999999999999999999 788899999976 46889999999999987 7
Q ss_pred CCCCCCCcCcccceeeeCHHHHHHHHhc
Q 021079 289 EEGNKYFRHATGQIYAISKDLATYISIN 316 (317)
Q Consensus 289 y~~~~YP~y~~G~~YviS~dla~~I~~N 316 (317)
||.+.|||||+|++|+||+|+|+.|+++
T Consensus 245 y~~~~YP~Y~sG~gYvis~~~a~~l~~~ 272 (349)
T KOG2287|consen 245 YPCSVYPPYASGPGYVISGDAARRLLKA 272 (349)
T ss_pred CCCCCCCCcCCCceeEecHHHHHHHHHH
Confidence 8999999999999999999999999875
No 5
>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane
Probab=100.00 E-value=3.1e-42 Score=307.42 Aligned_cols=162 Identities=30% Similarity=0.430 Sum_probs=146.2
Q ss_pred HHHHHHHHhhccCchhhhhhhcCCCeEEEEEeecCCCCCchHHHHHHHHHhhCCCEEEEeccccCCcchHHHHHHHHHHH
Q 021079 147 KRRDSVRDTWMPQGEKLIQLEREKGIIIRFMIGHSATSNSILDKAIDSEDAQHKDFLRLEHIEGYHELSAKTKIFFSTAV 226 (317)
Q Consensus 147 ~rR~aIR~TW~~~~~~l~kL~~~~~i~v~FVvG~s~~~~~~~~~~I~~E~~~~~DIl~ld~~DsY~nLs~Kt~~~f~wa~ 226 (317)
+||++||+||++... ....+++++||+|.+++.+..+++.|.+|+++|+|||++||.|+|.|||+||+++|+|+.
T Consensus 1 ~rR~~IR~TW~~~~~-----~~~~~~~~~FvvG~~~~~~~~~~~~l~~E~~~y~Dil~~d~~D~y~nlt~K~~~~~~w~~ 75 (195)
T PF01762_consen 1 ERRQAIRETWGNQRN-----FKGVRVKVVFVVGESPNSDSDLQEALQEEAEKYGDILQGDFVDSYRNLTLKTLAGLKWAS 75 (195)
T ss_pred ChHHHHHHHHhcccc-----cCCCcEEEEEEEecCCCCcHHHHHHhhhhhhhcCceEeeecccccchhhHHHHHHHHHHH
Confidence 589999999999864 235889999999999866778888999999999999999999999999999999999999
Q ss_pred h-cCCceEEEEecCceEEeHHHHHHHHhhc--C-CCCceEEEEeecCcccccCCCCccccCccccCCCCCCCCcCcccce
Q 021079 227 A-KWDADFYVKVDDDVHVNLGMLATTLSRH--R-SKPRVYIGCMKSGPVLSQKNVKYHEPEYWKFGEEGNKYFRHATGQI 302 (317)
Q Consensus 227 ~-~~~a~f~vKvDDDvfVnl~~L~~~L~~~--~-~~~~lY~G~~~~gpv~r~~~~Kwyvp~~wkf~y~~~~YP~y~~G~~ 302 (317)
+ |++++|++|+|||+|||+++|.++|... . ....+|++++..++|+|++.+|||+|.+ .|+.+.|||||+|++
T Consensus 76 ~~c~~~~~v~k~DDD~~vn~~~l~~~L~~~~~~~~~~~~~g~~~~~~~~~r~~~~kw~v~~~---~y~~~~yP~y~~G~~ 152 (195)
T PF01762_consen 76 KHCPNAKYVLKVDDDVFVNPDRLVSFLKSLKQDPSKNSIYGGCIKNGPPIRDPSSKWYVSEE---EYPDDYYPPYCSGGG 152 (195)
T ss_pred hhCCchhheeecCcEEEEehHHhhhhhhhcccCccccccccccccCCccccccccCceeeee---ecccccCCCcCCCCe
Confidence 9 5569999999999999999999999998 2 3345666677788999999999999987 678999999999999
Q ss_pred eeeCHHHHHHHHhc
Q 021079 303 YAISKDLATYISIN 316 (317)
Q Consensus 303 YviS~dla~~I~~N 316 (317)
|+||+++|+.|+.+
T Consensus 153 yvls~~~v~~i~~~ 166 (195)
T PF01762_consen 153 YVLSSDVVKRIYKA 166 (195)
T ss_pred EEecHHHHHHHHHH
Confidence 99999999999875
No 6
>PTZ00210 UDP-GlcNAc-dependent glycosyltransferase; Provisional
Probab=99.97 E-value=2.3e-30 Score=250.32 Aligned_cols=170 Identities=19% Similarity=0.275 Sum_probs=142.7
Q ss_pred CCCCCeEEEEEEECCCCC--HHHHHHHHHhhccCchhhhh-hhcCCCeEEEEEeecCCCCCchHHHHHHHHHhhCCCEEE
Q 021079 128 SRRPKVFVVIGINTAFSS--RKRRDSVRDTWMPQGEKLIQ-LEREKGIIIRFMIGHSATSNSILDKAIDSEDAQHKDFLR 204 (317)
Q Consensus 128 ~~~~~~~lvI~I~S~~~~--~~rR~aIR~TW~~~~~~l~k-L~~~~~i~v~FVvG~s~~~~~~~~~~I~~E~~~~~DIl~ 204 (317)
-.+++.++++||.|..++ +.||+++|+||++-.....+ ..-...+.++|++|.+++.+-.++.++.+|+++|||||+
T Consensus 75 w~~~~~lv~~Gi~S~d~~~r~~rR~lqr~t~w~y~~va~~~n~ftg~~lv~y~l~~H~~~~~~~~~~L~eEA~~~~DIVi 154 (382)
T PTZ00210 75 WKAQRFLAVLGIPSVDNSERSRRRDLQRQTCWKYSGVATRSNNFSGSLLPLYLLAPHQSNSYLISHSLKEEAARTHDIIT 154 (382)
T ss_pred hccCCceEEEeccCCCchHHHHHHHHHHhhhhcchhhhhhccCCchhhhhhhhhccCCccchhhhHHHHHHHHHhCCEEE
Confidence 457788999999999987 89999999999987653222 112345678999999998777999999999999999999
Q ss_pred Eec------------------cccCCcchHHHHHHHHHHHh-cCCceEEEEecCceEEeHHHHHHHHhhcCCCCceEEEE
Q 021079 205 LEH------------------IEGYHELSAKTKIFFSTAVA-KWDADFYVKVDDDVHVNLGMLATTLSRHRSKPRVYIGC 265 (317)
Q Consensus 205 ld~------------------~DsY~nLs~Kt~~~f~wa~~-~~~a~f~vKvDDDvfVnl~~L~~~L~~~~~~~~lY~G~ 265 (317)
+|| .|++.++|+||+++|+||.. |++++|++|.|||+|||++.++++|+.. +...+|+|.
T Consensus 155 lpf~d~~~tTnKkiG~~g~WG~e~e~~mT~KT~l~~~wA~~~cP~a~YImKgDDDvFVrVp~lL~~Lr~~-prr~LY~G~ 233 (382)
T PTZ00210 155 LPTNDVSPSTRKKIGENGNWGIEAEVAMSRKTYLWLRFALHMFPNVSYIVKGDDDIFIRVPKYLADLRVM-PRHGLYMGR 233 (382)
T ss_pred EecccCccccccccccCCcccchhhcchhHHHHHHHHHHHHhCCCCCeEEEcCCCeEeeHHHHHHHHhhC-CCCceEEEe
Confidence 999 67778899999999999999 6799999999999999999999999765 555699998
Q ss_pred eecC-cccccCCCCccccCccccCCCCCCCCcCcccceeeeCHHHHHHHHhc
Q 021079 266 MKSG-PVLSQKNVKYHEPEYWKFGEEGNKYFRHATGQIYAISKDLATYISIN 316 (317)
Q Consensus 266 ~~~g-pv~r~~~~Kwyvp~~wkf~y~~~~YP~y~~G~~YviS~dla~~I~~N 316 (317)
+... .+.| +.+||||+|++|+||+|+|+.|+..
T Consensus 234 v~~~~~p~R------------------d~~PpY~~G~gYvLSrDVA~~Lvs~ 267 (382)
T PTZ00210 234 YNYYNRIWR------------------RNQLTYVNGYCITLSRDTAQAIISY 267 (382)
T ss_pred eCCCCcccc------------------CCCCCccccceeeccHHHHHHHHhh
Confidence 6421 1111 1369999999999999999999763
No 7
>PF13334 DUF4094: Domain of unknown function (DUF4094)
Probab=99.96 E-value=7.7e-30 Score=205.20 Aligned_cols=91 Identities=42% Similarity=0.705 Sum_probs=82.6
Q ss_pred cchhHHHHHHHHHHHHHHHhcCCCCCCCCCCCCccc-ccccccceeeccccccccc---CCchHHHHHHHhhhccccCCC
Q 021079 12 STKWIPFVCLFCFALGILFSNLTWNPPESDGRPSLN-VRRREQQVAVASTDCAKKA---FQDQDVAKEVLKTRGAIHDGS 87 (317)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 87 (317)
|+||+++||++|||+|+|||||||..||+++ +.+. .+.++++++++++||++++ ++++|+|+||+|||++||
T Consensus 1 S~kw~l~Lc~~SF~~G~lft~R~W~~pe~~~-~~~~~~~~~~~~l~l~s~~c~~k~~~~~~~~di~~eV~kTh~aIq--- 76 (95)
T PF13334_consen 1 SRKWVLLLCIASFCAGMLFTNRMWTVPESKE-ISRRSSQDAEERLQLVSEDCDPKKLKESDQRDIMGEVSKTHEAIQ--- 76 (95)
T ss_pred CchHHHHHHHHHHHHHHHHhcccccCCcccc-chhhhccccccccccccccccccccccCCccchhHHHHHHHHHHH---
Confidence 6799999999999999999999999999987 5443 5577899999999999654 788999999999999999
Q ss_pred cccchhhhhhHHHHhhhhhhcccC
Q 021079 88 VESDRTLDKTIGQLQMELAASRSG 111 (317)
Q Consensus 88 ~~~~~~~~~~~~~le~el~~a~~~ 111 (317)
+|||+||+||||||+||++
T Consensus 77 -----~LdKtIS~LEMELAaARa~ 95 (95)
T PF13334_consen 77 -----SLDKTISSLEMELAAARAE 95 (95)
T ss_pred -----HHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999973
No 8
>PF02434 Fringe: Fringe-like; InterPro: IPR003378 The Notch receptor is a large, cell surface transmembrane protein involved in a wide variety of developmental processes in higher organisms []. It becomes activated when its extracellular region binds to ligands located on adjacent cells. Much of this extracellular region is composed of EGF-like repeats, many of which can be O-fucosylated. A number of these O-fucosylated repeats can in turn be further modified by the action of a beta-1,3-N-acetylglucosaminyltransferase enzyme known as Fringe []. Fringe potentiates the activation of Notch by Delta ligands, while inhibiting activation by Serrate/Jagged ligands. This regulation of Notch signalling by Fringe is important in many processes []. Four distinct Fringe proteins have so far been studied in detail; Drosophila Fringe (Dfng) and its three mammalian homologues Lunatic Fringe (Lfng), Radical Fringe (Rfng) and Manic Fringe (Mfng). Dfng, Lfng and Rfng have all been shown to play important roles in developmental processes within their host, though the phenotype of mutants can vary between species e.g. Rfng mutants are retarded in wing development in chickens, but have no obvious phenotype in mice [, , ]. Mfng mutants have not, so far, been charcterised. Biochemical studies indicate that the Fringe proteins are fucose-specific transferases requiring manganese for activity and utilising UDP-N-acetylglucosamine as a donor substrate []. The three mammalian proteins show distinct variations in their catalytic efficiencies with different substrates. Dfng is a glucosaminyltransferase that controls the response of the Notch receptor to specific ligands which is localised to the Golgi apparatus [] (not secreted as previously thought). Modification of Notch occurs through glycosylation by Dfng. This entry consists of Fringe proteins and related glycosyltransferase enzymes including: Beta-1,3-glucosyltransferase, which glucosylates O-linked fucosylglycan on thrombospondin type 1 repeat domains []. Core 1 beta1,3-galactosyltransferase 1, generates the core T antigen, which is a precursor for many extended O-glycans in glycoproteins and plays a central role in many processes, such as angiogenesis, thrombopoiesis and kidney homeostasis development []. ; GO: 0016757 transferase activity, transferring glycosyl groups, 0016020 membrane; PDB: 2J0B_A 2J0A_A.
Probab=99.58 E-value=5.8e-15 Score=137.87 Aligned_cols=155 Identities=20% Similarity=0.296 Sum_probs=79.4
Q ss_pred EEEEEEECCCCCHHH-HHHHHHhhccCchhhhhhhcCCCeEEEEEeecCCCCCchHHHHHHHHHhhCCCEEEEeccccCC
Q 021079 134 FVVIGINTAFSSRKR-RDSVRDTWMPQGEKLIQLEREKGIIIRFMIGHSATSNSILDKAIDSEDAQHKDFLRLEHIEGYH 212 (317)
Q Consensus 134 ~lvI~I~S~~~~~~r-R~aIR~TW~~~~~~l~kL~~~~~i~v~FVvG~s~~~~~~~~~~I~~E~~~~~DIl~ld~~DsY~ 212 (317)
.++|+|+|++.+.+. -.+|++||++.+.. . .|+....+ +.. +..+ ...+++.-+...++.
T Consensus 7 dI~i~V~T~~k~h~tR~~~I~~TW~~~~~~---------~--~~ifsd~~--d~~----l~~~--~~~~l~~~~~~~~~~ 67 (252)
T PF02434_consen 7 DIFIAVKTTKKFHKTRAPAIKQTWAKRCNK---------Q--TFIFSDAE--DPS----LPTV--TGVHLVNPNCDAGHC 67 (252)
T ss_dssp GEEEEEE--GGGTTTTHHHHHHTGGGGSGG---------G--EEEEESS----HH----HHHH--HGGGEEE--------
T ss_pred cEEEEEEeCHHHHHHHHHHHHHHHHhhcCC---------c--eEEecCcc--ccc----cccc--cccccccCCCcchhh
Confidence 689999999986654 48999999998741 1 34322221 222 3222 334555555555555
Q ss_pred cchHHHHHHHHHHHh-cCCceEEEEecCceEEeHHHHHHHHhhcCCCCceEEEEeecCcccccCCCCccccCccccCCCC
Q 021079 213 ELSAKTKIFFSTAVA-KWDADFYVKVDDDVHVNLGMLATTLSRHRSKPRVYIGCMKSGPVLSQKNVKYHEPEYWKFGEEG 291 (317)
Q Consensus 213 nLs~Kt~~~f~wa~~-~~~a~f~vKvDDDvfVnl~~L~~~L~~~~~~~~lY~G~~~~gpv~r~~~~Kwyvp~~wkf~y~~ 291 (317)
...++.++.+.+... ..+++|++++|||+||++++|..+|...++.+++|+|+.....+..... + +.+.. ..
T Consensus 68 ~~~~~~~~~~~y~~~~~~~~~Wf~~~DDDtyv~~~~L~~~L~~~~~~~~~yiG~~~~~~~~~~~~-~-~~~~~-----~~ 140 (252)
T PF02434_consen 68 RKTLSCKMAYEYDHFLNSDKDWFCFADDDTYVNVENLRRLLSKYDPSEPIYIGRPSGDRPIEIIH-R-FNPNK-----SK 140 (252)
T ss_dssp -----HHHHHHHHHHHHHT-SEEEEEETTEEE-HHHHHHHHTTS-TTS--EEE-EE------------------------
T ss_pred HHHHHHHHHHHHHhhhcCCceEEEEEeCCceecHHHHHHHHhhCCCccCEEeeeeccCccceeec-c-ccccc-----cC
Confidence 445555544444333 3688999999999999999999999999999999999865322211100 0 00000 11
Q ss_pred CCCCcCcc-cceeeeCHHHHHHHH
Q 021079 292 NKYFRHAT-GQIYAISKDLATYIS 314 (317)
Q Consensus 292 ~~YP~y~~-G~~YviS~dla~~I~ 314 (317)
..-..|++ |+||+||+.+++.|.
T Consensus 141 ~~~~~f~~GGaG~vlSr~~~~k~~ 164 (252)
T PF02434_consen 141 DSGFWFATGGAGYVLSRALLKKMS 164 (252)
T ss_dssp -----EE-GGG-EEEEHHHHHHHH
T ss_pred cCceEeeCCCeeHHHhHHHHHHHh
Confidence 12234556 689999999999983
No 9
>KOG2246 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=99.39 E-value=1.7e-12 Score=127.27 Aligned_cols=140 Identities=24% Similarity=0.301 Sum_probs=106.7
Q ss_pred CCCCCeEEEEEEECCCCCHHHH-HHHHHhhccCchhhhhhhcCCCeEEEEEe---ecCCCCCchHHHHHHHHHhhCCCEE
Q 021079 128 SRRPKVFVVIGINTAFSSRKRR-DSVRDTWMPQGEKLIQLEREKGIIIRFMI---GHSATSNSILDKAIDSEDAQHKDFL 203 (317)
Q Consensus 128 ~~~~~~~lvI~I~S~~~~~~rR-~aIR~TW~~~~~~l~kL~~~~~i~v~FVv---G~s~~~~~~~~~~I~~E~~~~~DIl 203 (317)
-..++..+++.|.|++.+..-| +.+-+||++.++. ..|+- +.. ...+. .|
T Consensus 86 ~l~r~~~v~cwv~t~~~~~~~~~~~v~~TW~~rc~~-----------~~f~s~~~s~~--------------~~~f~-~v 139 (364)
T KOG2246|consen 86 WLSRSGRVLCWVLTSPMRHVTRADAVKETWLKRCDK-----------GIFFSPTLSKD--------------DSRFP-TV 139 (364)
T ss_pred ccCCCceEEEEEEecCcCceeehhhhhcccccccCc-----------ceecCccCCCC--------------CCcCc-ee
Confidence 4567789999999999877665 7999999999852 23443 222 11222 23
Q ss_pred EEeccccCCcchHHHHHHHHHHHhc--CCceEEEEecCceEEeHHHHHHHHhhcCCCCceEEEEeecCcccccCCCCccc
Q 021079 204 RLEHIEGYHELSAKTKIFFSTAVAK--WDADFYVKVDDDVHVNLGMLATTLSRHRSKPRVYIGCMKSGPVLSQKNVKYHE 281 (317)
Q Consensus 204 ~ld~~DsY~nLs~Kt~~~f~wa~~~--~~a~f~vKvDDDvfVnl~~L~~~L~~~~~~~~lY~G~~~~gpv~r~~~~Kwyv 281 (317)
..+..|+|+++..||..+|+++.++ .+++||+|+|||+|+.+++|..+|..+++++++|+|+.. +-|.
