Query 021079
Match_columns 317
No_of_seqs 226 out of 1257
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 12:27:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021079.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021079hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2j0a_A Beta-1,3-N-acetylglucos 99.8 7.8E-20 2.7E-24 171.4 11.7 158 131-315 11-172 (280)
2 1xhb_A Polypeptide N-acetylgal 90.6 5.9 0.0002 37.9 14.9 83 172-261 62-145 (472)
3 2d7i_A Polypeptide N-acetylgal 88.3 9.4 0.00032 38.0 14.8 85 173-264 146-230 (570)
4 1qg8_A Protein (spore coat pol 86.2 15 0.00051 31.3 15.4 130 171-314 30-172 (255)
5 4fix_A UDP-galactofuranosyl tr 82.4 28 0.00096 35.6 15.2 37 220-256 258-294 (657)
6 2ffu_A Ppgalnact-2, polypeptid 82.1 24 0.00081 34.1 14.0 82 172-264 99-180 (501)
7 3bcv_A Putative glycosyltransf 72.5 39 0.0013 28.2 11.1 85 171-264 34-119 (240)
8 2z86_A Chondroitin synthase; G 62.1 65 0.0022 31.7 11.8 76 171-255 404-479 (625)
9 2z86_A Chondroitin synthase; G 50.5 1.9E+02 0.0065 28.3 14.6 35 222-256 166-200 (625)
10 2bo4_A Mannosylglycerate synth 43.7 74 0.0025 30.4 8.4 138 171-314 28-178 (397)
11 2lnd_A De novo designed protei 38.1 72 0.0025 24.4 5.8 71 139-227 31-104 (112)
12 1fo8_A Alpha-1,3-mannosyl-glyc 35.5 57 0.0019 30.7 6.0 44 220-263 89-135 (343)
13 3ckj_A Putative uncharacterize 34.7 13 0.00044 33.9 1.4 44 223-266 124-170 (329)
14 1vf5_H Protein PET N; photosyn 27.0 37 0.0013 20.8 2.0 23 11-33 4-26 (29)
15 1q90_N Cytochrome B6F complex 23.5 37 0.0013 21.1 1.5 23 11-33 6-28 (31)
No 1
>2j0a_A Beta-1,3-N-acetylglucosaminyltransferase manic FR; glycosyltransferase, developmental protein, transmembrane, G apparatus, notch signaling; 1.8A {Mus musculus} PDB: 2j0b_A*
Probab=99.81 E-value=7.8e-20 Score=171.36 Aligned_cols=158 Identities=20% Similarity=0.258 Sum_probs=104.4
Q ss_pred CCeEEEEEEECCCC-CHHHHHHHHHhhccCchhhhhhhcCCCeEEEEEeecCCCCCchHHHHHHHHHhhCCCEEEEecc-
Q 021079 131 PKVFVVIGINTAFS-SRKRRDSVRDTWMPQGEKLIQLEREKGIIIRFMIGHSATSNSILDKAIDSEDAQHKDFLRLEHI- 208 (317)
Q Consensus 131 ~~~~lvI~I~S~~~-~~~rR~aIR~TW~~~~~~l~kL~~~~~i~v~FVvG~s~~~~~~~~~~I~~E~~~~~DIl~ld~~- 208 (317)
..-.|+|+|+|++. +..|+.+||+||++.... . .||.+..+ +..+. .. ..++++..++.
