Query 021080
Match_columns 317
No_of_seqs 170 out of 2056
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 07:26:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021080.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021080hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4441 Proteins containing BT 100.0 6.2E-38 1.3E-42 297.7 27.6 238 53-316 282-569 (571)
2 PHA02713 hypothetical protein; 100.0 4.3E-36 9.3E-41 286.0 19.4 222 29-302 278-543 (557)
3 PHA02713 hypothetical protein; 100.0 6.8E-35 1.5E-39 277.8 26.4 215 57-316 259-512 (557)
4 PLN02153 epithiospecifier prot 100.0 4E-34 8.6E-39 258.6 22.6 248 33-315 7-311 (341)
5 PHA02790 Kelch-like protein; P 100.0 6E-33 1.3E-37 260.8 25.1 196 54-299 270-477 (480)
6 TIGR03547 muta_rot_YjhT mutatr 100.0 2.2E-32 4.8E-37 247.9 24.4 232 53-315 15-320 (346)
7 PHA03098 kelch-like protein; P 100.0 2.1E-32 4.5E-37 261.8 24.0 210 53-308 292-527 (534)
8 PLN02193 nitrile-specifier pro 100.0 3E-32 6.4E-37 255.5 24.1 242 33-308 151-432 (470)
9 PRK14131 N-acetylneuraminic ac 100.0 7.4E-31 1.6E-35 240.0 24.8 232 53-315 36-342 (376)
10 TIGR03548 mutarot_permut cycli 100.0 1.2E-30 2.6E-35 234.3 24.7 225 53-315 11-302 (323)
11 KOG4441 Proteins containing BT 100.0 6.1E-30 1.3E-34 243.2 21.1 195 99-316 282-522 (571)
12 PLN02193 nitrile-specifier pro 100.0 3.1E-28 6.8E-33 228.3 27.0 222 55-316 120-377 (470)
13 KOG4693 Uncharacterized conser 100.0 4.3E-29 9.3E-34 205.8 18.4 223 54-315 22-301 (392)
14 PHA03098 kelch-like protein; P 100.0 1.2E-28 2.6E-33 235.9 24.3 216 56-315 251-486 (534)
15 PLN02153 epithiospecifier prot 100.0 2.7E-28 5.9E-33 220.6 24.5 205 74-315 4-250 (341)
16 TIGR03548 mutarot_permut cycli 100.0 1.3E-28 2.9E-33 221.0 19.1 200 34-272 52-316 (323)
17 PRK14131 N-acetylneuraminic ac 100.0 1.5E-28 3.2E-33 224.9 19.4 243 32-298 61-374 (376)
18 TIGR03547 muta_rot_YjhT mutatr 100.0 3.6E-28 7.8E-33 220.3 19.5 235 31-288 39-344 (346)
19 PHA02790 Kelch-like protein; P 100.0 1.5E-27 3.3E-32 224.3 22.7 168 97-316 267-446 (480)
20 KOG4693 Uncharacterized conser 99.9 4.1E-25 8.9E-30 182.3 14.3 196 45-270 76-313 (392)
21 KOG0379 Kelch repeat-containin 99.9 9.6E-23 2.1E-27 191.0 22.7 229 41-308 54-321 (482)
22 KOG1230 Protein containing rep 99.9 2.9E-23 6.4E-28 180.6 16.3 257 5-299 33-347 (521)
23 KOG0379 Kelch repeat-containin 99.9 2.9E-20 6.3E-25 174.4 20.0 187 88-313 57-272 (482)
24 KOG1230 Protein containing rep 99.8 5.7E-20 1.2E-24 160.2 16.5 196 91-315 66-305 (521)
25 KOG4152 Host cell transcriptio 99.8 3E-19 6.4E-24 159.5 12.8 248 34-315 18-331 (830)
26 KOG4152 Host cell transcriptio 99.7 7.5E-17 1.6E-21 144.3 13.7 221 28-271 62-344 (830)
27 COG3055 Uncharacterized protei 99.7 5.1E-16 1.1E-20 133.9 17.4 201 54-291 45-375 (381)
28 COG3055 Uncharacterized protei 99.5 2.4E-13 5.2E-18 117.5 14.8 183 81-308 29-271 (381)
29 PF13964 Kelch_6: Kelch motif 99.3 5.5E-12 1.2E-16 80.6 5.8 50 249-306 1-50 (50)
30 PF13964 Kelch_6: Kelch motif 99.3 1.8E-11 4E-16 78.1 6.4 49 92-171 2-50 (50)
31 PF01344 Kelch_1: Kelch motif; 99.1 1.9E-10 4.1E-15 72.4 4.9 47 249-303 1-47 (47)
32 KOG2437 Muskelin [Signal trans 99.1 6.2E-11 1.3E-15 106.6 3.4 165 75-271 237-459 (723)
33 PF01344 Kelch_1: Kelch motif; 99.0 2.8E-10 6.1E-15 71.6 3.8 46 92-167 2-47 (47)
34 PF13415 Kelch_3: Galactose ox 98.9 3.1E-09 6.7E-14 67.4 5.5 48 259-314 1-48 (49)
35 PF07646 Kelch_2: Kelch motif; 98.9 3.6E-09 7.7E-14 67.1 5.7 49 249-303 1-49 (49)
36 PF13418 Kelch_4: Galactose ox 98.9 2.5E-09 5.5E-14 67.8 4.6 48 249-304 1-49 (49)
37 PF07646 Kelch_2: Kelch motif; 98.9 1E-08 2.2E-13 65.0 6.3 48 92-167 2-49 (49)
38 TIGR01640 F_box_assoc_1 F-box 98.8 3.1E-06 6.6E-11 72.3 23.1 202 53-292 3-230 (230)
39 PF13415 Kelch_3: Galactose ox 98.8 1.1E-08 2.3E-13 64.9 5.9 49 101-179 1-49 (49)
40 smart00612 Kelch Kelch domain. 98.8 1.5E-08 3.2E-13 63.4 5.1 35 146-181 13-47 (47)
41 PF13418 Kelch_4: Galactose ox 98.8 9.2E-09 2E-13 65.2 4.1 46 92-167 2-48 (49)
42 smart00612 Kelch Kelch domain. 98.7 1.5E-08 3.2E-13 63.4 4.4 46 261-316 1-46 (47)
43 KOG2437 Muskelin [Signal trans 98.6 8.5E-09 1.9E-13 93.1 1.6 219 55-302 272-544 (723)
44 PLN02772 guanylate kinase 98.4 3.2E-06 6.9E-11 76.4 10.6 80 91-201 24-110 (398)
45 PF12937 F-box-like: F-box-lik 98.3 3.9E-07 8.6E-12 57.1 2.9 43 5-47 1-43 (47)
46 PF13854 Kelch_5: Kelch motif 98.2 4.5E-06 9.8E-11 50.8 4.9 22 91-112 4-25 (42)
47 PF07250 Glyoxal_oxid_N: Glyox 98.1 4.5E-05 9.7E-10 64.9 12.2 142 68-246 47-210 (243)
48 PF13854 Kelch_5: Kelch motif 98.1 6.2E-06 1.3E-10 50.2 4.9 38 248-291 3-41 (42)
49 PF07250 Glyoxal_oxid_N: Glyox 98.1 0.00022 4.8E-09 60.7 15.1 140 147-305 45-211 (243)
50 PF00646 F-box: F-box domain; 98.1 1.4E-06 3.1E-11 54.7 1.3 44 5-48 3-46 (48)
51 PLN03215 ascorbic acid mannose 98.0 0.0015 3.2E-08 59.1 19.9 37 5-41 4-41 (373)
52 smart00256 FBOX A Receptor for 98.0 4.3E-06 9.4E-11 50.4 2.1 38 8-45 1-38 (41)
53 PLN02772 guanylate kinase 98.0 5.5E-05 1.2E-09 68.5 9.8 80 169-292 24-110 (398)
54 TIGR01640 F_box_assoc_1 F-box 97.9 0.0014 3E-08 55.8 16.6 146 148-303 14-188 (230)
55 PRK11138 outer membrane biogen 97.9 0.0051 1.1E-07 56.9 21.2 144 54-241 68-232 (394)
56 PRK11138 outer membrane biogen 97.7 0.0025 5.4E-08 58.9 17.1 110 175-298 115-231 (394)
57 PF13360 PQQ_2: PQQ-like domai 97.7 0.01 2.2E-07 50.4 19.1 180 54-298 35-238 (238)
58 KOG0281 Beta-TrCP (transducin 97.6 0.00039 8.5E-09 60.7 9.4 43 3-45 73-119 (499)
59 PF13360 PQQ_2: PQQ-like domai 97.5 0.018 3.9E-07 48.9 18.6 138 149-303 4-153 (238)
60 TIGR03300 assembly_YfgL outer 97.5 0.039 8.4E-07 50.6 21.2 138 54-241 64-217 (377)
61 TIGR03300 assembly_YfgL outer 97.1 0.041 8.8E-07 50.5 17.0 132 149-298 76-216 (377)
62 PF07893 DUF1668: Protein of u 96.9 0.052 1.1E-06 49.2 14.9 95 150-245 88-218 (342)
63 PF07893 DUF1668: Protein of u 96.8 0.051 1.1E-06 49.3 14.0 124 55-208 76-216 (342)
64 PF12768 Rax2: Cortical protei 96.5 0.37 8E-06 42.3 17.2 95 147-243 15-130 (281)
65 PF05096 Glu_cyclase_2: Glutam 96.5 0.094 2E-06 45.1 13.1 91 176-268 50-148 (264)
66 PF03089 RAG2: Recombination a 95.9 0.092 2E-06 45.2 9.8 92 162-272 80-177 (337)
67 PF08450 SGL: SMP-30/Gluconola 95.9 1 2.2E-05 38.5 18.9 195 55-314 11-232 (246)
68 TIGR03866 PQQ_ABC_repeats PQQ- 95.8 1.1 2.4E-05 38.7 20.3 90 148-240 53-149 (300)
69 TIGR03075 PQQ_enz_alc_DH PQQ-d 95.8 0.2 4.3E-06 48.3 13.0 116 175-298 64-197 (527)
70 PF05096 Glu_cyclase_2: Glutam 95.8 0.53 1.1E-05 40.6 14.1 95 148-245 68-166 (264)
71 cd00216 PQQ_DH Dehydrogenases 95.7 1.2 2.5E-05 42.6 17.8 122 177-299 106-273 (488)
72 KOG2120 SCF ubiquitin ligase, 95.2 0.0088 1.9E-07 52.0 1.4 40 5-44 98-137 (419)
73 PF12768 Rax2: Cortical protei 95.0 0.44 9.5E-06 41.8 11.3 106 66-208 15-130 (281)
74 TIGR03075 PQQ_enz_alc_DH PQQ-d 94.6 3.8 8.2E-05 39.5 17.8 123 176-299 116-288 (527)
75 KOG2055 WD40 repeat protein [G 94.6 1.3 2.9E-05 40.7 13.4 145 55-237 225-375 (514)
76 KOG2997 F-box protein FBX9 [Ge 94.6 0.024 5.1E-07 49.5 2.3 46 5-50 107-157 (366)
77 KOG0291 WD40-repeat-containing 94.5 4.6 9.9E-05 39.7 17.4 132 148-292 330-468 (893)
78 smart00284 OLF Olfactomedin-li 94.5 2.2 4.9E-05 36.7 14.0 120 159-292 63-210 (255)
79 TIGR03074 PQQ_membr_DH membran 94.4 0.64 1.4E-05 46.7 12.3 121 174-298 188-352 (764)
80 PF03089 RAG2: Recombination a 94.0 0.23 5E-06 42.8 7.0 86 82-188 81-172 (337)
81 COG1520 FOG: WD40-like repeat 94.0 4.9 0.00011 36.7 18.7 195 54-300 67-278 (370)
82 PF08268 FBA_3: F-box associat 93.9 0.68 1.5E-05 35.4 9.2 81 177-299 2-87 (129)
83 KOG0316 Conserved WD40 repeat- 93.8 3.7 7.9E-05 34.8 15.1 106 55-204 71-178 (307)
84 cd00216 PQQ_DH Dehydrogenases 93.5 1.4 3E-05 42.1 12.3 119 175-298 56-191 (488)
85 KOG0274 Cdc4 and related F-box 93.4 7.9 0.00017 37.4 18.8 44 2-45 105-148 (537)
86 PF02191 OLF: Olfactomedin-lik 93.0 2.2 4.8E-05 36.7 11.6 122 157-292 56-205 (250)
87 cd00094 HX Hemopexin-like repe 92.9 4.6 9.9E-05 33.3 16.4 96 181-292 63-177 (194)
88 COG1520 FOG: WD40-like repeat 92.6 7.9 0.00017 35.3 17.1 137 149-299 79-226 (370)
89 KOG2055 WD40 repeat protein [G 92.0 4.9 0.00011 37.1 12.7 127 148-292 237-376 (514)
90 KOG0310 Conserved WD40 repeat- 91.8 11 0.00024 35.1 16.4 118 149-271 177-302 (487)
91 cd00094 HX Hemopexin-like repe 91.1 7.6 0.00016 32.0 15.2 56 180-237 110-176 (194)
92 PF08450 SGL: SMP-30/Gluconola 90.9 6.5 0.00014 33.5 12.4 112 180-299 11-129 (246)
93 TIGR03866 PQQ_ABC_repeats PQQ- 90.9 9.7 0.00021 32.8 16.1 89 148-239 11-106 (300)
94 PRK13684 Ycf48-like protein; P 89.4 16 0.00035 33.0 16.0 109 154-267 200-321 (334)
95 KOG0266 WD40 repeat-containing 88.7 22 0.00047 33.6 15.3 56 148-204 268-323 (456)
96 TIGR03074 PQQ_membr_DH membran 87.0 37 0.00081 34.4 18.4 122 177-299 257-431 (764)
97 PRK04792 tolB translocation pr 86.1 31 0.00067 32.5 21.1 93 148-242 286-390 (448)
98 PRK11028 6-phosphogluconolacto 85.0 28 0.0006 31.0 19.5 140 57-237 3-157 (330)
99 KOG2321 WD40 repeat protein [G 84.9 38 0.00083 32.6 15.0 111 56-202 146-261 (703)
100 PRK04792 tolB translocation pr 83.7 39 0.00085 31.8 19.0 136 148-299 242-389 (448)
101 PF03178 CPSF_A: CPSF A subuni 82.3 36 0.00077 30.3 12.9 109 191-315 62-181 (321)
102 TIGR02800 propeller_TolB tol-p 82.1 41 0.0009 30.9 20.1 93 148-242 258-362 (417)
103 PRK13684 Ycf48-like protein; P 81.4 41 0.00089 30.3 18.4 109 156-267 160-278 (334)
104 KOG4378 Nuclear protein COP1 [ 81.3 45 0.00098 31.5 12.5 56 56-111 90-152 (673)
105 PF02191 OLF: Olfactomedin-lik 81.3 35 0.00075 29.5 16.6 173 55-266 30-237 (250)
106 PRK04922 tolB translocation pr 80.3 51 0.0011 30.8 17.7 58 148-207 272-332 (433)
107 PLN00181 protein SPA1-RELATED; 80.2 73 0.0016 32.5 18.3 57 180-236 629-690 (793)
108 cd00200 WD40 WD40 domain, foun 79.9 33 0.00072 28.4 17.4 89 180-269 188-282 (289)
109 KOG2321 WD40 repeat protein [G 79.4 19 0.00041 34.5 9.6 56 146-202 153-208 (703)
110 PF09910 DUF2139: Uncharacteri 79.4 44 0.00096 29.5 17.7 59 177-236 156-230 (339)
111 PRK00178 tolB translocation pr 78.9 56 0.0012 30.4 20.0 94 148-243 267-372 (430)
112 cd00200 WD40 WD40 domain, foun 78.8 36 0.00079 28.2 19.5 59 181-239 105-168 (289)
113 PLN03215 ascorbic acid mannose 78.4 55 0.0012 30.1 14.8 28 76-108 189-216 (373)
114 PRK11028 6-phosphogluconolacto 78.0 50 0.0011 29.3 20.2 109 181-301 138-269 (330)
115 PRK04043 tolB translocation pr 77.9 61 0.0013 30.3 16.8 59 148-207 257-317 (419)
116 PF07734 FBA_1: F-box associat 77.5 22 0.00047 28.3 8.6 32 176-207 1-38 (164)
117 PF03178 CPSF_A: CPSF A subuni 76.9 54 0.0012 29.2 15.0 114 148-267 62-190 (321)
118 COG3823 Glutamine cyclotransfe 76.9 23 0.00051 29.6 8.4 91 175-267 50-148 (262)
119 PRK00178 tolB translocation pr 76.8 64 0.0014 30.0 18.9 137 148-300 223-371 (430)
120 PRK03629 tolB translocation pr 76.4 67 0.0015 30.0 17.9 57 148-206 267-326 (429)
121 TIGR02800 propeller_TolB tol-p 76.1 64 0.0014 29.6 19.4 136 148-300 214-362 (417)
122 PLN02919 haloacid dehalogenase 75.7 1.2E+02 0.0025 32.4 22.6 100 181-292 752-890 (1057)
123 TIGR02658 TTQ_MADH_Hv methylam 74.7 68 0.0015 29.2 18.0 60 219-292 259-332 (352)
124 PLN02919 haloacid dehalogenase 74.5 1.2E+02 0.0027 32.1 16.3 60 178-237 812-889 (1057)
125 KOG0315 G-protein beta subunit 74.0 57 0.0012 28.1 17.8 219 66-308 60-302 (311)
126 KOG3545 Olfactomedin and relat 73.8 53 0.0011 28.2 10.0 121 157-292 55-204 (249)
127 PRK05137 tolB translocation pr 73.4 80 0.0017 29.5 20.9 88 148-237 270-367 (435)
128 PF08268 FBA_3: F-box associat 72.2 40 0.00086 25.5 9.2 61 147-207 19-88 (129)
129 PF06433 Me-amine-dh_H: Methyl 72.1 76 0.0017 28.7 16.1 193 54-292 105-322 (342)
130 PF10282 Lactonase: Lactonase, 72.1 76 0.0016 28.6 19.2 184 68-300 16-232 (345)
131 KOG0289 mRNA splicing factor [ 71.6 87 0.0019 29.1 16.7 96 148-246 369-474 (506)
132 PF06433 Me-amine-dh_H: Methyl 71.5 30 0.00066 31.2 8.5 38 259-303 249-286 (342)
133 PTZ00421 coronin; Provisional 71.4 99 0.0021 29.7 20.1 24 179-202 178-201 (493)
134 COG4257 Vgb Streptogramin lyas 70.5 16 0.00035 31.9 6.3 63 148-211 254-317 (353)
135 KOG1538 Uncharacterized conser 69.9 1.2E+02 0.0026 30.0 13.2 109 55-188 24-151 (1081)
136 PF02897 Peptidase_S9_N: Proly 68.6 98 0.0021 28.5 14.9 135 148-299 252-411 (414)
137 PF13570 PQQ_3: PQQ-like domai 68.1 15 0.00032 21.3 4.2 23 214-236 16-39 (40)
138 COG4257 Vgb Streptogramin lyas 66.1 93 0.002 27.3 15.9 108 177-299 196-312 (353)
139 smart00284 OLF Olfactomedin-li 65.7 90 0.002 27.0 16.9 172 55-265 34-241 (255)
140 KOG0310 Conserved WD40 repeat- 65.4 1.2E+02 0.0027 28.5 14.5 107 178-301 163-275 (487)
141 PF10282 Lactonase: Lactonase, 65.0 1.1E+02 0.0023 27.6 18.4 136 148-300 166-332 (345)
142 KOG0289 mRNA splicing factor [ 64.4 1.2E+02 0.0027 28.2 11.2 117 172-305 349-475 (506)
143 KOG0285 Pleiotropic regulator 64.4 1.1E+02 0.0025 27.7 13.9 54 189-242 338-398 (460)
144 PF14870 PSII_BNR: Photosynthe 62.8 1.1E+02 0.0024 27.2 13.9 105 157-265 90-203 (302)
145 COG3823 Glutamine cyclotransfe 62.5 94 0.002 26.2 9.3 110 95-240 49-162 (262)
146 PRK05137 tolB translocation pr 62.4 1.4E+02 0.0029 28.0 20.3 92 148-241 226-329 (435)
147 KOG0272 U4/U6 small nuclear ri 60.1 1.5E+02 0.0032 27.6 11.0 92 151-245 328-427 (459)
148 PRK04922 tolB translocation pr 58.8 1.6E+02 0.0034 27.5 16.9 59 148-208 316-377 (433)
149 KOG4499 Ca2+-binding protein R 58.2 1.2E+02 0.0026 26.0 9.7 44 178-221 220-264 (310)
150 PF14870 PSII_BNR: Photosynthe 57.0 1.4E+02 0.0031 26.5 18.7 110 157-268 133-252 (302)
151 COG4946 Uncharacterized protei 52.6 2.1E+02 0.0046 27.2 16.0 96 192-306 207-310 (668)
152 KOG0649 WD40 repeat protein [G 51.4 1.6E+02 0.0035 25.4 12.5 27 54-82 125-151 (325)
153 TIGR02658 TTQ_MADH_Hv methylam 49.8 2.1E+02 0.0045 26.2 10.8 96 148-246 27-146 (352)
154 PF12217 End_beta_propel: Cata 48.4 1.9E+02 0.004 25.3 13.0 53 175-227 195-257 (367)
155 KOG2048 WD40 repeat protein [G 47.1 3E+02 0.0064 27.3 19.3 43 66-110 46-89 (691)
156 KOG1446 Histone H3 (Lys4) meth 46.2 2.1E+02 0.0046 25.4 15.9 23 259-292 242-264 (311)
157 KOG3545 Olfactomedin and relat 45.3 2E+02 0.0043 24.7 13.4 63 173-235 172-245 (249)
158 PRK02889 tolB translocation pr 45.3 2.6E+02 0.0056 26.1 20.3 93 148-242 220-324 (427)
159 KOG0296 Angio-associated migra 44.5 2.5E+02 0.0054 25.6 14.5 82 148-234 86-176 (399)
160 PF13013 F-box-like_2: F-box-l 44.5 18 0.00038 26.8 2.0 29 5-33 22-50 (109)
161 KOG3669 Uncharacterized conser 43.1 3.3E+02 0.0071 26.6 13.0 136 152-300 212-369 (705)
162 KOG4341 F-box protein containi 43.0 13 0.00027 34.5 1.2 38 6-43 73-110 (483)
163 KOG1275 PAB-dependent poly(A) 40.8 1.5E+02 0.0032 30.6 8.0 122 173-303 139-263 (1118)
164 COG4880 Secreted protein conta 39.9 3.3E+02 0.0071 25.7 12.2 31 214-244 570-600 (603)
165 PRK03629 tolB translocation pr 39.8 3.2E+02 0.0069 25.5 16.4 58 149-208 312-372 (429)
166 PLN00033 photosystem II stabil 39.2 3.2E+02 0.007 25.4 20.4 89 179-267 248-346 (398)
167 PF03088 Str_synth: Strictosid 38.6 1.4E+02 0.0031 21.1 6.4 23 189-211 35-57 (89)
168 KOG0286 G-protein beta subunit 38.3 2.9E+02 0.0062 24.6 19.1 111 180-308 198-317 (343)
169 KOG2048 WD40 repeat protein [G 38.1 4.1E+02 0.009 26.3 15.7 76 161-237 419-506 (691)
170 KOG0772 Uncharacterized conser 36.6 4E+02 0.0086 25.7 13.1 227 33-314 204-465 (641)
171 PF02239 Cytochrom_D1: Cytochr 36.3 3.4E+02 0.0074 24.8 10.3 99 181-292 6-110 (369)
172 KOG0293 WD40 repeat-containing 35.2 3.8E+02 0.0082 25.1 13.6 128 158-306 347-482 (519)
173 smart00564 PQQ beta-propeller 34.7 77 0.0017 16.9 3.9 10 191-200 16-25 (33)
174 KOG0647 mRNA export protein (c 33.7 3.5E+02 0.0075 24.2 15.4 256 5-272 22-318 (347)
175 PF02897 Peptidase_S9_N: Proly 33.1 3.9E+02 0.0084 24.5 17.6 144 55-237 238-405 (414)
176 KOG1188 WD40 repeat protein [G 33.0 3.8E+02 0.0081 24.3 10.0 57 189-245 92-161 (376)
177 KOG4378 Nuclear protein COP1 [ 32.9 2.3E+02 0.0049 27.1 7.5 51 148-201 231-282 (673)
178 PF08662 eIF2A: Eukaryotic tra 32.4 2.8E+02 0.006 22.6 10.0 102 180-292 71-181 (194)
179 KOG0266 WD40 repeat-containing 31.8 4.4E+02 0.0096 24.8 14.2 91 148-240 225-322 (456)
180 KOG0291 WD40-repeat-containing 31.3 5.7E+02 0.012 25.9 15.6 20 92-111 435-456 (893)
181 KOG1523 Actin-related protein 30.9 4E+02 0.0086 24.0 8.5 90 147-238 31-135 (361)
182 TIGR03032 conserved hypothetic 30.9 4E+02 0.0087 24.0 9.6 76 212-292 205-292 (335)
183 COG4946 Uncharacterized protei 30.4 2.1E+02 0.0047 27.1 6.9 78 157-237 215-296 (668)
184 KOG0316 Conserved WD40 repeat- 30.3 3.6E+02 0.0077 23.3 13.8 51 58-111 114-164 (307)
185 PLN00033 photosystem II stabil 29.5 4.7E+02 0.01 24.3 14.0 108 157-267 269-389 (398)
186 PF14781 BBS2_N: Ciliary BBSom 29.1 1.2E+02 0.0026 23.4 4.4 20 182-202 65-84 (136)
187 PF07433 DUF1513: Protein of u 29.0 4.2E+02 0.0091 23.7 17.4 114 55-203 16-150 (305)
188 KOG0263 Transcription initiati 28.8 4.7E+02 0.01 26.2 9.3 24 177-200 627-650 (707)
189 COG3940 Predicted beta-xylosid 28.8 3.5E+02 0.0077 22.7 8.8 107 159-266 57-210 (324)
190 PRK02888 nitrous-oxide reducta 28.8 5.9E+02 0.013 25.3 13.8 60 219-292 287-353 (635)
191 KOG0263 Transcription initiati 28.6 6.2E+02 0.013 25.5 10.0 72 128-202 538-610 (707)
192 KOG0318 WD40 repeat stress pro 28.5 5.5E+02 0.012 24.8 10.2 60 178-237 452-518 (603)
193 PTZ00420 coronin; Provisional 27.9 5.9E+02 0.013 25.0 11.5 101 182-291 139-249 (568)
194 PF06058 DCP1: Dcp1-like decap 27.8 82 0.0018 23.8 3.3 26 191-226 29-54 (122)
195 PRK04043 tolB translocation pr 27.8 5.1E+02 0.011 24.2 16.7 21 66-86 256-276 (419)
196 KOG0640 mRNA cleavage stimulat 27.6 4.6E+02 0.0099 23.6 9.2 99 66-203 237-339 (430)
197 PRK10115 protease 2; Provision 27.4 6.5E+02 0.014 25.3 18.1 93 150-243 295-403 (686)
198 smart00120 HX Hemopexin-like r 26.9 94 0.002 18.1 3.0 19 219-237 9-27 (45)
199 PF12217 End_beta_propel: Cata 26.5 4.4E+02 0.0095 23.1 10.9 56 55-112 200-260 (367)
200 smart00546 CUE Domain that may 25.8 30 0.00065 20.5 0.5 17 3-19 11-27 (43)
201 KOG0278 Serine/threonine kinas 25.6 4.5E+02 0.0098 22.9 10.7 120 147-271 164-290 (334)
202 COG4447 Uncharacterized protei 24.9 4.8E+02 0.01 23.1 7.7 113 92-243 45-165 (339)
203 KOG1332 Vesicle coat complex C 24.2 4.7E+02 0.01 22.7 7.9 98 105-245 178-298 (299)
204 PF06079 Apyrase: Apyrase; In 24.0 4.1E+02 0.009 23.5 7.3 53 214-266 58-117 (291)
205 PF09910 DUF2139: Uncharacteri 23.9 5.3E+02 0.011 23.1 13.4 106 55-201 117-232 (339)
206 PF02845 CUE: CUE domain; Int 23.6 48 0.001 19.5 1.1 18 3-20 10-27 (42)
207 KOG0282 mRNA splicing factor [ 22.9 3.2E+02 0.007 25.9 6.7 43 102-169 312-354 (503)
208 PF00045 Hemopexin: Hemopexin; 22.5 1.8E+02 0.0039 17.1 3.9 21 216-236 5-26 (45)
209 PTZ00421 coronin; Provisional 22.2 7E+02 0.015 23.9 15.6 57 181-237 138-199 (493)
210 COG3391 Uncharacterized conser 21.5 6.3E+02 0.014 23.1 13.7 132 148-292 96-241 (381)
211 TIGR03032 conserved hypothetic 21.4 2.9E+02 0.0063 24.9 5.9 54 178-231 210-263 (335)
212 PRK01742 tolB translocation pr 21.3 6.7E+02 0.014 23.3 19.4 91 149-242 273-369 (429)
213 COG0823 TolB Periplasmic compo 21.0 7E+02 0.015 23.4 11.6 19 191-209 350-369 (425)
214 PF01011 PQQ: PQQ enzyme repea 20.9 1.8E+02 0.0038 16.5 4.2 17 190-206 9-27 (38)
215 PLN00181 protein SPA1-RELATED; 20.2 9.3E+02 0.02 24.6 16.0 87 148-237 555-649 (793)
No 1
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=6.2e-38 Score=297.67 Aligned_cols=238 Identities=25% Similarity=0.419 Sum_probs=209.2
Q ss_pred CcCceEEEEEeCC-----CCceEEEeCCCCCEeecCCCCccccccCCeeEEEeCCEEEEEcCcCCCCCCCCCCCCCcccc
Q 021080 53 SSENLLCVCAFDP-----ENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFAT 127 (317)
Q Consensus 53 ~~~~~l~v~gg~~-----~~~~~~yd~~~~~W~~~~~~p~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~ 127 (317)
...+.|+++||.. .+.+++||+.+++|..+.+||.+ |..+++++++|+||++||.+. +....