T Consensus 140 ~~~~~~g~~~~~~ktr~~~~yv~~~~~~~~dWf~~aDDDTy~i~eNLr~~L~~yDp~~p~YiG~~~----------~~~~ 209 (364)
T KOG2246|consen 140 YYNLPDGYRSLWRKTRIAFKYVYDHILKDYDWFLKADDDTYFIMENLRYVLSKYDPEKPVYLGYRS----------KSYF 209 (364)
T ss_pred eccCCcchHHHHHHHHHHHHHHHHhccCCCCeEEeccCCeEEeHHHHHHHHhhcCCCCcEEecccc----------cccc
Confidence 6789999999999999999999863 599999999999999999999999999999999999853 1111
Q ss_pred cCccccCCCCCCCCcCcccceeeeCHHHHHHHH
Q 021079 282 PEYWKFGEEGNKYFRHATGQIYAISKDLATYIS 314 (317)
Q Consensus 282 p~~wkf~y~~~~YP~y~~G~~YviS~dla~~I~ 314 (317)
-. .|- ..|++|++|.++.+.++
T Consensus 210 ~~---------~y~--~g~ag~~ls~aa~~~la 231 (364)
T KOG2246|consen 210 QN---------GYS--SGGAGYVLSFAALRRLA 231 (364)
T ss_pred cc---------ccc--cCCCCcceeHHHHHHHH
Confidence 11 111 26788888888777654
No 10
>PLN03153 hypothetical protein; Provisional
Probab=98.55 E-value=7.4e-07 Score=90.52 Aligned_cols=151 Identities=19% Similarity=0.156 Sum_probs=88.7
Q ss_pred CCCeEEEEEEECCCCCH-HHHHHHHHhhccCchhhhhhhcCCCeEEEEEeecCCCCCchHHHHHHHHHhhCCCEEEE-e-
Q 021079 130 RPKVFVVIGINTAFSSR-KRRDSVRDTWMPQGEKLIQLEREKGIIIRFMIGHSATSNSILDKAIDSEDAQHKDFLRL-E- 206 (317)
Q Consensus 130 ~~~~~lvI~I~S~~~~~-~rR~aIR~TW~~~~~~l~kL~~~~~i~v~FVvG~s~~~~~~~~~~I~~E~~~~~DIl~l-d- 206 (317)
..--.++++|.++.... +|+..|+.+|.+... . -.+|+.....+. .+...---|-+. |
T Consensus 119 t~~~hIvF~I~~s~~~w~~R~~yik~wW~p~~~--------r--g~v~ld~~~~~~---------~~~~~~P~i~is~d~ 179 (537)
T PLN03153 119 LSLNHIMFGIAGSSQLWKRRKELVRLWWRPNQM--------R--GHVWLEEQVSPE---------EGDDSLPPIMVSEDT 179 (537)
T ss_pred CccccEEEEEEEchhhhhhhhhhhhhhcCcccc--------e--eEEEecccCCCC---------CCcCCCCCEEeCCCc
Confidence 34457899999988766 556899999998531 1 134443332210 000000001110 0
Q ss_pred --cc-ccCCcchHH--HHHHHHHHHh--cCCceEEEEecCceEEeHHHHHHHHhhcCCCCceEEEEeecCcccccCCCCc
Q 021079 207 --HI-EGYHELSAK--TKIFFSTAVA--KWDADFYVKVDDDVHVNLGMLATTLSRHRSKPRVYIGCMKSGPVLSQKNVKY 279 (317)
Q Consensus 207 --~~-DsY~nLs~K--t~~~f~wa~~--~~~a~f~vKvDDDvfVnl~~L~~~L~~~~~~~~lY~G~~~~gpv~r~~~~Kw 279 (317)
|. ++..+.... +..+...+.. .++++||+++|||+|+.+++|+.+|...++.++.|+|......
T Consensus 180 s~f~y~~~~Gh~sa~rI~rmv~et~~~~~pd~kWfVf~DDDTyf~~~NLv~~Ls~YDptkp~YIGs~Se~~--------- 250 (537)
T PLN03153 180 SRFRYTNPTGHPSGLRISRIVLESFRLGLPDVRWFVLGDDDTIFNADNLVAVLSKYDPSEMVYVGGPSESH--------- 250 (537)
T ss_pred ccccccCCCCcHHHHHHHHHHHHHHHhhCCCCCEEEEecCCccccHHHHHHHHhhcCCCCCEEeccccccc---------
Confidence 10 111122221 1113333333 4899999999999999999999999999999999999643110
Q ss_pred cccCccccCCCCCCCCcC-cccceeeeCHHHHHHHHhc
Q 021079 280 HEPEYWKFGEEGNKYFRH-ATGQIYAISKDLATYISIN 316 (317)
Q Consensus 280 yvp~~wkf~y~~~~YP~y-~~G~~YviS~dla~~I~~N 316 (317)
+..-.|+ | -| -+|+||+||+.+|+.|..+
T Consensus 251 --~qn~~f~-----~-~fA~GGAG~~LSrPLae~L~~~ 280 (537)
T PLN03153 251 --SANSYFS-----H-NMAFGGGGIAISYPLAEALSRI 280 (537)
T ss_pred --ccccccc-----c-ccccCCceEEEcHHHHHHHHHH
Confidence 0000011 1 12 3689999999999988754
No 11
>KOG3708 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.30 E-value=0.012 Score=60.16 Aligned_cols=84 Identities=18% Similarity=0.223 Sum_probs=61.9
Q ss_pred ccCCcchHHHH-HHHHHHHhc--CCceEEEEecCceEEeHHHHHHHHhhcCCCCceEEEEeecCcccccCCCCccccCcc
Q 021079 209 EGYHELSAKTK-IFFSTAVAK--WDADFYVKVDDDVHVNLGMLATTLSRHRSKPRVYIGCMKSGPVLSQKNVKYHEPEYW 285 (317)
Q Consensus 209 DsY~nLs~Kt~-~~f~wa~~~--~~a~f~vKvDDDvfVnl~~L~~~L~~~~~~~~lY~G~~~~gpv~r~~~~Kwyvp~~w 285 (317)
-.|..-..|+. +.+++..++ -++||++-+-|++|||...|+.++.....+.++|+|.- .+
T Consensus 73 s~~d~r~~~~~s~vl~~l~~~~~~~YDwFll~~D~tYv~a~~L~~l~~hmsin~dlymGEe-------------~~---- 135 (681)
T KOG3708|consen 73 SPYDLRGQKTHSMVLGLLFNMVHNNYDWFLLAKDSTYVNAFVLLRLIDHMSINEDLYMGEE-------------AE---- 135 (681)
T ss_pred CccccCccccHHHHHHHHHHhhccccceEEEecCcceecHHHHHHHHhhcccccccccchh-------------hh----
Confidence 33333344444 345566663 48999999999999999999999999998999999921 01
Q ss_pred ccCCCCCCCCcCcc-cceeeeCHHHHHHHHhc
Q 021079 286 KFGEEGNKYFRHAT-GQIYAISKDLATYISIN 316 (317)
Q Consensus 286 kf~y~~~~YP~y~~-G~~YviS~dla~~I~~N 316 (317)
.++.- |. |.||++|+.++..+-.|
T Consensus 136 ----~gs~r---C~l~~G~LLS~s~l~~lrnn 160 (681)
T KOG3708|consen 136 ----DGSGR---CRLDTGMLLSQSLLHALRNN 160 (681)
T ss_pred ----CccCc---cccccceeecHHHHHHHHhh
Confidence 11111 66 68999999999999877
No 12
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=94.24 E-value=0.99 Score=36.58 Aligned_cols=135 Identities=13% Similarity=0.111 Sum_probs=66.6
Q ss_pred CeEEEEEeecCCCCCchHHHHHHHHHhhCCCEEEEeccccCCcchHHHHHHHHHHHhcCCceEEEEecCceEEeHHHHHH
Q 021079 171 GIIIRFMIGHSATSNSILDKAIDSEDAQHKDFLRLEHIEGYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGMLAT 250 (317)
Q Consensus 171 ~i~v~FVvG~s~~~~~~~~~~I~~E~~~~~DIl~ld~~DsY~nLs~Kt~~~f~wa~~~~~a~f~vKvDDDvfVnl~~L~~ 250 (317)
.+.+++|-..+ + +.....+.+-.+....+..+...++. .+..-. ..+.+....+|++.+|||.++..+.|..
T Consensus 27 ~~eiivvdd~s-~--d~~~~~~~~~~~~~~~i~~i~~~~n~-g~~~~~----n~~~~~a~~~~i~~ld~D~~~~~~~l~~ 98 (169)
T PF00535_consen 27 DFEIIVVDDGS-T--DETEEILEEYAESDPNIRYIRNPENL-GFSAAR----NRGIKHAKGEYILFLDDDDIISPDWLEE 98 (169)
T ss_dssp EEEEEEEECS--S--SSHHHHHHHHHCCSTTEEEEEHCCCS-HHHHHH----HHHHHH--SSEEEEEETTEEE-TTHHHH
T ss_pred CEEEEEecccc-c--cccccccccccccccccccccccccc-cccccc----cccccccceeEEEEeCCCceEcHHHHHH
Confidence 35565665554 2 33333344333334556656665443 333333 3333334556999999999999887777
Q ss_pred HHhhcCC-CCceEEEEee-c-Cc--ccccCCC--CccccCccccCCCCCCCCcCcccceeeeCHHHHHHH
Q 021079 251 TLSRHRS-KPRVYIGCMK-S-GP--VLSQKNV--KYHEPEYWKFGEEGNKYFRHATGQIYAISKDLATYI 313 (317)
Q Consensus 251 ~L~~~~~-~~~lY~G~~~-~-gp--v~r~~~~--Kwyvp~~wkf~y~~~~YP~y~~G~~YviS~dla~~I 313 (317)
++..... ...+.+|... . .. ....... .+..+...........-.+++.|++.++++++.+.+
T Consensus 99 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~ 168 (169)
T PF00535_consen 99 LVEALEKNPPDVVIGSVIYIDDDNRYPDRRLRFSFWNRFERKIFNNIRFWKISFFIGSCALFRRSVFEEI 168 (169)
T ss_dssp HHHHHHHCTTEEEEEEEEEEECTTETEECCCTSEEEECCHCHHHHTTHSTTSSEESSSCEEEEEHHHHHC
T ss_pred HHHHHHhCCCcEEEEEEEEecCCccccccccchhhhhhhhhHHHHhhhcCCcccccccEEEEEHHHHHhh
Confidence 6666654 3345566543 1 11 1000000 011111001011122334467888999999988765
No 13
>PF01755 Glyco_transf_25: Glycosyltransferase family 25 (LPS biosynthesis protein); InterPro: IPR002654 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 25 GT25 from CAZY comprises enzymes with only one known activity; as a lipopolysaccharide biosynthesis protein. These enzymes catalyse the transfer of various sugars onto the growing lipopolysaccharide chain during its biosynthesis [].; GO: 0009103 lipopolysaccharide biosynthetic process
Probab=93.25 E-value=1.7 Score=38.23 Aligned_cols=93 Identities=16% Similarity=0.128 Sum_probs=52.7
Q ss_pred EEEECCCCCHHHHHHHHHhhccCchhhhhhhcCCCeEEEEEeecCCCCCchHHHHHHHHHhhCCCEEEEe-----ccccC
Q 021079 137 IGINTAFSSRKRRDSVRDTWMPQGEKLIQLEREKGIIIRFMIGHSATSNSILDKAIDSEDAQHKDFLRLE-----HIEGY 211 (317)
Q Consensus 137 I~I~S~~~~~~rR~aIR~TW~~~~~~l~kL~~~~~i~v~FVvG~s~~~~~~~~~~I~~E~~~~~DIl~ld-----~~DsY 211 (317)
|.|.|-+.+.+||+.+.+..... ++.+-|+-|..... ++. .+....++.-.... ..-+.
T Consensus 4 i~vInL~~~~~Rr~~~~~~~~~~-----------~~~~e~~~Avdg~~---l~~--~~~~~~~~~~~~~~~~~~~lt~gE 67 (200)
T PF01755_consen 4 IYVINLDRSTERRERIQQQLAKL-----------GINFEFFDAVDGRD---LSE--DELFRRYDPELFKKRYGRPLTPGE 67 (200)
T ss_pred EEEEECCCCHHHHHHHHHHHHHc-----------CCceEEEEeecccc---cch--HHHHHHhhhhhhhccccccCCcce
Confidence 45667888899999998776644 34556776665421 111 01111121111110 11111
Q ss_pred CcchHHHHHHHHHHHhcCCceEEEEecCceEEeHH
Q 021079 212 HELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLG 246 (317)
Q Consensus 212 ~nLs~Kt~~~f~wa~~~~~a~f~vKvDDDvfVnl~ 246 (317)
-.-.+-.+..++-+++ -+.++.+-.-||+.++.+
T Consensus 68 iGC~lSH~~~w~~~v~-~~~~~~lIlEDDv~~~~~ 101 (200)
T PF01755_consen 68 IGCALSHIKAWQRIVD-SGLEYALILEDDVIFDPD 101 (200)
T ss_pred EeehhhHHHHHHHHHH-cCCCeEEEEecccccccc
Confidence 1225566677777776 367898999999999865
No 14
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=92.55 E-value=3 Score=36.64 Aligned_cols=132 Identities=11% Similarity=0.037 Sum_probs=58.3
Q ss_pred eEEEEEeecCCCCCchHHHHHHHHHhhCCCE--EEEeccccCCcch--HHHHHHHHHHHhcCCceEEEEecCceEEeHHH
Q 021079 172 IIIRFMIGHSATSNSILDKAIDSEDAQHKDF--LRLEHIEGYHELS--AKTKIFFSTAVAKWDADFYVKVDDDVHVNLGM 247 (317)
Q Consensus 172 i~v~FVvG~s~~~~~~~~~~I~~E~~~~~DI--l~ld~~DsY~nLs--~Kt~~~f~wa~~~~~a~f~vKvDDDvfVnl~~ 247 (317)
+.++++...+. +.....+++-...+... -.+... .|.. .|.. .+.++.+..+.+|++.+|||+.+..+.
T Consensus 31 ~~v~vvd~~~~---~~~~~~~~~~~~~~~~~~v~vi~~~---~~~g~~~k~~-a~n~~~~~~~~d~i~~lD~D~~~~p~~ 103 (228)
T PF13641_consen 31 LEVVVVDDGSD---DETAEILRALAARYPRVRVRVIRRP---RNPGPGGKAR-ALNEALAAARGDYILFLDDDTVLDPDW 103 (228)
T ss_dssp EEEEEEEE-SS---S-GCTTHHHHHHTTGG-GEEEEE-------HHHHHHHH-HHHHHHHH---SEEEEE-SSEEE-CHH
T ss_pred eEEEEEECCCC---hHHHHHHHHHHHHcCCCceEEeecC---CCCCcchHHH-HHHHHHHhcCCCEEEEECCCcEECHHH
Confidence 55666654442 22223344444555542 222221 2222 3333 446666656799999999999999999
Q ss_pred HHHHHhhc-CCCCceEEEEeecCc--ccccCCC-----CccccCccccCCCCCCCCcCcccceeeeCHHHHHHH
Q 021079 248 LATTLSRH-RSKPRVYIGCMKSGP--VLSQKNV-----KYHEPEYWKFGEEGNKYFRHATGQIYAISKDLATYI 313 (317)
Q Consensus 248 L~~~L~~~-~~~~~lY~G~~~~gp--v~r~~~~-----Kwyvp~~wkf~y~~~~YP~y~~G~~YviS~dla~~I 313 (317)
|..++... .+.-.+..|.+...+ ..-..-. .|+... ..+...... .++.|++.++.++++..+
T Consensus 104 l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~G~~~~~rr~~~~~~ 174 (228)
T PF13641_consen 104 LERLLAAFADPGVGAVGGPVFPDNDRNWLTRLQDLFFARWHLRF-RSGRRALGV--AFLSGSGMLFRRSALEEV 174 (228)
T ss_dssp HHHHHHHHHBSS--EEEEEEEETTCCCEEEE-TT--S-EETTTS--TT-B------S-B--TEEEEEHHHHHHH
T ss_pred HHHHHHHHHhCCCCeEeeeEeecCCCCHHHHHHHHHHhhhhhhh-hhhhcccce--eeccCcEEEEEHHHHHHh
Confidence 98888887 333333334332111 0000000 111100 011111111 346799999999999876
No 15
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=92.16 E-value=2.1 Score=37.26 Aligned_cols=135 Identities=16% Similarity=0.079 Sum_probs=70.2
Q ss_pred eEEEEEeecCCCCCchHHHHHH-HHHhhCCCEEEEeccccCCcchHHHHHHHHHHHhcCCceEEEEecCceEEeHHHHHH
Q 021079 172 IIIRFMIGHSATSNSILDKAID-SEDAQHKDFLRLEHIEGYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGMLAT 250 (317)
Q Consensus 172 i~v~FVvG~s~~~~~~~~~~I~-~E~~~~~DIl~ld~~DsY~nLs~Kt~~~f~wa~~~~~a~f~vKvDDDvfVnl~~L~~ 250 (317)
+.++.|-+.+. ++. ...+. .....+..+..++..+ ..+ ..|. ..+.++......+|++.+|+|..+..+.|..