T Consensus 11 ~~~~I~~~V~T~~~~~~~R~~~I~~TW~~~~~~-------~----~fifsd~~--d~~l~----~~--~~~~~~~~~~~~ 71 (280)
T 2j0a_A 11 QLGDIFIAVKTTWAFHRSRLDLLLDTWVSRIRQ-------Q----TFIFTDSP--DERLQ----ER--LGPHLVVTQCSA 71 (280)
T ss_dssp CGGGEEEEEECCGGGTTTTHHHHHHTGGGGSGG-------G----EEEEESSC--CHHHH----HH--HGGGEEECCC--
T ss_pred CcccEEEEEECcHHHHHHHHHHHHHHHhccCCC-------c----eEEEcCCC--ccccc----cc--ccccceeccccc
Confidence 34578899999998 557889999999987531 1 34444332 23332 22 34578877764
Q ss_pred -ccCCcchHHHHHHHHHHHhcCCceEEEEecCceEEeHHHHHHHHhhcCCCCceEEEEeecCcccccCCCCccccCcccc
Q 021079 209 -EGYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGMLATTLSRHRSKPRVYIGCMKSGPVLSQKNVKYHEPEYWKF 287 (317)
Q Consensus 209 -DsY~nLs~Kt~~~f~wa~~~~~a~f~vKvDDDvfVnl~~L~~~L~~~~~~~~lY~G~~~~gpv~r~~~~Kwyvp~~wkf 287 (317)
+++.+++.|+...+.+.. +.+++||+|+|||+|||+++|..+|..+++.+++|+|......+++. ++++|.+
T Consensus 72 ~~~~~~l~~K~~~~~~~~l-~~~~~Wf~~~DDDtyv~~~nL~~~L~~~d~~~~~YiG~~~~~~~~~~---~~~~~~~--- 144 (280)
T 2j0a_A 72 EHSHPALSCKMAAEFDAFL-VSGLRWFCHVDDDNYVNPKALLQLLKTFPQDRDVYVGKPSLNRPIHA---SELQSKQ--- 144 (280)
T ss_dssp -----CCCHHHHHHHHHHH-HHTCSEEEEEETTEEECHHHHHHHHTTSCTTSCCEEECEEC-------------------
T ss_pred cccccchHHHHHHHHHHHh-CCCCcEEEEeCCCcEEcHHHHHHHHHhCCCCCCEEEEEeccCccccc---cccCccc---
Confidence 467889999999998754 36999999999999999999999999999999999998654433332 4555543
Q ss_pred CCCCCCCCcCcc-cceeeeCHHHHHHHHh
Q 021079 288 GEEGNKYFRHAT-GQIYAISKDLATYISI 315 (317)
Q Consensus 288 ~y~~~~YP~y~~-G~~YviS~dla~~I~~ 315 (317)
.++...| +||+ |+||+||+++++.|+.
T Consensus 145 ~~~~~~~-~y~~GGaG~vlSr~~l~~l~~ 172 (280)
T 2j0a_A 145 RTKLVRF-WFATGGAGFCINRQLALKMVP 172 (280)
T ss_dssp ------C-CEECGGGCEEEEHHHHHHHHH
T ss_pred ccccccc-CcccCCCEEEECHHHHHHHHH
Confidence 1122234 4765 6899999999999985
No 2
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17
Probab=90.59 E-value=5.9 Score=37.94 Aligned_cols=83 Identities=14% Similarity=0.062 Sum_probs=49.4
Q ss_pred eEEEEEeecCCCCCchHHHHHHHHHhhCC-CEEEEeccccCCcchHHHHHHHHHHHhcCCceEEEEecCceEEeHHHHHH
Q 021079 172 IIIRFMIGHSATSNSILDKAIDSEDAQHK-DFLRLEHIEGYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGMLAT 250 (317)
Q Consensus 172 i~v~FVvG~s~~~~~~~~~~I~~E~~~~~-DIl~ld~~DsY~nLs~Kt~~~f~wa~~~~~a~f~vKvDDDvfVnl~~L~~ 250 (317)
..++.|-..|. ++.....+++-.+.+. .+.++...++.. .-.+...+.+....+|++..|+|+.+..+.|..
T Consensus 62 ~EIIvVDd~S~--d~~t~~~l~~~~~~~~~~v~vi~~~~n~G-----~~~a~N~g~~~A~gd~i~flD~D~~~~p~~L~~ 134 (472)
T 1xhb_A 62 EEIVLVDDASE--RDFLKRPLESYVKKLKVPVHVIRMEQRSG-----LIRARLKGAAVSRGQVITFLDAHCECTAGWLEP 134 (472)
T ss_dssp EEEEEEECSCC--CGGGTHHHHHHHHSSSSCEEEEECSSCCC-----HHHHHHHHHHHCCSSEEEEEESSEEECTTCHHH
T ss_pred eEEEEEECCCC--cHHHHHHHHHHHHHCCCcEEEEECCCCCC-----hHHHHHHHHHhccCCeEEEECCCeEeCccHHHH
Confidence 35555554443 3334444555455666 465555544332 122334444545789999999999999888888
Q ss_pred HHhhcCCCCce
Q 021079 251 TLSRHRSKPRV 261 (317)
Q Consensus 251 ~L~~~~~~~~l 261 (317)
++......+..