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~---r~~~~~~~~~~~lYv~GG~~~----------~~~~l 348 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSP---RCRVGVAVLNGKLYVVGGYDS----------GSDRL 348 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcc---cccccEEEECCEEEEEccccC----------CCccc
Confidence 3467899999954 57899999999999999999986 999999999999999999873 22378
Q ss_pred cceeEecccCC---------------------------CCCCCcCCCceeEEeeCCCCceeeCCCCCccCCCceEEEEEC
Q 021080 128 NEVWSYDPVTR---------------------------GFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHNSACTGVVIG 180 (317)
Q Consensus 128 ~~~~~~d~~~~---------------------------G~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~r~~~~~~~~~ 180 (317)
+++++||+.++ |..+.....+++|+|||.+++|+.+++|+.+ |.++++++++
T Consensus 349 ~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~-r~~~gv~~~~ 427 (571)
T KOG4441|consen 349 SSVERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTR-RSGHGVAVLG 427 (571)
T ss_pred ceEEEecCCCCceeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcc-eeeeEEEEEC
Confidence 99999999998 4444577889999999999999999999998 9999999999
Q ss_pred CEEEEEec------CceeEEEEeCCCCcEEeccCCcc---CCcEEEEcCeEEEEeC-------cEEEEecCCc--eEEEe
Q 021080 181 GKVHVLHK------GLSTVQVLDHMGLGWTVEDYGWL---QGPMAIVHDSVYLMSH-------GLIIKQHRDV--RKVVA 242 (317)
Q Consensus 181 g~lyv~gG------~~~~v~~yd~~~~~W~~~~~~~~---~~~~~~~~~~ly~~g~-------~~~~~yd~~~--W~~v~ 242 (317)
|+||++|| .++++++|||.+++|+.+++|.. .+.+++++++||++|| ..+..||+++ |..+.
T Consensus 428 g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~ 507 (571)
T KOG4441|consen 428 GKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVA 507 (571)
T ss_pred CEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcc
Confidence 99999999 45889999999999999999986 6788999999999998 3488999988 99999
Q ss_pred ccccccccccEEEEEECCeEEEEeCcccCCCCceecccCcceeEeecCCCCCceeecccCCCCCCceeeeeEee
Q 021080 243 SASEFRRRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAERPTWRQVSPMTRCRGTILGCTQLR 316 (317)
Q Consensus 243 ~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~~~~W~~~~~~p~~~~~~~~~~~~~ 316 (317)
.|+ .+|.+.++++.+++||++||+++. ..++.|++|||+++ +|+...++...|.. .+|+++.
T Consensus 508 ~m~--~~rs~~g~~~~~~~ly~vGG~~~~-------~~l~~ve~ydp~~d--~W~~~~~~~~~~~~-~~~~~~~ 569 (571)
T KOG4441|consen 508 PMT--SPRSAVGVVVLGGKLYAVGGFDGN-------NNLNTVECYDPETD--TWTEVTEPESGRGG-AGVAVIP 569 (571)
T ss_pred cCc--cccccccEEEECCEEEEEecccCc-------cccceeEEcCCCCC--ceeeCCCccccccC-cceEEec
Confidence 998 789999999999999999998777 47899999999999 99999995555554 5666553
No 2
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=4.3e-36 Score=286.01 Aligned_cols=222 Identities=13% Similarity=0.189 Sum_probs=188.1
Q ss_pred hhcCHhHHHhhcChhhHHHHHhc--CCcCceEEEEEeCC-----CCceEEEeCCCCCEeecCCCCccccccCCeeEEEeC
Q 021080 29 ELVSRSWRAAIRSPELFKARQEV--GSSENLLCVCAFDP-----ENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVSTA 101 (317)
Q Consensus 29 ~~v~k~w~~l~~s~~~~~~~~~~--~~~~~~l~v~gg~~-----~~~~~~yd~~~~~W~~~~~~p~~~~~r~~~~~~~~~ 101 (317)
....+.|..+. .++.++..+ +..++.||++||.. .+.+++|||.+++|..+++||.+ |..+++++++
T Consensus 278 d~~~~~W~~l~---~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~---R~~~~~~~~~ 351 (557)
T PHA02713 278 NINTMEYSVIS---TIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKN---RCRFSLAVID 351 (557)
T ss_pred eCCCCeEEECC---CCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcch---hhceeEEEEC
Confidence 34456788763 344444433 34588999999942 46799999999999999999986 9999999999
Q ss_pred CEEEEEcCcCCCCCCCCCCCCCcccccceeEecccCCCCCCCcCCCceeEEeeCCCCceeeCCCCCccCCCceEEEEECC
Q 021080 102 GKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRGFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHNSACTGVVIGG 181 (317)
Q Consensus 102 ~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~G~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~r~~~~~~~~~g 181 (317)
++||++||.++ ....+++++|||.+++|+.+++||.+ |..+++++++|
T Consensus 352 g~IYviGG~~~-------------------------------~~~~~sve~Ydp~~~~W~~~~~mp~~-r~~~~~~~~~g 399 (557)
T PHA02713 352 DTIYAIGGQNG-------------------------------TNVERTIECYTMGDDKWKMLPDMPIA-LSSYGMCVLDQ 399 (557)
T ss_pred CEEEEECCcCC-------------------------------CCCCceEEEEECCCCeEEECCCCCcc-cccccEEEECC
Confidence 99999999753 22357899999999999999999999 99999999999
Q ss_pred EEEEEecC-----------------------ceeEEEEeCCCCcEEeccCCcc---CCcEEEEcCeEEEEeC--------
Q 021080 182 KVHVLHKG-----------------------LSTVQVLDHMGLGWTVEDYGWL---QGPMAIVHDSVYLMSH-------- 227 (317)
Q Consensus 182 ~lyv~gG~-----------------------~~~v~~yd~~~~~W~~~~~~~~---~~~~~~~~~~ly~~g~-------- 227 (317)
+||++||. .+.+++|||.+++|+.+++++. .+.+++++|+||++||
T Consensus 400 ~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~ 479 (557)
T PHA02713 400 YIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVK 479 (557)
T ss_pred EEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccc
Confidence 99999992 3579999999999999998865 6678899999999997
Q ss_pred cEEEEecCCc---eEEEeccccccccccEEEEEECCeEEEEeCcccCCCCceecccCcceeEeecCCCCCceeecccC
Q 021080 228 GLIIKQHRDV---RKVVASASEFRRRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAERPTWRQVSPM 302 (317)
Q Consensus 228 ~~~~~yd~~~---W~~v~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~~~~W~~~~~~ 302 (317)
+.+..||+++ |+.+++|| .+|..+++++++|+||++||+++. ..+++||+.++ +|+.+++.
T Consensus 480 ~~ve~Ydp~~~~~W~~~~~m~--~~r~~~~~~~~~~~iyv~Gg~~~~----------~~~e~yd~~~~--~W~~~~~~ 543 (557)
T PHA02713 480 TCIFRYNTNTYNGWELITTTE--SRLSALHTILHDNTIMMLHCYESY----------MLQDTFNVYTY--EWNHICHQ 543 (557)
T ss_pred eeEEEecCCCCCCeeEccccC--cccccceeEEECCEEEEEeeecce----------eehhhcCcccc--cccchhhh
Confidence 2468999873 99999999 689999999999999999998753 26899999999 99999874
No 3
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=6.8e-35 Score=277.78 Aligned_cols=215 Identities=11% Similarity=0.160 Sum_probs=182.8
Q ss_pred eEEEEEeC---CCCceEEEeCCCCCEeecCCCCccccccCCeeEEEeCCEEEEEcCcCCCCCCCCCCCCCcccccceeEe
Q 021080 57 LLCVCAFD---PENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSY 133 (317)
Q Consensus 57 ~l~v~gg~---~~~~~~~yd~~~~~W~~~~~~p~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~ 133 (317)
.+++.||. ....+++||+.+++|..+++||.+ |..+++++++++|||+||....
T Consensus 259 ~l~~~~g~~~~~~~~v~~yd~~~~~W~~l~~mp~~---r~~~~~a~l~~~IYviGG~~~~-------------------- 315 (557)
T PHA02713 259 CLVCHDTKYNVCNPCILVYNINTMEYSVISTIPNH---IINYASAIVDNEIIIAGGYNFN-------------------- 315 (557)
T ss_pred EEEEecCccccCCCCEEEEeCCCCeEEECCCCCcc---ccceEEEEECCEEEEEcCCCCC--------------------
Confidence 45555543 124689999999999999999986 8889999999999999997421
Q ss_pred cccCCCCCCCcCCCceeEEeeCCCCceeeCCCCCccCCCceEEEEECCEEEEEec-----CceeEEEEeCCCCcEEeccC
Q 021080 134 DPVTRGFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHNSACTGVVIGGKVHVLHK-----GLSTVQVLDHMGLGWTVEDY 208 (317)
Q Consensus 134 d~~~~G~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~r~~~~~~~~~g~lyv~gG-----~~~~v~~yd~~~~~W~~~~~ 208 (317)
....+++++||+.+++|..+++||.+ |..+++++++|+||++|| ..+.+++||+.+++|+.+++
T Consensus 316 ----------~~~~~~v~~Yd~~~n~W~~~~~m~~~-R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~ 384 (557)
T PHA02713 316 ----------NPSLNKVYKINIENKIHVELPPMIKN-RCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPD 384 (557)
T ss_pred ----------CCccceEEEEECCCCeEeeCCCCcch-hhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECCC
Confidence 22357899999999999999999999 999999999999999999 24679999999999999998
Q ss_pred Ccc---CCcEEEEcCeEEEEeCc-------------------------EEEEecCCc--eEEEeccccccccccEEEEEE
Q 021080 209 GWL---QGPMAIVHDSVYLMSHG-------------------------LIIKQHRDV--RKVVASASEFRRRIGFAMIGM 258 (317)
Q Consensus 209 ~~~---~~~~~~~~~~ly~~g~~-------------------------~~~~yd~~~--W~~v~~~~~~~~r~~~~~~~~ 258 (317)
++. .+++++++|+||++||. .+..||+++ |+.+++|+ .+|..++++++
T Consensus 385 mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~--~~r~~~~~~~~ 462 (557)
T PHA02713 385 MPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFW--TGTIRPGVVSH 462 (557)
T ss_pred CCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCC--cccccCcEEEE
Confidence 876 56788899999999972 378899987 99999998 67888999999
Q ss_pred CCeEEEEeCcccCCCCceecccCcceeEeecCC-CCCceeecccCCCCCCceeeeeEee
Q 021080 259 GDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGA-ERPTWRQVSPMTRCRGTILGCTQLR 316 (317)
Q Consensus 259 ~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~-~~~~W~~~~~~p~~~~~~~~~~~~~ 316 (317)
+|+||++||.++.. ...+.+++|||++ + +|+.+++||.+|.. +++|+++
T Consensus 463 ~~~IYv~GG~~~~~------~~~~~ve~Ydp~~~~--~W~~~~~m~~~r~~-~~~~~~~ 512 (557)
T PHA02713 463 KDDIYVVCDIKDEK------NVKTCIFRYNTNTYN--GWELITTTESRLSA-LHTILHD 512 (557)
T ss_pred CCEEEEEeCCCCCC------ccceeEEEecCCCCC--CeeEccccCccccc-ceeEEEC
Confidence 99999999987432 1234689999999 9 99999999999998 6777764
No 4
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=4e-34 Score=258.63 Aligned_cols=248 Identities=16% Similarity=0.180 Sum_probs=188.3
Q ss_pred HhHHHhhcCh-hhHHHHHhcCC--cCceEEEEEeCC------CCceEEEeCCCCCEeecCCCCcccc-ccCCeeEEEeCC
Q 021080 33 RSWRAAIRSP-ELFKARQEVGS--SENLLCVCAFDP------ENLWQLYDPLRDLWITLPVLPSKIR-HLAHFGVVSTAG 102 (317)
Q Consensus 33 k~w~~l~~s~-~~~~~~~~~~~--~~~~l~v~gg~~------~~~~~~yd~~~~~W~~~~~~p~~~~-~r~~~~~~~~~~ 102 (317)
.+|..+.... ..+.+|..++. .++.|||+||.. .++++.||+.+++|..+++++..|. .+.+++++++++
T Consensus 7 ~~W~~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~ 86 (341)
T PLN02153 7 GGWIKVEQKGGKGPGPRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGT 86 (341)
T ss_pred CeEEEecCCCCCCCCCCCcceEEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEECC
Confidence 3477764421 24555655543 488999999952 3689999999999999887754321 234788999999
Q ss_pred EEEEEcCcCCCCCCCCCCCCCcccccceeEecccCCCCCCCcCCCceeEEeeCCCCceeeCCCC-----CccCCCceEEE
Q 021080 103 KLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRGFTSCRKSISQAEMYDPEKDVWVPIPDL-----HRTHNSACTGV 177 (317)
Q Consensus 103 ~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~G~~~~~~~~~~~~~yd~~t~~W~~~~~~-----p~~~r~~~~~~ 177 (317)
+|||+||... ....+++++||+++++|+.+++| |.+ |..|+++
T Consensus 87 ~iyv~GG~~~-------------------------------~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~-R~~~~~~ 134 (341)
T PLN02153 87 KLYIFGGRDE-------------------------------KREFSDFYSYDTVKNEWTFLTKLDEEGGPEA-RTFHSMA 134 (341)
T ss_pred EEEEECCCCC-------------------------------CCccCcEEEEECCCCEEEEeccCCCCCCCCC-ceeeEEE
Confidence 9999999753 22357899999999999999887 778 9999999
Q ss_pred EECCEEEEEecC-----------ceeEEEEeCCCCcEEeccCCc---c---CCcEEEEcCeEEEEeC-------------
Q 021080 178 VIGGKVHVLHKG-----------LSTVQVLDHMGLGWTVEDYGW---L---QGPMAIVHDSVYLMSH------------- 227 (317)
Q Consensus 178 ~~~g~lyv~gG~-----------~~~v~~yd~~~~~W~~~~~~~---~---~~~~~~~~~~ly~~g~------------- 227 (317)
+++++|||+||. .+++++||+.+++|+.++.+. . .+.+++++++||+++|
T Consensus 135 ~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~ 214 (341)
T PLN02153 135 SDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDY 214 (341)
T ss_pred EECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccce
Confidence 999999999992 247999999999999988653 1 4567889999999875
Q ss_pred --cEEEEecCCc--eEEEeccc-cccccccEEEEEECCeEEEEeCcccCC--CCceecccCcceeEeecCCCCCceeecc
Q 021080 228 --GLIIKQHRDV--RKVVASAS-EFRRRIGFAMIGMGDDIYVIGGVIGPD--RWNWDIKPMSDVDVLTVGAERPTWRQVS 300 (317)
Q Consensus 228 --~~~~~yd~~~--W~~v~~~~-~~~~r~~~~~~~~~~~lyv~GG~~~~~--~~~~~~~~~~~v~~yd~~~~~~~W~~~~ 300 (317)
+.++.||+++ |+++.... .+.+|..+++++++++|||+||..... .+.......+++++||++++ +|+.+.
T Consensus 215 ~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~--~W~~~~ 292 (341)
T PLN02153 215 ESNAVQFFDPASGKWTEVETTGAKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETL--VWEKLG 292 (341)
T ss_pred ecCceEEEEcCCCcEEeccccCCCCCCcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCcc--EEEecc
Confidence 3588999887 99997532 126788899999999999999974321 00001134679999999999 999885
Q ss_pred -----cCCCCCCceeeeeEe
Q 021080 301 -----PMTRCRGTILGCTQL 315 (317)
Q Consensus 301 -----~~p~~~~~~~~~~~~ 315 (317)
++|..+.. ++++.|
T Consensus 293 ~~~~~~~pr~~~~-~~~~~v 311 (341)
T PLN02153 293 ECGEPAMPRGWTA-YTTATV 311 (341)
T ss_pred CCCCCCCCCcccc-cccccc
Confidence 67777775 455554
No 5
>PHA02790 Kelch-like protein; Provisional
Probab=100.00 E-value=6e-33 Score=260.80 Aligned_cols=196 Identities=15% Similarity=0.196 Sum_probs=170.5
Q ss_pred cCceEEEEEeCC----CCceEEEeCCCCCEeecCCCCccccccCCeeEEEeCCEEEEEcCcCCCCCCCCCCCCCcccccc
Q 021080 54 SENLLCVCAFDP----ENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNE 129 (317)
Q Consensus 54 ~~~~l~v~gg~~----~~~~~~yd~~~~~W~~~~~~p~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~ 129 (317)
.++.||++||.. .+.+++|||.+++|..+++|+.+ |..+++++++++||++||...