T Consensus 29 ~eiivvdd~s~--d~t-~~~~~~~~~~~~~~v~~~~~~~-~~~-~g~~-~a~n~g~~~~~~d~i~~~D~D~~~~~~~l~~ 102 (229)
T cd04192 29 FEVILVDDHST--DGT-VQILEFAAAKPNFQLKILNNSR-VSI-SGKK-NALTTAIKAAKGDWIVTTDADCVVPSNWLLT 102 (229)
T ss_pred eEEEEEcCCCC--cCh-HHHHHHHHhCCCcceEEeeccC-ccc-chhH-HHHHHHHHHhcCCEEEEECCCcccCHHHHHH
Confidence 56666665543 222 23343 1222233455555544 222 2232 3345666667899999999999999988888
Q ss_pred HHhhcCCC-CceEEEEeecCcc---c-ccCCCCcccc-CccccCCCCCCCCcCcccceeeeCHHHHHHH
Q 021079 251 TLSRHRSK-PRVYIGCMKSGPV---L-SQKNVKYHEP-EYWKFGEEGNKYFRHATGQIYAISKDLATYI 313 (317)
Q Consensus 251 ~L~~~~~~-~~lY~G~~~~gpv---~-r~~~~Kwyvp-~~wkf~y~~~~YP~y~~G~~YviS~dla~~I 313 (317)
++..+... ..++.|.....+. . ......+... ... .......+|..+.|+++++++++...+
T Consensus 103 l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~rr~~~~~~ 170 (229)
T cd04192 103 FVAFIQKEQIGLVAGPVIYFKGKSLLAKFQRLDWLSLLGLI-AGSFGLGKPFMCNGANMAYRKEAFFEV 170 (229)
T ss_pred HHHHhhcCCCcEEeeeeeecCCccHHHHHHHHHHHHHHHHH-hhHHHhcCccccccceEEEEHHHHHHh
Confidence 88755433 3345554321100 0 0000000000 000 001123455567899999999998876
No 16
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=92.16 E-value=7.8 Score=38.10 Aligned_cols=84 Identities=15% Similarity=0.073 Sum_probs=47.9
Q ss_pred CeEEEEEeecCCCCCchHHHHHHHHHhhCC---CEEEEeccccCCcchHHHH---HHHHHHHh-cCCceEEEEecCceEE
Q 021079 171 GIIIRFMIGHSATSNSILDKAIDSEDAQHK---DFLRLEHIEGYHELSAKTK---IFFSTAVA-KWDADFYVKVDDDVHV 243 (317)
Q Consensus 171 ~i~v~FVvG~s~~~~~~~~~~I~~E~~~~~---DIl~ld~~DsY~nLs~Kt~---~~f~wa~~-~~~a~f~vKvDDDvfV 243 (317)
.+.+++|-..|. |++. ..+++-.+++. .+..+...+...+-.-|.. .+++.|.+ ..+.+|++.+|+|+.+
T Consensus 70 ~~eIIVVDd~St--D~T~-~i~~~~~~~~~~~~~i~vi~~~~~~~g~~Gk~~A~n~g~~~A~~~~~~gd~llflDaD~~~ 146 (384)
T TIGR03469 70 KLHVILVDDHST--DGTA-DIARAAARAYGRGDRLTVVSGQPLPPGWSGKLWAVSQGIAAARTLAPPADYLLLTDADIAH 146 (384)
T ss_pred ceEEEEEeCCCC--CcHH-HHHHHHHHhcCCCCcEEEecCCCCCCCCcchHHHHHHHHHHHhccCCCCCEEEEECCCCCC
Confidence 356777766654 2322 22222222333 4544443332223344533 35555554 3358999999999999
Q ss_pred eHHHHHHHHhhcCC
Q 021079 244 NLGMLATTLSRHRS 257 (317)
Q Consensus 244 nl~~L~~~L~~~~~ 257 (317)
..+.|...+.....
T Consensus 147 ~p~~l~~lv~~~~~ 160 (384)
T TIGR03469 147 GPDNLARLVARARA 160 (384)
T ss_pred ChhHHHHHHHHHHh
Confidence 99998888877643
No 17
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=91.61 E-value=3.2 Score=40.62 Aligned_cols=110 Identities=14% Similarity=0.108 Sum_probs=59.8
Q ss_pred eEEEEEEECCCCCHHHHHHHHHhhccCchhhhhhhcCCCeEEEEEeecCCCCCchHHHHHHHHHhhCCC--EEEEecccc
Q 021079 133 VFVVIGINTAFSSRKRRDSVRDTWMPQGEKLIQLEREKGIIIRFMIGHSATSNSILDKAIDSEDAQHKD--FLRLEHIEG 210 (317)
Q Consensus 133 ~~lvI~I~S~~~~~~rR~aIR~TW~~~~~~l~kL~~~~~i~v~FVvG~s~~~~~~~~~~I~~E~~~~~D--Il~ld~~Ds 210 (317)
+.+-|+|.+.-+...-.+.++ +...+.. ..+.++++...+. ++.. ..+++=.+.|.+ +..+.- ..
T Consensus 41 p~VSViiP~~nee~~l~~~L~-Sl~~q~Y--------p~~EIivvdd~s~--D~t~-~iv~~~~~~~p~~~i~~v~~-~~ 107 (373)
T TIGR03472 41 PPVSVLKPLHGDEPELYENLA-SFCRQDY--------PGFQMLFGVQDPD--DPAL-AVVRRLRADFPDADIDLVID-AR 107 (373)
T ss_pred CCeEEEEECCCCChhHHHHHH-HHHhcCC--------CCeEEEEEeCCCC--CcHH-HHHHHHHHhCCCCceEEEEC-CC
Confidence 345555554433333334443 3344321 2367777665543 3322 233333345665 322311 11
Q ss_pred CCcchHHHHHHHHHHHhcCCceEEEEecCceEEeHHHHHHHHhhcC
Q 021079 211 YHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGMLATTLSRHR 256 (317)
Q Consensus 211 Y~nLs~Kt~~~f~wa~~~~~a~f~vKvDDDvfVnl~~L~~~L~~~~ 256 (317)
-.....|.-...+ +.+..+.++++..|+|+.+..+.|...+....
T Consensus 108 ~~G~~~K~~~l~~-~~~~a~ge~i~~~DaD~~~~p~~L~~lv~~~~ 152 (373)
T TIGR03472 108 RHGPNRKVSNLIN-MLPHARHDILVIADSDISVGPDYLRQVVAPLA 152 (373)
T ss_pred CCCCChHHHHHHH-HHHhccCCEEEEECCCCCcChhHHHHHHHHhc
Confidence 1223356655443 34556899999999999999999988887764
No 18
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=91.58 E-value=2.1 Score=34.52 Aligned_cols=94 Identities=12% Similarity=0.122 Sum_probs=50.6
Q ss_pred HHHHHHhcCCceEEEEecCceEEeHHHHHHHHhhcCCCCc--eEEEEeecC----cccccC-CCCccccCcccc-CCCCC
Q 021079 221 FFSTAVAKWDADFYVKVDDDVHVNLGMLATTLSRHRSKPR--VYIGCMKSG----PVLSQK-NVKYHEPEYWKF-GEEGN 292 (317)
Q Consensus 221 ~f~wa~~~~~a~f~vKvDDDvfVnl~~L~~~L~~~~~~~~--lY~G~~~~g----pv~r~~-~~Kwyvp~~wkf-~y~~~ 292 (317)
...++.+..+.+|++.+|+|..+..+.|..++......+. +..|..... ...... ..++........ .....
T Consensus 69 ~~n~~~~~~~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (180)
T cd06423 69 ALNAGLRHAKGDIVVVLDADTILEPDALKRLVVPFFADPKVGAVQGRVRVRNGSENLLTRLQAIEYLSIFRLGRRAQSAL 148 (180)
T ss_pred HHHHHHHhcCCCEEEEECCCCCcChHHHHHHHHHhccCCCeeeEeeeEEEecCcCcceeccchheecceeeeeeehhhee
Confidence 3445555558999999999999998888887555543332 222332211 011000 001111000000 00012
Q ss_pred CCCcCcccceeeeCHHHHHHHH
Q 021079 293 KYFRHATGQIYAISKDLATYIS 314 (317)
Q Consensus 293 ~YP~y~~G~~YviS~dla~~I~ 314 (317)
.++..+.|.++++++++...+.
T Consensus 149 ~~~~~~~g~~~~~~~~~~~~~g 170 (180)
T cd06423 149 GGVLVLSGAFGAFRREALREVG 170 (180)
T ss_pred cceeecCchHHHHHHHHHHHhC
Confidence 3445688999999999988763
No 19
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=88.85 E-value=3.8 Score=34.77 Aligned_cols=134 Identities=10% Similarity=0.086 Sum_probs=72.6
Q ss_pred CCeEEEEEeecCCCCCchHHHHHHHHHhhCCCEEEEeccccCCcchHHHHHHHHHHHhcCCceEEEEecCceEEeHHHHH
Q 021079 170 KGIIIRFMIGHSATSNSILDKAIDSEDAQHKDFLRLEHIEGYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGMLA 249 (317)
Q Consensus 170 ~~i~v~FVvG~s~~~~~~~~~~I~~E~~~~~DIl~ld~~DsY~nLs~Kt~~~f~wa~~~~~a~f~vKvDDDvfVnl~~L~ 249 (317)
..+.++.|-+.+. ++. ...+.....++..+..+.+..++. +. .++..+......+|++.+|+|.....+.|.
T Consensus 28 ~~~eiivvdd~s~--d~t-~~~~~~~~~~~~~i~~i~~~~n~G----~~-~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~ 99 (181)
T cd04187 28 YDYEIIFVDDGST--DRT-LEILRELAARDPRVKVIRLSRNFG----QQ-AALLAGLDHARGDAVITMDADLQDPPELIP 99 (181)
T ss_pred CCeEEEEEeCCCC--ccH-HHHHHHHHhhCCCEEEEEecCCCC----cH-HHHHHHHHhcCCCEEEEEeCCCCCCHHHHH
Confidence 3456666655553 222 233444445566666666544332 21 333444444567999999999999988888
Q ss_pred HHHhhcCCCCceEEEEeecC--cccccCCCCccccCccccCCCCCCCCcCcccceeeeCHHHHHHHH
Q 021079 250 TTLSRHRSKPRVYIGCMKSG--PVLSQKNVKYHEPEYWKFGEEGNKYFRHATGQIYAISKDLATYIS 314 (317)
Q Consensus 250 ~~L~~~~~~~~lY~G~~~~g--pv~r~~~~Kwyvp~~wkf~y~~~~YP~y~~G~~YviS~dla~~I~ 314 (317)
..+........+.+|..... +..+.-..+.+.... .......-+...|+.+++++.+++.+.
T Consensus 100 ~l~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~r~~~~~i~ 163 (181)
T cd04187 100 EMLAKWEEGYDVVYGVRKNRKESWLKRLTSKLFYRLI---NKLSGVDIPDNGGDFRLMDRKVVDALL 163 (181)
T ss_pred HHHHHHhCCCcEEEEEecCCcchHHHHHHHHHHHHHH---HHHcCCCCCCCCCCEEEEcHHHHHHHH
Confidence 88877555556666654311 110000001010000 000112334567888999999998764
No 20
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=88.64 E-value=12 Score=32.55 Aligned_cols=79 Identities=16% Similarity=0.076 Sum_probs=46.4
Q ss_pred eEEEEEeecCCCCCchHHHHHHHHHhhCC--CEEEEeccccCCcchHHHHHHHHHHHhcCCceEEEEecCceEEeHHHHH
Q 021079 172 IIIRFMIGHSATSNSILDKAIDSEDAQHK--DFLRLEHIEGYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGMLA 249 (317)
Q Consensus 172 i~v~FVvG~s~~~~~~~~~~I~~E~~~~~--DIl~ld~~DsY~nLs~Kt~~~f~wa~~~~~a~f~vKvDDDvfVnl~~L~ 249 (317)
+.+++|...+. +.. ...+++-...|. ++......... ....|... +..+.+....+|++..|+|+.+..+.|.
T Consensus 31 ~eiivVdd~s~--d~t-~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~-~n~g~~~a~~d~i~~~D~D~~~~~~~l~ 105 (196)
T cd02520 31 YEILFCVQDED--DPA-IPVVRKLIAKYPNVDARLLIGGEKV-GINPKVNN-LIKGYEEARYDILVISDSDISVPPDYLR 105 (196)
T ss_pred eEEEEEeCCCc--chH-HHHHHHHHHHCCCCcEEEEecCCcC-CCCHhHHH-HHHHHHhCCCCEEEEECCCceEChhHHH
Confidence 67777776664 233 233444445554 33233221111 12344332 3455555678999999999999988888
Q ss_pred HHHhhc
Q 021079 250 TTLSRH 255 (317)
Q Consensus 250 ~~L~~~ 255 (317)
..+...
T Consensus 106 ~l~~~~ 111 (196)
T cd02520 106 RMVAPL 111 (196)
T ss_pred HHHHHh
Confidence 887764
No 21
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=88.27 E-value=15 Score=32.19 Aligned_cols=88 Identities=13% Similarity=0.053 Sum_probs=49.5
Q ss_pred CCeEEEEEeecCCCCCchHHHHHHHHHhhCCCEEEEeccccCCcchHHHHHHHHHHHhcCCceEEEEecCceEEeHHHHH
Q 021079 170 KGIIIRFMIGHSATSNSILDKAIDSEDAQHKDFLRLEHIEGYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGMLA 249 (317)
Q Consensus 170 ~~i~v~FVvG~s~~~~~~~~~~I~~E~~~~~DIl~ld~~DsY~nLs~Kt~~~f~wa~~~~~a~f~vKvDDDvfVnl~~L~ 249 (317)
..+.++.|-+.+. +.....++....++..+....-.+. ... .++..+.+....+|++.+|||..+.++.|.
T Consensus 30 ~~~evivvd~~s~---d~~~~~~~~~~~~~~~v~~i~~~~~--~~~----~a~N~g~~~a~~d~v~~lD~D~~~~~~~l~ 100 (249)
T cd02525 30 DLIEIIVVDGGST---DGTREIVQEYAAKDPRIRLIDNPKR--IQS----AGLNIGIRNSRGDIIIRVDAHAVYPKDYIL 100 (249)
T ss_pred CccEEEEEeCCCC---ccHHHHHHHHHhcCCeEEEEeCCCC--Cch----HHHHHHHHHhCCCEEEEECCCccCCHHHHH
Confidence 3456666655553 2233334444444333433332211 111 345666665589999999999999988888
Q ss_pred HHHhhcCCCC-ceEEEEe
Q 021079 250 TTLSRHRSKP-RVYIGCM 266 (317)
Q Consensus 250 ~~L~~~~~~~-~lY~G~~ 266 (317)
..+......+ .+..|+.
T Consensus 101 ~~~~~~~~~~~~~v~~~~ 118 (249)
T cd02525 101 ELVEALKRTGADNVGGPM 118 (249)
T ss_pred HHHHHHhcCCCCEEecce
Confidence 8886654333 3344443
No 22
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=84.12 E-value=7 Score=32.86 Aligned_cols=133 Identities=8% Similarity=-0.037 Sum_probs=70.6
Q ss_pred CeEEEEEeecCCCCCchHHHHHHHHHhhCCCEEEEeccccCCcchHHHHHHHHHHHhcCCceEEEEecCceEEeHHHHHH
Q 021079 171 GIIIRFMIGHSATSNSILDKAIDSEDAQHKDFLRLEHIEGYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGMLAT 250 (317)
Q Consensus 171 ~i~v~FVvG~s~~~~~~~~~~I~~E~~~~~DIl~ld~~DsY~nLs~Kt~~~f~wa~~~~~a~f~vKvDDDvfVnl~~L~~ 250 (317)
...++.+-..+. +.....++.-..++..+..+...++.. . -..+..+......+|++..|+|..+..+.|..
T Consensus 28 ~~eiivvd~~s~---d~~~~~~~~~~~~~~~~~~~~~~~n~G-~----~~a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~ 99 (185)
T cd04179 28 DYEIIVVDDGST---DGTAEIARELAARVPRVRVIRLSRNFG-K----GAAVRAGFKAARGDIVVTMDADLQHPPEDIPK 99 (185)
T ss_pred CEEEEEEcCCCC---CChHHHHHHHHHhCCCeEEEEccCCCC-c----cHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHH
Confidence 345555544443 233444555556666665555554432 1 13344444544569999999999999998888
Q ss_pred HHhh-cCCCCceEEEEeecCcccccCCCCcccc-----CccccCCCCCCCCcCcccceeeeCHHHHHHH
Q 021079 251 TLSR-HRSKPRVYIGCMKSGPVLSQKNVKYHEP-----EYWKFGEEGNKYFRHATGQIYAISKDLATYI 313 (317)
Q Consensus 251 ~L~~-~~~~~~lY~G~~~~gpv~r~~~~Kwyvp-----~~wkf~y~~~~YP~y~~G~~YviS~dla~~I 313 (317)
++.. ......+.+|.......- ....++.. ..+.+..-...-.+...|+.+++++++++.|
T Consensus 100 l~~~~~~~~~~~v~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i 166 (185)
T cd04179 100 LLEKLLEGGADVVIGSRFVRGGG--AGMPLLRRLGSRLFNFLIRLLLGVRISDTQSGFRLFRREVLEAL 166 (185)
T ss_pred HHHHHhccCCcEEEEEeecCCCc--ccchHHHHHHHHHHHHHHHHHcCCCCcCCCCceeeeHHHHHHHH
Confidence 8886 344456666653311100 00011100 0000000011122335677889999999887
No 23
>cd06532 Glyco_transf_25 Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of glycosyltransferases involved in LOS biosynthesis. The members include the beta(1,4) galactosyltransferases: Lgt2 of Moraxella catarrhalis, LgtB and LgtE of Neisseria gonorrhoeae and Lic2A of Haemophilus influenzae. M. catarrhalis Lgt2 catalyzes the addition of galactose (Gal) to the growing chain of LOS on the cell surface. N. gonorrhoeae LgtB and LgtE link Gal-beta(1,4) to GlcNAc (N-acetylglucosamine) and Glc (glucose), respectively. The genes encoding LgtB and LgtE are two genes of a five gene locus involved in the synthesis of gonococcal LOS. LgtE is believed to perform the first step in LOS biosynthesis.