T Consensus 135 ll~~~~~~~~~ 145 (472)
T 1xhb_A 135 LLARIKHDRRT 145 (472)
T ss_dssp HHHHHHHCTTE
T ss_pred HHHHHHhCCCE
Confidence 77766433333
No 3
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A*
Probab=88.29 E-value=9.4 Score=38.03 Aligned_cols=85 Identities=15% Similarity=0.076 Sum_probs=50.2
Q ss_pred EEEEEeecCCCCCchHHHHHHHHHhhCCCEEEEeccccCCcchHHHHHHHHHHHhcCCceEEEEecCceEEeHHHHHHHH
Q 021079 173 IIRFMIGHSATSNSILDKAIDSEDAQHKDFLRLEHIEGYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGMLATTL 252 (317)
Q Consensus 173 ~v~FVvG~s~~~~~~~~~~I~~E~~~~~DIl~ld~~DsY~nLs~Kt~~~f~wa~~~~~a~f~vKvDDDvfVnl~~L~~~L 252 (317)
.++.|-..|. ++.+...+++-.+.+..|.++...++. .+.. +...+.+....+|++.+|+|+.++.+-|..++
T Consensus 146 EIIVVDDgS~--D~tl~~~l~~~~~~~~~v~vi~~~~n~-G~~~----A~N~G~~~A~gd~i~fLD~D~~~~p~~L~~ll 218 (570)
T 2d7i_A 146 EIVLVDDFSD--REHLKKPLEDYMALFPSVRILRTKKRE-GLIR----TRMLGASVATGDVITFLDSHCEANVNWLPPLL 218 (570)
T ss_dssp EEEEEECSCC--CGGGTHHHHHHHTTSTTEEEEECSSCC-CHHH----HHHHHHHHCCSSEEEECCSSEEECTTCSHHHH
T ss_pred EEEEEECCCC--cHHHHHHHHHHHHhCCeEEEEECCCCC-CHHH----HHHHHHHhcCCCEEEEEcCCccccccHHHHHH
Confidence 5555554443 344344555555666666665544332 2222 23333444478999999999999988777777
Q ss_pred hhcCCCCceEEE
Q 021079 253 SRHRSKPRVYIG 264 (317)
Q Consensus 253 ~~~~~~~~lY~G 264 (317)
......+.+.+|
T Consensus 219 ~~l~~~~~~vv~ 230 (570)
T 2d7i_A 219 DRIARNRKTIVC 230 (570)
T ss_dssp HHHHHCTTEEEE
T ss_pred HHHHhCCCEEEe
Confidence 665444444444
No 4
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=86.24 E-value=15 Score=31.32 Aligned_cols=130 Identities=7% Similarity=-0.062 Sum_probs=70.4
Q ss_pred CeEEEEEeecCCCCCchHHHHHHHHHhhCCCEEEEeccccC-----CcchHHHHHHHHHHHhcCCceEEEEecCceEEeH
Q 021079 171 GIIIRFMIGHSATSNSILDKAIDSEDAQHKDFLRLEHIEGY-----HELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNL 245 (317)
Q Consensus 171 ~i~v~FVvG~s~~~~~~~~~~I~~E~~~~~DIl~ld~~DsY-----~nLs~Kt~~~f~wa~~~~~a~f~vKvDDDvfVnl 245 (317)
.+.++.|-..|. +... .+-++......|..+.....- .|.. .-..+..+.+..+.+|++.+|||.++..