T Consensus 270 ~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~---r~~~~~v~~~~~iYviGG~~~----------------- 329 (480)
T PHA02790 270 VGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSP---RLYASGVPANNKLYVVGGLPN----------------- 329 (480)
T ss_pred ECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCch---hhcceEEEECCEEEEECCcCC-----------------
Confidence 478899999842 46899999999999999999986 888999999999999999632
Q ss_pred eeEecccCCCCCCCcCCCceeEEeeCCCCceeeCCCCCccCCCceEEEEECCEEEEEec---CceeEEEEeCCCCcEEec
Q 021080 130 VWSYDPVTRGFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHNSACTGVVIGGKVHVLHK---GLSTVQVLDHMGLGWTVE 206 (317)
Q Consensus 130 ~~~~d~~~~G~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~r~~~~~~~~~g~lyv~gG---~~~~v~~yd~~~~~W~~~ 206 (317)
.+++++||+.+++|..+++||.+ |..+++++++|+||++|| ..+.+++|||.+++|+.+
T Consensus 330 -----------------~~sve~ydp~~n~W~~~~~l~~~-r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~ 391 (480)
T PHA02790 330 -----------------PTSVERWFHGDAAWVNMPSLLKP-RCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFG 391 (480)
T ss_pred -----------------CCceEEEECCCCeEEECCCCCCC-CcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeC
Confidence 25689999999999999999999 999999999999999999 336799999999999999
Q ss_pred cCCcc---CCcEEEEcCeEEEEeCcEEEEecCCc--eEEEeccccccccccEEEEEECCeEEEEeCcccCCCCceecccC
Q 021080 207 DYGWL---QGPMAIVHDSVYLMSHGLIIKQHRDV--RKVVASASEFRRRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPM 281 (317)
Q Consensus 207 ~~~~~---~~~~~~~~~~ly~~g~~~~~~yd~~~--W~~v~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~ 281 (317)
++++. .+.+++++|+||++||. +..||+++ |+.+++|+ .+|.++++++++|+||++||.+.. ...
T Consensus 392 ~~m~~~r~~~~~~~~~~~IYv~GG~-~e~ydp~~~~W~~~~~m~--~~r~~~~~~v~~~~IYviGG~~~~-------~~~ 461 (480)
T PHA02790 392 PSTYYPHYKSCALVFGRRLFLVGRN-AEFYCESSNTWTLIDDPI--YPRDNPELIIVDNKLLLIGGFYRG-------SYI 461 (480)
T ss_pred CCCCCccccceEEEECCEEEEECCc-eEEecCCCCcEeEcCCCC--CCccccEEEEECCEEEEECCcCCC-------ccc
Confidence 88764 55677899999999984 55677766 99999998 688999999999999999998643 245
Q ss_pred cceeEeecCCCCCceeec
Q 021080 282 SDVDVLTVGAERPTWRQV 299 (317)
Q Consensus 282 ~~v~~yd~~~~~~~W~~~ 299 (317)
+.+++||++++ +|+..
T Consensus 462 ~~ve~Yd~~~~--~W~~~ 477 (480)
T PHA02790 462 DTIEVYNNRTY--SWNIW 477 (480)
T ss_pred ceEEEEECCCC--eEEec
Confidence 78999999999 99764
No 6
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=100.00 E-value=2.2e-32 Score=247.91 Aligned_cols=232 Identities=13% Similarity=0.133 Sum_probs=175.5
Q ss_pred CcCceEEEEEeCCCCceEEEeC--CCCCEeecCCCCccccccCCeeEEEeCCEEEEEcCcCCCCCCCCCCCCCcccccce
Q 021080 53 SSENLLCVCAFDPENLWQLYDP--LRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEV 130 (317)
Q Consensus 53 ~~~~~l~v~gg~~~~~~~~yd~--~~~~W~~~~~~p~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~ 130 (317)
..++.|||+||...++++.||+ .+++|.++++||.. +|..+++++++++|||+||......
T Consensus 15 ~~~~~vyv~GG~~~~~~~~~d~~~~~~~W~~l~~~p~~--~R~~~~~~~~~~~iYv~GG~~~~~~--------------- 77 (346)
T TIGR03547 15 IIGDKVYVGLGSAGTSWYKLDLKKPSKGWQKIADFPGG--PRNQAVAAAIDGKLYVFGGIGKANS--------------- 77 (346)
T ss_pred EECCEEEEEccccCCeeEEEECCCCCCCceECCCCCCC--CcccceEEEECCEEEEEeCCCCCCC---------------
Confidence 3588999999977788999996 67899999999842 3899999999999999999753100
Q ss_pred eEecccCCCCCCCcCCCceeEEeeCCCCceeeCC-CCCccCCCceEEE-EECCEEEEEecC-------------------
Q 021080 131 WSYDPVTRGFTSCRKSISQAEMYDPEKDVWVPIP-DLHRTHNSACTGV-VIGGKVHVLHKG------------------- 189 (317)
Q Consensus 131 ~~~d~~~~G~~~~~~~~~~~~~yd~~t~~W~~~~-~~p~~~r~~~~~~-~~~g~lyv~gG~------------------- 189 (317)
......++++++||+.+++|+.++ ++|.+ +..++++ +++++||++||.
T Consensus 78 ----------~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~-~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~ 146 (346)
T TIGR03547 78 ----------EGSPQVFDDVYRYDPKKNSWQKLDTRSPVG-LLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDS 146 (346)
T ss_pred ----------CCcceecccEEEEECCCCEEecCCCCCCCc-ccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccc
Confidence 000124678999999999999997 56777 7777666 799999999992
Q ss_pred --------------------ceeEEEEeCCCCcEEeccCCcc----CCcEEEEcCeEEEEeCc--------EEEEe--cC
Q 021080 190 --------------------LSTVQVLDHMGLGWTVEDYGWL----QGPMAIVHDSVYLMSHG--------LIIKQ--HR 235 (317)
Q Consensus 190 --------------------~~~v~~yd~~~~~W~~~~~~~~----~~~~~~~~~~ly~~g~~--------~~~~y--d~ 235 (317)
.+.+++||+.+++|+.+++++. .+.+++++++||++||. .++.| ++
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~ 226 (346)
T TIGR03547 147 EPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTG 226 (346)
T ss_pred hhhhhhHHHHhCCChhHcCccceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeeeeCCCccchheEEEEecC
Confidence 1679999999999999988763 45567789999999982 24444 45
Q ss_pred Cc--eEEEecccccc-----ccccEEEEEECCeEEEEeCcccCCCC------ce--e--cccCcceeEeecCCCCCceee
Q 021080 236 DV--RKVVASASEFR-----RRIGFAMIGMGDDIYVIGGVIGPDRW------NW--D--IKPMSDVDVLTVGAERPTWRQ 298 (317)
Q Consensus 236 ~~--W~~v~~~~~~~-----~r~~~~~~~~~~~lyv~GG~~~~~~~------~~--~--~~~~~~v~~yd~~~~~~~W~~ 298 (317)
++ |++++.||.+. .+.++.+++++++||++||.+..+.. .. + ......+++||++++ +|+.
T Consensus 227 ~~~~W~~~~~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~--~W~~ 304 (346)
T TIGR03547 227 GKLEWNKLPPLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNG--KWSK 304 (346)
T ss_pred CCceeeecCCCCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCC--cccc
Confidence 53 99999998431 12355577899999999998643210 00 0 011246899999999 9999
Q ss_pred cccCCCCCCceeeeeEe
Q 021080 299 VSPMTRCRGTILGCTQL 315 (317)
Q Consensus 299 ~~~~p~~~~~~~~~~~~ 315 (317)
+++||.+|.. ++++++
T Consensus 305 ~~~lp~~~~~-~~~~~~ 320 (346)
T TIGR03547 305 VGKLPQGLAY-GVSVSW 320 (346)
T ss_pred cCCCCCCcee-eEEEEc
Confidence 9999999986 455544
No 7
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=2.1e-32 Score=261.77 Aligned_cols=210 Identities=18% Similarity=0.235 Sum_probs=182.9
Q ss_pred CcCceEEEEEeCC-----CCceEEEeCCCCCEeecCCCCccccccCCeeEEEeCCEEEEEcCcCCCCCCCCCCCCCcccc
Q 021080 53 SSENLLCVCAFDP-----ENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFAT 127 (317)
Q Consensus 53 ~~~~~l~v~gg~~-----~~~~~~yd~~~~~W~~~~~~p~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~ 127 (317)
..++.+|++||.. .++++.||+.+++|..+++||.+ |..+++++++++||++||...
T Consensus 292 ~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~---R~~~~~~~~~~~lyv~GG~~~--------------- 353 (534)
T PHA03098 292 VLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYP---RKNPGVTVFNNRIYVIGGIYN--------------- 353 (534)
T ss_pred EECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcc---cccceEEEECCEEEEEeCCCC---------------
Confidence 3588999999842 45899999999999999999975 999999999999999999752
Q ss_pred cceeEecccCCCCCCCcCCCceeEEeeCCCCceeeCCCCCccCCCceEEEEECCEEEEEec------CceeEEEEeCCCC
Q 021080 128 NEVWSYDPVTRGFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHNSACTGVVIGGKVHVLHK------GLSTVQVLDHMGL 201 (317)
Q Consensus 128 ~~~~~~d~~~~G~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~r~~~~~~~~~g~lyv~gG------~~~~v~~yd~~~~ 201 (317)
....+++++||+.+++|+.+++||.+ |..+++++++|+||++|| ..+.+++||+.++
T Consensus 354 ----------------~~~~~~v~~yd~~~~~W~~~~~lp~~-r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~ 416 (534)
T PHA03098 354 ----------------SISLNTVESWKPGESKWREEPPLIFP-RYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTN 416 (534)
T ss_pred ----------------CEecceEEEEcCCCCceeeCCCcCcC-CccceEEEECCEEEEECCcCCCCcccceEEEEeCCCC
Confidence 22467899999999999999999999 999999999999999999 2368999999999
Q ss_pred cEEeccCCcc---CCcEEEEcCeEEEEeCc----------EEEEecCCc--eEEEeccccccccccEEEEEECCeEEEEe
Q 021080 202 GWTVEDYGWL---QGPMAIVHDSVYLMSHG----------LIIKQHRDV--RKVVASASEFRRRIGFAMIGMGDDIYVIG 266 (317)
Q Consensus 202 ~W~~~~~~~~---~~~~~~~~~~ly~~g~~----------~~~~yd~~~--W~~v~~~~~~~~r~~~~~~~~~~~lyv~G 266 (317)
+|+.+++++. .+.+++.+++||++||. .++.||+++ |+.++.++ .+|.+++++.++++||++|
T Consensus 417 ~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~--~~r~~~~~~~~~~~iyv~G 494 (534)
T PHA03098 417 KWSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLN--FPRINASLCIFNNKIYVVG 494 (534)
T ss_pred eeeecCCCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCC--cccccceEEEECCEEEEEc
Confidence 9999987765 56677889999999982 389999887 99999888 5788888899999999999
Q ss_pred CcccCCCCceecccCcceeEeecCCCCCceeecccCCCCCCc
Q 021080 267 GVIGPDRWNWDIKPMSDVDVLTVGAERPTWRQVSPMTRCRGT 308 (317)
Q Consensus 267 G~~~~~~~~~~~~~~~~v~~yd~~~~~~~W~~~~~~p~~~~~ 308 (317)
|..... ..+++++||++++ +|+.++++|.....
T Consensus 495 G~~~~~-------~~~~v~~yd~~~~--~W~~~~~~p~~~~~ 527 (534)
T PHA03098 495 GDKYEY-------YINEIEVYDDKTN--TWTLFCKFPKVIGS 527 (534)
T ss_pred CCcCCc-------ccceeEEEeCCCC--EEEecCCCcccccc
Confidence 987552 4678999999999 99999988887665
No 8
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=3e-32 Score=255.48 Aligned_cols=242 Identities=16% Similarity=0.174 Sum_probs=189.2
Q ss_pred HhHHHhhcChhhHHHHHhcCC--cCceEEEEEeCC------CCceEEEeCCCCCEeecCCCCcccc-ccCCeeEEEeCCE
Q 021080 33 RSWRAAIRSPELFKARQEVGS--SENLLCVCAFDP------ENLWQLYDPLRDLWITLPVLPSKIR-HLAHFGVVSTAGK 103 (317)
Q Consensus 33 k~w~~l~~s~~~~~~~~~~~~--~~~~l~v~gg~~------~~~~~~yd~~~~~W~~~~~~p~~~~-~r~~~~~~~~~~~ 103 (317)
.+|..+....+.+.+|..|+. .++.|||+||.. .+++++||+.+++|..++.+...|. .|.++++++++++
T Consensus 151 ~~W~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~ 230 (470)
T PLN02193 151 GKWIKVEQKGEGPGLRCSHGIAQVGNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGST 230 (470)
T ss_pred ceEEEcccCCCCCCCccccEEEEECCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCE
Confidence 578877554445566666654 488999999952 2579999999999998765432221 3578899999999
Q ss_pred EEEEcCcCCCCCCCCCCCCCcccccceeEecccCCCCCCCcCCCceeEEeeCCCCceeeCCCC---CccCCCceEEEEEC
Q 021080 104 LFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRGFTSCRKSISQAEMYDPEKDVWVPIPDL---HRTHNSACTGVVIG 180 (317)
Q Consensus 104 iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~G~~~~~~~~~~~~~yd~~t~~W~~~~~~---p~~~r~~~~~~~~~ 180 (317)
|||+||... ....+++++||+.+++|+.++++ |.+ |..|++++++
T Consensus 231 lYvfGG~~~-------------------------------~~~~ndv~~yD~~t~~W~~l~~~~~~P~~-R~~h~~~~~~ 278 (470)
T PLN02193 231 LYVFGGRDA-------------------------------SRQYNGFYSFDTTTNEWKLLTPVEEGPTP-RSFHSMAADE 278 (470)
T ss_pred EEEECCCCC-------------------------------CCCCccEEEEECCCCEEEEcCcCCCCCCC-ccceEEEEEC
Confidence 999999753 22467899999999999999888 788 9999999999
Q ss_pred CEEEEEec-----CceeEEEEeCCCCcEEeccCC---cc---CCcEEEEcCeEEEEeC------cEEEEecCCc--eEEE
Q 021080 181 GKVHVLHK-----GLSTVQVLDHMGLGWTVEDYG---WL---QGPMAIVHDSVYLMSH------GLIIKQHRDV--RKVV 241 (317)
Q Consensus 181 g~lyv~gG-----~~~~v~~yd~~~~~W~~~~~~---~~---~~~~~~~~~~ly~~g~------~~~~~yd~~~--W~~v 241 (317)
++||++|| ..+.+++||+.+++|+.++.. +. .+.+++++++||+++| +.++.||+++ |+++
T Consensus 279 ~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~ 358 (470)
T PLN02193 279 ENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQV 358 (470)
T ss_pred CEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCCccCceEEEECCCCEEEEe
Confidence 99999999 356799999999999988642 11 4567788999999987 5799999887 9999
Q ss_pred eccc-cccccccEEEEEECCeEEEEeCcccCCC--CceecccCcceeEeecCCCCCceeecccC------CCCCCc
Q 021080 242 ASAS-EFRRRIGFAMIGMGDDIYVIGGVIGPDR--WNWDIKPMSDVDVLTVGAERPTWRQVSPM------TRCRGT 308 (317)
Q Consensus 242 ~~~~-~~~~r~~~~~~~~~~~lyv~GG~~~~~~--~~~~~~~~~~v~~yd~~~~~~~W~~~~~~------p~~~~~ 308 (317)
..+. .+.+|..+++++++++|||+||....+. ........+++++||+.++ +|+.+..+ |.+|..
T Consensus 359 ~~~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~--~W~~~~~~~~~~~~P~~R~~ 432 (470)
T PLN02193 359 ETFGVRPSERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETL--QWERLDKFGEEEETPSSRGW 432 (470)
T ss_pred ccCCCCCCCcceeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcCcC--EEEEcccCCCCCCCCCCCcc
Confidence 8662 2368889999999999999999864221 0001135678999999999 99998643 677765
No 9
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=100.00 E-value=7.4e-31 Score=240.02 Aligned_cols=232 Identities=14% Similarity=0.166 Sum_probs=173.3
Q ss_pred CcCceEEEEEeCCCCceEEEeCC--CCCEeecCCCCccccccCCeeEEEeCCEEEEEcCcCCCCCCCCCCCCCcccccce
Q 021080 53 SSENLLCVCAFDPENLWQLYDPL--RDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEV 130 (317)
Q Consensus 53 ~~~~~l~v~gg~~~~~~~~yd~~--~~~W~~~~~~p~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~ 130 (317)
..++.|||+||...+.++.||.. +++|..++++|.. +|.++++++++++|||+||...... .
T Consensus 36 ~~~~~iyv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~~--~r~~~~~v~~~~~IYV~GG~~~~~~------------~-- 99 (376)
T PRK14131 36 IDNNTVYVGLGSAGTSWYKLDLNAPSKGWTKIAAFPGG--PREQAVAAFIDGKLYVFGGIGKTNS------------E-- 99 (376)
T ss_pred EECCEEEEEeCCCCCeEEEEECCCCCCCeEECCcCCCC--CcccceEEEECCEEEEEcCCCCCCC------------C--
Confidence 35889999999766778999986 4789999998853 4899999999999999999753100 0
Q ss_pred eEecccCCCCCCCcCCCceeEEeeCCCCceeeCCC-CCccCCCceEEEE-ECCEEEEEecC-------------------
Q 021080 131 WSYDPVTRGFTSCRKSISQAEMYDPEKDVWVPIPD-LHRTHNSACTGVV-IGGKVHVLHKG------------------- 189 (317)
Q Consensus 131 ~~~d~~~~G~~~~~~~~~~~~~yd~~t~~W~~~~~-~p~~~r~~~~~~~-~~g~lyv~gG~------------------- 189 (317)
......+++++||+.+++|+.+++ +|.+ +..|++++ ++++||++||.
T Consensus 100 -----------~~~~~~~~v~~YD~~~n~W~~~~~~~p~~-~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~ 167 (376)
T PRK14131 100 -----------GSPQVFDDVYKYDPKTNSWQKLDTRSPVG-LAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDK 167 (376)
T ss_pred -----------CceeEcccEEEEeCCCCEEEeCCCCCCCc-ccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccch
Confidence 001235789999999999999985 4666 77777666 89999999992
Q ss_pred --------------------ceeEEEEeCCCCcEEeccCCcc----CCcEEEEcCeEEEEeCc--------EEE--EecC
Q 021080 190 --------------------LSTVQVLDHMGLGWTVEDYGWL----QGPMAIVHDSVYLMSHG--------LII--KQHR 235 (317)
Q Consensus 190 --------------------~~~v~~yd~~~~~W~~~~~~~~----~~~~~~~~~~ly~~g~~--------~~~--~yd~ 235 (317)
.+.+++||+.+++|+.+++++. .+++++++++||++||. .++ .||+
T Consensus 168 ~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~ 247 (376)
T PRK14131 168 TPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGESPFLGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTG 247 (376)
T ss_pred hhhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeECCcCCCCCCCcceEEEECCEEEEEeeeECCCcCChhheEEEecC
Confidence 2579999999999999987764 45667789999999982 233 4566
Q ss_pred Cc--eEEEecccccc------ccccEEEEEECCeEEEEeCcccCCCC------c-ee---cccCcceeEeecCCCCCcee
Q 021080 236 DV--RKVVASASEFR------RRIGFAMIGMGDDIYVIGGVIGPDRW------N-WD---IKPMSDVDVLTVGAERPTWR 297 (317)
Q Consensus 236 ~~--W~~v~~~~~~~------~r~~~~~~~~~~~lyv~GG~~~~~~~------~-~~---~~~~~~v~~yd~~~~~~~W~ 297 (317)
++ |+++..||.+. .+.++.+++++++||++||....... . .. ......+++||++++ +|+
T Consensus 248 ~~~~W~~~~~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~--~W~ 325 (376)
T PRK14131 248 NNLKWQKLPDLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNG--KWQ 325 (376)
T ss_pred CCcceeecCCCCCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCC--ccc
Confidence 54 99999998421 11223356789999999997643210 0 00 001235789999999 999
Q ss_pred ecccCCCCCCceeeeeEe
Q 021080 298 QVSPMTRCRGTILGCTQL 315 (317)
Q Consensus 298 ~~~~~p~~~~~~~~~~~~ 315 (317)
.+++||.+|.. ++++++
T Consensus 326 ~~~~lp~~r~~-~~av~~ 342 (376)
T PRK14131 326 KVGELPQGLAY-GVSVSW 342 (376)
T ss_pred ccCcCCCCccc-eEEEEe
Confidence 99999999988 566655
No 10
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=99.98 E-value=1.2e-30 Score=234.30 Aligned_cols=225 Identities=12% Similarity=0.005 Sum_probs=171.8
Q ss_pred CcCceEEEEEeCCC--------------CceEEEe-CCC-CCEeecCCCCccccccCCeeEEEeCCEEEEEcCcCCCCCC
Q 021080 53 SSENLLCVCAFDPE--------------NLWQLYD-PLR-DLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDP 116 (317)
Q Consensus 53 ~~~~~l~v~gg~~~--------------~~~~~yd-~~~-~~W~~~~~~p~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~ 116 (317)
..++.|||+||... ++++.|+ +.. .+|..+++||.+ |..+++++++++||++||...
T Consensus 11 ~~~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~~~lp~~---r~~~~~~~~~~~lyviGG~~~---- 83 (323)
T TIGR03548 11 IIGDYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKDGQLPYE---AAYGASVSVENGIYYIGGSNS---- 83 (323)
T ss_pred EECCEEEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEcccCCcc---ccceEEEEECCEEEEEcCCCC----
Confidence 35889999999531 3677775 332 379999999976 887888899999999999753
Q ss_pred CCCCCCCcccccceeEecccCCCCCCCcCCCceeEEeeCCCCce----eeCCCCCccCCCceEEEEECCEEEEEec----
Q 021080 117 LTGDQDGSFATNEVWSYDPVTRGFTSCRKSISQAEMYDPEKDVW----VPIPDLHRTHNSACTGVVIGGKVHVLHK---- 188 (317)
Q Consensus 117 ~~~~~~~~~~~~~~~~~d~~~~G~~~~~~~~~~~~~yd~~t~~W----~~~~~~p~~~r~~~~~~~~~g~lyv~gG---- 188 (317)
....+++++||+.+++| +.+++||.+ |..+++++++++||++||
T Consensus 84 ---------------------------~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~-~~~~~~~~~~~~iYv~GG~~~~ 135 (323)
T TIGR03548 84 ---------------------------SERFSSVYRITLDESKEELICETIGNLPFT-FENGSACYKDGTLYVGGGNRNG 135 (323)
T ss_pred ---------------------------CCCceeEEEEEEcCCceeeeeeEcCCCCcC-ccCceEEEECCEEEEEeCcCCC
Confidence 22357889999999987 788999999 889999999999999999
Q ss_pred -CceeEEEEeCCCCcEEeccCCcc----CCcEEEEcCeEEEEeC------cEEEEecCCc--eEEEecccc---cccccc
Q 021080 189 -GLSTVQVLDHMGLGWTVEDYGWL----QGPMAIVHDSVYLMSH------GLIIKQHRDV--RKVVASASE---FRRRIG 252 (317)
Q Consensus 189 -~~~~v~~yd~~~~~W~~~~~~~~----~~~~~~~~~~ly~~g~------~~~~~yd~~~--W~~v~~~~~---~~~r~~ 252 (317)
..+.+++||+.+++|+.+++++. .+.+++++++||++|| .+++.||+++ |+.++.++. +..+..