Probab=82.68 E-value=10 Score=31.43 Aligned_cols=96 Identities=11% Similarity=0.048 Sum_probs=51.1
Q ss_pred EEEECCCCCHHHHHHHHHhhccCchhhhhhhcCCCeEEEEEeecCCCCCchHHHHHHHHHhhCCCEEE-EeccccCCcch
Q 021079 137 IGINTAFSSRKRRDSVRDTWMPQGEKLIQLEREKGIIIRFMIGHSATSNSILDKAIDSEDAQHKDFLR-LEHIEGYHELS 215 (317)
Q Consensus 137 I~I~S~~~~~~rR~aIR~TW~~~~~~l~kL~~~~~i~v~FVvG~s~~~~~~~~~~I~~E~~~~~DIl~-ld~~DsY~nLs 215 (317)
|.|.+-+...+||+.+++..... ++.+.|+-|......+ ...+......+..... -+..-+.-.-.
T Consensus 2 i~vInL~~~~~Rr~~~~~~~~~~-----------~~~~~~~~Avd~~~~~--~~~~~~~~~~~~~~~~~~~l~~gEiGC~ 68 (128)
T cd06532 2 IFVINLDRSTDRRERMEAQLAAL-----------GLDFEFFDAVDGKDLS--EEELAALYDALFLPRYGRPLTPGEIGCF 68 (128)
T ss_pred EEEEECCCCHHHHHHHHHHHHHc-----------CCCeEEEeccccccCC--HHHHHHHhHHHhhhhcCCCCChhhHHHH
Confidence 34667788889999999854433 4556677666542111 1111111110000000 01111122223
Q ss_pred HHHHHHHHHHHhcCCceEEEEecCceEEeHH
Q 021079 216 AKTKIFFSTAVAKWDADFYVKVDDDVHVNLG 246 (317)
Q Consensus 216 ~Kt~~~f~wa~~~~~a~f~vKvDDDvfVnl~ 246 (317)
+-.+..++.+++ .+.++.+-..||+.+..+
T Consensus 69 lSH~~~w~~~~~-~~~~~alIlEDDv~~~~~ 98 (128)
T cd06532 69 LSHYKLWQKIVE-SNLEYALILEDDAILDPD 98 (128)
T ss_pred HHHHHHHHHHHH-cCCCeEEEEccCcEECCC
Confidence 455556666665 366899999999999887
No 24
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=81.12 E-value=25 Score=32.36 Aligned_cols=57 Identities=7% Similarity=0.016 Sum_probs=36.3
Q ss_pred hCCCEEEEeccccCCcchHHHHHHHHHHHhcCCceEEEEecCceEEeHHHHHHHHhhcC
Q 021079 198 QHKDFLRLEHIEGYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGMLATTLSRHR 256 (317)
Q Consensus 198 ~~~DIl~ld~~DsY~nLs~Kt~~~f~wa~~~~~a~f~vKvDDDvfVnl~~L~~~L~~~~ 256 (317)
.+..|..+...++.. ...=.-.++++|.+ .+++|++..|||..+..+.|..++....
T Consensus 43 ~~~~i~~i~~~~N~G-~a~a~N~Gi~~a~~-~~~d~i~~lD~D~~~~~~~l~~l~~~~~ 99 (281)
T TIGR01556 43 RGQKIALIHLGDNQG-IAGAQNQGLDASFR-RGVQGVLLLDQDSRPGNAFLAAQWKLLS 99 (281)
T ss_pred cCCCeEEEECCCCcc-hHHHHHHHHHHHHH-CCCCEEEEECCCCCCCHHHHHHHHHHHH
Confidence 345565555443321 12222235666654 3789999999999999888877776653
No 25
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=80.47 E-value=22 Score=30.42 Aligned_cols=133 Identities=14% Similarity=0.099 Sum_probs=65.6
Q ss_pred CeEEEEEeecCCCCCchHHHHHHHHHhhCCC-EEEEeccccCCcchHHHHHHHHHHHhcCCceEEEEecCceEEeHHHHH
Q 021079 171 GIIIRFMIGHSATSNSILDKAIDSEDAQHKD-FLRLEHIEGYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGMLA 249 (317)
Q Consensus 171 ~i~v~FVvG~s~~~~~~~~~~I~~E~~~~~D-Il~ld~~DsY~nLs~Kt~~~f~wa~~~~~a~f~vKvDDDvfVnl~~L~ 249 (317)
.+.+++|-..+. ++ ....+++-..+++. +.......+. .... .+..+......+|++..|+|..+.++.|.
T Consensus 27 ~~eiiVvddgS~--d~-t~~~~~~~~~~~~~~~~~~~~~~~~-G~~~----~~n~g~~~~~g~~v~~ld~Dd~~~~~~l~ 98 (214)
T cd04196 27 NDELIISDDGST--DG-TVEIIKEYIDKDPFIIILIRNGKNL-GVAR----NFESLLQAADGDYVFFCDQDDIWLPDKLE 98 (214)
T ss_pred CeEEEEEeCCCC--CC-cHHHHHHHHhcCCceEEEEeCCCCc-cHHH----HHHHHHHhCCCCEEEEECCCcccChhHHH
Confidence 466777765553 22 22334433444442 3333333222 2222 22233445689999999999999988888
Q ss_pred HHHhh-cC-CCCceEEEEee----cCcccccCCCCccccCccc--cCCCCCCCCcCcccceeeeCHHHHHHHH
Q 021079 250 TTLSR-HR-SKPRVYIGCMK----SGPVLSQKNVKYHEPEYWK--FGEEGNKYFRHATGQIYAISKDLATYIS 314 (317)
Q Consensus 250 ~~L~~-~~-~~~~lY~G~~~----~gpv~r~~~~Kwyvp~~wk--f~y~~~~YP~y~~G~~YviS~dla~~I~ 314 (317)
.++.. .. +...++.|.+. .+.+... .+....... ...........+.|+++++.++++..+.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 168 (214)
T cd04196 99 RLLKAFLKDDKPLLVYSDLELVDENGNPIGE---SFFEYQKIKPGTSFNNLLFQNVVTGCTMAFNRELLELAL 168 (214)
T ss_pred HHHHHHhcCCCceEEecCcEEECCCCCCccc---ccccccccCCccCHHHHHHhCccCCceeeEEHHHHHhhc
Confidence 88886 22 22334444322 1111110 000000000 0000111234567889999999988763
No 26
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=79.81 E-value=32 Score=30.20 Aligned_cols=52 Identities=17% Similarity=0.177 Sum_probs=33.7
Q ss_pred CCCEEEEeccccCCcchHHHHHHHHHHHhcCCceEEEEecCceEEeHHHHHHHH
Q 021079 199 HKDFLRLEHIEGYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGMLATTL 252 (317)
Q Consensus 199 ~~DIl~ld~~DsY~nLs~Kt~~~f~wa~~~~~a~f~vKvDDDvfVnl~~L~~~L 252 (317)
...+..+...++.. ...=.-.+++.|... +++|++..|||+.+.++.|..++
T Consensus 46 ~~~i~~i~~~~n~G-~~~a~N~g~~~a~~~-~~d~v~~lD~D~~~~~~~l~~l~ 97 (237)
T cd02526 46 SEKIELIHLGENLG-IAKALNIGIKAALEN-GADYVLLFDQDSVPPPDMVEKLL 97 (237)
T ss_pred CCcEEEEECCCcee-hHHhhhHHHHHHHhC-CCCEEEEECCCCCcCHhHHHHHH
Confidence 34455554433322 333333455555442 78999999999999998888885
No 27
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=79.52 E-value=54 Score=30.56 Aligned_cols=40 Identities=23% Similarity=0.268 Sum_probs=28.7
Q ss_pred HHHHHhcCCceEEEEecCceEEeHHHHHHHHhhcCCCCce
Q 021079 222 FSTAVAKWDADFYVKVDDDVHVNLGMLATTLSRHRSKPRV 261 (317)
Q Consensus 222 f~wa~~~~~a~f~vKvDDDvfVnl~~L~~~L~~~~~~~~l 261 (317)
...+...-..+|++..|+|+.+..+-|..++......+..
T Consensus 75 ~N~g~~~A~gd~i~fLD~D~~~~~~wL~~ll~~l~~~~~~ 114 (299)
T cd02510 75 RIAGARAATGDVLVFLDSHCEVNVGWLEPLLARIAENRKT 114 (299)
T ss_pred HHHHHHHccCCEEEEEeCCcccCccHHHHHHHHHHhCCCe
Confidence 3344444578999999999999988887777765444333
No 28
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=79.24 E-value=36 Score=32.85 Aligned_cols=134 Identities=8% Similarity=0.047 Sum_probs=71.5
Q ss_pred CCeEEEEEeecCCCCCchHHHHHHHHHhhCCC-EEEEeccccCCcchHHHHHHHHHHHhcCCceEEEEecCceEEeHHHH
Q 021079 170 KGIIIRFMIGHSATSNSILDKAIDSEDAQHKD-FLRLEHIEGYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGML 248 (317)
Q Consensus 170 ~~i~v~FVvG~s~~~~~~~~~~I~~E~~~~~D-Il~ld~~DsY~nLs~Kt~~~f~wa~~~~~a~f~vKvDDDvfVnl~~L 248 (317)
..+.+++|-..|. |.+. ..+++-.+.+++ ++...+..++. ... ++..+.++.+.+|++-+|+|.-.+++.+
T Consensus 37 ~~~EIIvVDDgS~--D~T~-~il~~~~~~~~~~v~~i~~~~n~G-~~~----A~~~G~~~A~gd~vv~~DaD~q~~p~~i 108 (325)
T PRK10714 37 KEYEILLIDDGSS--DNSA-EMLVEAAQAPDSHIVAILLNRNYG-QHS----AIMAGFSHVTGDLIITLDADLQNPPEEI 108 (325)
T ss_pred CCEEEEEEeCCCC--CcHH-HHHHHHHhhcCCcEEEEEeCCCCC-HHH----HHHHHHHhCCCCEEEEECCCCCCCHHHH
Confidence 3567888876664 3332 223333334444 44344443332 111 2233334457899999999999999999
Q ss_pred HHHHhhcCCCCceEEEEeec--CcccccCCCCccccCccccCCCCCCCCcCcccceeeeCHHHHHHHH
Q 021079 249 ATTLSRHRSKPRVYIGCMKS--GPVLSQKNVKYHEPEYWKFGEEGNKYFRHATGQIYAISKDLATYIS 314 (317)
Q Consensus 249 ~~~L~~~~~~~~lY~G~~~~--gpv~r~~~~Kwyvp~~wkf~y~~~~YP~y~~G~~YviS~dla~~I~ 314 (317)
..+++......++..|.... .+..|.-.++.+----.. . .+..++.+.+| ..++++++++.|.
T Consensus 109 ~~l~~~~~~~~DvV~~~r~~~~~~~~r~~~s~~~~~l~~~-~-~g~~~~d~~~g-fr~~~r~~~~~l~ 173 (325)
T PRK10714 109 PRLVAKADEGYDVVGTVRQNRQDSWFRKTASKMINRLIQR-T-TGKAMGDYGCM-LRAYRRHIVDAML 173 (325)
T ss_pred HHHHHHHHhhCCEEEEEEcCCCCcHHHHHHHHHHHHHHHH-H-cCCCCCCCCcC-eEEEcHHHHHHHH
Confidence 99888765434555454321 223332222222110000 0 13345555444 4589999999874
No 29
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=78.90 E-value=9 Score=32.19 Aligned_cols=89 Identities=12% Similarity=-0.017 Sum_probs=50.7
Q ss_pred HHHHHHHhcCCceEEEEecCceEEeHHHHHHHHhhcC--CCCceEEEEeec--CcccccCCCCccccCccccCCCCCCCC
Q 021079 220 IFFSTAVAKWDADFYVKVDDDVHVNLGMLATTLSRHR--SKPRVYIGCMKS--GPVLSQKNVKYHEPEYWKFGEEGNKYF 295 (317)
Q Consensus 220 ~~f~wa~~~~~a~f~vKvDDDvfVnl~~L~~~L~~~~--~~~~lY~G~~~~--gpv~r~~~~Kwyvp~~wkf~y~~~~YP 295 (317)
..+..+.+..+.+|++.+|||..+..+.+...+.... +...+..|.+.. +.. .....+...+.. ...-...
T Consensus 65 ~a~n~~~~~a~~~~v~~ld~D~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~-~~~~~~~~~~~~----~~~~~~~ 139 (202)
T cd06433 65 DAMNKGIALATGDIIGFLNSDDTLLPGALLAVVAAFAEHPEVDVVYGDVLLVDENG-RVIGRRRPPPFL----DKFLLYG 139 (202)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcccCchHHHHHHHHHHhCCCccEEEeeeEEEcCCC-CcccCCCCcchh----hhHHhhc
Confidence 3445556656889999999999999999998874432 334555565321 111 001111001111 0111233
Q ss_pred cCcccceeeeCHHHHHHH
Q 021079 296 RHATGQIYAISKDLATYI 313 (317)
Q Consensus 296 ~y~~G~~YviS~dla~~I 313 (317)
.+..|++.++++++...+
T Consensus 140 ~~~~~~~~~~~~~~~~~~ 157 (202)
T cd06433 140 MPICHQATFFRRSLFEKY 157 (202)
T ss_pred CcccCcceEEEHHHHHHh
Confidence 446677888999988766
No 30
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=78.29 E-value=41 Score=28.58 Aligned_cols=35 Identities=14% Similarity=0.105 Sum_probs=28.1
Q ss_pred HHHHHHhcCCceEEEEecCceEEeHHHHHHHHhhc
Q 021079 221 FFSTAVAKWDADFYVKVDDDVHVNLGMLATTLSRH 255 (317)
Q Consensus 221 ~f~wa~~~~~a~f~vKvDDDvfVnl~~L~~~L~~~ 255 (317)
++.++.+....+|++..|+|..+..+.|...++..
T Consensus 74 a~n~g~~~a~~d~i~~ld~D~~~~~~~l~~~~~~~ 108 (202)
T cd04184 74 ATNSALELATGEFVALLDHDDELAPHALYEVVKAL 108 (202)
T ss_pred HHHHHHHhhcCCEEEEECCCCcCChHHHHHHHHHH
Confidence 34455555578999999999999999888888876
No 31
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=78.25 E-value=4.4 Score=35.67 Aligned_cols=92 Identities=14% Similarity=0.018 Sum_probs=54.7
Q ss_pred hHHHHHHHHHHHhcCCceEEEEecCceEEeHHHHHHHHhhcCCCCceEEEEeecCcccccCCCCc---------cccCcc
Q 021079 215 SAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGMLATTLSRHRSKPRVYIGCMKSGPVLSQKNVKY---------HEPEYW 285 (317)
Q Consensus 215 s~Kt~~~f~wa~~~~~a~f~vKvDDDvfVnl~~L~~~L~~~~~~~~lY~G~~~~gpv~r~~~~Kw---------yvp~~w 285 (317)
..|+-.......+..+.++++-.|+|+.|+.+.|.+++..+...+--.+.++. ......+-| ..+.-+
T Consensus 16 N~Kv~nL~~~~~~~a~~d~~~~~DsDi~v~p~~L~~lv~~l~~p~vglVt~~~---~~~~~~~~~~~l~~~~~~~~~~~~ 92 (175)
T PF13506_consen 16 NPKVNNLAQGLEAGAKYDYLVISDSDIRVPPDYLRELVAPLADPGVGLVTGLP---RGVPARGFWSRLEAAFFNFLPGVL 92 (175)
T ss_pred ChHHHHHHHHHHhhCCCCEEEEECCCeeECHHHHHHHHHHHhCCCCcEEEecc---cccCCcCHHHHHHHHHHhHHHHHH
Confidence 45665555443333689999999999999999999999887542211222211 111111111 111111
Q ss_pred ccCCCCCCCCcCcccceeeeCHHHHHHH
Q 021079 286 KFGEEGNKYFRHATGQIYAISKDLATYI 313 (317)
Q Consensus 286 kf~y~~~~YP~y~~G~~YviS~dla~~I 313 (317)
.. -.-.++|.|+.+++.+++++.+
T Consensus 93 ~a----~~~~~~~~G~~m~~rr~~L~~~ 116 (175)
T PF13506_consen 93 QA----LGGAPFAWGGSMAFRREALEEI 116 (175)
T ss_pred HH----hcCCCceecceeeeEHHHHHHc
Confidence 00 1246779999999999998765
No 32
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=77.39 E-value=10 Score=35.97 Aligned_cols=63 Identities=17% Similarity=0.176 Sum_probs=42.0
Q ss_pred CCCEEEEeccccCCcchHHHHHHHHHHHhcCCceEEEEecCceEEeHHHHHHHHhhcCCCCceEE
Q 021079 199 HKDFLRLEHIEGYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGMLATTLSRHRSKPRVYI 263 (317)
Q Consensus 199 ~~DIl~ld~~DsY~nLs~Kt~~~f~wa~~~~~a~f~vKvDDDvfVnl~~L~~~L~~~~~~~~lY~ 263 (317)
+.++..+...++.- -..=.-.+++.|....+. |++-.++|+.+..+.|.++++.....+...+
T Consensus 55 ~~~v~~i~~~~NlG-~agg~n~g~~~a~~~~~~-~~l~LN~D~~~~~~~l~~ll~~~~~~~~~~~ 117 (305)
T COG1216 55 FPNVRLIENGENLG-FAGGFNRGIKYALAKGDD-YVLLLNPDTVVEPDLLEELLKAAEEDPAAGV 117 (305)
T ss_pred CCcEEEEEcCCCcc-chhhhhHHHHHHhcCCCc-EEEEEcCCeeeChhHHHHHHHHHHhCCCCeE
Confidence 77888776655442 011111466666663322 9999999999999999999998876544433
No 33
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=73.22 E-value=47 Score=26.77 Aligned_cols=29 Identities=21% Similarity=0.287 Sum_probs=24.6
Q ss_pred CCceEEEEecCceEEeHHHHHHHHhhcCC
Q 021079 229 WDADFYVKVDDDVHVNLGMLATTLSRHRS 257 (317)
Q Consensus 229 ~~a~f~vKvDDDvfVnl~~L~~~L~~~~~ 257 (317)
.+.+|++..|||..+..+.+..++.....