T Consensus 30 ~~eiivvDd~S~---d~t~-~~~~~~~~~~~i~~i~~~~~~~~~~~~n~G--~~~a~N~gi~~a~g~~i~~lD~Dd~~~~ 103 (255)
T 1qg8_A 30 DFELFIMDDNSN---EETL-NVIRPFLNDNRVRFYQSDISGVKERTEKTR--YAALINQAIEMAEGEYITYATDDNIYMP 103 (255)
T ss_dssp CEEEEEEECSCC---HHHH-HHHGGGGGSTTEEEEECCCCSHHHHHSSCH--HHHHHHHHHHHCCCSEEEEEETTEEECT
T ss_pred ceEEEEEECCCC---chHH-HHHHHHhhcCCEEEEecccccccccccccC--HHHHHHHHHHHcCCCEEEEeCCCCccCh
Confidence 456666655442 2332 233444345566555443110 2322 2334556666568899999999999998
Q ss_pred HHHHHHHhhcCC--CCceEEEEee----c--CcccccCCCCccccCccccCCCCCCCCcCcccceeeeCHHHHHHHH
Q 021079 246 GMLATTLSRHRS--KPRVYIGCMK----S--GPVLSQKNVKYHEPEYWKFGEEGNKYFRHATGQIYAISKDLATYIS 314 (317)
Q Consensus 246 ~~L~~~L~~~~~--~~~lY~G~~~----~--gpv~r~~~~Kwyvp~~wkf~y~~~~YP~y~~G~~YviS~dla~~I~ 314 (317)
+.|...+..... .-.+..|.+. . +.++ ..+..|.. .+. .....++.|++.++.++++..+.
T Consensus 104 ~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~----~~~~~~~~-~~~---~~~~~~~~~~~~~~rr~~~~~~g 172 (255)
T 1qg8_A 104 DRLLKMVRELDTHPEKAVIYSASKTYHLNENRDIV----KETVRPAA-QVT---WNAPCAIDHCSVMHRYSVLEKVK 172 (255)
T ss_dssp THHHHHHHHHHHCTTCCEEEEEEEEEEEC---CEE----EEEEECCC-SCB---SCCTTTSCGGGEEEETHHHHHHH
T ss_pred HHHHHHHHHHHhCCCceEEEeceEEEEeCCCCcch----hhccCchH-HHH---HhhcCCCccceEEEEHHHHHhhc
Confidence 888777766542 3344444432 1 1111 11112221 111 12344577899999999988764
No 5
>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family, glycosyltrans carbohydrate binding, membrane; 2.45A {Mycobacterium tuberculosis} PDB: 4fiy_A*
Probab=82.36 E-value=28 Score=35.58 Aligned_cols=37 Identities=22% Similarity=0.305 Sum_probs=29.2
Q ss_pred HHHHHHHhcCCceEEEEecCceEEeHHHHHHHHhhcC
Q 021079 220 IFFSTAVAKWDADFYVKVDDDVHVNLGMLATTLSRHR 256 (317)
Q Consensus 220 ~~f~wa~~~~~a~f~vKvDDDvfVnl~~L~~~L~~~~ 256 (317)
.+++.|....+++|++.+|||+.+..+.|..++....
T Consensus 258 ~Gl~~A~g~~~~dyIlfLD~D~~~~pd~L~~ll~~l~ 294 (657)
T 4fix_A 258 RVMYEALKNTDCQQILFMDDDIRLEPDSILRVLAMHR 294 (657)
T ss_dssp HHHHHHHHHCCCSEEEEECSSEEECTHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCEEEEECCCCccChhHHHHHHHHHH
Confidence 3566666545889999999999999888888776653
No 6
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Probab=82.07 E-value=24 Score=34.10 Aligned_cols=82 Identities=11% Similarity=-0.066 Sum_probs=48.0
Q ss_pred eEEEEEeecCCCCCchHHHHHHHHHhhCCCEEEEeccccCCcchHHHHHHHHHHHhcCCceEEEEecCceEEeHHHHHHH
Q 021079 172 IIIRFMIGHSATSNSILDKAIDSEDAQHKDFLRLEHIEGYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGMLATT 251 (317)
Q Consensus 172 i~v~FVvG~s~~~~~~~~~~I~~E~~~~~DIl~ld~~DsY~nLs~Kt~~~f~wa~~~~~a~f~vKvDDDvfVnl~~L~~~ 251 (317)
..+++|-..|. ++.+. ...+.+..+.++...++. - .-.+...+...-..+|++.+|+|..+.++.|..+