T Consensus 136 ~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~ 215 (323)
T TIGR03548 136 KPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDSEPISLLG 215 (323)
T ss_pred ccCceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeEECCCCCCCCCceeccc
Confidence 35789999999999999987652 4455678999999998 2578999887 999987642 223333
Q ss_pred -EEEEEECCeEEEEeCcccCCCC-------------------------ceecccCcceeEeecCCCCCceeecccCC-CC
Q 021080 253 -FAMIGMGDDIYVIGGVIGPDRW-------------------------NWDIKPMSDVDVLTVGAERPTWRQVSPMT-RC 305 (317)
Q Consensus 253 -~~~~~~~~~lyv~GG~~~~~~~-------------------------~~~~~~~~~v~~yd~~~~~~~W~~~~~~p-~~ 305 (317)
.+++..+++||++||.+..... ..+....+++++||++++ +|+.++++| .+
T Consensus 216 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~--~W~~~~~~p~~~ 293 (323)
T TIGR03548 216 AASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTG--KWKSIGNSPFFA 293 (323)
T ss_pred eeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCC--eeeEcccccccc
Confidence 3345557999999998642100 000012467999999999 999999988 57
Q ss_pred CCceeeeeEe
Q 021080 306 RGTILGCTQL 315 (317)
Q Consensus 306 ~~~~~~~~~~ 315 (317)
|.. ++++++
T Consensus 294 r~~-~~~~~~ 302 (323)
T TIGR03548 294 RCG-AALLLT 302 (323)
T ss_pred cCc-hheEEE
Confidence 776 455554
No 11
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.97 E-value=6.1e-30 Score=243.16 Aligned_cols=195 Identities=26% Similarity=0.441 Sum_probs=173.0
Q ss_pred EeCCEEEEEcCcCCCCCCCCCCCCCcccccceeEecccCC---------------------------CCCC-CcCCCcee
Q 021080 99 STAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTR---------------------------GFTS-CRKSISQA 150 (317)
Q Consensus 99 ~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---------------------------G~~~-~~~~~~~~ 150 (317)
...+.||++||..... ...+.+.+||+.++ |..+ ....++++
T Consensus 282 ~~~~~l~~vGG~~~~~----------~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~v 351 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQG----------QSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSV 351 (571)
T ss_pred CCCCeEEEECCCCCCC----------cccceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccceE
Confidence 5678899999987422 26788999999988 4433 46678999
Q ss_pred EEeeCCCCceeeCCCCCccCCCceEEEEECCEEEEEec-----CceeEEEEeCCCCcEEeccCCcc---CCcEEEEcCeE
Q 021080 151 EMYDPEKDVWVPIPDLHRTHNSACTGVVIGGKVHVLHK-----GLSTVQVLDHMGLGWTVEDYGWL---QGPMAIVHDSV 222 (317)
Q Consensus 151 ~~yd~~t~~W~~~~~~p~~~r~~~~~~~~~g~lyv~gG-----~~~~v~~yd~~~~~W~~~~~~~~---~~~~~~~~~~l 222 (317)
|+||+.+|+|..+++|+.+ |..+++++++|+||++|| ..+++|+||+.+++|+.+++|.. .+.+++++++|
T Consensus 352 e~YD~~~~~W~~~a~M~~~-R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~i 430 (571)
T KOG4441|consen 352 ERYDPRTNQWTPVAPMNTK-RSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKL 430 (571)
T ss_pred EEecCCCCceeccCCccCc-cccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEE
Confidence 9999999999999999999 999999999999999999 56789999999999999998876 77888999999
Q ss_pred EEEeC--------cEEEEecCCc--eEEEeccccccccccEEEEEECCeEEEEeCcccCCCCceecccCcceeEeecCCC
Q 021080 223 YLMSH--------GLIIKQHRDV--RKVVASASEFRRRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAE 292 (317)
Q Consensus 223 y~~g~--------~~~~~yd~~~--W~~v~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~ 292 (317)
|++|| +.+..|||.+ |+.+++|+ .+|.++++++++++||++||+++. .....|+.||++++
T Consensus 431 Yi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~--~~R~~~g~a~~~~~iYvvGG~~~~-------~~~~~VE~ydp~~~ 501 (571)
T KOG4441|consen 431 YIIGGGDGSSNCLNSVECYDPETNTWTLIAPMN--TRRSGFGVAVLNGKIYVVGGFDGT-------SALSSVERYDPETN 501 (571)
T ss_pred EEEcCcCCCccccceEEEEcCCCCceeecCCcc--cccccceEEEECCEEEEECCccCC-------CccceEEEEcCCCC
Confidence 99998 5788999988 99999999 799999999999999999999984 35667999999999
Q ss_pred CCceeecccCCCCCCceeeeeEee
Q 021080 293 RPTWRQVSPMTRCRGTILGCTQLR 316 (317)
Q Consensus 293 ~~~W~~~~~~p~~~~~~~~~~~~~ 316 (317)
+|+.+++|+.+|+. .++++++
T Consensus 502 --~W~~v~~m~~~rs~-~g~~~~~ 522 (571)
T KOG4441|consen 502 --QWTMVAPMTSPRSA-VGVVVLG 522 (571)
T ss_pred --ceeEcccCcccccc-ccEEEEC
Confidence 99999999999998 6887764
No 12
>PLN02193 nitrile-specifier protein
Probab=99.97 E-value=3.1e-28 Score=228.32 Aligned_cols=222 Identities=15% Similarity=0.154 Sum_probs=170.7
Q ss_pred CceEEEEEeCC---CC--ceEEEeCCC----CCEeecCCCCccccccCCeeEEEeCCEEEEEcCcCCCCCCCCCCCCCcc
Q 021080 55 ENLLCVCAFDP---EN--LWQLYDPLR----DLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSF 125 (317)
Q Consensus 55 ~~~l~v~gg~~---~~--~~~~yd~~~----~~W~~~~~~p~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ 125 (317)
+..|+.|.|.. .. .++.+|+.+ ++|..+.++...|.+|..|++++++++|||+||.....
T Consensus 120 ~~~ivgf~G~~~~~~~~ig~y~~~~~~~~~~~~W~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~----------- 188 (470)
T PLN02193 120 GGKIVGFHGRSTDVLHSLGAYISLPSTPKLLGKWIKVEQKGEGPGLRCSHGIAQVGNKIYSFGGEFTPN----------- 188 (470)
T ss_pred CCeEEEEeccCCCcEEeeEEEEecCCChhhhceEEEcccCCCCCCCccccEEEEECCEEEEECCcCCCC-----------
Confidence 55666666632 22 345557655 89999887543334599999999999999999974310
Q ss_pred cccceeEecccCCCCCCCcCCCceeEEeeCCCCceeeCCCC---CccCCCceEEEEECCEEEEEec-----CceeEEEEe
Q 021080 126 ATNEVWSYDPVTRGFTSCRKSISQAEMYDPEKDVWVPIPDL---HRTHNSACTGVVIGGKVHVLHK-----GLSTVQVLD 197 (317)
Q Consensus 126 ~~~~~~~~d~~~~G~~~~~~~~~~~~~yd~~t~~W~~~~~~---p~~~r~~~~~~~~~g~lyv~gG-----~~~~v~~yd 197 (317)
....+++++||+++++|+.++++ |...+..+++++++++||++|| ..+.+++||
T Consensus 189 ------------------~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD 250 (470)
T PLN02193 189 ------------------QPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFD 250 (470)
T ss_pred ------------------CCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEE
Confidence 11236799999999999988653 4321457788999999999999 357899999
Q ss_pred CCCCcEEeccCC---cc---CCcEEEEcCeEEEEeC-------cEEEEecCCc--eEEEeccc-cccccccEEEEEECCe
Q 021080 198 HMGLGWTVEDYG---WL---QGPMAIVHDSVYLMSH-------GLIIKQHRDV--RKVVASAS-EFRRRIGFAMIGMGDD 261 (317)
Q Consensus 198 ~~~~~W~~~~~~---~~---~~~~~~~~~~ly~~g~-------~~~~~yd~~~--W~~v~~~~-~~~~r~~~~~~~~~~~ 261 (317)
+.+++|+.++++ +. .+.+++.+++||++|| +.++.||+++ |+.++... .+..|.++++++++++
T Consensus 251 ~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gk 330 (470)
T PLN02193 251 TTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGK 330 (470)
T ss_pred CCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCc
Confidence 999999998765 22 5667788999999998 4688999877 99987521 1257888999999999
Q ss_pred EEEEeCcccCCCCceecccCcceeEeecCCCCCceeecccC---CCCCCceeeeeEee
Q 021080 262 IYVIGGVIGPDRWNWDIKPMSDVDVLTVGAERPTWRQVSPM---TRCRGTILGCTQLR 316 (317)
Q Consensus 262 lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~~~~W~~~~~~---p~~~~~~~~~~~~~ 316 (317)
||++||.+.. ..+++++||++++ +|+.++++ |.+|.. +++++++
T Consensus 331 iyviGG~~g~--------~~~dv~~yD~~t~--~W~~~~~~g~~P~~R~~-~~~~~~~ 377 (470)
T PLN02193 331 VWVVYGFNGC--------EVDDVHYYDPVQD--KWTQVETFGVRPSERSV-FASAAVG 377 (470)
T ss_pred EEEEECCCCC--------ccCceEEEECCCC--EEEEeccCCCCCCCcce-eEEEEEC
Confidence 9999997533 3579999999999 99999765 889987 6777653
No 13
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=99.97 E-value=4.3e-29 Score=205.75 Aligned_cols=223 Identities=14% Similarity=0.177 Sum_probs=183.1
Q ss_pred cCceEEEEEeC---------CCCceEEEeCCCCCEeecCC----------CCccccccCCeeEEEeCCEEEEEcCcCCCC
Q 021080 54 SENLLCVCAFD---------PENLWQLYDPLRDLWITLPV----------LPSKIRHLAHFGVVSTAGKLFVLGGGSDAV 114 (317)
Q Consensus 54 ~~~~l~v~gg~---------~~~~~~~yd~~~~~W~~~~~----------~p~~~~~r~~~~~~~~~~~iyv~GG~~~~~ 114 (317)
.+..+|-|||- ...+++.+|..+-+|.++++ -|.-|.-|++|+++.+++++||.||.++..
T Consensus 22 VG~riYSFGGYCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d~~yvWGGRND~e 101 (392)
T KOG4693|consen 22 VGSRIYSFGGYCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQDKAYVWGGRNDDE 101 (392)
T ss_pred ecceEEecCCcccccccccCCcceeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEcceEEEEcCccCcc
Confidence 48899999992 25789999999999999875 122244599999999999999999987632
Q ss_pred CCCCCCCCCcccccceeEecccCCCCCCCcCCCceeEEeeCCCCceeeC---CCCCccCCCceEEEEECCEEEEEec---
Q 021080 115 DPLTGDQDGSFATNEVWSYDPVTRGFTSCRKSISQAEMYDPEKDVWVPI---PDLHRTHNSACTGVVIGGKVHVLHK--- 188 (317)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~d~~~~G~~~~~~~~~~~~~yd~~t~~W~~~---~~~p~~~r~~~~~~~~~g~lyv~gG--- 188 (317)
..-+..+.||+++++|.+. +-.|.+ |.+|++++.++.+|++||
T Consensus 102 ------------------------------gaCN~Ly~fDp~t~~W~~p~v~G~vPga-RDGHsAcV~gn~MyiFGGye~ 150 (392)
T KOG4693|consen 102 ------------------------------GACNLLYEFDPETNVWKKPEVEGFVPGA-RDGHSACVWGNQMYIFGGYEE 150 (392)
T ss_pred ------------------------------cccceeeeeccccccccccceeeecCCc-cCCceeeEECcEEEEecChHH
Confidence 2347788899999999876 457888 999999999999999999
Q ss_pred ----CceeEEEEeCCCCcEEeccCCcc------CCcEEEEcCeEEEEeC----------------cEEEEecCCc--eEE
Q 021080 189 ----GLSTVQVLDHMGLGWTVEDYGWL------QGPMAIVHDSVYLMSH----------------GLIIKQHRDV--RKV 240 (317)
Q Consensus 189 ----~~~~v~~yd~~~~~W~~~~~~~~------~~~~~~~~~~ly~~g~----------------~~~~~yd~~~--W~~ 240 (317)
.++++.++|+.+.+|+.+...-. .++++++++.+|++|| ..+..+|..+ |..
T Consensus 151 ~a~~FS~d~h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r 230 (392)
T KOG4693|consen 151 DAQRFSQDTHVLDFATMTWREMHTKGDPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTR 230 (392)
T ss_pred HHHhhhccceeEeccceeeeehhccCCCchhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEecccccccc
Confidence 56889999999999998864321 6888899999999998 3677888777 988
Q ss_pred Eecccc-ccccccEEEEEECCeEEEEeCcccCCCCceecccCcceeEeecCCCCCceeeccc---CCCCCCceeeeeEe
Q 021080 241 VASASE-FRRRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAERPTWRQVSP---MTRCRGTILGCTQL 315 (317)
Q Consensus 241 v~~~~~-~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~~~~W~~~~~---~p~~~~~~~~~~~~ 315 (317)
-+.-+. +.+|.+|++.++++++|+|||++..-. ...++++.|||.+. .|+.+.+ -|.+|.. ++|+++
T Consensus 231 ~p~~~~~P~GRRSHS~fvYng~~Y~FGGYng~ln-----~HfndLy~FdP~t~--~W~~I~~~Gk~P~aRRR-qC~~v~ 301 (392)
T KOG4693|consen 231 TPENTMKPGGRRSHSTFVYNGKMYMFGGYNGTLN-----VHFNDLYCFDPKTS--MWSVISVRGKYPSARRR-QCSVVS 301 (392)
T ss_pred CCCCCcCCCcccccceEEEcceEEEecccchhhh-----hhhcceeecccccc--hheeeeccCCCCCcccc-eeEEEE
Confidence 765442 468888999999999999999987643 46789999999999 9999854 5999998 455543
No 14
>PHA03098 kelch-like protein; Provisional
Probab=99.97 E-value=1.2e-28 Score=235.89 Aligned_cols=216 Identities=16% Similarity=0.179 Sum_probs=176.3
Q ss_pred ceEEEEEeCC--CCceEEEeCCCCCEeecCCCCccccccCCeeEEEeCCEEEEEcCcCCCCCCCCCCCCCcccccceeEe
Q 021080 56 NLLCVCAFDP--ENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSY 133 (317)
Q Consensus 56 ~~l~v~gg~~--~~~~~~yd~~~~~W~~~~~~p~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~ 133 (317)
..+++.+|.. ...+.+|++..++|..+++.|. +..+++++++++||++||....
T Consensus 251 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~lyv~GG~~~~-------------------- 306 (534)
T PHA03098 251 SIIYIHITMSIFTYNYITNYSPLSEINTIIDIHY----VYCFGSVVLNNVIYFIGGMNKN-------------------- 306 (534)
T ss_pred cceEeecccchhhceeeecchhhhhcccccCccc----cccceEEEECCEEEEECCCcCC--------------------
Confidence 3455544422 3456789999999999877664 4557889999999999997532
Q ss_pred cccCCCCCCCcCCCceeEEeeCCCCceeeCCCCCccCCCceEEEEECCEEEEEec-----CceeEEEEeCCCCcEEeccC
Q 021080 134 DPVTRGFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHNSACTGVVIGGKVHVLHK-----GLSTVQVLDHMGLGWTVEDY 208 (317)
Q Consensus 134 d~~~~G~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~r~~~~~~~~~g~lyv~gG-----~~~~v~~yd~~~~~W~~~~~ 208 (317)
....+++++||+.+++|..+++||.+ |..+++++++++||++|| ..+.+++||+.+++|+..++
T Consensus 307 ----------~~~~~~v~~yd~~~~~W~~~~~~~~~-R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~ 375 (534)
T PHA03098 307 ----------NLSVNSVVSYDTKTKSWNKVPELIYP-RKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPP 375 (534)
T ss_pred ----------CCeeccEEEEeCCCCeeeECCCCCcc-cccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCC
Confidence 22346899999999999999999999 999999999999999999 34679999999999999987
Q ss_pred Ccc---CCcEEEEcCeEEEEeC--------cEEEEecCCc--eEEEeccccccccccEEEEEECCeEEEEeCcccCCCCc
Q 021080 209 GWL---QGPMAIVHDSVYLMSH--------GLIIKQHRDV--RKVVASASEFRRRIGFAMIGMGDDIYVIGGVIGPDRWN 275 (317)
Q Consensus 209 ~~~---~~~~~~~~~~ly~~g~--------~~~~~yd~~~--W~~v~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~ 275 (317)
++. .+.+++++|+||++|| +.++.||+++ |+.++++| .+|.+++++.++++||++||.......
T Consensus 376 lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p--~~r~~~~~~~~~~~iyv~GG~~~~~~~- 452 (534)
T PHA03098 376 LIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLP--ISHYGGCAIYHDGKIYVIGGISYIDNI- 452 (534)
T ss_pred cCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCC--ccccCceEEEECCEEEEECCccCCCCC-
Confidence 765 5677888999999998 4689999876 99999988 678888999999999999997654311
Q ss_pred eecccCcceeEeecCCCCCceeecccCCCCCCceeeeeEe
Q 021080 276 WDIKPMSDVDVLTVGAERPTWRQVSPMTRCRGTILGCTQL 315 (317)
Q Consensus 276 ~~~~~~~~v~~yd~~~~~~~W~~~~~~p~~~~~~~~~~~~ 315 (317)
...+.+++||++++ +|+.++++|.+|.. ++++++
T Consensus 453 ---~~~~~v~~yd~~~~--~W~~~~~~~~~r~~-~~~~~~ 486 (534)
T PHA03098 453 ---KVYNIVESYNPVTN--KWTELSSLNFPRIN-ASLCIF 486 (534)
T ss_pred ---cccceEEEecCCCC--ceeeCCCCCccccc-ceEEEE
Confidence 13457999999999 99999999999987 455544
No 15
>PLN02153 epithiospecifier protein
Probab=99.97 E-value=2.7e-28 Score=220.55 Aligned_cols=205 Identities=17% Similarity=0.217 Sum_probs=160.2
Q ss_pred CCCCCEeecCC----CCccccccCCeeEEEeCCEEEEEcCcCCCCCCCCCCCCCcccccceeEecccCCCCCCCcCCCce
Q 021080 74 PLRDLWITLPV----LPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRGFTSCRKSISQ 149 (317)
Q Consensus 74 ~~~~~W~~~~~----~p~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~G~~~~~~~~~~ 149 (317)
+.+++|.++.. +|. +|..|++++++++|||+||..... ....++
T Consensus 4 ~~~~~W~~~~~~~~~~P~---pR~~h~~~~~~~~iyv~GG~~~~~-----------------------------~~~~~~ 51 (341)
T PLN02153 4 TLQGGWIKVEQKGGKGPG---PRCSHGIAVVGDKLYSFGGELKPN-----------------------------EHIDKD 51 (341)
T ss_pred ccCCeEEEecCCCCCCCC---CCCcceEEEECCEEEEECCccCCC-----------------------------CceeCc
Confidence 46788999976 454 499999999999999999974310 123478
Q ss_pred eEEeeCCCCceeeCCCCC-cc--CCCceEEEEECCEEEEEec-----CceeEEEEeCCCCcEEeccCC-----cc---CC
Q 021080 150 AEMYDPEKDVWVPIPDLH-RT--HNSACTGVVIGGKVHVLHK-----GLSTVQVLDHMGLGWTVEDYG-----WL---QG 213 (317)
Q Consensus 150 ~~~yd~~t~~W~~~~~~p-~~--~r~~~~~~~~~g~lyv~gG-----~~~~v~~yd~~~~~W~~~~~~-----~~---~~ 213 (317)
+++||+.+++|+.+++++ .+ .+..+++++++++||++|| ..+.+++||+.+++|+.++++ +. .+
T Consensus 52 ~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~ 131 (341)
T PLN02153 52 LYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFH 131 (341)
T ss_pred EEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceee
Confidence 999999999999998764 34 1236788999999999999 346899999999999988764 22 56
Q ss_pred cEEEEcCeEEEEeCc-------------EEEEecCCc--eEEEecccc-ccccccEEEEEECCeEEEEeCcccC---CCC
Q 021080 214 PMAIVHDSVYLMSHG-------------LIIKQHRDV--RKVVASASE-FRRRIGFAMIGMGDDIYVIGGVIGP---DRW 274 (317)
Q Consensus 214 ~~~~~~~~ly~~g~~-------------~~~~yd~~~--W~~v~~~~~-~~~r~~~~~~~~~~~lyv~GG~~~~---~~~ 274 (317)
.+++.+++||++||. .++.||+++ |+.++.+.. +..|.++++++++++||++||.... ++.
T Consensus 132 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~ 211 (341)
T PLN02153 132 SMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGK 211 (341)
T ss_pred EEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCc
Confidence 778889999999981 478899887 999987642 3578888999999999999997532 110
Q ss_pred ceecccCcceeEeecCCCCCceeeccc---CCCCCCceeeeeEe
Q 021080 275 NWDIKPMSDVDVLTVGAERPTWRQVSP---MTRCRGTILGCTQL 315 (317)
Q Consensus 275 ~~~~~~~~~v~~yd~~~~~~~W~~~~~---~p~~~~~~~~~~~~ 315 (317)
. ....+++++||++++ +|+.+.+ +|.+|.. ++++++
T Consensus 212 ~--~~~~~~v~~yd~~~~--~W~~~~~~g~~P~~r~~-~~~~~~ 250 (341)
T PLN02153 212 S--DYESNAVQFFDPASG--KWTEVETTGAKPSARSV-FAHAVV 250 (341)
T ss_pred c--ceecCceEEEEcCCC--cEEeccccCCCCCCcce-eeeEEE
Confidence 0 013578999999999 9999864 6889987 677765
No 16
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=99.96 E-value=1.3e-28 Score=221.00 Aligned_cols=200 Identities=17% Similarity=0.164 Sum_probs=159.8
Q ss_pred hHHHhhcChhhHHHHHhcC--CcCceEEEEEeCC----CCceEEEeCCCCCE----eecCCCCccccccCCeeEEEeCCE
Q 021080 34 SWRAAIRSPELFKARQEVG--SSENLLCVCAFDP----ENLWQLYDPLRDLW----ITLPVLPSKIRHLAHFGVVSTAGK 103 (317)
Q Consensus 34 ~w~~l~~s~~~~~~~~~~~--~~~~~l~v~gg~~----~~~~~~yd~~~~~W----~~~~~~p~~~~~r~~~~~~~~~~~ 103 (317)
.|..+ ++++.+|..++ ..++.||++||.. .+++++||+.+++| ..++++|.+ |..+++++++++
T Consensus 52 ~W~~~---~~lp~~r~~~~~~~~~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~---~~~~~~~~~~~~ 125 (323)
T TIGR03548 52 KWVKD---GQLPYEAAYGASVSVENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFT---FENGSACYKDGT 125 (323)
T ss_pred eEEEc---ccCCccccceEEEEECCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcC---ccCceEEEECCE
Confidence 57766 34444554332 3488999999942 57899999999988 778888875 888999999999
Q ss_pred EEEEcCcCCCCCCCCCCCCCcccccceeEecccCCCCCCCcCCCceeEEeeCCCCceeeCCCCCc-cCCCceEEEEECCE
Q 021080 104 LFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRGFTSCRKSISQAEMYDPEKDVWVPIPDLHR-THNSACTGVVIGGK 182 (317)
Q Consensus 104 iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~G~~~~~~~~~~~~~yd~~t~~W~~~~~~p~-~~r~~~~~~~~~g~ 182 (317)
|||+||... ....+++++||+.+++|+.+++||. + |..+++++++++
T Consensus 126 iYv~GG~~~-------------------------------~~~~~~v~~yd~~~~~W~~~~~~p~~~-r~~~~~~~~~~~ 173 (323)
T TIGR03548 126 LYVGGGNRN-------------------------------GKPSNKSYLFNLETQEWFELPDFPGEP-RVQPVCVKLQNE 173 (323)
T ss_pred EEEEeCcCC-------------------------------CccCceEEEEcCCCCCeeECCCCCCCC-CCcceEEEECCE
Confidence 999999642 2235789999999999999999985 6 888888899999
Q ss_pred EEEEecC----ceeEEEEeCCCCcEEeccCCcc--------CCc-EEEEcCeEEEEeCc---------------------
Q 021080 183 VHVLHKG----LSTVQVLDHMGLGWTVEDYGWL--------QGP-MAIVHDSVYLMSHG--------------------- 228 (317)
Q Consensus 183 lyv~gG~----~~~v~~yd~~~~~W~~~~~~~~--------~~~-~~~~~~~ly~~g~~--------------------- 228 (317)
||++||. ..++++||+.+++|+.++++.. .+. ++..+++||++||.