T Consensus 73 ~~~~~i~~~D~D~~~~~~~l~~~~~~~~~ 101 (166)
T cd04186 73 AKGDYVLLLNPDTVVEPGALLELLDAAEQ 101 (166)
T ss_pred CCCCEEEEECCCcEECccHHHHHHHHHHh
Confidence 38999999999999999988888875543
No 34
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=73.09 E-value=51 Score=28.85 Aligned_cols=75 Identities=12% Similarity=0.113 Sum_probs=45.5
Q ss_pred eEEEEEeecCCCCCchHHHHHHHHHhhCCCEEEEeccccCCcchHHHHHHHHHHHhcCCceEEEEecCceEEeHHHHHHH
Q 021079 172 IIIRFMIGHSATSNSILDKAIDSEDAQHKDFLRLEHIEGYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGMLATT 251 (317)
Q Consensus 172 i~v~FVvG~s~~~~~~~~~~I~~E~~~~~DIl~ld~~DsY~nLs~Kt~~~f~wa~~~~~a~f~vKvDDDvfVnl~~L~~~ 251 (317)
..+++|...+. +.....+ .+...+..+.+..- +. .-|.. .+..+....+.+|++.+|||+.+..+.|...
T Consensus 29 ~eiivvdd~s~---d~~~~~l-~~~~~~~~~~v~~~-~~----~g~~~-a~n~g~~~a~~d~v~~lD~D~~~~~~~l~~l 98 (235)
T cd06434 29 LEIIVVTDGDD---EPYLSIL-SQTVKYGGIFVITV-PH----PGKRR-ALAEGIRHVTTDIVVLLDSDTVWPPNALPEM 98 (235)
T ss_pred CEEEEEeCCCC---hHHHHHH-HhhccCCcEEEEec-CC----CChHH-HHHHHHHHhCCCEEEEECCCceeChhHHHHH
Confidence 45566655443 2233323 34455666655542 11 22332 2333444458999999999999999999998
Q ss_pred HhhcC
Q 021079 252 LSRHR 256 (317)
Q Consensus 252 L~~~~ 256 (317)
+....
T Consensus 99 ~~~~~ 103 (235)
T cd06434 99 LKPFE 103 (235)
T ss_pred HHhcc
Confidence 88875
No 35
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=72.56 E-value=10 Score=37.37 Aligned_cols=83 Identities=11% Similarity=0.174 Sum_probs=51.3
Q ss_pred HHHHHHhcCCceEEEEecCceEEeHH---HHHHHHhhcCCCCceEEEEeecCcccccCCCCccccCccccCCCCCCCC-c
Q 021079 221 FFSTAVAKWDADFYVKVDDDVHVNLG---MLATTLSRHRSKPRVYIGCMKSGPVLSQKNVKYHEPEYWKFGEEGNKYF-R 296 (317)
Q Consensus 221 ~f~wa~~~~~a~f~vKvDDDvfVnl~---~L~~~L~~~~~~~~lY~G~~~~gpv~r~~~~Kwyvp~~wkf~y~~~~YP-~ 296 (317)
++.|+.+..++++++-++||..+.++ -+.+.|..+...+++++=+-.+ +.+.+..+.. + +...|. .
T Consensus 88 aln~vF~~~~~~~vIILEDDl~~sPdFf~yf~~~l~~y~~D~~v~~ISa~N-----dnG~~~~~~~----~-~~~lyrs~ 157 (334)
T cd02514 88 ALTQTFNLFGYSFVIILEDDLDIAPDFFSYFQATLPLLEEDPSLWCISAWN-----DNGKEHFVDD----T-PSLLYRTD 157 (334)
T ss_pred HHHHHHHhcCCCEEEEECCCCccCHhHHHHHHHHHHHHhcCCCEEEEEeec-----cCCcccccCC----C-cceEEEec
Confidence 66666665579999999999999998 6677777776667776533221 1111111100 0 222333 4
Q ss_pred CcccceeeeCHHHHHHH
Q 021079 297 HATGQIYAISKDLATYI 313 (317)
Q Consensus 297 y~~G~~YviS~dla~~I 313 (317)
|+.|.|+++.+++-..+
T Consensus 158 ff~glGWml~r~~W~e~ 174 (334)
T cd02514 158 FFPGLGWMLTRKLWKEL 174 (334)
T ss_pred CCCchHHHHHHHHHHHh
Confidence 66788888888776543
No 36
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=72.05 E-value=62 Score=27.65 Aligned_cols=79 Identities=15% Similarity=-0.026 Sum_probs=44.7
Q ss_pred eEEEEEeecCCCCCchHHHHHHHHHhhCCCEEEEeccccCCcchHHHHHHHHHHHhcCCceEEEEecCceEEeHHHHHHH
Q 021079 172 IIIRFMIGHSATSNSILDKAIDSEDAQHKDFLRLEHIEGYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGMLATT 251 (317)
Q Consensus 172 i~v~FVvG~s~~~~~~~~~~I~~E~~~~~DIl~ld~~DsY~nLs~Kt~~~f~wa~~~~~a~f~vKvDDDvfVnl~~L~~~ 251 (317)
..++.+-+.+. +.....+.+....++ +..+...+ ......-.-.++++|. ..+.+|++..|||..+..+.|..+
T Consensus 27 ~eiiivD~~s~---d~t~~~~~~~~~~~~-i~~~~~~~-n~g~~~~~n~~~~~a~-~~~~d~v~~ld~D~~~~~~~l~~l 100 (202)
T cd04185 27 DHIIVIDNAST---DGTAEWLTSLGDLDN-IVYLRLPE-NLGGAGGFYEGVRRAY-ELGYDWIWLMDDDAIPDPDALEKL 100 (202)
T ss_pred ceEEEEECCCC---cchHHHHHHhcCCCc-eEEEECcc-ccchhhHHHHHHHHHh-ccCCCEEEEeCCCCCcChHHHHHH
Confidence 34444444432 233344444444443 33333322 2222333344566666 468899999999999998877777
Q ss_pred HhhcC
Q 021079 252 LSRHR 256 (317)
Q Consensus 252 L~~~~ 256 (317)
+....
T Consensus 101 ~~~~~ 105 (202)
T cd04185 101 LAYAD 105 (202)
T ss_pred HHHHh
Confidence 66654
No 37
>PRK11204 N-glycosyltransferase; Provisional
Probab=72.03 E-value=81 Score=30.91 Aligned_cols=68 Identities=19% Similarity=0.213 Sum_probs=44.7
Q ss_pred HHHHHHHHHhhCCCEEEEeccccCCcchHHHHHHHHHHHhcCCceEEEEecCceEEeHHHHHHHHhhcCCCCc
Q 021079 188 LDKAIDSEDAQHKDFLRLEHIEGYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGMLATTLSRHRSKPR 260 (317)
Q Consensus 188 ~~~~I~~E~~~~~DIl~ld~~DsY~nLs~Kt~~~f~wa~~~~~a~f~vKvDDDvfVnl~~L~~~L~~~~~~~~ 260 (317)
..+.+++..+++..+...+..+ |.. |. ..+..+.+..+.+|++..|+|..+..+.|...+......++
T Consensus 97 t~~~l~~~~~~~~~v~~i~~~~---n~G-ka-~aln~g~~~a~~d~i~~lDaD~~~~~d~L~~l~~~~~~~~~ 164 (420)
T PRK11204 97 TGEILDRLAAQIPRLRVIHLAE---NQG-KA-NALNTGAAAARSEYLVCIDGDALLDPDAAAYMVEHFLHNPR 164 (420)
T ss_pred HHHHHHHHHHhCCcEEEEEcCC---CCC-HH-HHHHHHHHHcCCCEEEEECCCCCCChhHHHHHHHHHHhCCC
Confidence 3344555555666666555433 322 43 34566666678999999999999999998888877643343
No 38
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=70.48 E-value=21 Score=31.47 Aligned_cols=36 Identities=19% Similarity=0.224 Sum_probs=28.8
Q ss_pred HHHHHHhc--CCceEEEEecCceEEeHHHHHHHHhhcC
Q 021079 221 FFSTAVAK--WDADFYVKVDDDVHVNLGMLATTLSRHR 256 (317)
Q Consensus 221 ~f~wa~~~--~~a~f~vKvDDDvfVnl~~L~~~L~~~~ 256 (317)
++.++.+. .+.+|++..|+|+.+..+.|..++....
T Consensus 73 a~n~g~~~a~~~~d~i~~lD~D~~~~~~~l~~l~~~~~ 110 (236)
T cd06435 73 ALNYALERTAPDAEIIAVIDADYQVEPDWLKRLVPIFD 110 (236)
T ss_pred HHHHHHHhcCCCCCEEEEEcCCCCcCHHHHHHHHHHhc
Confidence 45666553 3579999999999999999999887764
No 39
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=70.15 E-value=29 Score=30.10 Aligned_cols=84 Identities=12% Similarity=0.041 Sum_probs=47.1
Q ss_pred CCceEEEEecCceEEeHHHHHHHHhh-cCCCCceEEEEee-cCcccccCCCCcc---cc-C-ccccCCCCCCCCcCcccc
Q 021079 229 WDADFYVKVDDDVHVNLGMLATTLSR-HRSKPRVYIGCMK-SGPVLSQKNVKYH---EP-E-YWKFGEEGNKYFRHATGQ 301 (317)
Q Consensus 229 ~~a~f~vKvDDDvfVnl~~L~~~L~~-~~~~~~lY~G~~~-~gpv~r~~~~Kwy---vp-~-~wkf~y~~~~YP~y~~G~ 301 (317)
...+|++.+|+|..+.++.|..++.. ..++..+..|... ..... ..-.++ .+ . .+.-......-.++++|+
T Consensus 77 a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (224)
T cd06442 77 ARGDVIVVMDADLSHPPEYIPELLEAQLEGGADLVIGSRYVEGGGV--EGWGLKRKLISRGANLLARLLLGRKVSDPTSG 154 (224)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCEEEEeeeecCCcc--CCCcHHHHHHHHHHHHHHHHHcCCCCCCCCCc
Confidence 34599999999999999988888887 3445566666432 11110 000011 00 0 000000001112357888
Q ss_pred eeeeCHHHHHHHH
Q 021079 302 IYAISKDLATYIS 314 (317)
Q Consensus 302 ~YviS~dla~~I~ 314 (317)
+++++++++..|.
T Consensus 155 ~~~~~r~~~~~ig 167 (224)
T cd06442 155 FRAYRREVLEKLI 167 (224)
T ss_pred cchhhHHHHHHHh
Confidence 8899999998773
No 40
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=69.56 E-value=80 Score=31.69 Aligned_cols=41 Identities=12% Similarity=0.331 Sum_probs=32.3
Q ss_pred HHHHHHhcCCceEEEEecCceEEeHHHHHHHHhhcCCCCce
Q 021079 221 FFSTAVAKWDADFYVKVDDDVHVNLGMLATTLSRHRSKPRV 261 (317)
Q Consensus 221 ~f~wa~~~~~a~f~vKvDDDvfVnl~~L~~~L~~~~~~~~l 261 (317)
++.++.+..+.+|++..|+|..+..+.|...+......+++
T Consensus 122 AlN~gl~~s~g~~v~~~DaD~~~~~d~L~~l~~~f~~~~~v 162 (439)
T TIGR03111 122 ALNAAIYNSIGKYIIHIDSDGKLHKDAIKNMVTRFENNPDI 162 (439)
T ss_pred HHHHHHHHccCCEEEEECCCCCcChHHHHHHHHHHHhCCCe
Confidence 45666666788999999999999999999888776544443
No 41
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=62.83 E-value=55 Score=28.48 Aligned_cols=39 Identities=26% Similarity=0.330 Sum_probs=29.7
Q ss_pred HHHHHhcCCceEEEEecCceEEeHHHHHHHHhhcCCCCc
Q 021079 222 FSTAVAKWDADFYVKVDDDVHVNLGMLATTLSRHRSKPR 260 (317)
Q Consensus 222 f~wa~~~~~a~f~vKvDDDvfVnl~~L~~~L~~~~~~~~ 260 (317)
+..+.+..+.+|++.+|+|.++..+.|..++......++
T Consensus 76 ~n~~~~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~ 114 (234)
T cd06421 76 LNNALAHTTGDFVAILDADHVPTPDFLRRTLGYFLDDPK 114 (234)
T ss_pred HHHHHHhCCCCEEEEEccccCcCccHHHHHHHHHhcCCC
Confidence 344445458899999999999999988888887654343
No 42
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=62.69 E-value=98 Score=26.80 Aligned_cols=89 Identities=12% Similarity=0.026 Sum_probs=52.4
Q ss_pred CCeEEEEEeecCCCCCchHHHHHHHHHhhCCCEEE-EeccccCCcchHHHHHHHHHHHhcCCceEEEEecCceEEeHHHH
Q 021079 170 KGIIIRFMIGHSATSNSILDKAIDSEDAQHKDFLR-LEHIEGYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGML 248 (317)
Q Consensus 170 ~~i~v~FVvG~s~~~~~~~~~~I~~E~~~~~DIl~-ld~~DsY~nLs~Kt~~~f~wa~~~~~a~f~vKvDDDvfVnl~~L 248 (317)
..+.++.|-+.|. + .....+++..+.++..++ +....+. ... .++..+.+....+|++.+|+|..+.++.+
T Consensus 29 ~~~eiivvdd~S~--D-~t~~~~~~~~~~~~~~i~~i~~~~n~-G~~----~a~~~g~~~a~gd~i~~ld~D~~~~~~~l 100 (211)
T cd04188 29 FSYEIIVVDDGSK--D-GTAEVARKLARKNPALIRVLTLPKNR-GKG----GAVRAGMLAARGDYILFADADLATPFEEL 100 (211)
T ss_pred CCEEEEEEeCCCC--C-chHHHHHHHHHhCCCcEEEEEcccCC-CcH----HHHHHHHHHhcCCEEEEEeCCCCCCHHHH
Confidence 3466776666653 2 233344555555665422 3333222 122 23333334446699999999999999999
Q ss_pred HHHHhhc-CCCCceEEEEe
Q 021079 249 ATTLSRH-RSKPRVYIGCM 266 (317)
Q Consensus 249 ~~~L~~~-~~~~~lY~G~~ 266 (317)
..++... .....+.+|..
T Consensus 101 ~~l~~~~~~~~~~~v~g~r 119 (211)
T cd04188 101 EKLEEALKTSGYDIAIGSR 119 (211)
T ss_pred HHHHHHHhccCCcEEEEEe
Confidence 9988873 34456777763
No 43
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=54.74 E-value=79 Score=30.77 Aligned_cols=132 Identities=12% Similarity=0.104 Sum_probs=75.3
Q ss_pred eEEEEEeecCCCCCchHHHHHHHHHhhCCCEEEEeccccCCcchHHHHHHHHHHHhcCCceEEEEecCceEEeHHHHHHH
Q 021079 172 IIIRFMIGHSATSNSILDKAIDSEDAQHKDFLRLEHIEGYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGMLATT 251 (317)
Q Consensus 172 i~v~FVvG~s~~~~~~~~~~I~~E~~~~~DIl~ld~~DsY~nLs~Kt~~~f~wa~~~~~a~f~vKvDDDvfVnl~~L~~~ 251 (317)
..+..|...+ .+...+.+.+-..++++.+.+.+. .+-...-...+.++...-+.++++..|-|+.+..+.|...
T Consensus 85 ~evivv~d~~---~d~~~~~~~~~~~~~~~~~~~~~~---~~~~~gK~~al~~~l~~~~~d~V~~~DaD~~~~~d~l~~~ 158 (439)
T COG1215 85 YEVIVVDDGS---TDETYEILEELGAEYGPNFRVIYP---EKKNGGKAGALNNGLKRAKGDVVVILDADTVPEPDALREL 158 (439)
T ss_pred ceEEEECCCC---ChhHHHHHHHHHhhcCcceEEEec---cccCccchHHHHHHHhhcCCCEEEEEcCCCCCChhHHHHH
Confidence 4556665533 244445556666666544444422 1112222345567777667999999999999999999999
Q ss_pred HhhcCCCCce-EEEEeecCcccccCC--CCcc----ccCc-------cccCCCCCCCCcCcccceeeeCHHHHHHHH
Q 021079 252 LSRHRSKPRV-YIGCMKSGPVLSQKN--VKYH----EPEY-------WKFGEEGNKYFRHATGQIYAISKDLATYIS 314 (317)
Q Consensus 252 L~~~~~~~~l-Y~G~~~~gpv~r~~~--~Kwy----vp~~-------wkf~y~~~~YP~y~~G~~YviS~dla~~I~ 314 (317)
+......+.. ..|. |..+... ..+. .-++ +.... .......|.|...++.+++++.+.