T Consensus 99 ~EIIvVDDgS~--D~t~~----~~~~~~~~v~vi~~~~n~---G--~~~A~N~G~~~A~gd~i~flD~D~~~~p~~L~~l 167 (501)
T 2ffu_A 99 KEIILVDDYSN--DPEDG----ALLGKIEKVRVLRNDRRE---G--LMRSRVRGADAAQAKVLTFLDSHCECNEHWLEPL 167 (501)
T ss_dssp EEEEEEECSCS--CTHHH----HGGGGBTTEEEEECSSCC---H--HHHHHHHHHHHCCSSEEEECCSSEEECTTCHHHH
T ss_pred eeEEEEECCCC--chHHH----HHHhcCCCEEEEECCCCc---C--HHHHHHHHHHhcCCCEEEEECCCcccCccHHHHH
Confidence 45666655443 33332 223445666655544332 2 1233444555457899999999999998888887
Q ss_pred HhhcCCCCceEEE
Q 021079 252 LSRHRSKPRVYIG 264 (317)
Q Consensus 252 L~~~~~~~~lY~G 264 (317)
+......+...++
T Consensus 168 l~~~~~~~~~vv~ 180 (501)
T 2ffu_A 168 LERVAEDRTRVVS 180 (501)
T ss_dssp HHHHHHCTTEEEE
T ss_pred HHHHHhCCCeEEE
Confidence 7766443333333
No 7
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}
Probab=72.45 E-value=39 Score=28.20 Aligned_cols=85 Identities=14% Similarity=0.097 Sum_probs=50.1
Q ss_pred CeEEEEEeecCCCCCchHHHHHHHHHhhCCCEEEEeccccCCcchHHHHHHHHHHHhcCCceEEEEecCceEEeHHHHHH
Q 021079 171 GIIIRFMIGHSATSNSILDKAIDSEDAQHKDFLRLEHIEGYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGMLAT 250 (317)
Q Consensus 171 ~i~v~FVvG~s~~~~~~~~~~I~~E~~~~~DIl~ld~~DsY~nLs~Kt~~~f~wa~~~~~a~f~vKvDDDvfVnl~~L~~ 250 (317)
.+.++.|-..|. +. ....+++-..++..|..+. .+ |.. .-.+...+.+....+|++.+|+|.++..+.|..
T Consensus 34 ~~eiIvvDd~S~--d~-t~~~~~~~~~~~~~i~~i~-~~---n~G--~~~a~N~g~~~a~g~~i~~lD~Dd~~~~~~l~~ 104 (240)
T 3bcv_A 34 DIEIILIDDESP--DN-CPKICDDYAAQYPNIKVIH-KK---NAG--LGMACNSGLDVATGEYVAFCDSDDYVDSDMYMT 104 (240)
T ss_dssp SEEEEEEECCCS--SS-HHHHHHHHHHHCSSEEEEE-CC---CCC--HHHHHHHHHHHCCSSEEEECCTTCCCCTTHHHH
T ss_pred CeEEEEEECCCC--cC-HHHHHHHHHhhCCCEEEEE-CC---CCC--hHHHHHHHHHHcCCCEEEEECCCCcCCHHHHHH
Confidence 456666655443 23 2334444445566666664 22 222 123344555555789999999999999888877
Q ss_pred HHhhcCC-CCceEEE
Q 021079 251 TLSRHRS-KPRVYIG 264 (317)
Q Consensus 251 ~L~~~~~-~~~lY~G 264 (317)
++..... ...+.+|
T Consensus 105 l~~~~~~~~~~~v~~ 119 (240)
T 3bcv_A 105 MYNVAQKYTCDAVFT 119 (240)
T ss_dssp HHHHHHHHTCSEEEC
T ss_pred HHHHHHhcCCCEEEE
Confidence 7766543 3344444
No 8
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=62.13 E-value=65 Score=31.70 Aligned_cols=76 Identities=12% Similarity=0.061 Sum_probs=45.7
Q ss_pred CeEEEEEeecCCCCCchHHHHHHHHHhhCCCEEEEeccccCCcchHHHHHHHHHHHhcCCceEEEEecCceEEeHHHHHH
Q 021079 171 GIIIRFMIGHSATSNSILDKAIDSEDAQHKDFLRLEHIEGYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGMLAT 250 (317)
Q Consensus 171 ~i~v~FVvG~s~~~~~~~~~~I~~E~~~~~DIl~ld~~DsY~nLs~Kt~~~f~wa~~~~~a~f~vKvDDDvfVnl~~L~~ 250 (317)
.+.++.|-..|. ++. ...+.+-...+..+..+. .+ |.. .-.++..+......+|++..|+|.++..+.|..
