BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021080
(317 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VPJ|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl12
Length = 301
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 75/178 (42%), Gaps = 30/178 (16%)
Query: 46 KARQEVGSSENLLCVCAF----DPENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVSTA 101
+ R +G++E LL V F P ++ + YDP W LP + K R++A VS
Sbjct: 6 RTRARLGANEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVAS---VSLH 62
Query: 102 GKLFVLGGGS-----DAVDPL--TGDQDGSF-------------ATNEVWSYDPVTRGFT 141
+++V+GG +V+ L T D+DG + + V+ GF
Sbjct: 63 DRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFD 122
Query: 142 SCRKSISQAEMYDPEKDVWVPIPDLHRTHNSACTGVVIGGKVHVLHKGLSTVQVLDHM 199
R+ S E YDP D W + D+ A G+V+ V G + +L+ +
Sbjct: 123 GSRRHTSM-ERYDPNIDQWSMLGDMQTAREGA--GLVVASGVIYCLGGYDGLNILNSV 177
>pdb|3MZK|B Chain B, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|C Chain C, Sec13SEC16 COMPLEX, S.CEREVISIAE
Length = 441
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 16/68 (23%)
Query: 92 LAHFGVVSTAGKLFVLGGGSDAVDPLTGDQD------GSFATNE----------VWSYDP 135
L G+ + A LF++G + +P+ D D G+ T E ++SYDP
Sbjct: 288 LTKKGLTAAASTLFIIGNVPLSNEPVMADSDVIFESIGNMNTFESILWDEIYEYIFSYDP 347
Query: 136 VTRGFTSC 143
+GF+S
Sbjct: 348 KFKGFSSI 355
>pdb|2EID|A Chain A, Galactose Oxidase W290g Mutant
Length = 639
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/81 (22%), Positives = 32/81 (39%), Gaps = 1/81 (1%)
Query: 149 QAEMYDPEKDVWVPIPDLHRTHNSACTGVVIGGKVHVLHKGLSTVQVLDHMGLGWTVEDY 208
+ +YD D W+P PD+ + + G+V + G + V + G ++
Sbjct: 249 KTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTI-GGSGSGGVFEKNGEVYSPSSK 307
Query: 209 GWLQGPMAIVHDSVYLMSHGL 229
W P A V+ + GL
Sbjct: 308 TWTSLPNAKVNPMLTADKQGL 328
>pdb|1ZGK|A Chain A, 1.35 Angstrom Structure Of The Kelch Domain Of Keap1
Length = 308
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 144 RKSISQAEMYDPEKDVWVPIPDLHRTHNSACTGVVIGGKVHVL 186
R+S+S E Y+P W+ + DL + S G V+GG ++ +
Sbjct: 35 RQSLSYLEAYNPSNGTWLRLADL-QVPRSGLAGCVVGGLLYAV 76
>pdb|2EIC|A Chain A, Crystal Structure Of Galactose Oxidase Mutant W290f
Length = 639
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/81 (22%), Positives = 31/81 (38%), Gaps = 1/81 (1%)
Query: 149 QAEMYDPEKDVWVPIPDLHRTHNSACTGVVIGGKVHVLHKGLSTVQVLDHMGLGWTVEDY 208
+ +YD D W+P PD+ + + G+V + S V + G ++
Sbjct: 249 KTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSFSG-GVFEKNGEVYSPSSK 307
Query: 209 GWLQGPMAIVHDSVYLMSHGL 229
W P A V+ + GL
Sbjct: 308 TWTSLPNAKVNPMLTADKQGL 328
>pdb|2WQ8|A Chain A, Glycan Labelling Using Engineered Variants Of Galactose
Oxidase Obtained By Directed Evolution
Length = 661
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/81 (22%), Positives = 31/81 (38%), Gaps = 1/81 (1%)
Query: 149 QAEMYDPEKDVWVPIPDLHRTHNSACTGVVIGGKVHVLHKGLSTVQVLDHMGLGWTVEDY 208
+ +YD D W+P PD+ + + G+V + S V + G ++
Sbjct: 271 KTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSFSG-GVFEKNGEVYSPSSK 329
Query: 209 GWLQGPMAIVHDSVYLMSHGL 229
W P A V+ + GL
Sbjct: 330 TWTSLPNAKVNPMLTADKQGL 350
>pdb|2EIB|A Chain A, Crystal Structure Of Galactose Oxidase, W290h Mutant
Length = 639
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/81 (22%), Positives = 32/81 (39%), Gaps = 1/81 (1%)
Query: 149 QAEMYDPEKDVWVPIPDLHRTHNSACTGVVIGGKVHVLHKGLSTVQVLDHMGLGWTVEDY 208
+ +YD D W+P PD+ + + G+V + G + V + G ++