T Consensus 174 iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~ 253 (323)
T TIGR03548 174 LYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLK 253 (323)
T ss_pred EEEEcCCCCccccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhh
Confidence 9999992 2468999999999999987531 122 23347899999982
Q ss_pred ------------------EEEEecCCc--eEEEeccccccccccEEEEEECCeEEEEeCcccCC
Q 021080 229 ------------------LIIKQHRDV--RKVVASASEFRRRIGFAMIGMGDDIYVIGGVIGPD 272 (317)
Q Consensus 229 ------------------~~~~yd~~~--W~~v~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~ 272 (317)
.++.||+++ |+.++.+|. ..|..+++++++++||++||....+
T Consensus 254 ~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~-~~r~~~~~~~~~~~iyv~GG~~~pg 316 (323)
T TIGR03548 254 GYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGNSPF-FARCGAALLLTGNNIFSINGELKPG 316 (323)
T ss_pred hhHHHHhCCCccccCcCceEEEEECCCCeeeEcccccc-cccCchheEEECCEEEEEeccccCC
Confidence 488999886 999998874 4788899999999999999987765
No 17
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.96 E-value=1.5e-28 Score=224.89 Aligned_cols=243 Identities=17% Similarity=0.159 Sum_probs=169.4
Q ss_pred CHhHHHhhcChhhHHHHHhc--CCcCceEEEEEeCC----------CCceEEEeCCCCCEeecCCC-CccccccCCeeEE
Q 021080 32 SRSWRAAIRSPELFKARQEV--GSSENLLCVCAFDP----------ENLWQLYDPLRDLWITLPVL-PSKIRHLAHFGVV 98 (317)
Q Consensus 32 ~k~w~~l~~s~~~~~~~~~~--~~~~~~l~v~gg~~----------~~~~~~yd~~~~~W~~~~~~-p~~~~~r~~~~~~ 98 (317)
.++|..+..-|.. +|..+ ...++.|||+||.. .+++++||+.+++|..++++ |. .+.+++++
T Consensus 61 ~~~W~~l~~~p~~--~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~---~~~~~~~~ 135 (376)
T PRK14131 61 SKGWTKIAAFPGG--PREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPV---GLAGHVAV 135 (376)
T ss_pred CCCeEECCcCCCC--CcccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCC---cccceEEE
Confidence 4689877433322 23333 34588999999943 36799999999999999753 43 36667766
Q ss_pred E-eCCEEEEEcCcCCCCCCCCCCCCCcccccceeEe-----------cccCCCCCCCcCCCceeEEeeCCCCceeeCCCC
Q 021080 99 S-TAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSY-----------DPVTRGFTSCRKSISQAEMYDPEKDVWVPIPDL 166 (317)
Q Consensus 99 ~-~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~-----------d~~~~G~~~~~~~~~~~~~yd~~t~~W~~~~~~ 166 (317)
+ .+++|||+||..... +.+ ...++... +.............+++++||+.+++|+.+++|
T Consensus 136 ~~~~~~IYv~GG~~~~~------~~~--~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~~ 207 (376)
T PRK14131 136 SLHNGKAYITGGVNKNI------FDG--YFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGES 207 (376)
T ss_pred EeeCCEEEEECCCCHHH------HHH--HHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeECCcC
Confidence 6 899999999975310 000 00000000 000000000011247899999999999999999
Q ss_pred Cc-cCCCceEEEEECCEEEEEecC------ceeE--EEEeCCCCcEEeccCCccC-----------CcEEEEcCeEEEEe
Q 021080 167 HR-THNSACTGVVIGGKVHVLHKG------LSTV--QVLDHMGLGWTVEDYGWLQ-----------GPMAIVHDSVYLMS 226 (317)
Q Consensus 167 p~-~~r~~~~~~~~~g~lyv~gG~------~~~v--~~yd~~~~~W~~~~~~~~~-----------~~~~~~~~~ly~~g 226 (317)
|. + +..++++.++++||++||. ...+ ..||+.+++|+.+++++.+ +.+++++++||++|
T Consensus 208 p~~~-~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~a~~~~~~iyv~G 286 (376)
T PRK14131 208 PFLG-TAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDLPPAPGGSSQEGVAGAFAGYSNGVLLVAG 286 (376)
T ss_pred CCCC-CCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCCCCCCcCCcCCccceEeceeECCEEEEee
Confidence 96 5 7788888999999999991 1223 3567899999999877541 11466899999999
Q ss_pred Cc------------------------EEEEecCCc--eEEEeccccccccccEEEEEECCeEEEEeCcccCCCCceeccc
Q 021080 227 HG------------------------LIIKQHRDV--RKVVASASEFRRRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKP 280 (317)
Q Consensus 227 ~~------------------------~~~~yd~~~--W~~v~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~ 280 (317)
|. .+..||++. |+.+..+| .+|..+++++++|+|||+||....+ ..
T Consensus 287 G~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp--~~r~~~~av~~~~~iyv~GG~~~~~------~~ 358 (376)
T PRK14131 287 GANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELP--QGLAYGVSVSWNNGVLLIGGETAGG------KA 358 (376)
T ss_pred ccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcCC--CCccceEEEEeCCEEEEEcCCCCCC------cE
Confidence 72 134688765 99999998 6788888999999999999976543 46
Q ss_pred CcceeEeecCCCCCceee
Q 021080 281 MSDVDVLTVGAERPTWRQ 298 (317)
Q Consensus 281 ~~~v~~yd~~~~~~~W~~ 298 (317)
.++|++|+++++ ++..
T Consensus 359 ~~~v~~~~~~~~--~~~~ 374 (376)
T PRK14131 359 VSDVTLLSWDGK--KLTV 374 (376)
T ss_pred eeeEEEEEEcCC--EEEE
Confidence 789999999988 7754
No 18
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=99.96 E-value=3.6e-28 Score=220.33 Aligned_cols=235 Identities=16% Similarity=0.123 Sum_probs=164.5
Q ss_pred cCHhHHHhhcChhhH-HHHHhcC--CcCceEEEEEeCC----------CCceEEEeCCCCCEeecC-CCCccccccCCee
Q 021080 31 VSRSWRAAIRSPELF-KARQEVG--SSENLLCVCAFDP----------ENLWQLYDPLRDLWITLP-VLPSKIRHLAHFG 96 (317)
Q Consensus 31 v~k~w~~l~~s~~~~-~~~~~~~--~~~~~l~v~gg~~----------~~~~~~yd~~~~~W~~~~-~~p~~~~~r~~~~ 96 (317)
..++|+.+. +++ .+|..++ ..++.|||+||.. .+++++||+.+++|..++ ++|.. +.+++
T Consensus 39 ~~~~W~~l~---~~p~~~R~~~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~---~~~~~ 112 (346)
T TIGR03547 39 PSKGWQKIA---DFPGGPRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVG---LLGAS 112 (346)
T ss_pred CCCCceECC---CCCCCCcccceEEEECCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCc---cccee
Confidence 467899874 343 2344333 4588999999942 367999999999999986 34443 66666
Q ss_pred EE-EeCCEEEEEcCcCCCCCCCCCCCCCcccccceeEecccCC----------CC-CCCcCCCceeEEeeCCCCceeeCC
Q 021080 97 VV-STAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTR----------GF-TSCRKSISQAEMYDPEKDVWVPIP 164 (317)
Q Consensus 97 ~~-~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----------G~-~~~~~~~~~~~~yd~~t~~W~~~~ 164 (317)
++ +++++||++||.+.... + ....++..+|+... +. .......+++++||+.+++|+.++
T Consensus 113 ~~~~~~g~IYviGG~~~~~~------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~ 184 (346)
T TIGR03547 113 GFSLHNGQAYFTGGVNKNIF------D--GYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLG 184 (346)
T ss_pred EEEEeCCEEEEEcCcChHHH------H--HHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECCCCceeECc
Confidence 65 78999999999753100 0 01112222222110 00 000012478999999999999999
Q ss_pred CCCc-cCCCceEEEEECCEEEEEecC------ceeEEEEe--CCCCcEEeccCCccC----------CcEEEEcCeEEEE
Q 021080 165 DLHR-THNSACTGVVIGGKVHVLHKG------LSTVQVLD--HMGLGWTVEDYGWLQ----------GPMAIVHDSVYLM 225 (317)
Q Consensus 165 ~~p~-~~r~~~~~~~~~g~lyv~gG~------~~~v~~yd--~~~~~W~~~~~~~~~----------~~~~~~~~~ly~~ 225 (317)
+||. + |..+++++++++|||+||. ...++.|| +.+++|+.+++++.+ +.+++++|+||++
T Consensus 185 ~~p~~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~~~~~~~~~a~~~~~~Iyv~ 263 (346)
T TIGR03547 185 ENPFLG-TAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPPPKSSSQEGLAGAFAGISNGVLLVA 263 (346)
T ss_pred cCCCCc-CCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCCCCCCCccccccEEeeeEECCEEEEe
Confidence 9996 6 7888889999999999992 13455555 577799999987541 1156789999999
Q ss_pred eCc------------------------EEEEecCCc--eEEEeccccccccccEEEEEECCeEEEEeCcccCCCCceecc
Q 021080 226 SHG------------------------LIIKQHRDV--RKVVASASEFRRRIGFAMIGMGDDIYVIGGVIGPDRWNWDIK 279 (317)
Q Consensus 226 g~~------------------------~~~~yd~~~--W~~v~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~ 279 (317)
||. .+..||++. |+.+..+| .+|..+++++++|+|||+||....+ .
T Consensus 264 GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp--~~~~~~~~~~~~~~iyv~GG~~~~~------~ 335 (346)
T TIGR03547 264 GGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGKLP--QGLAYGVSVSWNNGVLLIGGENSGG------K 335 (346)
T ss_pred ecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccCCCC--CCceeeEEEEcCCEEEEEeccCCCC------C
Confidence 982 345677665 99999998 5678888889999999999987664 3
Q ss_pred cCcceeEee
Q 021080 280 PMSDVDVLT 288 (317)
Q Consensus 280 ~~~~v~~yd 288 (317)
..++|+.|.
T Consensus 336 ~~~~v~~~~ 344 (346)
T TIGR03547 336 AVTDVYLLS 344 (346)
T ss_pred EeeeEEEEE
Confidence 566777654
No 19
>PHA02790 Kelch-like protein; Provisional
Probab=99.96 E-value=1.5e-27 Score=224.26 Aligned_cols=168 Identities=13% Similarity=0.210 Sum_probs=146.4
Q ss_pred EEEeCCEEEEEcCcCCCCCCCCCCCCCcccccceeEecccCCCCCCCcCCCceeEEeeCCCCceeeCCCCCccCCCceEE
Q 021080 97 VVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRGFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHNSACTG 176 (317)
Q Consensus 97 ~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~G~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~r~~~~~ 176 (317)
++..++.||++||.+. ....+++++||+.+++|..+++|+.+ |..+++
T Consensus 267 ~~~~~~~lyviGG~~~-------------------------------~~~~~~v~~Ydp~~~~W~~~~~m~~~-r~~~~~ 314 (480)
T PHA02790 267 STHVGEVVYLIGGWMN-------------------------------NEIHNNAIAVNYISNNWIPIPPMNSP-RLYASG 314 (480)
T ss_pred eEEECCEEEEEcCCCC-------------------------------CCcCCeEEEEECCCCEEEECCCCCch-hhcceE
Confidence 4568999999999743 22457899999999999999999999 988899
Q ss_pred EEECCEEEEEec--CceeEEEEeCCCCcEEeccCCcc---CCcEEEEcCeEEEEeC-----cEEEEecCCc--eEEEecc
Q 021080 177 VVIGGKVHVLHK--GLSTVQVLDHMGLGWTVEDYGWL---QGPMAIVHDSVYLMSH-----GLIIKQHRDV--RKVVASA 244 (317)
Q Consensus 177 ~~~~g~lyv~gG--~~~~v~~yd~~~~~W~~~~~~~~---~~~~~~~~~~ly~~g~-----~~~~~yd~~~--W~~v~~~ 244 (317)
++++|+||++|| ....+++||+.+++|+.+++++. .+.+++++|+||++|| +.+..||+++ |+.+++|
T Consensus 315 v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m 394 (480)
T PHA02790 315 VPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPST 394 (480)
T ss_pred EEECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCC
Confidence 999999999999 34679999999999999998875 5677889999999998 3577899877 9999999
Q ss_pred ccccccccEEEEEECCeEEEEeCcccCCCCceecccCcceeEeecCCCCCceeecccCCCCCCceeeeeEee
Q 021080 245 SEFRRRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAERPTWRQVSPMTRCRGTILGCTQLR 316 (317)
Q Consensus 245 ~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~~~~W~~~~~~p~~~~~~~~~~~~~ 316 (317)
+ .+|..+++++++|+||++|| .+++||++++ +|+.+++||.+|.. +++|+++
T Consensus 395 ~--~~r~~~~~~~~~~~IYv~GG---------------~~e~ydp~~~--~W~~~~~m~~~r~~-~~~~v~~ 446 (480)
T PHA02790 395 Y--YPHYKSCALVFGRRLFLVGR---------------NAEFYCESSN--TWTLIDDPIYPRDN-PELIIVD 446 (480)
T ss_pred C--CccccceEEEECCEEEEECC---------------ceEEecCCCC--cEeEcCCCCCCccc-cEEEEEC
Confidence 8 68888899999999999998 2468999999 99999999999998 5777664
No 20
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=99.93 E-value=4.1e-25 Score=182.33 Aligned_cols=196 Identities=15% Similarity=0.171 Sum_probs=156.7
Q ss_pred HHHHHhcCC--cCceEEEEEeCC-----CCceEEEeCCCCCEeecCCCCccccccCCeeEEEeCCEEEEEcCcCCCCCCC
Q 021080 45 FKARQEVGS--SENLLCVCAFDP-----ENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPL 117 (317)
Q Consensus 45 ~~~~~~~~~--~~~~l~v~gg~~-----~~~~~~yd~~~~~W~~~~~~p~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~ 117 (317)
+..|..|.. -++.+|+-||-. -+-+++|||++++|.+...-..-|.+|.+|+++++++.+|||||+.+..
T Consensus 76 PyqRYGHtvV~y~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a--- 152 (392)
T KOG4693|consen 76 PYQRYGHTVVEYQDKAYVWGGRNDDEGACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEEDA--- 152 (392)
T ss_pred chhhcCceEEEEcceEEEEcCccCcccccceeeeeccccccccccceeeecCCccCCceeeEECcEEEEecChHHHH---
Confidence 334444433 278999999832 4678999999999987643222234599999999999999999986532
Q ss_pred CCCCCCcccccceeEecccCCCCCCCcCCCceeEEeeCCCCceeeC---CCCCccCCCceEEEEECCEEEEEec------
Q 021080 118 TGDQDGSFATNEVWSYDPVTRGFTSCRKSISQAEMYDPEKDVWVPI---PDLHRTHNSACTGVVIGGKVHVLHK------ 188 (317)
Q Consensus 118 ~~~~~~~~~~~~~~~~d~~~~G~~~~~~~~~~~~~yd~~t~~W~~~---~~~p~~~r~~~~~~~~~g~lyv~gG------ 188 (317)
.+-.++++++|..|-+|+.+ ...|.- |..|+++++++.+|++||
T Consensus 153 --------------------------~~FS~d~h~ld~~TmtWr~~~Tkg~Pprw-RDFH~a~~~~~~MYiFGGR~D~~g 205 (392)
T KOG4693|consen 153 --------------------------QRFSQDTHVLDFATMTWREMHTKGDPPRW-RDFHTASVIDGMMYIFGGRSDESG 205 (392)
T ss_pred --------------------------HhhhccceeEeccceeeeehhccCCCchh-hhhhhhhhccceEEEeccccccCC
Confidence 33457899999999999988 466777 999999999999999999
Q ss_pred --------CceeEEEEeCCCCcEEeccCCcc------CCcEEEEcCeEEEEeC---------cEEEEecCCc--eEEEec
Q 021080 189 --------GLSTVQVLDHMGLGWTVEDYGWL------QGPMAIVHDSVYLMSH---------GLIIKQHRDV--RKVVAS 243 (317)
Q Consensus 189 --------~~~~v~~yd~~~~~W~~~~~~~~------~~~~~~~~~~ly~~g~---------~~~~~yd~~~--W~~v~~ 243 (317)
..+.+..+|+.++.|..-++... .+++-+.+++||++|| +++|.||+.+ |..+..
T Consensus 206 pfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRRSHS~fvYng~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~~ 285 (392)
T KOG4693|consen 206 PFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRRSHSTFVYNGKMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVISV 285 (392)
T ss_pred CccchhhhhcceeEEEeccccccccCCCCCcCCCcccccceEEEcceEEEecccchhhhhhhcceeecccccchheeeec
Confidence 35689999999999998765432 7888999999999998 6899999998 999874
Q ss_pred ccc-ccccccEEEEEECCeEEEEeCccc
Q 021080 244 ASE-FRRRIGFAMIGMGDDIYVIGGVIG 270 (317)
Q Consensus 244 ~~~-~~~r~~~~~~~~~~~lyv~GG~~~ 270 (317)
-.. +..|.....++.++|+|+|||...
T Consensus 286 ~Gk~P~aRRRqC~~v~g~kv~LFGGTsP 313 (392)
T KOG4693|consen 286 RGKYPSARRRQCSVVSGGKVYLFGGTSP 313 (392)
T ss_pred cCCCCCcccceeEEEECCEEEEecCCCC
Confidence 321 355666678889999999999876
No 21
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=99.91 E-value=9.6e-23 Score=191.05 Aligned_cols=229 Identities=17% Similarity=0.228 Sum_probs=185.3
Q ss_pred ChhhHHHHHhcCC--cCceEEEEEeCC----CC--ceEEEeCCCCCEeecCCCCccccccCCeeEEEeCCEEEEEcCcCC
Q 021080 41 SPELFKARQEVGS--SENLLCVCAFDP----EN--LWQLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSD 112 (317)
Q Consensus 41 s~~~~~~~~~~~~--~~~~l~v~gg~~----~~--~~~~yd~~~~~W~~~~~~p~~~~~r~~~~~~~~~~~iyv~GG~~~ 112 (317)
....+.+|..|.+ .++.+||+||.. .. +++.+|..+..|.....-...|.+|++|++++++++||+|||...
T Consensus 54 ~~~~p~~R~~hs~~~~~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~ 133 (482)
T KOG0379|consen 54 LGVGPIPRAGHSAVLIGNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDK 133 (482)
T ss_pred CCCCcchhhccceeEECCEEEEECCCCCCCccccceeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEccccC
Confidence 4556777777765 488999999943 22 599999999999887655555557999999999999999999864
Q ss_pred CCCCCCCCCCCcccccceeEecccCCCCCCCcCCCceeEEeeCCCCceeeC---CCCCccCCCceEEEEECCEEEEEec-
Q 021080 113 AVDPLTGDQDGSFATNEVWSYDPVTRGFTSCRKSISQAEMYDPEKDVWVPI---PDLHRTHNSACTGVVIGGKVHVLHK- 188 (317)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~d~~~~G~~~~~~~~~~~~~yd~~t~~W~~~---~~~p~~~r~~~~~~~~~g~lyv~gG- 188 (317)
. ....++++.||+.|++|+.+ ..+|.+ |.+|++++++.++||+||
T Consensus 134 ~------------------------------~~~~~~l~~~d~~t~~W~~l~~~~~~P~~-r~~Hs~~~~g~~l~vfGG~ 182 (482)
T KOG0379|consen 134 K------------------------------YRNLNELHSLDLSTRTWSLLSPTGDPPPP-RAGHSATVVGTKLVVFGGI 182 (482)
T ss_pred C------------------------------CCChhheEeccCCCCcEEEecCcCCCCCC-cccceEEEECCEEEEECCc
Confidence 1 22368899999999999987 456888 999999999999999999
Q ss_pred -----CceeEEEEeCCCCcEEeccCCcc------CCcEEEEcCeEEEEeC--------cEEEEecCCc--eEEEecccc-
Q 021080 189 -----GLSTVQVLDHMGLGWTVEDYGWL------QGPMAIVHDSVYLMSH--------GLIIKQHRDV--RKVVASASE- 246 (317)
Q Consensus 189 -----~~~~v~~yd~~~~~W~~~~~~~~------~~~~~~~~~~ly~~g~--------~~~~~yd~~~--W~~v~~~~~- 246 (317)
..+++++||+.+.+|.++..... .|.++++++++++++| ++++.+|..+ |+.+.....
T Consensus 183 ~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~pR~gH~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~g~~ 262 (482)
T KOG0379|consen 183 GGTGDSLNDLHIYDLETSTWSELDTQGEAPSPRYGHAMVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLLPTGGDL 262 (482)
T ss_pred cCcccceeeeeeeccccccceecccCCCCCCCCCCceEEEECCeEEEEeccccCCceecceEeeecccceeeeccccCCC
Confidence 46899999999999998864322 6788899999999987 5789999888 886653332
Q ss_pred ccccccEEEEEECCeEEEEeCcccCCCCceecc-cCcceeEeecCCCCCceeecccC----CCCCCc
Q 021080 247 FRRRIGFAMIGMGDDIYVIGGVIGPDRWNWDIK-PMSDVDVLTVGAERPTWRQVSPM----TRCRGT 308 (317)
Q Consensus 247 ~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~-~~~~v~~yd~~~~~~~W~~~~~~----p~~~~~ 308 (317)
+.+|..|.++..+++++++||..... . ...+++.||.+++ .|..+... |.+|..