T Consensus 404 ~~eiivvdd~S~--d~t-~~~~~~~~~~~~~i~~~~-~~---n~G--~~~a~n~g~~~a~g~~i~~ld~D~~~~~~~l~~ 474 (625)
T 2z86_A 404 DLEVCICDDGST--DDT-LRILQEHYANHPRVRFIS-QK---NKG--IGSASNTAVRLCRGFYIGQLDSDDFLEPDAVEL 474 (625)
T ss_dssp SEEEEEEEESCS--SSH-HHHHHHHHTTCTTEEEEE-EC---CCC--HHHHHHHHHHHCCSSEEEECCTTCEECTTHHHH
T ss_pred CeEEEEEECcCC--hhH-HHHHHHHHhhCCcEEEEe-CC---CCC--HHHHHHHHHHhcCCCEEEEECCCcccChhHHHH
Confidence 456666665553 333 333444344555666554 22 221 122344555555789999999999999988887
Q ss_pred HHhhc
Q 021079 251 TLSRH 255 (317)
Q Consensus 251 ~L~~~ 255 (317)
.+...
T Consensus 475 ~~~~~ 479 (625)
T 2z86_A 475 CLDEF 479 (625)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77654
No 9
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=50.52 E-value=1.9e+02 Score=28.28 Aligned_cols=35 Identities=9% Similarity=-0.005 Sum_probs=27.4
Q ss_pred HHHHHhcCCceEEEEecCceEEeHHHHHHHHhhcC
Q 021079 222 FSTAVAKWDADFYVKVDDDVHVNLGMLATTLSRHR 256 (317)
Q Consensus 222 f~wa~~~~~a~f~vKvDDDvfVnl~~L~~~L~~~~ 256 (317)
...+....+.+|++.+|+|..+..+.|..++....
T Consensus 166 ~N~g~~~a~g~~v~~lD~D~~~~~~~l~~~~~~~~ 200 (625)
T 2z86_A 166 RNLGLRAAKYNYVAILDCDMAPNPLWVQSYMELLA 200 (625)
T ss_dssp HHHHHHHCCSSEEEEECTTEEECTTHHHHHHHHHH
T ss_pred HHHHHHhCCcCEEEEECCCCCCCHHHHHHHHHHHh
Confidence 34455555889999999999999888887777664
No 10
>2bo4_A Mannosylglycerate synthase; catalysis, glycosyltransferase, mannose, transferase, stereoselectivity; HET: FLC; 1.95A {Rhodothermus marinus} SCOP: c.68.1.18 PDB: 2bo6_A 2bo7_A* 2bo8_A* 2xw2_A 2y4j_A 2xw3_A* 2xw4_A* 2xw5_A* 2y4k_A* 2y4l_A* 2y4m_A*
Probab=43.67 E-value=74 Score=30.41 Aligned_cols=138 Identities=6% Similarity=-0.059 Sum_probs=74.2
Q ss_pred CeEEEEEeecCCCCCchH--HHHHHHHHh-hCCC-EEEEeccc-c--CCcchHHHHHHHHHHHhcCCceEEEEecCce-E
Q 021079 171 GIIIRFMIGHSATSNSIL--DKAIDSEDA-QHKD-FLRLEHIE-G--YHELSAKTKIFFSTAVAKWDADFYVKVDDDV-H 242 (317)
Q Consensus 171 ~i~v~FVvG~s~~~~~~~--~~~I~~E~~-~~~D-Il~ld~~D-s--Y~nLs~Kt~~~f~wa~~~~~a~f~vKvDDDv-f 242 (317)
...+++|=+.|. |.+. -+.+..+.. .++. ++...+.. + -.....=...+|+||....+.++++.+|-|. .
T Consensus 28 ~~EIIVVDDGSt--D~T~eia~~la~~~~~~~g~~vi~~~~~r~~~~n~GkG~Al~~G~~~Al~~a~gd~vv~mDADlq~ 105 (397)
T 2bo4_A 28 RVHEVLCIGYER--DQTYEAVERAAPEISRATGTPVSVRLQERLGTLRPGKGDGMNTALRYFLEETQWERIHFYDADITS 105 (397)
T ss_dssp TCCEEEEEESSC--CHHHHHHHHHHHHHHHHHSCCEEEEECCCCSSSSSSHHHHHHHHHHHHHHHCCCSEEEECCTTCSS
T ss_pred CeEEEEEECcCC--ccHHHHHHHhhhhcccccCCeEEEEecccCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEcCCCCC
Confidence 356788888775 3332 222333433 3454 33333220 1 2345666778898987435789999999999 4
Q ss_pred EeHHHHHHHHhhcCCCCceEEEEeec---CcccccCCCCccccCccccCCC--CCCCCcCcccceeeeCHHHHHHHH
Q 021079 243 VNLGMLATTLSRHRSKPRVYIGCMKS---GPVLSQKNVKYHEPEYWKFGEE--GNKYFRHATGQIYAISKDLATYIS 314 (317)
Q Consensus 243 Vnl~~L~~~L~~~~~~~~lY~G~~~~---gpv~r~~~~Kwyvp~~wkf~y~--~~~YP~y~~G~~YviS~dla~~I~ 314 (317)
.++..+..++......-++.+|.... +..+.....++.... .|+ .....+...++.+++++++++.+.