T Consensus 159 ~~~f~~~~~~~v~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~G~~~~~rr~aL~~~g 230 (439)
T COG1215 159 VSPFEDPPVGAVVGT----PRIRNRPDPSNLLGRIQAIEYLSAFYFRLRAAS-KGGLISFLSGSSSAFRRSALEEVG 230 (439)
T ss_pred HhhhcCCCeeEEeCC----ceeeecCChhhhcchhcchhhhhhHHHhhhhhh-hcCCeEEEcceeeeEEHHHHHHhC
Confidence 9998655444 3332 1111110 0010 0000 00011 123577799999999999988764
No 44
>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2
Probab=53.20 E-value=26 Score=29.99 Aligned_cols=77 Identities=13% Similarity=0.196 Sum_probs=44.2
Q ss_pred EEEEecCceEEeHHHHHHHHhhcCCCCceEEEEeecCcccccCCCC----ccccCc-ccc-----CCCCCCCCcCcccce
Q 021079 233 FYVKVDDDVHVNLGMLATTLSRHRSKPRVYIGCMKSGPVLSQKNVK----YHEPEY-WKF-----GEEGNKYFRHATGQI 302 (317)
Q Consensus 233 f~vKvDDDvfVnl~~L~~~L~~~~~~~~lY~G~~~~gpv~r~~~~K----wyvp~~-wkf-----~y~~~~YP~y~~G~~ 302 (317)
|++-+|+|+.+..+-|...+.... .+++-+.. +++.-.+... +..-++ +.. .......+.++.|++
T Consensus 1 ~v~~~DaDt~~~~d~l~~~~~~~~-~~~~~~vq---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 76 (193)
T PF13632_consen 1 YVLFLDADTRLPPDFLERLVAALE-DPKVDAVQ---GPIIFRNRGSLLTRLQDFEYAISHGLSRLSQSSLGRPLFLSGSG 76 (193)
T ss_pred CEEEEcCCCCCChHHHHHHHHHHh-CCCceEEE---ccEEecCCCChhheeehhhhhhhhhhhHHHHHhcCCCccccCcc
Confidence 688999999999999988888776 33332222 1111011111 111110 000 001123466789999
Q ss_pred eeeCHHHHHHH
Q 021079 303 YAISKDLATYI 313 (317)
Q Consensus 303 YviS~dla~~I 313 (317)
.++++++.+.+
T Consensus 77 ~~~r~~~l~~v 87 (193)
T PF13632_consen 77 MLFRREALREV 87 (193)
T ss_pred eeeeHHHHHHh
Confidence 99999999876
No 45
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=49.40 E-value=2.8e+02 Score=27.69 Aligned_cols=82 Identities=15% Similarity=0.166 Sum_probs=50.2
Q ss_pred CeEEEEEeecCCCCCchHHHHHHHHHhhCCCEEEEeccccCCcchHHHHHHHHHHHhcCCceEEEEecCceEEeHHHHHH
Q 021079 171 GIIIRFMIGHSATSNSILDKAIDSEDAQHKDFLRLEHIEGYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGMLAT 250 (317)
Q Consensus 171 ~i~v~FVvG~s~~~~~~~~~~I~~E~~~~~DIl~ld~~DsY~nLs~Kt~~~f~wa~~~~~a~f~vKvDDDvfVnl~~L~~ 250 (317)
.+.+++|-..+. +...+.+++...++..+......+ |.. |. .+++.+....+.+|++..|+|..+..+.|..
T Consensus 104 ~~eIivVdDgs~---D~t~~~~~~~~~~~~~v~vv~~~~---n~G-ka-~AlN~gl~~a~~d~iv~lDAD~~~~~d~L~~ 175 (444)
T PRK14583 104 NIEVIAINDGSS---DDTAQVLDALLAEDPRLRVIHLAH---NQG-KA-IALRMGAAAARSEYLVCIDGDALLDKNAVPY 175 (444)
T ss_pred CeEEEEEECCCC---ccHHHHHHHHHHhCCCEEEEEeCC---CCC-HH-HHHHHHHHhCCCCEEEEECCCCCcCHHHHHH
Confidence 356555544442 233344555555666555444322 222 43 3456666667899999999999999999988
Q ss_pred HHhhcCCCCc
Q 021079 251 TLSRHRSKPR 260 (317)
Q Consensus 251 ~L~~~~~~~~ 260 (317)
.+......++
T Consensus 176 lv~~~~~~~~ 185 (444)
T PRK14583 176 LVAPLIANPR 185 (444)
T ss_pred HHHHHHhCCC
Confidence 8876643333
No 46
>COG4092 Predicted glycosyltransferase involved in capsule biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=48.55 E-value=88 Score=30.40 Aligned_cols=81 Identities=15% Similarity=0.103 Sum_probs=60.1
Q ss_pred cCCCeEEEEEeecCCCCCchHHHHHHHHHhhCCCEEEEeccc--cCCcchHHHHHHHHHHHhcCCceEEEEecCceEEeH
Q 021079 168 REKGIIIRFMIGHSATSNSILDKAIDSEDAQHKDFLRLEHIE--GYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNL 245 (317)
Q Consensus 168 ~~~~i~v~FVvG~s~~~~~~~~~~I~~E~~~~~DIl~ld~~D--sY~nLs~Kt~~~f~wa~~~~~a~f~vKvDDDvfVnl 245 (317)
...++.++|+=|.+ ..++.|..=.....-.+.+++.+ .+..-+.-...+..|+++.|+..+++..|-|+|+-.
T Consensus 35 s~~~~~vi~~~~~~-----~~d~~i~~~i~~~~~~~yl~~~s~~~F~s~~~c~n~ga~Ysh~~~~Sn~vlFlDvDc~~S~ 109 (346)
T COG4092 35 SSDITMVICLRAHE-----VMDRLIRSYIDPMPRVLYLDFGSPEPFASETICANNGADYSHEKCESNLVLFLDVDCFGSS 109 (346)
T ss_pred ccccEEEEEEecch-----hHHHHHHHHhccccceEEEecCCCccccchhhhhhccchhhhccccccEEEEEeccccccH
Confidence 34566677776654 56677777777777777787643 344334555567789998899999999999999999
Q ss_pred HHHHHHHh
Q 021079 246 GMLATTLS 253 (317)
Q Consensus 246 ~~L~~~L~ 253 (317)
++..+.|.
T Consensus 110 dnF~k~l~ 117 (346)
T COG4092 110 DNFAKMLS 117 (346)
T ss_pred HHHHHHHH
Confidence 99999883
No 47
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=47.47 E-value=65 Score=26.81 Aligned_cols=34 Identities=18% Similarity=0.260 Sum_probs=27.6
Q ss_pred HHHHHhcCCceEEEEecCceEEeHHHHHHHHhhc
Q 021079 222 FSTAVAKWDADFYVKVDDDVHVNLGMLATTLSRH 255 (317)
Q Consensus 222 f~wa~~~~~a~f~vKvDDDvfVnl~~L~~~L~~~ 255 (317)
+..+.+....+|++..|+|..+..+-|...+...
T Consensus 71 ~n~g~~~a~g~~i~~lD~D~~~~~~~l~~~~~~~ 104 (182)
T cd06420 71 RNKAIAAAKGDYLIFIDGDCIPHPDFIADHIELA 104 (182)
T ss_pred HHHHHHHhcCCEEEEEcCCcccCHHHHHHHHHHh
Confidence 3455555678999999999999988888888776
No 48
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=46.45 E-value=1.8e+02 Score=24.57 Aligned_cols=89 Identities=16% Similarity=0.070 Sum_probs=53.3
Q ss_pred HHHHHHHh-cCCceEEEEecCceEEeHHHHHHHHhhcCCCCceEEEEeecCcccccCCCCcccc---Ccccc-------C
Q 021079 220 IFFSTAVA-KWDADFYVKVDDDVHVNLGMLATTLSRHRSKPRVYIGCMKSGPVLSQKNVKYHEP---EYWKF-------G 288 (317)
Q Consensus 220 ~~f~wa~~-~~~a~f~vKvDDDvfVnl~~L~~~L~~~~~~~~lY~G~~~~gpv~r~~~~Kwyvp---~~wkf-------~ 288 (317)
.+++++.. ..+.+|++.+|.|..+.++.|..++..+.....+..|+... ++++..|.-. .+|.+ +
T Consensus 70 ~g~~~a~~~~~~~d~v~~~DaD~~~~p~~l~~l~~~~~~~~~~v~g~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (183)
T cd06438 70 FGFRHLLNLADDPDAVVVFDADNLVDPNALEELNARFAAGARVVQAYYNS----KNPDDSWITRLYAFAFLVFNRLRPLG 145 (183)
T ss_pred HHHHHHHhcCCCCCEEEEEcCCCCCChhHHHHHHHHHhhCCCeeEEEEee----eCCccCHHHHHHHHHHHHHHHHHHHH
Confidence 44555542 24689999999999999988888888776555666665431 1122223110 00000 0
Q ss_pred CCCCCCCcCcccceeeeCHHHHHH
Q 021079 289 EEGNKYFRHATGQIYAISKDLATY 312 (317)
Q Consensus 289 y~~~~YP~y~~G~~YviS~dla~~ 312 (317)
...-.-+.++.|.++++++++++.
T Consensus 146 ~~~~~~~~~~~G~~~~~rr~~l~~ 169 (183)
T cd06438 146 RSNLGLSCQLGGTGMCFPWAVLRQ 169 (183)
T ss_pred HHHcCCCeeecCchhhhHHHHHHh
Confidence 000122335789999999999876
No 49
>PHA01631 hypothetical protein
Probab=44.91 E-value=53 Score=29.43 Aligned_cols=76 Identities=20% Similarity=0.235 Sum_probs=46.1
Q ss_pred hHHHHHHHHHHHh---cCCceEEEEecCceEEeHHHHHHHHhhcCCCCceEEEEeecCcccccCCCCccccCccccCCCC
Q 021079 215 SAKTKIFFSTAVA---KWDADFYVKVDDDVHVNLGMLATTLSRHRSKPRVYIGCMKSGPVLSQKNVKYHEPEYWKFGEEG 291 (317)
Q Consensus 215 s~Kt~~~f~wa~~---~~~a~f~vKvDDDvfVnl~~L~~~L~~~~~~~~lY~G~~~~gpv~r~~~~Kwyvp~~wkf~y~~ 291 (317)
.+....++..+.+ .-+-|.++.+|-|++|+.-. .. .+.+.++.=|. |.. -.|.
T Consensus 53 r~RIAk~Ll~Iln~~s~i~DDi~~iIDSDV~ipn~~--~~----~~~~~v~t~Ci---------------PA~---~kp~ 108 (176)
T PHA01631 53 WLRIAKQLLTIVNFAKNIEDDIIAIIDSDLIIPNLR--EI----IPNERVFTPCY---------------WLY---YDWA 108 (176)
T ss_pred HHHHHHHHHHHHHhhccCCccEEEEeccceEecCcc--cc----ccCCCccceee---------------eee---ecCC
Confidence 3444445555544 24678888899999997542 11 22233444342 110 1133
Q ss_pred CCCCcCcccceeeeCHHHHHHHH
Q 021079 292 NKYFRHATGQIYAISKDLATYIS 314 (317)
Q Consensus 292 ~~YP~y~~G~~YviS~dla~~I~ 314 (317)
+.+-+||.|.-|++.+..+.++.
T Consensus 109 ~~v~~FC~sTNf~~pr~~l~~l~ 131 (176)
T PHA01631 109 NEIRPFCSGTNYIFRKSLLPYLE 131 (176)
T ss_pred CcEEEEEccccEEeeHHHhHHHH
Confidence 45668999999999999988764
No 50
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=43.48 E-value=4e+02 Score=28.97 Aligned_cols=128 Identities=13% Similarity=0.101 Sum_probs=69.4
Q ss_pred CCCeEEEEEEECCCCCHHH-HHHHHHhhccCchhhhhhhcCCCeEEEEEeecCCCCCchHH--HHHHHHHhhCC---CEE
Q 021079 130 RPKVFVVIGINTAFSSRKR-RDSVRDTWMPQGEKLIQLEREKGIIIRFMIGHSATSNSILD--KAIDSEDAQHK---DFL 203 (317)
Q Consensus 130 ~~~~~lvI~I~S~~~~~~r-R~aIR~TW~~~~~~l~kL~~~~~i~v~FVvG~s~~~~~~~~--~~I~~E~~~~~---DIl 203 (317)
.....+.|+|.+--+..++ +..|+.++.+-.. ......+.+ |++.-+.+++.... .++.+=.++|+ .|.
T Consensus 121 ~~~~~VaVliP~yNEd~~~v~~~L~a~~~Sl~~----~~~~~~~e~-~vLdD~~d~~~~~~e~~~~~~L~~~~~~~~~i~ 195 (691)
T PRK05454 121 PPEARTAILMPIYNEDPARVFAGLRAMYESLAA----TGHGAHFDF-FILSDTRDPDIAAAEEAAWLELRAELGGEGRIF 195 (691)
T ss_pred CCCCceEEEEeCCCCChHHHHHHHHHHHHHHHh----cCCCCCEEE-EEEECCCChhHHHHHHHHHHHHHHhcCCCCcEE
Confidence 4455677777776665543 4667777654211 001123444 88876543211110 11222223343 343
Q ss_pred EEeccccCCcchHHHHHHHHHHHh-cCCceEEEEecCceEEeHHHHHHHHhhcCCCCceEEEEee
Q 021079 204 RLEHIEGYHELSAKTKIFFSTAVA-KWDADFYVKVDDDVHVNLGMLATTLSRHRSKPRVYIGCMK 267 (317)
Q Consensus 204 ~ld~~DsY~nLs~Kt~~~f~wa~~-~~~a~f~vKvDDDvfVnl~~L~~~L~~~~~~~~lY~G~~~ 267 (317)
...- ..|.-.|.-..-.+... ..+++|++-.|-|+.+..+.|..++......++ +|-+.
T Consensus 196 yr~R---~~n~~~KaGNl~~~~~~~~~~~eyivvLDADs~m~~d~L~~lv~~m~~dP~--vGlVQ 255 (691)
T PRK05454 196 YRRR---RRNVGRKAGNIADFCRRWGGAYDYMVVLDADSLMSGDTLVRLVRLMEANPR--AGLIQ 255 (691)
T ss_pred EEEC---CcCCCccHHHHHHHHHhcCCCcCEEEEEcCCCCCCHHHHHHHHHHHhhCcC--EEEEe
Confidence 3222 23444566554444433 247799999999999999999999887643443 34444
No 51
>PF03071 GNT-I: GNT-I family; InterPro: IPR004139 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GNT-I, GLCNAC-T I) 2.4.1.101 from EC transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide. This is an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus, and is probably distributed in all tissues. The catalytic domain is located at the C terminus []. These proteins are members of the glycosyl transferase family 13 (GH13 from CAZY); GO: 0003827 alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0006487 protein N-linked glycosylation, 0000139 Golgi membrane; PDB: 2APC_A 2AM4_A 1FO9_A 2AM3_A 1FOA_A 2AM5_A 1FO8_A.
Probab=43.29 E-value=2.1e+02 Score=29.39 Aligned_cols=88 Identities=9% Similarity=0.138 Sum_probs=42.6
Q ss_pred HHHHHHHHHh----cCCceEEEEecCceEEeHHHHHHHHhhc---CCCCceEEEEeecCcccccCCCCccccCccccCCC
Q 021079 218 TKIFFSTAVA----KWDADFYVKVDDDVHVNLGMLATTLSRH---RSKPRVYIGCMKSGPVLSQKNVKYHEPEYWKFGEE 290 (317)
Q Consensus 218 t~~~f~wa~~----~~~a~f~vKvDDDvfVnl~~L~~~L~~~---~~~~~lY~G~~~~gpv~r~~~~Kwyvp~~wkf~y~ 290 (317)
.-.=++||.+ ..+++.++-+.||.-+-+|=+.=+...+ ...+.+|+=.-++ |.+...++... .|
T Consensus 175 IA~HYk~aL~~vF~~~~~~~vIIlEDDL~isPDFf~Yf~~~~~ll~~D~sl~ciSawN-----dnG~~~~~~~~----~~ 245 (434)
T PF03071_consen 175 IARHYKWALSQVFNKFKYSSVIILEDDLEISPDFFEYFSATLPLLENDPSLWCISAWN-----DNGKEHFVDDS----RP 245 (434)
T ss_dssp HHHHHHHHHHHHHHTS--SEEEEEETTEEE-TTHHHHHHHHHHHHHH-TTEEEEES-------TT-BGGGS-TT-----T
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEecCcccCccHHHHHHHHHHHHhcCCCeEEEEccc-----cCCccccccCC----Cc
Confidence 3444556665 2478899999999999776443332222 2345677644332 12222222220 11
Q ss_pred CCCCC-cCcccceeeeCHHHHHHHH
Q 021079 291 GNKYF-RHATGQIYAISKDLATYIS 314 (317)
Q Consensus 291 ~~~YP-~y~~G~~YviS~dla~~I~ 314 (317)
...|- .|..|.|+.|++++=..|.