T Consensus 263 p~~R~~h~~~~~~~~~~l~gG~~~~~------~~~l~~~~~l~~~~~--~w~~~~~~~~~~~~~~~~ 321 (482)
T KOG0379|consen 263 PSPRSGHSLTVSGDHLLLFGGGTDPK------QEPLGDLYGLDLETL--VWSKVESVGVVRPSPRLG 321 (482)
T ss_pred CCCcceeeeEEECCEEEEEcCCcccc------ccccccccccccccc--ceeeeecccccccccccc
Confidence 37999999999999999999987652 2 5789999999999 99988543 455554
No 22
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=99.91 E-value=2.9e-23 Score=180.58 Aligned_cols=257 Identities=12% Similarity=0.102 Sum_probs=185.9
Q ss_pred CCCCcHHHHHHHhccCCCCchhhhhhcCHhHHHhhcChhhHHHHHhcC----CcCceEEEEEeCC--------CCceEEE
Q 021080 5 IEGLPDAVALRCLARVPFFLHPKLELVSRSWRAAIRSPELFKARQEVG----SSENLLCVCAFDP--------ENLWQLY 72 (317)
Q Consensus 5 ~~~Lp~d~~~~~l~r~p~~~~~~~~~v~k~w~~l~~s~~~~~~~~~~~----~~~~~l~v~gg~~--------~~~~~~y 72 (317)
-+.|-++.|.+++..+..+..-... ..+-.-+.+|.... ...+.|++|||+. .+++|.|
T Consensus 33 ~~e~de~~i~~~iq~~eaK~~e~~~---------e~~~~~PspRsn~sl~~nPekeELilfGGEf~ngqkT~vYndLy~Y 103 (521)
T KOG1230|consen 33 NEELDEADIAEIIQSLEAKQIEHVV---------ETSVPPPSPRSNPSLFANPEKEELILFGGEFYNGQKTHVYNDLYSY 103 (521)
T ss_pred CcccchHHHHHHHHhhhhhccceee---------eccCCCCCCCCCcceeeccCcceeEEecceeecceeEEEeeeeeEE
Confidence 3456677777788777666431110 11111222222211 1244888999953 5899999
Q ss_pred eCCCCCEeecCCCCccccccCCeeEEEeC-CEEEEEcCcCCCCCCCCCCCCCcccccceeEecccCCCCCCCcCCCceeE
Q 021080 73 DPLRDLWITLPVLPSKIRHLAHFGVVSTA-GKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRGFTSCRKSISQAE 151 (317)
Q Consensus 73 d~~~~~W~~~~~~p~~~~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~G~~~~~~~~~~~~ 151 (317)
|.+.++|..+. .|+.|++|+.|+++++- |.+|+|||....- .-. ..--.++.|
T Consensus 104 n~k~~eWkk~~-spn~P~pRsshq~va~~s~~l~~fGGEfaSP--------------nq~-----------qF~HYkD~W 157 (521)
T KOG1230|consen 104 NTKKNEWKKVV-SPNAPPPRSSHQAVAVPSNILWLFGGEFASP--------------NQE-----------QFHHYKDLW 157 (521)
T ss_pred eccccceeEec-cCCCcCCCccceeEEeccCeEEEeccccCCc--------------chh-----------hhhhhhhee
Confidence 99999999984 44444569888877775 8999999974321 000 011257899
Q ss_pred EeeCCCCceeeC--CCCCccCCCceEEEEECCEEEEEec---------CceeEEEEeCCCCcEEeccCCc--c----CCc
Q 021080 152 MYDPEKDVWVPI--PDLHRTHNSACTGVVIGGKVHVLHK---------GLSTVQVLDHMGLGWTVEDYGW--L----QGP 214 (317)
Q Consensus 152 ~yd~~t~~W~~~--~~~p~~~r~~~~~~~~~g~lyv~gG---------~~~~v~~yd~~~~~W~~~~~~~--~----~~~ 214 (317)
+||..+++|+++ +.-|.+ |.+|..++...+|++||| ..+++++||+.+-+|+.+.+.- + .+.
T Consensus 158 ~fd~~trkweql~~~g~PS~-RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~PtpRSGcq 236 (521)
T KOG1230|consen 158 LFDLKTRKWEQLEFGGGPSP-RSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPRSGCQ 236 (521)
T ss_pred eeeeccchheeeccCCCCCC-CccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCCCCCCcce
Confidence 999999999988 567888 999999999999999999 4689999999999999997632 2 445
Q ss_pred EEEE-cCeEEEEeC----------------cEEEEecCCc-------eEEEeccc-cccccccEEEEEE-CCeEEEEeCc
Q 021080 215 MAIV-HDSVYLMSH----------------GLIIKQHRDV-------RKVVASAS-EFRRRIGFAMIGM-GDDIYVIGGV 268 (317)
Q Consensus 215 ~~~~-~~~ly~~g~----------------~~~~~yd~~~-------W~~v~~~~-~~~~r~~~~~~~~-~~~lyv~GG~ 268 (317)
.++. .|.||++|| ++++.++++. |..+.+.. .|.+|.+++++.. +++-+.|||.
T Consensus 237 ~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~va~n~kal~FGGV 316 (521)
T KOG1230|consen 237 FSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVAVAKNHKALFFGGV 316 (521)
T ss_pred EEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEEEecCCceEEecce
Confidence 5555 899999998 4788887654 77777553 2478999988877 5699999999
Q ss_pred ccCC--CCceecccCcceeEeecCCCCCceeec
Q 021080 269 IGPD--RWNWDIKPMSDVDVLTVGAERPTWRQV 299 (317)
Q Consensus 269 ~~~~--~~~~~~~~~~~v~~yd~~~~~~~W~~~ 299 (317)
.+.. +........++++.||+..+ +|...
T Consensus 317 ~D~eeeeEsl~g~F~NDLy~fdlt~n--rW~~~ 347 (521)
T KOG1230|consen 317 CDLEEEEESLSGEFFNDLYFFDLTRN--RWSEG 347 (521)
T ss_pred ecccccchhhhhhhhhhhhheecccc--hhhHh
Confidence 7733 23334467899999999999 99876
No 23
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=99.86 E-value=2.9e-20 Score=174.39 Aligned_cols=187 Identities=18% Similarity=0.216 Sum_probs=153.3
Q ss_pred cccccCCeeEEEeCCEEEEEcCcCCCCCCCCCCCCCcccccceeEecccCCCCCCCcCCCceeEEeeCCCCceeeC---C
Q 021080 88 KIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRGFTSCRKSISQAEMYDPEKDVWVPI---P 164 (317)
Q Consensus 88 ~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~G~~~~~~~~~~~~~yd~~t~~W~~~---~ 164 (317)
.|.+|..|+++.+++++||+||...... . ...+++++|.++..|... .
T Consensus 57 ~p~~R~~hs~~~~~~~~~vfGG~~~~~~----------------------------~-~~~dl~~~d~~~~~w~~~~~~g 107 (482)
T KOG0379|consen 57 GPIPRAGHSAVLIGNKLYVFGGYGSGDR----------------------------L-TDLDLYVLDLESQLWTKPAATG 107 (482)
T ss_pred CcchhhccceeEECCEEEEECCCCCCCc----------------------------c-ccceeEEeecCCcccccccccC
Confidence 3445999999999999999999864321 1 111699999999999876 4
Q ss_pred CCCccCCCceEEEEECCEEEEEecC------ceeEEEEeCCCCcEEeccCC---cc---CCcEEEEcCeEEEEeC-----
Q 021080 165 DLHRTHNSACTGVVIGGKVHVLHKG------LSTVQVLDHMGLGWTVEDYG---WL---QGPMAIVHDSVYLMSH----- 227 (317)
Q Consensus 165 ~~p~~~r~~~~~~~~~g~lyv~gG~------~~~v~~yd~~~~~W~~~~~~---~~---~~~~~~~~~~ly~~g~----- 227 (317)
..|.+ |++|..+.++.+||++||. .+++..||+.+.+|..+... ++ .|.+++++++||++||
T Consensus 108 ~~p~~-r~g~~~~~~~~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~ 186 (482)
T KOG0379|consen 108 DEPSP-RYGHSLSAVGDKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTG 186 (482)
T ss_pred CCCCc-ccceeEEEECCeEEEEccccCCCCChhheEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCcc
Confidence 56778 9999999999999999993 35999999999999977532 22 7888999999999998
Q ss_pred ---cEEEEecCCc--eEEEeccc-cccccccEEEEEECCeEEEEeCcccCCCCceecccCcceeEeecCCCCCceeecc-
Q 021080 228 ---GLIIKQHRDV--RKVVASAS-EFRRRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAERPTWRQVS- 300 (317)
Q Consensus 228 ---~~~~~yd~~~--W~~v~~~~-~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~~~~W~~~~- 300 (317)
++++.||+++ |.++.... .+.+|.+|+++++++++++|||.+..+ .+++|++.+|+.+. +|..+.
T Consensus 187 ~~~ndl~i~d~~~~~W~~~~~~g~~P~pR~gH~~~~~~~~~~v~gG~~~~~------~~l~D~~~ldl~~~--~W~~~~~ 258 (482)
T KOG0379|consen 187 DSLNDLHIYDLETSTWSELDTQGEAPSPRYGHAMVVVGNKLLVFGGGDDGD------VYLNDVHILDLSTW--EWKLLPT 258 (482)
T ss_pred cceeeeeeeccccccceecccCCCCCCCCCCceEEEECCeEEEEeccccCC------ceecceEeeecccc--eeeeccc
Confidence 6899999988 99988554 347899999999999999999988333 58899999999998 999764
Q ss_pred --cCCCCCCceeeee
Q 021080 301 --PMTRCRGTILGCT 313 (317)
Q Consensus 301 --~~p~~~~~~~~~~ 313 (317)
.+|.+|.. |..+
T Consensus 259 ~g~~p~~R~~-h~~~ 272 (482)
T KOG0379|consen 259 GGDLPSPRSG-HSLT 272 (482)
T ss_pred cCCCCCCcce-eeeE
Confidence 46999998 4444
No 24
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=99.84 E-value=5.7e-20 Score=160.22 Aligned_cols=196 Identities=15% Similarity=0.183 Sum_probs=151.8
Q ss_pred ccCCeeEEEe--CCEEEEEcCcCCCCCCCCCCCCCcccccceeEecccCCCCCCCcCCCceeEEeeCCCCceeeC--CCC
Q 021080 91 HLAHFGVVST--AGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRGFTSCRKSISQAEMYDPEKDVWVPI--PDL 166 (317)
Q Consensus 91 ~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~G~~~~~~~~~~~~~yd~~t~~W~~~--~~~ 166 (317)
+|.++++++. .+.+++|||..-. |. -.-..++++.||.++++|+++ ++.
T Consensus 66 pRsn~sl~~nPekeELilfGGEf~n---------gq------------------kT~vYndLy~Yn~k~~eWkk~~spn~ 118 (521)
T KOG1230|consen 66 PRSNPSLFANPEKEELILFGGEFYN---------GQ------------------KTHVYNDLYSYNTKKNEWKKVVSPNA 118 (521)
T ss_pred CCCCcceeeccCcceeEEecceeec---------ce------------------eEEEeeeeeEEeccccceeEeccCCC
Confidence 4998887765 5689999996421 11 122357899999999999988 566
Q ss_pred CccCCCceEEEEEC-CEEEEEec-----------CceeEEEEeCCCCcEEeccCCc-----cCCcEEEEcCeEEEEeC--
Q 021080 167 HRTHNSACTGVVIG-GKVHVLHK-----------GLSTVQVLDHMGLGWTVEDYGW-----LQGPMAIVHDSVYLMSH-- 227 (317)
Q Consensus 167 p~~~r~~~~~~~~~-g~lyv~gG-----------~~~~v~~yd~~~~~W~~~~~~~-----~~~~~~~~~~~ly~~g~-- 227 (317)
|.+ |..|++|++. |.+|++|| --.+++.||+.+++|+.+.-.- ..|.+++-..+|+++||
T Consensus 119 P~p-Rsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~PS~RSGHRMvawK~~lilFGGFh 197 (521)
T KOG1230|consen 119 PPP-RSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGPSPRSGHRMVAWKRQLILFGGFH 197 (521)
T ss_pred cCC-CccceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCCCCCCCccceeEEeeeeEEEEccee
Confidence 778 9999988876 89999999 1257999999999999986322 16788899999999998
Q ss_pred ---------cEEEEecCCc--eEEEeccc-cccccccEEEEEE-CCeEEEEeCcccCC--CCceecccCcceeEeecCCC
Q 021080 228 ---------GLIIKQHRDV--RKVVASAS-EFRRRIGFAMIGM-GDDIYVIGGVIGPD--RWNWDIKPMSDVDVLTVGAE 292 (317)
Q Consensus 228 ---------~~~~~yd~~~--W~~v~~~~-~~~~r~~~~~~~~-~~~lyv~GG~~~~~--~~~~~~~~~~~v~~yd~~~~ 292 (317)
+++|+||.++ |+++.... .|.+|.++.+.+. +|.|||.||++..- ....++...+|+|+.+++++
T Consensus 198 d~nr~y~YyNDvy~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~ 277 (521)
T KOG1230|consen 198 DSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDG 277 (521)
T ss_pred cCCCceEEeeeeEEEeccceeeeeccCCCCCCCCCCcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcC
Confidence 6899999998 99998722 2589999999888 99999999987542 11112457789999999984
Q ss_pred -CC--ceeeccc---CCCCCCceeeeeEe
Q 021080 293 -RP--TWRQVSP---MTRCRGTILGCTQL 315 (317)
Q Consensus 293 -~~--~W~~~~~---~p~~~~~~~~~~~~ 315 (317)
.+ .|+.+-+ .|.+|++ ++||+.
T Consensus 278 ~~dKw~W~kvkp~g~kPspRsg-fsv~va 305 (521)
T KOG1230|consen 278 REDKWVWTKVKPSGVKPSPRSG-FSVAVA 305 (521)
T ss_pred CCcceeEeeccCCCCCCCCCCc-eeEEEe
Confidence 22 4677744 4999999 677763
No 25
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.81 E-value=3e-19 Score=159.47 Aligned_cols=248 Identities=15% Similarity=0.203 Sum_probs=169.1
Q ss_pred hHHHhhcCh-hhHHHHHhcCC--cCceEEEEEeCC---CCceEEEeCCCCCEeecCCCCccccccCCeeEEEeCCEEEEE
Q 021080 34 SWRAAIRSP-ELFKARQEVGS--SENLLCVCAFDP---ENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVL 107 (317)
Q Consensus 34 ~w~~l~~s~-~~~~~~~~~~~--~~~~l~v~gg~~---~~~~~~yd~~~~~W~~~~~~p~~~~~r~~~~~~~~~~~iyv~ 107 (317)
+||.+..+- ..+++|..|.+ ....+.+|||.. .++++.||..+++|.--.....-|++...|..+-.|.+||+|
T Consensus 18 rWrrV~~~tGPvPrpRHGHRAVaikELiviFGGGNEGiiDELHvYNTatnqWf~PavrGDiPpgcAA~GfvcdGtrilvF 97 (830)
T KOG4152|consen 18 RWRRVQQSTGPVPRPRHGHRAVAIKELIVIFGGGNEGIIDELHVYNTATNQWFAPAVRGDIPPGCAAFGFVCDGTRILVF 97 (830)
T ss_pred ceEEEecccCCCCCccccchheeeeeeEEEecCCcccchhhhhhhccccceeecchhcCCCCCchhhcceEecCceEEEE
Confidence 677654332 34555554443 477888998854 678999999999998643322223358888999999999999
Q ss_pred cCcCCCCCCCCCCCCCcccccceeEecccCCCCCCCcCCCceeEEeeCCCCceeeCC-------CCCccCCCceEEEEEC
Q 021080 108 GGGSDAVDPLTGDQDGSFATNEVWSYDPVTRGFTSCRKSISQAEMYDPEKDVWVPIP-------DLHRTHNSACTGVVIG 180 (317)
Q Consensus 108 GG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~G~~~~~~~~~~~~~yd~~t~~W~~~~-------~~p~~~r~~~~~~~~~ 180 (317)
||..+. +...++.+......-.|+++. ++|-+ |.+|+-.+++
T Consensus 98 GGMvEY------------------------------GkYsNdLYELQasRWeWkrlkp~~p~nG~pPCP-RlGHSFsl~g 146 (830)
T KOG4152|consen 98 GGMVEY------------------------------GKYSNDLYELQASRWEWKRLKPKTPKNGPPPCP-RLGHSFSLVG 146 (830)
T ss_pred ccEeee------------------------------ccccchHHHhhhhhhhHhhcCCCCCCCCCCCCC-ccCceeEEec
Confidence 998542 223344322222233466662 35667 9999999999
Q ss_pred CEEEEEec--------------CceeEEEEeCCCCc----EEecc------CCccCCcEEEE------cCeEEEEeC---
Q 021080 181 GKVHVLHK--------------GLSTVQVLDHMGLG----WTVED------YGWLQGPMAIV------HDSVYLMSH--- 227 (317)
Q Consensus 181 g~lyv~gG--------------~~~~v~~yd~~~~~----W~~~~------~~~~~~~~~~~------~~~ly~~g~--- 227 (317)
+|-|+||| .+++++..+++-+. |+..- .....|.++.+ ..+||++||
T Consensus 147 nKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G 226 (830)
T KOG4152|consen 147 NKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSG 226 (830)
T ss_pred cEeEEeccccccccCcccccchhhcceEEEEeccCCceEEEecccccCCCCCCcccceeEEEEeccCCcceEEEEccccc
Confidence 99999999 45778888776443 87442 11126677666 237999998
Q ss_pred ---cEEEEecCCc--eEEEeccc-cccccccEEEEEECCeEEEEeCcccCCCCce-------ecccCcceeEeecCCCCC
Q 021080 228 ---GLIIKQHRDV--RKVVASAS-EFRRRIGFAMIGMGDDIYVIGGVIGPDRWNW-------DIKPMSDVDVLTVGAERP 294 (317)
Q Consensus 228 ---~~~~~yd~~~--W~~v~~~~-~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~-------~~~~~~~v~~yd~~~~~~ 294 (317)
+++|.+|.++ |.+..--. .+++|.-|..+.+++|+|||||.-..-+... +=+-.+.+-++++.+.
T Consensus 227 ~RLgDLW~Ldl~Tl~W~kp~~~G~~PlPRSLHsa~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~-- 304 (830)
T KOG4152|consen 227 CRLGDLWTLDLDTLTWNKPSLSGVAPLPRSLHSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTM-- 304 (830)
T ss_pred ccccceeEEecceeecccccccCCCCCCcccccceeecceeEEecceeeeeccccccccccceeeeccceeeeeecch--
Confidence 6899999998 98765222 1378999999999999999999643221111 0123445678899998
Q ss_pred ceeecc-------cCCCCCCceeeeeEe
Q 021080 295 TWRQVS-------PMTRCRGTILGCTQL 315 (317)
Q Consensus 295 ~W~~~~-------~~p~~~~~~~~~~~~ 315 (317)
.|+.+- ..|++|.+ |+++++
T Consensus 305 ~W~tl~~d~~ed~tiPR~RAG-HCAvAi 331 (830)
T KOG4152|consen 305 AWETLLMDTLEDNTIPRARAG-HCAVAI 331 (830)
T ss_pred heeeeeecccccccccccccc-ceeEEe
Confidence 998772 26899998 566554
No 26
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.72 E-value=7.5e-17 Score=144.28 Aligned_cols=221 Identities=15% Similarity=0.166 Sum_probs=151.4
Q ss_pred hhhcCHhHHHhhcChhhHHHHHhcCC--cCceEEEEEe-----CCCCceEEEeCCCCCEeecCCCC----ccccccCCee
Q 021080 28 LELVSRSWRAAIRSPELFKARQEVGS--SENLLCVCAF-----DPENLWQLYDPLRDLWITLPVLP----SKIRHLAHFG 96 (317)
Q Consensus 28 ~~~v~k~w~~l~~s~~~~~~~~~~~~--~~~~l~v~gg-----~~~~~~~~yd~~~~~W~~~~~~p----~~~~~r~~~~ 96 (317)
+....++|..=.-..+.+...+.++. .++.+|+||| ...+++|-+.-..=+|.++.+-+ .+||+|-+|+
T Consensus 62 YNTatnqWf~PavrGDiPpgcAA~GfvcdGtrilvFGGMvEYGkYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHS 141 (830)
T KOG4152|consen 62 YNTATNQWFAPAVRGDIPPGCAAFGFVCDGTRILVFGGMVEYGKYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHS 141 (830)
T ss_pred hccccceeecchhcCCCCCchhhcceEecCceEEEEccEeeeccccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCce
Confidence 34445666653333455555556554 4889999998 23566554444444566664322 2367799999
Q ss_pred EEEeCCEEEEEcCcCCCCCCCCCCCCCcccccceeEecccCCCCCCCcCCCceeEEeeCCCC----ceeeC---CCCCcc
Q 021080 97 VVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRGFTSCRKSISQAEMYDPEKD----VWVPI---PDLHRT 169 (317)
Q Consensus 97 ~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~G~~~~~~~~~~~~~yd~~t~----~W~~~---~~~p~~ 169 (317)
...++++.|+|||.....+ |++. .....+++.++.+..-+ .|... +.+|.+
T Consensus 142 Fsl~gnKcYlFGGLaNdse------------------Dpkn----NvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~p 199 (830)
T KOG4152|consen 142 FSLVGNKCYLFGGLANDSE------------------DPKN----NVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPP 199 (830)
T ss_pred eEEeccEeEEecccccccc------------------Cccc----ccchhhcceEEEEeccCCceEEEecccccCCCCCC
Confidence 9999999999999754321 1111 12334566666665533 47654 678889
Q ss_pred CCCceEEEEE------CCEEEEEec----CceeEEEEeCCCCcEEecc-----CCcc-CCcEEEEcCeEEEEeC------
Q 021080 170 HNSACTGVVI------GGKVHVLHK----GLSTVQVLDHMGLGWTVED-----YGWL-QGPMAIVHDSVYLMSH------ 227 (317)
Q Consensus 170 ~r~~~~~~~~------~g~lyv~gG----~~~~v~~yd~~~~~W~~~~-----~~~~-~~~~~~~~~~ly~~g~------ 227 (317)
|..|.++++ ..++||+|| .+.+++.+|+.+-.|.+.. +++. .|++.+++|+||++||
T Consensus 200 -RESHTAViY~eKDs~~skmvvyGGM~G~RLgDLW~Ldl~Tl~W~kp~~~G~~PlPRSLHsa~~IGnKMyvfGGWVPl~~ 278 (830)
T KOG4152|consen 200 -RESHTAVIYTEKDSKKSKMVVYGGMSGCRLGDLWTLDLDTLTWNKPSLSGVAPLPRSLHSATTIGNKMYVFGGWVPLVM 278 (830)
T ss_pred -cccceeEEEEeccCCcceEEEEcccccccccceeEEecceeecccccccCCCCCCcccccceeecceeEEecceeeeec
Confidence 999999887 337999999 5789999999999998765 3333 6788899999999998
Q ss_pred ---------------cEEEEecCCc--eEEEec-----cccccccccEEEEEECCeEEEEeCcccC
Q 021080 228 ---------------GLIIKQHRDV--RKVVAS-----ASEFRRRIGFAMIGMGDDIYVIGGVIGP 271 (317)
Q Consensus 228 ---------------~~~~~yd~~~--W~~v~~-----~~~~~~r~~~~~~~~~~~lyv~GG~~~~ 271 (317)
+.+-+++.++ |+.+-. -..+..|.+|.+++++.++|+..|.++.
T Consensus 279 ~~~~~~~hekEWkCTssl~clNldt~~W~tl~~d~~ed~tiPR~RAGHCAvAigtRlYiWSGRDGY 344 (830)
T KOG4152|consen 279 DDVKVATHEKEWKCTSSLACLNLDTMAWETLLMDTLEDNTIPRARAGHCAVAIGTRLYIWSGRDGY 344 (830)
T ss_pred cccccccccceeeeccceeeeeecchheeeeeeccccccccccccccceeEEeccEEEEEeccchh
Confidence 1233444444 886541 1123789999999999999999998764
No 27
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.72 E-value=5.1e-16 Score=133.86 Aligned_cols=201 Identities=16% Similarity=0.203 Sum_probs=152.7
Q ss_pred cCceEEEEEeCCCCceEEEeCCC--CCEeecCCCCccccccCCeeEEEeCCEEEEEcCcCCCCCCCCCCCCCccccccee
Q 021080 54 SENLLCVCAFDPENLWQLYDPLR--DLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVW 131 (317)
Q Consensus 54 ~~~~l~v~gg~~~~~~~~yd~~~--~~W~~~~~~p~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~ 131 (317)
.++.+||..|..-..++..|... ..|.++...|.. .|.....++++++||||||.-.... .