T Consensus 106 ~~P~~i~~Ll~~l~~g~D~V~g~~~r~~~~~~~~~~~~~~ll~~----~~~~~~~~~i~dp~sG~~a~~R~vl~~l~ 178 (397)
T 2bo4_A 106 FGPDWITKAEEAADFGYGLVRHYFPRASTDAMITWMITRTGFAL----LWPHTELSWIEQPLGGELLMRREVAAMLY 178 (397)
T ss_dssp CCHHHHHHHHHHHHTTCSEEEEECCCCTTSCHHHHHTHHHHHHH----HCTTSSGGGCSCTTCCCEEEEHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCEEEEEeccccCCcHHHHHHHHHHHHH----HHHHhhccccccCCcccEEEeHHHHHHHh
Confidence 78887777776654334566775321 111100000110000 011 001222335678899999998873
No 11
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=38.08 E-value=72 Score=24.35 Aligned_cols=71 Identities=25% Similarity=0.320 Sum_probs=44.5
Q ss_pred EECCCCCHHHHHHHHHhhccCchhhhhhhcCCCeEEEEEeecCCCCCchHHHHHHHHHhhCC---CEEEEeccccCCcch
Q 021079 139 INTAFSSRKRRDSVRDTWMPQGEKLIQLEREKGIIIRFMIGHSATSNSILDKAIDSEDAQHK---DFLRLEHIEGYHELS 215 (317)
Q Consensus 139 I~S~~~~~~rR~aIR~TW~~~~~~l~kL~~~~~i~v~FVvG~s~~~~~~~~~~I~~E~~~~~---DIl~ld~~DsY~nLs 215 (317)
|.|+.++.+-|+.|..-=- +..-.++||-|.+.+.- .+.+.|+++.| |++- .-..++|+
T Consensus 31 irtatssqdirdiiksmkd-----------ngkplvvfvngasqndv----nefqneakkegvsydvlk---stdpeelt 92 (112)
T 2lnd_A 31 IRTATSSQDIRDIIKSMKD-----------NGKPLVVFVNGASQNDV----NEFQNEAKKEGVSYDVLK---STDPEELT 92 (112)
T ss_dssp EEEECSHHHHHHHHHHHTT-----------CCSCEEEEECSCCHHHH----HHHHHHHHHHTCEEEEEE---CCCHHHHH
T ss_pred eeeccchhhHHHHHHHHHh-----------cCCeEEEEecCcccccH----HHHHHHHHhcCcchhhhc---cCCHHHHH
Confidence 4567777888888764322 12236789999886422 34555666555 3332 12245799
Q ss_pred HHHHHHHHHHHh
Q 021079 216 AKTKIFFSTAVA 227 (317)
Q Consensus 216 ~Kt~~~f~wa~~ 227 (317)
..+..+++.|-.