T Consensus 246 ~~lyRsdffpglGWml~r~~w~el~ 270 (434)
T PF03071_consen 246 SLLYRSDFFPGLGWMLTRELWDELE 270 (434)
T ss_dssp T-EEEESS---SSEEEEHHHHHHHG
T ss_pred cceEecccCCchHHHhhHHHHHhhc
Confidence 11221 1356999999999877664
No 52
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=42.61 E-value=1.2e+02 Score=26.07 Aligned_cols=42 Identities=14% Similarity=0.174 Sum_probs=29.6
Q ss_pred HHHHhcCCceEEEEecCceEEeHHHHHHHHhhcCCCCceEEEE
Q 021079 223 STAVAKWDADFYVKVDDDVHVNLGMLATTLSRHRSKPRVYIGC 265 (317)
Q Consensus 223 ~wa~~~~~a~f~vKvDDDvfVnl~~L~~~L~~~~~~~~lY~G~ 265 (317)
..+......+|++.+|+|..+..+.|...+....... ..+|.
T Consensus 65 n~g~~~a~~~~i~~~D~D~~~~~~~l~~l~~~~~~~~-~~~~~ 106 (221)
T cd02522 65 NAGAAAARGDWLLFLHADTRLPPDWDAAIIETLRADG-AVAGA 106 (221)
T ss_pred HHHHHhccCCEEEEEcCCCCCChhHHHHHHHHhhcCC-cEEEE
Confidence 3444445689999999999999888888766654433 34443
No 53
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=39.93 E-value=2.6e+02 Score=24.61 Aligned_cols=35 Identities=14% Similarity=0.145 Sum_probs=27.5
Q ss_pred HHHHHhcCCceEEEEecCceEEeHHHHHHHHhhcC
Q 021079 222 FSTAVAKWDADFYVKVDDDVHVNLGMLATTLSRHR 256 (317)
Q Consensus 222 f~wa~~~~~a~f~vKvDDDvfVnl~~L~~~L~~~~ 256 (317)
+..+.+....+|++.+|+|+.+..+.|..++....
T Consensus 101 ~n~gi~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~ 135 (251)
T cd06439 101 LNRALALATGEIVVFTDANALLDPDALRLLVRHFA 135 (251)
T ss_pred HHHHHHHcCCCEEEEEccccCcCHHHHHHHHHHhc
Confidence 44455555679999999999999888888887764
No 54
>smart00786 SHR3_chaperone ER membrane protein SH3. This family of proteins are membrane localised chaperones that are required for correct plasma membrane localisation of amino acid permeases (AAPs) PUBMED:15623581. Shr3 prevents AAPs proteins from aggregating and assists in their correct folding. In the absence of Shr3, AAPs are retained in the ER.
Probab=39.87 E-value=25 Score=32.22 Aligned_cols=29 Identities=34% Similarity=0.565 Sum_probs=23.4
Q ss_pred cchhHHHHHHHHHHHHHHHhcC------CCCCCCC
Q 021079 12 STKWIPFVCLFCFALGILFSNL------TWNPPES 40 (317)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~ 40 (317)
+-...+++|-.||++|++|++- ||+.+.+
T Consensus 6 ~~~t~lIl~~tsF~lGvlf~~~pyD~~~Lw~~~~t 40 (196)
T smart00786 6 SFGTALIIGSTSFFLGILFANFPYDYPLLWSPDPT 40 (196)
T ss_pred ccccchhhhhHHHHHHHHHhcCccccchhcCCCCC
Confidence 4456799999999999999983 5877654
No 55
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=38.67 E-value=3.3e+02 Score=25.34 Aligned_cols=78 Identities=10% Similarity=0.055 Sum_probs=48.7
Q ss_pred CCCeEEEEEeecCCCCCchHHHHHHHHHhhCCCEEEEecc--ccCCcchHHHHHHHHHHHhcCCceEEEEecCceEEeHH
Q 021079 169 EKGIIIRFMIGHSATSNSILDKAIDSEDAQHKDFLRLEHI--EGYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLG 246 (317)
Q Consensus 169 ~~~i~v~FVvG~s~~~~~~~~~~I~~E~~~~~DIl~ld~~--DsY~nLs~Kt~~~f~wa~~~~~a~f~vKvDDDvfVnl~ 246 (317)
...+.+++|=+.+. ...+..|.+-.+.++-+..+... ....+.+. +..-+++....+|++..|.|+.+..+
T Consensus 32 ~~~~eiIvvd~~s~---~~~~~~l~~~~~~~~~~~~i~~~~~~~~f~~a~----arN~g~~~A~~d~l~flD~D~i~~~~ 104 (281)
T PF10111_consen 32 DPDFEIIVVDDGSS---DEFDEELKKLCEKNGFIRYIRHEDNGEPFSRAK----ARNIGAKYARGDYLIFLDADCIPSPD 104 (281)
T ss_pred CCCEEEEEEECCCc---hhHHHHHHHHHhccCceEEEEcCCCCCCcCHHH----HHHHHHHHcCCCEEEEEcCCeeeCHH
Confidence 45677777766653 34445566666666655222221 11222221 22344444589999999999999999
Q ss_pred HHHHHHh
Q 021079 247 MLATTLS 253 (317)
Q Consensus 247 ~L~~~L~ 253 (317)
.+...+.
T Consensus 105 ~i~~~~~ 111 (281)
T PF10111_consen 105 FIEKLLN 111 (281)
T ss_pred HHHHHHH
Confidence 9999998
No 56
>PF08229 SHR3_chaperone: ER membrane protein SH3 ; InterPro: IPR013248 This family of proteins are membrane localised chaperones that are required for correct plasma membrane localisation of amino acid permeases (AAPs) []. Shr3 prevents AAPs proteins from aggregating and assists in their correct folding. In the absence of Shr3, AAPs are retained in the ER.
Probab=37.67 E-value=20 Score=32.85 Aligned_cols=29 Identities=38% Similarity=0.667 Sum_probs=23.5
Q ss_pred cchhHHHHHHHHHHHHHHHhc------CCCCCCCC
Q 021079 12 STKWIPFVCLFCFALGILFSN------LTWNPPES 40 (317)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~ 40 (317)
+-+..+++|-.||++|++|++ -||+.+.+
T Consensus 6 ~~~t~lIi~stsF~LG~lf~~~~yD~~~Lw~~~~t 40 (196)
T PF08229_consen 6 SFGTGLIICSTSFLLGVLFSNWPYDYPTLWSSPPT 40 (196)
T ss_pred ceeeeeehHhhHHHHHHHHHcccchhHHhcCCCCC
Confidence 445678999999999999998 35887655
No 57
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=36.88 E-value=67 Score=29.11 Aligned_cols=32 Identities=19% Similarity=0.297 Sum_probs=26.7
Q ss_pred CCceEEEEecCceEEeHHHHHHHHhhcCCCCc
Q 021079 229 WDADFYVKVDDDVHVNLGMLATTLSRHRSKPR 260 (317)
Q Consensus 229 ~~a~f~vKvDDDvfVnl~~L~~~L~~~~~~~~ 260 (317)
.+.+|++.+|.|+.+..+.|..++......++
T Consensus 72 a~~e~i~~~DaD~~~~~~~l~~l~~~~~~~p~ 103 (244)
T cd04190 72 DDPEFILLVDADTKFDPDSIVQLYKAMDKDPE 103 (244)
T ss_pred CCCCEEEEECCCCcCCHhHHHHHHHHHHhCCC
Confidence 48999999999999999998888877643444
No 58
>PF11119 DUF2633: Protein of unknown function (DUF2633); InterPro: IPR022576 This family is conserved largely in Proteobacteria. Several members are named as YfgG. The function is not known.
Probab=36.87 E-value=38 Score=25.18 Aligned_cols=28 Identities=11% Similarity=0.326 Sum_probs=19.1
Q ss_pred CCccCCCcccccchhHHHHHHHHHHHHHHHh
Q 021079 1 MKYRTSTTTIISTKWIPFVCLFCFALGILFS 31 (317)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 (317)
||.|..++ -+||+|++.+..|+.=++++
T Consensus 1 ~r~k~~~~---mtriVLLISfiIlfgRl~Y~ 28 (59)
T PF11119_consen 1 MRRKKNSR---MTRIVLLISFIILFGRLIYS 28 (59)
T ss_pred CCCcccch---HHHHHHHHHHHHHHHHHHHH
Confidence 56665555 46899999988888645444
No 59
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=36.72 E-value=3e+02 Score=24.38 Aligned_cols=36 Identities=14% Similarity=0.087 Sum_probs=29.5
Q ss_pred HHHHHHhcCCceEEEEecCceEEeHHHHHHHHhhcC
Q 021079 221 FFSTAVAKWDADFYVKVDDDVHVNLGMLATTLSRHR 256 (317)
Q Consensus 221 ~f~wa~~~~~a~f~vKvDDDvfVnl~~L~~~L~~~~ 256 (317)
.+..+.+....+|++.+|+|..+..+.|...+....
T Consensus 75 a~n~g~~~a~gd~i~~~DaD~~~~~~~l~~~~~~~~ 110 (241)
T cd06427 75 ACNYALAFARGEYVVIYDAEDAPDPDQLKKAVAAFA 110 (241)
T ss_pred HHHHHHHhcCCCEEEEEcCCCCCChHHHHHHHHHHH
Confidence 445555656789999999999999999999888764
No 60
>PF06306 CgtA: Beta-1,4-N-acetylgalactosaminyltransferase (CgtA); InterPro: IPR010446 This family consists of several beta-1,4-N-acetylgalactosaminyltransferase proteins from Campylobacter jejuni [].
Probab=36.02 E-value=2.3e+02 Score=28.19 Aligned_cols=78 Identities=10% Similarity=0.122 Sum_probs=51.7
Q ss_pred EeecCCCCCchHHHHHHHHHhhCCCEEEEecc-----ccCCcchHHHHHHHHHHHh-cCCceEEEEecCceEEeHHHHHH
Q 021079 177 MIGHSATSNSILDKAIDSEDAQHKDFLRLEHI-----EGYHELSAKTKIFFSTAVA-KWDADFYVKVDDDVHVNLGMLAT 250 (317)
Q Consensus 177 VvG~s~~~~~~~~~~I~~E~~~~~DIl~ld~~-----DsY~nLs~Kt~~~f~wa~~-~~~a~f~vKvDDDvfVnl~~L~~ 250 (317)
|+|-....+++ .+.|.+=.++|-+++-+-+. ..-.....+...++.|+.. .+..+|++|+|.|-......|..
T Consensus 117 VI~yNdc~D~t-~Eiil~fckkyP~fip~~Ypy~v~~~n~~~~~n~l~~YYNy~ls~ipk~~w~iKID~DhIy~~~KL~k 195 (347)
T PF06306_consen 117 VIGYNDCTDGT-EEIILEFCKKYPSFIPIKYPYEVIIKNPKSEENSLYNYYNYVLSFIPKNEWAIKIDADHIYDTKKLYK 195 (347)
T ss_pred EEEeecCCCCH-HHHHHHHHHhCcccccccCcchhhccCCchhhhhhhhhhhhhhcccccceEEEEeccceeecHHHHhh
Confidence 44444322333 44566667889998876321 1112223456667888888 47899999999999999999977
Q ss_pred HHhhc
Q 021079 251 TLSRH 255 (317)
Q Consensus 251 ~L~~~ 255 (317)
..-..
T Consensus 196 sfY~p 200 (347)
T PF06306_consen 196 SFYIP 200 (347)
T ss_pred hheee
Confidence 65544
No 61
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=35.66 E-value=3e+02 Score=24.06 Aligned_cols=34 Identities=12% Similarity=0.117 Sum_probs=26.8
Q ss_pred HHHHHhcCCceEEEEecCceEEeHHHHHHHHhhc
Q 021079 222 FSTAVAKWDADFYVKVDDDVHVNLGMLATTLSRH 255 (317)
Q Consensus 222 f~wa~~~~~a~f~vKvDDDvfVnl~~L~~~L~~~ 255 (317)
+..+....+.+|++.+|.|+.+..+.|...+...
T Consensus 79 ~n~g~~~a~~~~i~~~DaD~~~~~~~l~~~~~~~ 112 (232)
T cd06437 79 LAEGMKVAKGEYVAIFDADFVPPPDFLQKTPPYF 112 (232)
T ss_pred HHHHHHhCCCCEEEEEcCCCCCChHHHHHhhhhh
Confidence 4555565689999999999999999988854433
No 62
>PF04666 Glyco_transf_54: N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region; InterPro: IPR006759 The complex-type of oligosaccharides are synthesised through elongation by glycosyltransferases after trimming of the precursor oligosaccharides transferred to proteins in the endoplasmic reticulum. N-Acetylglucosaminyltransferases (GnTs) take part in the formation of branches in the biosynthesis of complex-type sugar chains. In vertebrates, six GnTs, designated as GnT-I to -VI, which catalyse the transfer of GlcNAc to the core mannose residues of Asn-linked sugar chains, have been identified. GnT-IV (2.4.1.145 from EC) catalyzes the transfer of GlcNAc from UDP-GlcNAc to the GlcNAc1-2Man1-3 arm of core oligosaccharide [Gn2(22)core oligosaccharide] and forms a GlcNAc1-4(GlcNAc1-2)Man1-3 structure on the core oligosaccharide (Gn3(2,4,2)core oligosaccharide). In some members the conserved region occupies all but the very N-terminal, where there is a signal sequence on all members. For other members the conserved region does not occupy the entire protein but is still to the N-terminal end of the protein [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0016020 membrane
Probab=35.36 E-value=2.8e+02 Score=26.88 Aligned_cols=28 Identities=25% Similarity=0.455 Sum_probs=20.0
Q ss_pred CceEEEEecCceEEeHH---HHHHHHhhcCC
Q 021079 230 DADFYVKVDDDVHVNLG---MLATTLSRHRS 257 (317)
Q Consensus 230 ~a~f~vKvDDDvfVnl~---~L~~~L~~~~~ 257 (317)
.++||+-..|||..-.. .+..++.....
T Consensus 169 ~~~YyL~LEDDVia~~~f~~~i~~~v~~~~~ 199 (297)
T PF04666_consen 169 LGDYYLQLEDDVIAAPGFLSRIKRFVEAWES 199 (297)
T ss_pred cCCeEEEecCCeEechhHHHHHHHHHHHhcC
Confidence 68899999999998865 44445555433
No 63
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=35.09 E-value=2.8e+02 Score=23.41 Aligned_cols=87 Identities=8% Similarity=0.046 Sum_probs=48.9
Q ss_pred eEEEEEeecCCCCCchHHHHHHHHHhhCCCEEEEeccccCCcchHHHHHHHHHHHhcCCceEEEEecCceEEeHHHHHHH
Q 021079 172 IIIRFMIGHSATSNSILDKAIDSEDAQHKDFLRLEHIEGYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGMLATT 251 (317)
Q Consensus 172 i~v~FVvG~s~~~~~~~~~~I~~E~~~~~DIl~ld~~DsY~nLs~Kt~~~f~wa~~~~~a~f~vKvDDDvfVnl~~L~~~ 251 (317)
..+++|.-.+. ++.....++.-.+++. +..+...++.. + -..+..+....+.+|++..|+|..+..+.|...
T Consensus 30 ~eiiivdd~ss--~d~t~~~~~~~~~~~~-i~~i~~~~n~G----~-~~a~N~g~~~a~gd~i~~lD~Dd~~~~~~l~~~ 101 (201)
T cd04195 30 DEVVLVKDGPV--TQSLNEVLEEFKRKLP-LKVVPLEKNRG----L-GKALNEGLKHCTYDWVARMDTDDISLPDRFEKQ 101 (201)
T ss_pred cEEEEEECCCC--chhHHHHHHHHHhcCC-eEEEEcCcccc----H-HHHHHHHHHhcCCCEEEEeCCccccCcHHHHHH
Confidence 44544443322 3444444444445555 44444433211 1 113445555568899999999999999988888
Q ss_pred HhhcCCCC--ceEEEEe
Q 021079 252 LSRHRSKP--RVYIGCM 266 (317)
Q Consensus 252 L~~~~~~~--~lY~G~~ 266 (317)
+.....++ .++.|.+
T Consensus 102 ~~~~~~~~~~~~~~~~~ 118 (201)
T cd04195 102 LDFIEKNPEIDIVGGGV 118 (201)
T ss_pred HHHHHhCCCeEEEcccE
Confidence 87754332 3444443
No 64
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=33.84 E-value=2.1e+02 Score=21.79 Aligned_cols=34 Identities=9% Similarity=0.077 Sum_probs=25.5
Q ss_pred HHHHHhcCCceEEEEecCceEEeHHHHHHHHhhc
Q 021079 222 FSTAVAKWDADFYVKVDDDVHVNLGMLATTLSRH 255 (317)
Q Consensus 222 f~wa~~~~~a~f~vKvDDDvfVnl~~L~~~L~~~ 255 (317)
+..+....+.+|++-+|+|..+..+.+...+...
T Consensus 69 ~~~~~~~~~~d~v~~~d~D~~~~~~~~~~~~~~~ 102 (156)
T cd00761 69 RNAGLKAARGEYILFLDADDLLLPDWLERLVAEL 102 (156)
T ss_pred HHHHHHHhcCCEEEEECCCCccCccHHHHHHHHH
Confidence 3344444489999999999999998888874443
No 65
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=31.65 E-value=48 Score=24.73 Aligned_cols=17 Identities=24% Similarity=0.450 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHhc
Q 021079 16 IPFVCLFCFALGILFSN 32 (317)
Q Consensus 16 ~~~~~~~~~~~~~~~~~ 32 (317)
++++|++|+.+|.+++-
T Consensus 42 ~~~~c~~S~~lG~~~~~ 58 (60)
T PF06072_consen 42 VVALCVLSGGLGALVAW 58 (60)
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 35889999999988763
No 66
>PF03742 PetN: PetN ; InterPro: IPR005497 PetN is a small hydrophobic protein, crucial for cytochrome b6-f complex assembly and/or stability. It is found in bacteria and plants. Cytochrome b6-f complex is composed of 4 large subunits: cytochrome b6, subunit IV (17 kDa polypeptide, petD), cytochrome f and the Rieske protein, as well as 4 small subunits: petG, petL, petM and petN. The complex functions as a dimer. The cytochrome b6-f complex mediates electron transfer between photosystem II (PSII) and photosystem I (PSI) [].; GO: 0045158 electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity, 0017004 cytochrome complex assembly, 0009512 cytochrome b6f complex; PDB: 2ZT9_H 2D2C_H 2E76_H 1VF5_U 2E75_H 2E74_H.