T Consensus 45 ig~~~YVGLGs~G~afy~ldL~~~~k~W~~~a~FpG~--~rnqa~~a~~~~kLyvFgG~Gk~~~------------~--- 107 (381)
T COG3055 45 IGDTVYVGLGSAGTAFYVLDLKKPGKGWTKIADFPGG--ARNQAVAAVIGGKLYVFGGYGKSVS------------S--- 107 (381)
T ss_pred ecceEEEEeccCCccceehhhhcCCCCceEcccCCCc--ccccchheeeCCeEEEeeccccCCC------------C---
Confidence 47799998887677889998875 579999999986 6999999999999999999743210 1
Q ss_pred EecccCCCCCCCcCCCceeEEeeCCCCceeeCC-CCCccCCCceEEEEECC-EEEEEec---------------------
Q 021080 132 SYDPVTRGFTSCRKSISQAEMYDPEKDVWVPIP-DLHRTHNSACTGVVIGG-KVHVLHK--------------------- 188 (317)
Q Consensus 132 ~~d~~~~G~~~~~~~~~~~~~yd~~t~~W~~~~-~~p~~~r~~~~~~~~~g-~lyv~gG--------------------- 188 (317)
.....+++++|||.+|+|+++. -.|.. ..+++++.+++ +||++||
T Consensus 108 -----------~~~~~nd~Y~y~p~~nsW~kl~t~sP~g-l~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~ 175 (381)
T COG3055 108 -----------SPQVFNDAYRYDPSTNSWHKLDTRSPTG-LVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKE 175 (381)
T ss_pred -----------CceEeeeeEEecCCCChhheeccccccc-cccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHH
Confidence 1345689999999999999994 45666 67888888888 9999999
Q ss_pred ------------------CceeEEEEeCCCCcEEeccCCcc--CCcEEEE--cCeEEEEeC-------------------
Q 021080 189 ------------------GLSTVQVLDHMGLGWTVEDYGWL--QGPMAIV--HDSVYLMSH------------------- 227 (317)
Q Consensus 189 ------------------~~~~v~~yd~~~~~W~~~~~~~~--~~~~~~~--~~~ly~~g~------------------- 227 (317)
...++..|||++++|+.....+- .+.++++ +|++.++.|
T Consensus 176 ~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~~pf~~~aGsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~ 255 (381)
T COG3055 176 AVDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGENPFYGNAGSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGD 255 (381)
T ss_pred HHHHHHHHHhCCCHHHhcccccccccccccchhhhcCcCcccCccCcceeecCCeEEEEcceecCCccccceeEEEeccC
Confidence 24679999999999998874332 2222221 232333322
Q ss_pred ----------------------------------------------------------------cEEEEecCCceEEEec
Q 021080 228 ----------------------------------------------------------------GLIIKQHRDVRKVVAS 243 (317)
Q Consensus 228 ----------------------------------------------------------------~~~~~yd~~~W~~v~~ 243 (317)
++|+.+|...|+.+..
T Consensus 256 ~~~w~~l~~lp~~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d~g~Wk~~Ge 335 (381)
T COG3055 256 NLKWLKLSDLPAPIGSNKEGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFDNGSWKIVGE 335 (381)
T ss_pred ceeeeeccCCCCCCCCCccccceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEcCCceeeecc
Confidence 2788899777999999
Q ss_pred cccccccccEEEEEECCeEEEEeCcccCCCCceecccCcceeEeecCC
Q 021080 244 ASEFRRRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGA 291 (317)
Q Consensus 244 ~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~ 291 (317)
+| +..+..+.+.++++||+|||....+ +....++..-...
T Consensus 336 Lp--~~l~YG~s~~~nn~vl~IGGE~~~G------ka~~~v~~l~~~g 375 (381)
T COG3055 336 LP--QGLAYGVSLSYNNKVLLIGGETSGG------KATTRVYSLSWDG 375 (381)
T ss_pred cC--CCccceEEEecCCcEEEEccccCCC------eeeeeEEEEEEcC
Confidence 99 6788888899999999999988776 4555666554443
No 28
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.53 E-value=2.4e-13 Score=117.51 Aligned_cols=183 Identities=18% Similarity=0.268 Sum_probs=141.4
Q ss_pred ecCCCCccccccCCeeEEEeCCEEEEEcCcCCCCCCCCCCCCCcccccceeEecccCCCCCCCcCCCceeEEeeCCC--C
Q 021080 81 TLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRGFTSCRKSISQAEMYDPEK--D 158 (317)
Q Consensus 81 ~~~~~p~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~G~~~~~~~~~~~~~yd~~t--~ 158 (317)
++|.+|.. .-+-+.+.+++.+||-=|..+ ...+..|.+. .
T Consensus 29 ~lPdlPvg---~KnG~Ga~ig~~~YVGLGs~G-----------------------------------~afy~ldL~~~~k 70 (381)
T COG3055 29 QLPDLPVG---FKNGAGALIGDTVYVGLGSAG-----------------------------------TAFYVLDLKKPGK 70 (381)
T ss_pred cCCCCCcc---ccccccceecceEEEEeccCC-----------------------------------ccceehhhhcCCC
Confidence 45666664 333466788899998777432 2334444443 5
Q ss_pred ceeeCCCCCccCCCceEEEEECCEEEEEec----------CceeEEEEeCCCCcEEeccCCcc----CCcEEEEcC-eEE
Q 021080 159 VWVPIPDLHRTHNSACTGVVIGGKVHVLHK----------GLSTVQVLDHMGLGWTVEDYGWL----QGPMAIVHD-SVY 223 (317)
Q Consensus 159 ~W~~~~~~p~~~r~~~~~~~~~g~lyv~gG----------~~~~v~~yd~~~~~W~~~~~~~~----~~~~~~~~~-~ly 223 (317)
.|+++..+|-+-|....+++++++||++|| ..+++++||+.+++|..+....+ .+..+..++ ++|
T Consensus 71 ~W~~~a~FpG~~rnqa~~a~~~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t~sP~gl~G~~~~~~~~~~i~ 150 (381)
T COG3055 71 GWTKIADFPGGARNQAVAAVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDTRSPTGLVGASTFSLNGTKIY 150 (381)
T ss_pred CceEcccCCCcccccchheeeCCeEEEeeccccCCCCCceEeeeeEEecCCCChhheeccccccccccceeEecCCceEE
Confidence 799999998765888888999999999999 34789999999999999987665 455566666 899
Q ss_pred EEeC-----------------------------------------cEEEEecCCc--eEEEeccccccccccEEEEEECC
Q 021080 224 LMSH-----------------------------------------GLIIKQHRDV--RKVVASASEFRRRIGFAMIGMGD 260 (317)
Q Consensus 224 ~~g~-----------------------------------------~~~~~yd~~~--W~~v~~~~~~~~r~~~~~~~~~~ 260 (317)
++|| ..+..|++++ |+.+...|- .++++.+++.-++
T Consensus 151 f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~~pf-~~~aGsa~~~~~n 229 (381)
T COG3055 151 FFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGENPF-YGNAGSAVVIKGN 229 (381)
T ss_pred EEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhcccccccccccccchhhhcCcCcc-cCccCcceeecCC
Confidence 9987 1678899887 999998884 5677766666788
Q ss_pred eEEEEeCcccCCCCceecccCcceeEeecCCCCCceeecccCCCCCCc
Q 021080 261 DIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAERPTWRQVSPMTRCRGT 308 (317)
Q Consensus 261 ~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~~~~W~~~~~~p~~~~~ 308 (317)
++.+|.|...++ .....+++++...+..+|..++++|.+.+.
T Consensus 230 ~~~lInGEiKpG------LRt~~~k~~~~~~~~~~w~~l~~lp~~~~~ 271 (381)
T COG3055 230 KLTLINGEIKPG------LRTAEVKQADFGGDNLKWLKLSDLPAPIGS 271 (381)
T ss_pred eEEEEcceecCC------ccccceeEEEeccCceeeeeccCCCCCCCC
Confidence 899999998887 455688999998777799999998887665
No 29
>PF13964 Kelch_6: Kelch motif
Probab=99.30 E-value=5.5e-12 Score=80.58 Aligned_cols=50 Identities=34% Similarity=0.579 Sum_probs=45.2
Q ss_pred ccccEEEEEECCeEEEEeCcccCCCCceecccCcceeEeecCCCCCceeecccCCCCC
Q 021080 249 RRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAERPTWRQVSPMTRCR 306 (317)
Q Consensus 249 ~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~~~~W~~~~~~p~~~ 306 (317)
+|.++++++++++|||+||..... ...+++++||++++ +|+++++||.+|
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~~------~~~~~v~~yd~~t~--~W~~~~~mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNSG------KYSNDVERYDPETN--TWEQLPPMPTPR 50 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCCC------CccccEEEEcCCCC--cEEECCCCCCCC
Confidence 378889999999999999998752 47889999999999 999999999987
No 30
>PF13964 Kelch_6: Kelch motif
Probab=99.26 E-value=1.8e-11 Score=78.12 Aligned_cols=49 Identities=29% Similarity=0.583 Sum_probs=43.3
Q ss_pred cCCeeEEEeCCEEEEEcCcCCCCCCCCCCCCCcccccceeEecccCCCCCCCcCCCceeEEeeCCCCceeeCCCCCccCC
Q 021080 92 LAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRGFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHN 171 (317)
Q Consensus 92 r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~G~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~r 171 (317)
|.++++++++++|||+||.... ....+++++||+++++|+.+++||.+ |
T Consensus 2 R~~~s~v~~~~~iyv~GG~~~~------------------------------~~~~~~v~~yd~~t~~W~~~~~mp~p-R 50 (50)
T PF13964_consen 2 RYGHSAVVVGGKIYVFGGYDNS------------------------------GKYSNDVERYDPETNTWEQLPPMPTP-R 50 (50)
T ss_pred CccCEEEEECCEEEEECCCCCC------------------------------CCccccEEEEcCCCCcEEECCCCCCC-C
Confidence 8899999999999999998641 24578999999999999999999988 5
No 31
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=99.08 E-value=1.9e-10 Score=72.37 Aligned_cols=47 Identities=38% Similarity=0.763 Sum_probs=42.1
Q ss_pred ccccEEEEEECCeEEEEeCcccCCCCceecccCcceeEeecCCCCCceeecccCC
Q 021080 249 RRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAERPTWRQVSPMT 303 (317)
Q Consensus 249 ~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~~~~W~~~~~~p 303 (317)
+|.++++++++++||++||..... ...+.+++||++++ +|+.+++||
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~------~~~~~v~~yd~~~~--~W~~~~~mp 47 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNN------QPTNSVEVYDPETN--TWEELPPMP 47 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTS------SBEEEEEEEETTTT--EEEEEEEES
T ss_pred CCccCEEEEECCEEEEEeeecccC------ceeeeEEEEeCCCC--EEEEcCCCC
Confidence 478899999999999999999843 57889999999999 999999987
No 32
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=99.08 E-value=6.2e-11 Score=106.56 Aligned_cols=165 Identities=16% Similarity=0.193 Sum_probs=120.6
Q ss_pred CCCCEeecCCCC-------ccccccCCeeEEEeCC--EEEEEcCcCCCCCCCCCCCCCcccccceeEecccCCCCCCCcC
Q 021080 75 LRDLWITLPVLP-------SKIRHLAHFGVVSTAG--KLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRGFTSCRK 145 (317)
Q Consensus 75 ~~~~W~~~~~~p-------~~~~~r~~~~~~~~~~--~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~G~~~~~~ 145 (317)
.+-+|.++++-. ..|+.|.+|.++...+ .||+.||.++. +
T Consensus 237 y~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~-------------------------------~ 285 (723)
T KOG2437|consen 237 YKPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGT-------------------------------Q 285 (723)
T ss_pred ccccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcccc-------------------------------h
Confidence 355787765433 3356699999997765 89999999763 3
Q ss_pred CCceeEEeeCCCCceeeC---CCCCccCCCceEEEEECC--EEEEEec-----------CceeEEEEeCCCCcEEeccCC
Q 021080 146 SISQAEMYDPEKDVWVPI---PDLHRTHNSACTGVVIGG--KVHVLHK-----------GLSTVQVLDHMGLGWTVEDYG 209 (317)
Q Consensus 146 ~~~~~~~yd~~t~~W~~~---~~~p~~~r~~~~~~~~~g--~lyv~gG-----------~~~~v~~yd~~~~~W~~~~~~ 209 (317)
.+.+.|.|+...+.|..+ ...|.. |.-|..|..-. |+|++|. ..+++++||..++.|..+.--
T Consensus 286 ~l~DFW~Y~v~e~~W~~iN~~t~~PG~-RsCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~d 364 (723)
T KOG2437|consen 286 DLADFWAYSVKENQWTCINRDTEGPGA-RSCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSED 364 (723)
T ss_pred hHHHHHhhcCCcceeEEeecCCCCCcc-hhhhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEeccc
Confidence 467888899999999987 346666 87777776544 8999997 346899999999999877522
Q ss_pred c-----c----CCcEEEEcCe--EEEEeC----------cEEEEecCCc--eEEEecccc--------ccccccEEEEEE
Q 021080 210 W-----L----QGPMAIVHDS--VYLMSH----------GLIIKQHRDV--RKVVASASE--------FRRRIGFAMIGM 258 (317)
Q Consensus 210 ~-----~----~~~~~~~~~~--ly~~g~----------~~~~~yd~~~--W~~v~~~~~--------~~~r~~~~~~~~ 258 (317)
. | .+.+++.+++ +|++|| +.+|.|+.+. |..+..-.. ...|.++.|-.+
T Consensus 365 t~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr~~~~~e~~f~GLYaf~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~ 444 (723)
T KOG2437|consen 365 TAADGGPKLVFDHQMCVDSEKHMIYVFGGRILTCNEPQFSGLYAFNCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFH 444 (723)
T ss_pred ccccCCcceeecceeeEecCcceEEEecCeeccCCCccccceEEEecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhc
Confidence 1 1 5777887776 999998 5799999876 876552221 145566555444
Q ss_pred --CCeEEEEeCcccC
Q 021080 259 --GDDIYVIGGVIGP 271 (317)
Q Consensus 259 --~~~lyv~GG~~~~ 271 (317)
+.++|++||....
T Consensus 445 ~~n~~ly~fggq~s~ 459 (723)
T KOG2437|consen 445 SKNRCLYVFGGQRSK 459 (723)
T ss_pred CCCCeEEeccCcccc
Confidence 6689999986654
No 33
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=99.02 E-value=2.8e-10 Score=71.58 Aligned_cols=46 Identities=26% Similarity=0.619 Sum_probs=41.1
Q ss_pred cCCeeEEEeCCEEEEEcCcCCCCCCCCCCCCCcccccceeEecccCCCCCCCcCCCceeEEeeCCCCceeeCCCCC
Q 021080 92 LAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRGFTSCRKSISQAEMYDPEKDVWVPIPDLH 167 (317)
Q Consensus 92 r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~G~~~~~~~~~~~~~yd~~t~~W~~~~~~p 167 (317)
|.++++++++++|||+||.+.. ....+++++||+++++|+.+++||
T Consensus 2 R~~~~~~~~~~~iyv~GG~~~~------------------------------~~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 2 RSGHAAVVVGNKIYVIGGYDGN------------------------------NQPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp BBSEEEEEETTEEEEEEEBEST------------------------------SSBEEEEEEEETTTTEEEEEEEES
T ss_pred CccCEEEEECCEEEEEeeeccc------------------------------CceeeeEEEEeCCCCEEEEcCCCC
Confidence 8899999999999999998641 456799999999999999999886
No 34
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.91 E-value=3.1e-09 Score=67.39 Aligned_cols=48 Identities=25% Similarity=0.473 Sum_probs=40.8
Q ss_pred CCeEEEEeCcccCCCCceecccCcceeEeecCCCCCceeecccCCCCCCceeeeeE
Q 021080 259 GDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAERPTWRQVSPMTRCRGTILGCTQ 314 (317)
Q Consensus 259 ~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~~~~W~~~~~~p~~~~~~~~~~~ 314 (317)
+++|||+||...... ...+++++||++++ +|++++++|.+|.+ |++++
T Consensus 1 g~~~~vfGG~~~~~~-----~~~nd~~~~~~~~~--~W~~~~~~P~~R~~-h~~~~ 48 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGG-----TRLNDVWVFDLDTN--TWTRIGDLPPPRSG-HTATV 48 (49)
T ss_pred CCEEEEECCcCCCCC-----CEecCEEEEECCCC--EEEECCCCCCCccc-eEEEE
Confidence 589999999984221 47899999999999 99999999999999 67665
No 35
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.91 E-value=3.6e-09 Score=67.10 Aligned_cols=49 Identities=29% Similarity=0.487 Sum_probs=40.3
Q ss_pred ccccEEEEEECCeEEEEeCcccCCCCceecccCcceeEeecCCCCCceeecccCC
Q 021080 249 RRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAERPTWRQVSPMT 303 (317)
Q Consensus 249 ~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~~~~W~~~~~~p 303 (317)
+|.+|++++++++|||+||...... ....+++++||++++ +|+++++||
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~----~~~~~~v~~~d~~t~--~W~~~~~~g 49 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNG----GSSSNDVWVFDTETN--QWTELSPMG 49 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCC----CcccceeEEEECCCC--EEeecCCCC
Confidence 4788999999999999999911111 147889999999999 999999875
No 36
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.89 E-value=2.5e-09 Score=67.82 Aligned_cols=48 Identities=25% Similarity=0.623 Sum_probs=31.5
Q ss_pred ccccEEEEEE-CCeEEEEeCcccCCCCceecccCcceeEeecCCCCCceeecccCCC
Q 021080 249 RRIGFAMIGM-GDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAERPTWRQVSPMTR 304 (317)
Q Consensus 249 ~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~~~~W~~~~~~p~ 304 (317)
+|.+|+++.+ +++|||+||.+..+ ...+++++||++++ +|++++++|.
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~------~~~~d~~~~d~~~~--~W~~~~~~P~ 49 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSG------SPLNDLWIFDIETN--TWTRLPSMPS 49 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-T------EE---EEEEETTTT--EEEE--SS--
T ss_pred CcceEEEEEEeCCeEEEECCCCCCC------cccCCEEEEECCCC--EEEECCCCCC
Confidence 4788898888 58999999998875 47899999999999 9999988874
No 37
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.85 E-value=1e-08 Score=65.03 Aligned_cols=48 Identities=21% Similarity=0.399 Sum_probs=39.9
Q ss_pred cCCeeEEEeCCEEEEEcCcCCCCCCCCCCCCCcccccceeEecccCCCCCCCcCCCceeEEeeCCCCceeeCCCCC
Q 021080 92 LAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRGFTSCRKSISQAEMYDPEKDVWVPIPDLH 167 (317)
Q Consensus 92 r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~G~~~~~~~~~~~~~yd~~t~~W~~~~~~p 167 (317)
|.+|++++++++|||+||.... ......+++++||+++++|+.+++|+
T Consensus 2 r~~hs~~~~~~kiyv~GG~~~~----------------------------~~~~~~~~v~~~d~~t~~W~~~~~~g 49 (49)
T PF07646_consen 2 RYGHSAVVLDGKIYVFGGYGTD----------------------------NGGSSSNDVWVFDTETNQWTELSPMG 49 (49)
T ss_pred ccceEEEEECCEEEEECCcccC----------------------------CCCcccceeEEEECCCCEEeecCCCC
Confidence 8899999999999999998111 02445789999999999999998875
No 38
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=98.83 E-value=3.1e-06 Score=72.29 Aligned_cols=202 Identities=11% Similarity=0.033 Sum_probs=119.6
Q ss_pred CcCceEEEEEeCCCCceEEEeCCCCCEeecCCCCccccccCCeeEEEeCCEEEEEcCcCCCCCCCCCCCCCcccccceeE
Q 021080 53 SSENLLCVCAFDPENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWS 132 (317)
Q Consensus 53 ~~~~~l~v~gg~~~~~~~~yd~~~~~W~~~~~~p~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~ 132 (317)
..++.|++... ..+..+||.|++|..+++.+.. +... +...+.+ |++... + ..+-+..
T Consensus 3 sCnGLlc~~~~---~~~~V~NP~T~~~~~LP~~~~~---~~~~-----~~~~~~~-G~d~~~----~------~YKVv~~ 60 (230)
T TIGR01640 3 PCDGLICFSYG---KRLVVWNPSTGQSRWLPTPKSR---RSNK-----ESDTYFL-GYDPIE----K------QYKVLCF 60 (230)
T ss_pred ccceEEEEecC---CcEEEECCCCCCEEecCCCCCc---cccc-----ccceEEE-eecccC----C------cEEEEEE
Confidence 34667765543 6889999999999999765432 1110 0112333 232211 1 2222333
Q ss_pred ecccCCCCCCCcCCCceeEEeeCCCCceeeCCCCCccCCCceEEEEECCEEEEEecC----c-eeEEEEeCCCCcEEe-c
Q 021080 133 YDPVTRGFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHNSACTGVVIGGKVHVLHKG----L-STVQVLDHMGLGWTV-E 206 (317)
Q Consensus 133 ~d~~~~G~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~r~~~~~~~~~g~lyv~gG~----~-~~v~~yd~~~~~W~~-~ 206 (317)
++... ......+++|+..+++|+.+...+........++.++|.||++... . ..|.+||..+++|+. +
T Consensus 61 ~~~~~------~~~~~~~~Vys~~~~~Wr~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i 134 (230)
T TIGR01640 61 SDRSG------NRNQSEHQVYTLGSNSWRTIECSPPHHPLKSRGVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFI 134 (230)
T ss_pred EeecC------CCCCccEEEEEeCCCCccccccCCCCccccCCeEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeee
Confidence 32211 1124688999999999999875433211122388999999999751 1 279999999999995 6
Q ss_pred cCCcc------CCcEEEEcCeEEEEeC------cEEEEec---CCceEEEeccccc-ccc----ccEEEEEECCeEEEEe
Q 021080 207 DYGWL------QGPMAIVHDSVYLMSH------GLIIKQH---RDVRKVVASASEF-RRR----IGFAMIGMGDDIYVIG 266 (317)
Q Consensus 207 ~~~~~------~~~~~~~~~~ly~~g~------~~~~~yd---~~~W~~v~~~~~~-~~r----~~~~~~~~~~~lyv~G 266 (317)
+.+.. ....+.++|+|.++.. -++|..+ .+.|++.-.++.+ ..+ .....+..+|+|++..