Sbjct: 249 KTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTI-GGSHSGGVFEKNGEVYSPSSK 307
Query: 209 GWLQGPMAIVHDSVYLMSHGL 229
W P A V+ + GL
Sbjct: 308 TWTSLPNAKVNPMLTADKQGL 328
>pdb|3VNG|A Chain A, Crystal Structure Of Keap1 In Complex With Synthetic Small
Molecular Based On A Co-crystallization
pdb|3VNH|A Chain A, Crystal Structure Of Keap1 Soaked With Synthetic Small
Molecular
Length = 309
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 144 RKSISQAEMYDPEKDVWVPIPDLHRTHNSACTGVVIGGKVHVL 186
R+S+S E Y+P W+ + DL + S G V+GG ++ +
Sbjct: 36 RQSLSYLEAYNPSDGTWLRLADL-QVPRSGLAGCVVGGLLYAV 77
>pdb|1U6D|X Chain X, Crystal Structure Of The Kelch Domain Of Human Keap1
pdb|2FLU|X Chain X, Crystal Structure Of The Kelch-Neh2 Complex
Length = 308
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 144 RKSISQAEMYDPEKDVWVPIPDLHRTHNSACTGVVIGGKVHVL 186
R+S+S E Y+P W+ + DL + S G V+GG ++ +
Sbjct: 35 RQSLSYLEAYNPSDGTWLRLADL-QVPRSGLAGCVVGGLLYAV 76
>pdb|2XN4|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl2
(mayven)
pdb|2XN4|B Chain B, Crystal Structure Of The Kelch Domain Of Human Klhl2
(mayven)
Length = 302
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 14/73 (19%)
Query: 70 QLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNE 129
+ YD + W + LPS+ G+V AG +F +GG +GS
Sbjct: 33 ECYDFKEERWHQVAELPSR---RCRAGMVYMAGLVFAVGG-----------FNGSLRVRT 78
Query: 130 VWSYDPVTRGFTS 142
V SYDPV +TS
Sbjct: 79 VDSYDPVKDQWTS 91
>pdb|3QJA|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis
Indole-3-Glycerol Phosphate Synthase (Trpc) In Apo Form
pdb|3T40|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Indole
Glycerol Phosphate Synthase (Igps) Complex With
N-2-Carboxyphenyl Glycine (Cpg)
pdb|3T44|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Indole
Glycerol Phosphate Synthase (Igps) In Complex With
Indole Glycerol Phosphate (Igp) Amd Anthranilate
pdb|3T55|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Indole
Glycerol Phosphate Synthase (Igps) In Complex With
Phenoxymethyl Benzoic Acid (Pmba)
pdb|3T78|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Indole
Glycerol Phosphate Synthase (Igps) In Complex With
5-Fluoroanthranilate
Length = 272
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 60 VCAFDPENLWQLYDPLRDLWITL-PVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAV 114
V + +L L D RD + + P LPS + +A GV TA L G G+DAV
Sbjct: 185 VIGVNARDLMTL-DVDRDCFARIAPGLPSSVIRIAESGVRGTADLLAYAGAGADAV 239
>pdb|4FB7|A Chain A, The Apo Form Of Idole-3-Glycerol Phosphate Synthase (Trpc)
Form Mycobacterium Tuberculosis
Length = 275
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 76 RDLWITL-PVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAV 114
RD + + P LPS + +A GV TA L G G+DAV
Sbjct: 203 RDCFARIAPGLPSSVIRIAESGVRGTADLLAYAGAGADAV 242
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.449
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,673,809
Number of Sequences: 62578
Number of extensions: 387461
Number of successful extensions: 750
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 728
Number of HSP's gapped (non-prelim): 34
length of query: 317
length of database: 14,973,337
effective HSP length: 99
effective length of query: 218
effective length of database: 8,778,115
effective search space: 1913629070
effective search space used: 1913629070
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)