Probab=29.18 E-value=58 Score=20.84 Aligned_cols=23 Identities=22% Similarity=0.590 Sum_probs=20.1
Q ss_pred ccchhHHHHHHHHHHHHHHHhcC
Q 021079 11 ISTKWIPFVCLFCFALGILFSNL 33 (317)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~ 33 (317)
++--|+.++.+|+|-+.+.|=||
T Consensus 4 v~lgWaal~~~ftfSlalVVWGR 26 (29)
T PF03742_consen 4 VSLGWAALMVVFTFSLALVVWGR 26 (29)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhHHHHHHHHhccceeEEEec
Confidence 45569999999999999999887
No 67
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=27.35 E-value=4.1e+02 Score=22.97 Aligned_cols=43 Identities=19% Similarity=0.291 Sum_probs=30.8
Q ss_pred HHHHhcCCceEEEEecCceEEeHHHHHHHHhhcCCCCceEEEE
Q 021079 223 STAVAKWDADFYVKVDDDVHVNLGMLATTLSRHRSKPRVYIGC 265 (317)
Q Consensus 223 ~wa~~~~~a~f~vKvDDDvfVnl~~L~~~L~~~~~~~~lY~G~ 265 (317)
..+.+....+|++.+|+|..+..+.|...+......+...+|+
T Consensus 77 N~g~~~a~gd~i~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~~ 119 (219)
T cd06913 77 NQAIAQSSGRYLCFLDSDDVMMPQRIRLQYEAALQHPNSIIGC 119 (219)
T ss_pred HHHHHhcCCCEEEEECCCccCChhHHHHHHHHHHhCCCcEEEE
Confidence 3444555789999999999999988877666554434445565
No 68
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=26.66 E-value=2.7e+02 Score=25.82 Aligned_cols=49 Identities=16% Similarity=0.160 Sum_probs=33.8
Q ss_pred CcchHHHHHHHHHHHhc-CCceEEEEecCceEEeHHHHHHHHhhcCCCCc
Q 021079 212 HELSAKTKIFFSTAVAK-WDADFYVKVDDDVHVNLGMLATTLSRHRSKPR 260 (317)
Q Consensus 212 ~nLs~Kt~~~f~wa~~~-~~a~f~vKvDDDvfVnl~~L~~~L~~~~~~~~ 260 (317)
.|.-.|+-..-...... .+.+|++-.|-|+.+.++.|...+......++
T Consensus 76 ~~~g~Kag~l~~~~~~~~~~~~~i~~~DaD~~~~p~~l~~~v~~~~~~~~ 125 (254)
T cd04191 76 ENTGRKAGNIADFCRRWGSRYDYMVVLDADSLMSGDTIVRLVRRMEANPR 125 (254)
T ss_pred CCCCccHHHHHHHHHHhCCCCCEEEEEeCCCCCCHHHHHHHHHHHHhCCC
Confidence 34444554443333332 47899999999999999999999887643343
No 69
>PLN03181 glycosyltransferase; Provisional
Probab=26.61 E-value=3.9e+02 Score=27.56 Aligned_cols=48 Identities=19% Similarity=0.153 Sum_probs=35.4
Q ss_pred HhhCC-CEEEEe-ccc-cCCcchHHHHHHHHHHHhcCCceEEEEecCceEE
Q 021079 196 DAQHK-DFLRLE-HIE-GYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHV 243 (317)
Q Consensus 196 ~~~~~-DIl~ld-~~D-sY~nLs~Kt~~~f~wa~~~~~a~f~vKvDDDvfV 243 (317)
+++|| ++...+ ..+ .+..-..|...+-.-..++|+++|+.-+|-|+++
T Consensus 161 ArrHGY~lf~~~a~Ld~~~p~~WaKipalRaAM~a~PeAEWfWWLDsDALI 211 (453)
T PLN03181 161 CRIHGYDIFYNNALLHPKMNSYWAKLPVVRAAMLAHPEAEWIWWVDSDAVF 211 (453)
T ss_pred HHHhCCcEEEeccccCccCchhhhHHHHHHHHHHHCCCceEEEEecCCcee
Confidence 35666 555443 333 5677788888877777779999999999999877
No 70
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=26.58 E-value=4.6e+02 Score=23.32 Aligned_cols=87 Identities=14% Similarity=0.168 Sum_probs=49.5
Q ss_pred CeEEEEEeecCCCCCchHHHHHHHHHhhCCC--EEEEeccccCCcchHHHHHHHHHHHhcCCceEEEEecCceEEeHHHH
Q 021079 171 GIIIRFMIGHSATSNSILDKAIDSEDAQHKD--FLRLEHIEGYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGML 248 (317)
Q Consensus 171 ~i~v~FVvG~s~~~~~~~~~~I~~E~~~~~D--Il~ld~~DsY~nLs~Kt~~~f~wa~~~~~a~f~vKvDDDvfVnl~~L 248 (317)
.+.+++|-..|. +.. ...+.+-.++|++ +.......+. ... .++..+...-+.+|++.+|+|..++++.|
T Consensus 40 ~~eiivvDdgS~--D~t-~~i~~~~~~~~~~~~v~~~~~~~n~-G~~----~a~n~g~~~a~g~~i~~lD~D~~~~~~~l 111 (243)
T PLN02726 40 DFEIIVVDDGSP--DGT-QDVVKQLQKVYGEDRILLRPRPGKL-GLG----TAYIHGLKHASGDFVVIMDADLSHHPKYL 111 (243)
T ss_pred CeEEEEEeCCCC--CCH-HHHHHHHHHhcCCCcEEEEecCCCC-CHH----HHHHHHHHHcCCCEEEEEcCCCCCCHHHH
Confidence 567777766553 222 2333333344543 3333332221 111 23344444457899999999999999998
Q ss_pred HHHHhhcCC-CCceEEEE
Q 021079 249 ATTLSRHRS-KPRVYIGC 265 (317)
Q Consensus 249 ~~~L~~~~~-~~~lY~G~ 265 (317)
..++..... ...+.+|.
T Consensus 112 ~~l~~~~~~~~~~~v~g~ 129 (243)
T PLN02726 112 PSFIKKQRETGADIVTGT 129 (243)
T ss_pred HHHHHHHHhcCCcEEEEc
Confidence 888876532 34566664
No 71
>PF02485 Branch: Core-2/I-Branching enzyme; InterPro: IPR003406 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This is the glycosyltransferase family 14 GT14 from CAZY, a family of two different beta-1,6-N-acetylglucosaminyltransferase enzymes, I-branching enzyme (2.4.1.150 from EC) and core-2 branching enzyme (2.4.1.102 from EC). I-branching enzyme, an integral membrane protein, converts linear into branched poly-N-acetyllactosaminoglycans in the glycosylation pathway, and is responsible for the production of the blood group I-antigen during embryonic development []. Core-2 branching enzyme, also an integral membrane protein, forms crucial side-chain branches in O-glycans in the glycosylation pathway [].; GO: 0008375 acetylglucosaminyltransferase activity, 0016020 membrane; PDB: 3OTK_D 2GAM_A 2GAK_B.
Probab=26.55 E-value=4.7e+02 Score=23.46 Aligned_cols=122 Identities=14% Similarity=0.105 Sum_probs=59.3
Q ss_pred HHHHHHhhCCCEEEEe----ccccCCcchHHHHHHHHHHHh-cCCceEEEEecCceEE--eHHHHHHHHhhcCCCCceEE
Q 021079 191 AIDSEDAQHKDFLRLE----HIEGYHELSAKTKIFFSTAVA-KWDADFYVKVDDDVHV--NLGMLATTLSRHRSKPRVYI 263 (317)
Q Consensus 191 ~I~~E~~~~~DIl~ld----~~DsY~nLs~Kt~~~f~wa~~-~~~a~f~vKvDDDvfV--nl~~L~~~L~~~~~~~~lY~ 263 (317)
.+..-...+..+.+++ ..=+-.++..=++..++.|.+ ..+.+|++-+..+-|. ....+.++|..+... ..++
T Consensus 44 ~~~~~~~~~~nv~~v~~r~~v~WG~~S~v~A~l~ll~~al~~~~~~~y~~llSg~D~Pl~s~~~i~~~l~~~~~~-~~f~ 122 (244)
T PF02485_consen 44 EIKKLISCFPNVHFVPKRVDVRWGGFSLVEATLNLLREALKRDGDWDYFILLSGQDYPLKSNEEIHEFLESNNGD-NNFI 122 (244)
T ss_dssp HHHHHHCT-TTEEE-SS-----TTSHHHHHHHHHHHHHHHHH-S---EEEEEETTEEESS-HHHHHHHHHHTTT---B--
T ss_pred HHHHhcccCCceeecccccccccCCccHHHHHHHHHHHHHhcCCCCcEEEEcccccccccchHHHHHHHHhcCCC-Ccce
Confidence 3444356677776665 333455677778889999999 6788888887777765 478889999987332 2333
Q ss_pred EEeecCcccccCCCCccccCccccCCCCCCCCcCcccceeeeCHHHHHHHHh
Q 021079 264 GCMKSGPVLSQKNVKYHEPEYWKFGEEGNKYFRHATGQIYAISKDLATYISI 315 (317)
Q Consensus 264 G~~~~gpv~r~~~~Kwyvp~~wkf~y~~~~YP~y~~G~~YviS~dla~~I~~ 315 (317)
........ ... .+|.....+.+.+.-..-..|-+.+-+.||++.|++|..
T Consensus 123 ~~~~~~~~-~~~-~r~~~~~~~~~~~~~~~~~~~~GSqW~~Ltr~~v~~il~ 172 (244)
T PF02485_consen 123 ESFSDEDP-RES-GRYNPRIYDPFRPFFRKRTLYKGSQWFSLTRDFVEYILD 172 (244)
T ss_dssp -BEE--GG-GG--HHHHEEEETTEEEEEEEE--EEE-S--EEEHHHHHHHHH
T ss_pred eccccccc-chh-hcceeeeeeecccccccccccccceeeEeeHHHHHHhhh
Confidence 33221111 001 122111110000000000224556889999999999974
No 72
>PF09964 DUF2198: Uncharacterized protein conserved in bacteria (DUF2198); InterPro: IPR019242 This family of various hypothetical archaeal proteins has no known function.
Probab=24.96 E-value=51 Score=25.61 Aligned_cols=22 Identities=27% Similarity=0.573 Sum_probs=19.5
Q ss_pred chhHHHHHHHHHHHHHHHhcCC
Q 021079 13 TKWIPFVCLFCFALGILFSNLT 34 (317)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~ 34 (317)
.-|++++-++|..||.+++.+|
T Consensus 46 ~~~ii~iD~~Sl~aGf~~a~~m 67 (74)
T PF09964_consen 46 TWWIIFIDAVSLTAGFLYAKKM 67 (74)
T ss_pred chHHHHHHHHHHHHHHHHHHHH
Confidence 3578999999999999999886
No 73
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=23.51 E-value=3.3e+02 Score=20.58 Aligned_cols=71 Identities=13% Similarity=0.206 Sum_probs=39.9
Q ss_pred CCeEEEEEeecCCCCCchHHHHHHHHHhhCCCEEEEeccccCCcchHHHHHHHHHHHh-cCCceEEEEecCceEEeHHH
Q 021079 170 KGIIIRFMIGHSATSNSILDKAIDSEDAQHKDFLRLEHIEGYHELSAKTKIFFSTAVA-KWDADFYVKVDDDVHVNLGM 247 (317)
Q Consensus 170 ~~i~v~FVvG~s~~~~~~~~~~I~~E~~~~~DIl~ld~~DsY~nLs~Kt~~~f~wa~~-~~~a~f~vKvDDDvfVnl~~ 247 (317)
.|+.-++|+-..++ +++ .. +-. .+.++-+..+...+..-... ........+ ..+++|++.+|-|=|+.++.
T Consensus 17 lG~d~i~i~d~~s~-D~t-~~-~l~---~~~~v~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~dWvl~~D~DEfl~~~~ 88 (97)
T PF13704_consen 17 LGVDHIYIYDDGST-DGT-RE-ILR---ALPGVGIIRWVDPYRDERRQ-RAWRNALIERAFDADWVLFLDADEFLVPPP 88 (97)
T ss_pred cCCCEEEEEECCCC-ccH-HH-HHH---hCCCcEEEEeCCCccchHHH-HHHHHHHHHhCCCCCEEEEEeeeEEEecCC
Confidence 45655555544432 222 22 222 24555566666666543333 233333333 35899999999999988765
No 74
>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry.; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....
Probab=20.68 E-value=3.3e+02 Score=24.12 Aligned_cols=92 Identities=15% Similarity=0.131 Sum_probs=51.2
Q ss_pred HHHHHHHHHHhcCC----ceEEEEecCceEEeHHHHHHHHhhcCCCCc---eEEEEeec------CcccccCCCCccccC
Q 021079 217 KTKIFFSTAVAKWD----ADFYVKVDDDVHVNLGMLATTLSRHRSKPR---VYIGCMKS------GPVLSQKNVKYHEPE 283 (317)
Q Consensus 217 Kt~~~f~wa~~~~~----a~f~vKvDDDvfVnl~~L~~~L~~~~~~~~---lY~G~~~~------gpv~r~~~~Kwyvp~ 283 (317)
-|..++..+...-. .+.++-+.+|++.+. .+.++|+.|..... +.++.+.. |.+..+.+. .+-.
T Consensus 85 Gta~al~~a~~~i~~~~~~~~~lv~~gD~i~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~~--~V~~ 161 (248)
T PF00483_consen 85 GTAGALLQALDFIEEEDDDEDFLVLNGDIIFDD-DLQDMLEFHRESNADGTVTLLVVPVEDPSRYGVVEVDEDG--RVIR 161 (248)
T ss_dssp CHHHHHHHTHHHHTTSEE-SEEEEETTEEEEST-THHHHHHHHHHHSSCESEEEEEEESSGGGGSEEEEEETTS--EEEE
T ss_pred chhHHHHHHHHHhhhccccceEEEEeccccccc-hhhhHHHhhhccccccccccccccccccccceeeeeccce--eEEE
Confidence 44555555554222 345777888998887 77777777654332 44444321 223333221 2211
Q ss_pred ccccCC-CCCCC-CcCcccceeeeCHHHHHHHH
Q 021079 284 YWKFGE-EGNKY-FRHATGQIYAISKDLATYIS 314 (317)
Q Consensus 284 ~wkf~y-~~~~Y-P~y~~G~~YviS~dla~~I~ 314 (317)
|.. |.... ..++.++.|+++.++...+.
T Consensus 162 ---~~EKP~~~~~~~~~~~G~Y~~~~~~~~~~~ 191 (248)
T PF00483_consen 162 ---IVEKPDNPNASNLINTGIYIFKPEIFDFLL 191 (248)
T ss_dssp ---EEESCSSHSHSSEEEEEEEEEETHHHHHHH
T ss_pred ---EeccCcccccceeccCceEEEcchHHHHHh
Confidence 111 22222 45788899999999998884
No 75
>PF11772 EpuA: DNA-directed RNA polymerase subunit beta; InterPro: IPR024596 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. This entry represents the short 60-residue long bacterial family that is the beta subunit of the DNA-directed RNA polymerase, likely to be 2.7.7.6 from EC It is membrane-bound and is referred to by the name EpuA.
Probab=20.58 E-value=86 Score=22.19 Aligned_cols=16 Identities=13% Similarity=0.650 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHh
Q 021079 16 IPFVCLFCFALGILFS 31 (317)
Q Consensus 16 ~~~~~~~~~~~~~~~~ 31 (317)
+++|++++|++|+.+-
T Consensus 4 V~lL~~~~l~iGlmIG 19 (47)
T PF11772_consen 4 VLLLAILALAIGLMIG 19 (47)
T ss_pred HHHHHHHHHHHHHHee
Confidence 6789999999998764
No 76
>PF09258 Glyco_transf_64: Glycosyl transferase family 64 domain; InterPro: IPR015338 Members of this entry catalyse the transfer reaction of N-acetylglucosamine and N-acetylgalactosamine from the respective UDP-sugars to the non-reducing end of [glucuronic acid]beta 1-3[galactose]beta 1-O-naphthalenemethanol, an acceptor substrate analogue of the natural common linker of various glycosylaminoglycans. They are also required for the biosynthesis of heparan-sulphate []. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0031227 intrinsic to endoplasmic reticulum membrane; PDB: 1ON6_B 1OMZ_B 1OMX_B 1ON8_B.
Probab=20.12 E-value=1.2e+02 Score=28.41 Aligned_cols=38 Identities=24% Similarity=0.328 Sum_probs=29.1
Q ss_pred CCceEEEEecCceEEeHHHHHHHHhhcCCCCceEEEEe
Q 021079 229 WDADFYVKVDDDVHVNLGMLATTLSRHRSKPRVYIGCM 266 (317)
Q Consensus 229 ~~a~f~vKvDDDvfVnl~~L~~~L~~~~~~~~lY~G~~ 266 (317)
...+-++-+|||+.++.+.|.-.+..-+..+.-.+|..
T Consensus 74 i~T~AVl~~DDDv~~~~~~l~faF~~W~~~pdrlVGf~ 111 (247)
T PF09258_consen 74 IETDAVLSLDDDVMLSCDELEFAFQVWREFPDRLVGFP 111 (247)
T ss_dssp --SSEEEEEETTEEE-HHHHHHHHHHHCCSTTSEEES-
T ss_pred cCcceEEEecCCcccCHHHHHHHHHHHHhChhheeCCc
Confidence 46788999999999999999888887776676778854
Done!