T Consensus 93 qrvreflktags 104 (112)
T 2lnd_A 93 QRVREFLKTAGS 104 (112)
T ss_dssp HHHHHHHHHTTS
T ss_pred HHHHHHHHhccc
Confidence 999999998765
No 12
>1fo8_A Alpha-1,3-mannosyl-glycoprotein beta-1,2-N- acetylglucosaminyltransferase; methylmercury derivative, N- acetylglucosaminyltransferase I; 1.40A {Oryctolagus cuniculus} SCOP: c.68.1.10 PDB: 1fo9_A 1foa_A* 2apc_A* 2am3_A* 2am4_A* 2am5_A*
Probab=35.52 E-value=57 Score=30.68 Aligned_cols=44 Identities=16% Similarity=0.271 Sum_probs=29.2
Q ss_pred HHHHHHHhcCCceEEEEecCceEEeHHHH---HHHHhhcCCCCceEE
Q 021079 220 IFFSTAVAKWDADFYVKVDDDVHVNLGML---ATTLSRHRSKPRVYI 263 (317)
Q Consensus 220 ~~f~wa~~~~~a~f~vKvDDDvfVnl~~L---~~~L~~~~~~~~lY~ 263 (317)
.++.++.+..++++++.+|||+.+.++=+ .+.|..+...+++++
T Consensus 89 ~al~~vf~~~~~~~vIiLEDDl~~spdF~~y~~~~l~~y~~D~~I~~ 135 (343)
T 1fo8_A 89 WALGQIFHNFNYPAAVVVEDDLEVAPDFFEYFQATYPLLKADPSLWC 135 (343)
T ss_dssp HHHHHHHTTSCCSEEEEEETTEEECTTHHHHHHHHHHHHHHCTTEEE
T ss_pred HHHHHHHHhccCCEEEEEcCCCeECHHHHHHHHHHHHHhhcCCcEEE
Confidence 34445444447999999999999998655 344443344567763
No 13
>3ckj_A Putative uncharacterized protein; mycobacteria, unknown function; HET: CIT; 1.80A {Mycobacterium paratuberculosis} PDB: 3ckn_A* 3cko_A* 3ckq_A* 3ckv_A* 3e26_A 3e25_A
Probab=34.67 E-value=13 Score=33.95 Aligned_cols=44 Identities=14% Similarity=0.016 Sum_probs=30.7
Q ss_pred HHHHhcCCceEEEEecCceE-EeHHHHHHHHhhcC--CCCceEEEEe
Q 021079 223 STAVAKWDADFYVKVDDDVH-VNLGMLATTLSRHR--SKPRVYIGCM 266 (317)
Q Consensus 223 ~wa~~~~~a~f~vKvDDDvf-Vnl~~L~~~L~~~~--~~~~lY~G~~ 266 (317)
..+....+.+|++.+|+|.. +.++.|..++.... +.-.+..|..
T Consensus 124 n~g~~~a~gd~i~~lD~D~~~~~p~~l~~l~~~l~~~~~~~~v~g~~ 170 (329)
T 3ckj_A 124 WRSLAASRGDIVVFVDSDLINPHPMFVPWLVGPLLTGDGVHLVKSFY 170 (329)
T ss_dssp HHHHHHCCCSEEEECCTTEESCCTTHHHHHHHHHHSCSSCCEEEEEE
T ss_pred HHHHHhCCCCEEEEECCCCCCcChHHHHHHHHHHHhCCCccEEEEEe
Confidence 34444457899999999999 88888777776632 3335666654
No 14
>1vf5_H Protein PET N; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.27.1 PDB: 2d2c_H* 2e74_H* 2e75_H* 2e76_H* 2zt9_H*
Probab=26.97 E-value=37 Score=20.82 Aligned_cols=23 Identities=9% Similarity=0.433 Sum_probs=19.9
Q ss_pred ccchhHHHHHHHHHHHHHHHhcC
Q 021079 11 ISTKWIPFVCLFCFALGILFSNL 33 (317)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~ 33 (317)
++--|+.++.+|+|-+.+.|=||
T Consensus 4 vsl~WaalmvvftfSlslVVWGR 26 (29)
T 1vf5_H 4 DVLGWVALLVVFTWSIAMVVWGR 26 (29)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhheeeeEEEEec
Confidence 45679999999999999988776
No 15
>1q90_N Cytochrome B6F complex subunit PETN; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.27.1
Probab=23.55 E-value=37 Score=21.11 Aligned_cols=23 Identities=17% Similarity=0.509 Sum_probs=20.0
Q ss_pred ccchhHHHHHHHHHHHHHHHhcC
Q 021079 11 ISTKWIPFVCLFCFALGILFSNL 33 (317)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~ 33 (317)
++--|+.++.+|+|-+.+.|=||
T Consensus 6 vsl~WaalmvvfTfSlslVVWGR 28 (31)
T 1q90_N 6 VQIGWAATCVMFSFSLSLVVWGR 28 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeHHHHHHHHHhheeeEEEEEec
Confidence 45679999999999999998887
Done!