T Consensus 135 ~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~ 214 (230)
T TIGR01640 135 PLPCGNSDSVDYLSLINYKGKLAVLKQKKDTNNFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCC 214 (230)
T ss_pred ecCccccccccceEEEEECCEEEEEEecCCCCcEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEe
Confidence 53322 2345677899988753 2566664 2239987666521 111 1133455678888876
Q ss_pred CcccCCCCceecccCcceeEeecCCC
Q 021080 267 GVIGPDRWNWDIKPMSDVDVLTVGAE 292 (317)
Q Consensus 267 G~~~~~~~~~~~~~~~~v~~yd~~~~ 292 (317)
... . ..-+..||++++
T Consensus 215 ~~~-~---------~~~~~~y~~~~~ 230 (230)
T TIGR01640 215 EDE-N---------PFYIFYYNVGEN 230 (230)
T ss_pred CCC-C---------ceEEEEEeccCC
Confidence 531 1 114788999874
No 39
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.83 E-value=1.1e-08 Score=64.91 Aligned_cols=49 Identities=31% Similarity=0.536 Sum_probs=41.2
Q ss_pred CCEEEEEcCcCCCCCCCCCCCCCcccccceeEecccCCCCCCCcCCCceeEEeeCCCCceeeCCCCCccCCCceEEEEE
Q 021080 101 AGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRGFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHNSACTGVVI 179 (317)
Q Consensus 101 ~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~G~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~r~~~~~~~~ 179 (317)
+++|||+||.... .....+++++||+.+++|++++++|.+ |..|+++++
T Consensus 1 g~~~~vfGG~~~~-----------------------------~~~~~nd~~~~~~~~~~W~~~~~~P~~-R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDD-----------------------------GGTRLNDVWVFDLDTNTWTRIGDLPPP-RSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCC-----------------------------CCCEecCEEEEECCCCEEEECCCCCCC-ccceEEEEC
Confidence 5899999998631 144578999999999999999999999 999988763
No 40
>smart00612 Kelch Kelch domain.
Probab=98.77 E-value=1.5e-08 Score=63.42 Aligned_cols=35 Identities=34% Similarity=0.749 Sum_probs=31.6
Q ss_pred CCceeEEeeCCCCceeeCCCCCccCCCceEEEEECC
Q 021080 146 SISQAEMYDPEKDVWVPIPDLHRTHNSACTGVVIGG 181 (317)
Q Consensus 146 ~~~~~~~yd~~t~~W~~~~~~p~~~r~~~~~~~~~g 181 (317)
..+++++||+++++|+.+++|+.+ |..+++++++|
T Consensus 13 ~~~~v~~yd~~~~~W~~~~~~~~~-r~~~~~~~~~g 47 (47)
T smart00612 13 RLKSVEVYDPETNKWTPLPSMPTP-RSGHGVAVING 47 (47)
T ss_pred eeeeEEEECCCCCeEccCCCCCCc-cccceEEEeCC
Confidence 468899999999999999999999 99998888775
No 41
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.77 E-value=9.2e-09 Score=65.23 Aligned_cols=46 Identities=20% Similarity=0.490 Sum_probs=30.2
Q ss_pred cCCeeEEEe-CCEEEEEcCcCCCCCCCCCCCCCcccccceeEecccCCCCCCCcCCCceeEEeeCCCCceeeCCCCC
Q 021080 92 LAHFGVVST-AGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRGFTSCRKSISQAEMYDPEKDVWVPIPDLH 167 (317)
Q Consensus 92 r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~G~~~~~~~~~~~~~yd~~t~~W~~~~~~p 167 (317)
|..|+++.+ +++|||+||.+.. ....+++++||+++++|+++++||
T Consensus 2 R~~h~~~~~~~~~i~v~GG~~~~------------------------------~~~~~d~~~~d~~~~~W~~~~~~P 48 (49)
T PF13418_consen 2 RYGHSAVSIGDNSIYVFGGRDSS------------------------------GSPLNDLWIFDIETNTWTRLPSMP 48 (49)
T ss_dssp -BS-EEEEE-TTEEEEE--EEE-------------------------------TEE---EEEEETTTTEEEE--SS-
T ss_pred cceEEEEEEeCCeEEEECCCCCC------------------------------CcccCCEEEEECCCCEEEECCCCC
Confidence 888998888 5899999998642 245789999999999999998887
No 42
>smart00612 Kelch Kelch domain.
Probab=98.74 E-value=1.5e-08 Score=63.44 Aligned_cols=46 Identities=26% Similarity=0.538 Sum_probs=38.9
Q ss_pred eEEEEeCcccCCCCceecccCcceeEeecCCCCCceeecccCCCCCCceeeeeEee
Q 021080 261 DIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAERPTWRQVSPMTRCRGTILGCTQLR 316 (317)
Q Consensus 261 ~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~~~~W~~~~~~p~~~~~~~~~~~~~ 316 (317)
+||++||.... ...+++++||++++ +|+.+++||.+|.. +++++++
T Consensus 1 ~iyv~GG~~~~-------~~~~~v~~yd~~~~--~W~~~~~~~~~r~~-~~~~~~~ 46 (47)
T smart00612 1 KIYVVGGFDGG-------QRLKSVEVYDPETN--KWTPLPSMPTPRSG-HGVAVIN 46 (47)
T ss_pred CEEEEeCCCCC-------ceeeeEEEECCCCC--eEccCCCCCCcccc-ceEEEeC
Confidence 58999998653 35789999999999 99999999999998 6777653
No 43
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=98.65 E-value=8.5e-09 Score=93.05 Aligned_cols=219 Identities=11% Similarity=0.096 Sum_probs=137.5
Q ss_pred CceEEEEEeC----CCCceEEEeCCCCCEeecCCCCccccccCCeeEEEeCC--EEEEEcCcCCCCCCCCCCCCCccccc
Q 021080 55 ENLLCVCAFD----PENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAG--KLFVLGGGSDAVDPLTGDQDGSFATN 128 (317)
Q Consensus 55 ~~~l~v~gg~----~~~~~~~yd~~~~~W~~~~~~p~~~~~r~~~~~~~~~~--~iyv~GG~~~~~~~~~~~~~~~~~~~ 128 (317)
.+.+|+.||- ...++|.|+...+.|..+..-...|..|..|-++.... ++|+.|-+-+... .+
T Consensus 272 ~~CiYLYGGWdG~~~l~DFW~Y~v~e~~W~~iN~~t~~PG~RsCHRMVid~S~~KLYLlG~Y~~sS~-----------r~ 340 (723)
T KOG2437|consen 272 TECVYLYGGWDGTQDLADFWAYSVKENQWTCINRDTEGPGARSCHRMVIDISRRKLYLLGRYLDSSV-----------RN 340 (723)
T ss_pred CcEEEEecCcccchhHHHHHhhcCCcceeEEeecCCCCCcchhhhhhhhhhhHhHHhhhhhcccccc-----------cc
Confidence 5689999993 37899999999999998754333334598898887765 8999998754310 00
Q ss_pred ceeEecccCCCCCCCcCCCceeEEeeCCCCceeeCC------CCCccCCCceEEEEECCE--EEEEec--------Ccee
Q 021080 129 EVWSYDPVTRGFTSCRKSISQAEMYDPEKDVWVPIP------DLHRTHNSACTGVVIGGK--VHVLHK--------GLST 192 (317)
Q Consensus 129 ~~~~~d~~~~G~~~~~~~~~~~~~yd~~t~~W~~~~------~~p~~~r~~~~~~~~~g~--lyv~gG--------~~~~ 192 (317)
....-++.|+||..+++|.-+. .=|.. .+.|+.++...+ |||+|| ...-
T Consensus 341 --------------~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~-vfDHqM~Vd~~k~~iyVfGGr~~~~~e~~f~G 405 (723)
T KOG2437|consen 341 --------------SKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKL-VFDHQMCVDSEKHMIYVFGGRILTCNEPQFSG 405 (723)
T ss_pred --------------ccccccceEEEecCCceeEEecccccccCCcce-eecceeeEecCcceEEEecCeeccCCCccccc
Confidence 0112478999999999999773 23555 778888888877 999999 2346
Q ss_pred EEEEeCCCCcEEeccCCcc-C------------C--cEEEEcCeEEEEeCc-------EEEEecC--CceEEEecccc--
Q 021080 193 VQVLDHMGLGWTVEDYGWL-Q------------G--PMAIVHDSVYLMSHG-------LIIKQHR--DVRKVVASASE-- 246 (317)
Q Consensus 193 v~~yd~~~~~W~~~~~~~~-~------------~--~~~~~~~~ly~~g~~-------~~~~yd~--~~W~~v~~~~~-- 246 (317)
++.||.+...|........ . + -++.-++.+|++||+ ..+.|+. +.=..++....
T Consensus 406 LYaf~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s~~El~L~f~y~I~~E~~~~~s~~~k~d 485 (723)
T KOG2437|consen 406 LYAFNCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRSKTELNLFFSYDIDSEHVDIISDGTKKD 485 (723)
T ss_pred eEEEecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcccceEEeehhcceeccccchhhhccCcCc
Confidence 8999999999986653221 1 1 122235678999872 2334432 22111111000
Q ss_pred --c-cccccE--EE-EEECCeEEEEeCcccCCCCceecccCcceeEeecCCCCCceeecccC
Q 021080 247 --F-RRRIGF--AM-IGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAERPTWRQVSPM 302 (317)
Q Consensus 247 --~-~~r~~~--~~-~~~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~~~~W~~~~~~ 302 (317)
. ..++.. ++ -.-..+|.+.-|+....... +....+..|+|+..++ .|.-+..+
T Consensus 486 sS~~pS~~f~qRs~~dp~~~~i~~~~G~~~~~~~~-e~~~rns~wi~~i~~~--~w~cI~~I 544 (723)
T KOG2437|consen 486 SSMVPSTGFTQRATIDPELNEIHVLSGLSKDKEKR-EENVRNSFWIYDIVRN--SWSCIYKI 544 (723)
T ss_pred cccCCCcchhhhcccCCCCcchhhhcccchhccCc-cccccCcEEEEEeccc--chhhHhhh
Confidence 0 011111 11 11245788888876543211 1236778999999998 99766443
No 44
>PLN02772 guanylate kinase
Probab=98.37 E-value=3.2e-06 Score=76.36 Aligned_cols=80 Identities=16% Similarity=0.228 Sum_probs=62.9
Q ss_pred ccCCeeEEEeCCEEEEEcCcCCCCCCCCCCCCCcccccceeEecccCCCCCCCcCCCceeEEeeCCCCceeeC---CCCC
Q 021080 91 HLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRGFTSCRKSISQAEMYDPEKDVWVPI---PDLH 167 (317)
Q Consensus 91 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~G~~~~~~~~~~~~~yd~~t~~W~~~---~~~p 167 (317)
++..++++++++++||+||.++. ....+.+++||..|++|..- +..|
T Consensus 24 ~~~~~tav~igdk~yv~GG~~d~------------------------------~~~~~~v~i~D~~t~~W~~P~V~G~~P 73 (398)
T PLN02772 24 PKNRETSVTIGDKTYVIGGNHEG------------------------------NTLSIGVQILDKITNNWVSPIVLGTGP 73 (398)
T ss_pred CCCcceeEEECCEEEEEcccCCC------------------------------ccccceEEEEECCCCcEecccccCCCC
Confidence 47889999999999999997642 22357899999999999865 5778
Q ss_pred ccCCCceEEEEE-CCEEEEEec---CceeEEEEeCCCC
Q 021080 168 RTHNSACTGVVI-GGKVHVLHK---GLSTVQVLDHMGL 201 (317)
Q Consensus 168 ~~~r~~~~~~~~-~g~lyv~gG---~~~~v~~yd~~~~ 201 (317)
.+ |.+|+++++ +++|+|+++ ...++|.+...|.
T Consensus 74 ~~-r~GhSa~v~~~~rilv~~~~~~~~~~~w~l~~~t~ 110 (398)
T PLN02772 74 KP-CKGYSAVVLNKDRILVIKKGSAPDDSIWFLEVDTP 110 (398)
T ss_pred CC-CCcceEEEECCceEEEEeCCCCCccceEEEEcCCH
Confidence 88 999999987 679999987 3355666655443
No 45
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.34 E-value=3.9e-07 Score=57.05 Aligned_cols=43 Identities=28% Similarity=0.456 Sum_probs=36.7
Q ss_pred CCCCcHHHHHHHhccCCCCchhhhhhcCHhHHHhhcChhhHHH
Q 021080 5 IEGLPDAVALRCLARVPFFLHPKLELVSRSWRAAIRSPELFKA 47 (317)
Q Consensus 5 ~~~Lp~d~~~~~l~r~p~~~~~~~~~v~k~w~~l~~s~~~~~~ 47 (317)
|..||+|++.+||+.++..++.+++.|||+|+.++.++.+.+.
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~~ 43 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWRR 43 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHHH
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhhh
Confidence 5789999999999999999999999999999999988765543
No 46
>PF13854 Kelch_5: Kelch motif
Probab=98.17 E-value=4.5e-06 Score=50.79 Aligned_cols=22 Identities=18% Similarity=0.336 Sum_probs=20.3
Q ss_pred ccCCeeEEEeCCEEEEEcCcCC
Q 021080 91 HLAHFGVVSTAGKLFVLGGGSD 112 (317)
Q Consensus 91 ~r~~~~~~~~~~~iyv~GG~~~ 112 (317)
+|.+|++++++++|||+||...
T Consensus 4 ~R~~hs~~~~~~~iyi~GG~~~ 25 (42)
T PF13854_consen 4 PRYGHSAVVVGNNIYIFGGYSG 25 (42)
T ss_pred CccceEEEEECCEEEEEcCccC
Confidence 5999999999999999999873
No 47
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=98.15 E-value=4.5e-05 Score=64.92 Aligned_cols=142 Identities=13% Similarity=0.142 Sum_probs=88.6
Q ss_pred ceEEEeCCCCCEeecCCCCccccccCCeeEEEeCCEEEEEcCcCCCCCCCCCCCCCcccccceeEecccCCCCCCCcCCC
Q 021080 68 LWQLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRGFTSCRKSI 147 (317)
Q Consensus 68 ~~~~yd~~~~~W~~~~~~p~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~G~~~~~~~~ 147 (317)
.-..||+.+++++.+...-.. .+++++ ..-+|+++++||..+. .
T Consensus 47 ~s~~yD~~tn~~rpl~v~td~--FCSgg~-~L~dG~ll~tGG~~~G---------------------------------~ 90 (243)
T PF07250_consen 47 HSVEYDPNTNTFRPLTVQTDT--FCSGGA-FLPDGRLLQTGGDNDG---------------------------------N 90 (243)
T ss_pred EEEEEecCCCcEEeccCCCCC--cccCcC-CCCCCCEEEeCCCCcc---------------------------------c
Confidence 346899999999988543332 233333 3457899999997531 2
Q ss_pred ceeEEeeCCC----CceeeCC-CCCccCCCceEEEE-ECCEEEEEecCceeEEEEeCC-CC-----cEEeccCC------
Q 021080 148 SQAEMYDPEK----DVWVPIP-DLHRTHNSACTGVV-IGGKVHVLHKGLSTVQVLDHM-GL-----GWTVEDYG------ 209 (317)
Q Consensus 148 ~~~~~yd~~t----~~W~~~~-~~p~~~r~~~~~~~-~~g~lyv~gG~~~~v~~yd~~-~~-----~W~~~~~~------ 209 (317)
+.+..|++.+ ..|.+.+ .|..+ |..++++. -||+++|+||..+..+.|-+. .. .|..+...
T Consensus 91 ~~ir~~~p~~~~~~~~w~e~~~~m~~~-RWYpT~~~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~ 169 (243)
T PF07250_consen 91 KAIRIFTPCTSDGTCDWTESPNDMQSG-RWYPTATTLPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPN 169 (243)
T ss_pred cceEEEecCCCCCCCCceECcccccCC-CccccceECCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCcc
Confidence 3444555544 6798875 58888 87777664 589999999944433344343 21 12222211
Q ss_pred -ccCCcEEEEcCeEEEEeCcEEEEecCCc---eEEEecccc
Q 021080 210 -WLQGPMAIVHDSVYLMSHGLIIKQHRDV---RKVVASASE 246 (317)
Q Consensus 210 -~~~~~~~~~~~~ly~~g~~~~~~yd~~~---W~~v~~~~~ 246 (317)
..+.....-+|+||++....-..||.++ .+.++.+|.
T Consensus 170 nlYP~~~llPdG~lFi~an~~s~i~d~~~n~v~~~lP~lPg 210 (243)
T PF07250_consen 170 NLYPFVHLLPDGNLFIFANRGSIIYDYKTNTVVRTLPDLPG 210 (243)
T ss_pred ccCceEEEcCCCCEEEEEcCCcEEEeCCCCeEEeeCCCCCC
Confidence 1133334458999999986666666554 478888885
No 48
>PF13854 Kelch_5: Kelch motif
Probab=98.13 E-value=6.2e-06 Score=50.17 Aligned_cols=38 Identities=29% Similarity=0.573 Sum_probs=33.0
Q ss_pred cccccEEEEEECCeEEEEeCccc-CCCCceecccCcceeEeecCC
Q 021080 248 RRRIGFAMIGMGDDIYVIGGVIG-PDRWNWDIKPMSDVDVLTVGA 291 (317)
Q Consensus 248 ~~r~~~~~~~~~~~lyv~GG~~~-~~~~~~~~~~~~~v~~yd~~~ 291 (317)
.+|.+|+++.++++||++||... .. ...+++|+||+.+
T Consensus 3 ~~R~~hs~~~~~~~iyi~GG~~~~~~------~~~~d~~~l~l~s 41 (42)
T PF13854_consen 3 SPRYGHSAVVVGNNIYIFGGYSGNNN------SYSNDLYVLDLPS 41 (42)
T ss_pred CCccceEEEEECCEEEEEcCccCCCC------CEECcEEEEECCC
Confidence 67999999999999999999985 32 5789999999875
No 49
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=98.08 E-value=0.00022 Score=60.73 Aligned_cols=140 Identities=11% Similarity=0.171 Sum_probs=89.6
Q ss_pred CceeEEeeCCCCceeeCCCCCccCCCceE--EEEECCEEEEEec---CceeEEEEeCCC----CcEEeccCC-cc---CC
Q 021080 147 ISQAEMYDPEKDVWVPIPDLHRTHNSACT--GVVIGGKVHVLHK---GLSTVQVLDHMG----LGWTVEDYG-WL---QG 213 (317)
Q Consensus 147 ~~~~~~yd~~t~~W~~~~~~p~~~r~~~~--~~~~~g~lyv~gG---~~~~v~~yd~~~----~~W~~~~~~-~~---~~ 213 (317)
......||+.+++++.+.-.-.. .|+ +..-||++.+.|| ....+..|++.+ ..|.+.... .. .+
T Consensus 45 ~a~s~~yD~~tn~~rpl~v~td~---FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYp 121 (243)
T PF07250_consen 45 PAHSVEYDPNTNTFRPLTVQTDT---FCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYP 121 (243)
T ss_pred eEEEEEEecCCCcEEeccCCCCC---cccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccc
Confidence 45677899999999987644332 333 3456899999999 456788898865 569877643 22 33
Q ss_pred cEEE-EcCeEEEEeCcE--EEEecCCc--------eEEEecccc--ccccccEEEEEECCeEEEEeCcccCCCCceeccc
Q 021080 214 PMAI-VHDSVYLMSHGL--IIKQHRDV--------RKVVASASE--FRRRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKP 280 (317)
Q Consensus 214 ~~~~-~~~~ly~~g~~~--~~~yd~~~--------W~~v~~~~~--~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~ 280 (317)
++.. -+|+++++||.. .+.|-++. |..+..... +..-+-+..+.=+|+||+++..
T Consensus 122 T~~~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~------------ 189 (243)
T PF07250_consen 122 TATTLPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANR------------ 189 (243)
T ss_pred cceECCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcC------------
Confidence 4443 489999999943 33443432 222222111 1122334444558999999874
Q ss_pred CcceeEeecCCCCCce-eecccCCCC
Q 021080 281 MSDVDVLTVGAERPTW-RQVSPMTRC 305 (317)
Q Consensus 281 ~~~v~~yd~~~~~~~W-~~~~~~p~~ 305 (317)
.-.+||+.++ ++ +.++.+|..
T Consensus 190 --~s~i~d~~~n--~v~~~lP~lPg~ 211 (243)
T PF07250_consen 190 --GSIIYDYKTN--TVVRTLPDLPGG 211 (243)
T ss_pred --CcEEEeCCCC--eEEeeCCCCCCC
Confidence 2357999998 77 788888764
No 50
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.07 E-value=1.4e-06 Score=54.72 Aligned_cols=44 Identities=32% Similarity=0.508 Sum_probs=36.9
Q ss_pred CCCCcHHHHHHHhccCCCCchhhhhhcCHhHHHhhcChhhHHHH
Q 021080 5 IEGLPDAVALRCLARVPFFLHPKLELVSRSWRAAIRSPELFKAR 48 (317)
Q Consensus 5 ~~~Lp~d~~~~~l~r~p~~~~~~~~~v~k~w~~l~~s~~~~~~~ 48 (317)
|..||+|++.+|+.+++..++.+++.|||+|+.++.++.+....
T Consensus 3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~~ 46 (48)
T PF00646_consen 3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKKI 46 (48)
T ss_dssp HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHH
T ss_pred HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHHH
Confidence 56899999999999999999999999999999999998766543
No 51
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=98.02 E-value=0.0015 Score=59.08 Aligned_cols=37 Identities=19% Similarity=0.350 Sum_probs=33.5
Q ss_pred CCCCcHHHHHHHhccCC-CCchhhhhhcCHhHHHhhcC
Q 021080 5 IEGLPDAVALRCLARVP-FFLHPKLELVSRSWRAAIRS 41 (317)
Q Consensus 5 ~~~Lp~d~~~~~l~r~p-~~~~~~~~~v~k~w~~l~~s 41 (317)
|+.||+||+..|..|+| ..++.+++.||++||..+..
T Consensus 4 Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~ 41 (373)
T PLN03215 4 WSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG 41 (373)
T ss_pred hhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence 78999999999999995 77889999999999997664
No 52
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=97.98 E-value=4.3e-06 Score=50.45 Aligned_cols=38 Identities=34% Similarity=0.559 Sum_probs=35.5
Q ss_pred CcHHHHHHHhccCCCCchhhhhhcCHhHHHhhcChhhH
Q 021080 8 LPDAVALRCLARVPFFLHPKLELVSRSWRAAIRSPELF 45 (317)
Q Consensus 8 Lp~d~~~~~l~r~p~~~~~~~~~v~k~w~~l~~s~~~~ 45 (317)
||+|++.+|+.+++..++.+++.|||+|+.++.++++.
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~ 38 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFW 38 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhh
Confidence 79999999999999999999999999999999887654
No 53
>PLN02772 guanylate kinase
Probab=97.96 E-value=5.5e-05 Score=68.46 Aligned_cols=80 Identities=25% Similarity=0.306 Sum_probs=60.6
Q ss_pred cCCCceEEEEECCEEEEEec------CceeEEEEeCCCCcEEeccCCccCCcEEEEcCeEEEEeCcEEEEecCCceEEEe
Q 021080 169 THNSACTGVVIGGKVHVLHK------GLSTVQVLDHMGLGWTVEDYGWLQGPMAIVHDSVYLMSHGLIIKQHRDVRKVVA 242 (317)
Q Consensus 169 ~~r~~~~~~~~~g~lyv~gG------~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~ly~~g~~~~~~yd~~~W~~v~ 242 (317)
+ +..++++.+++++||+|| ..+.+++||+.+++|....-. +
T Consensus 24 ~-~~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~--------------------------------G 70 (398)
T PLN02772 24 P-KNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVL--------------------------------G 70 (398)
T ss_pred C-CCcceeEEECCEEEEEcccCCCccccceEEEEECCCCcEeccccc--------------------------------C
Confidence 5 677899999999999999 346899999999999976521 2
Q ss_pred ccccccccccEEEEEE-CCeEEEEeCcccCCCCceecccCcceeEeecCCC
Q 021080 243 SASEFRRRIGFAMIGM-GDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAE 292 (317)
Q Consensus 243 ~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~ 292 (317)
..| .+|.+|+++.+ +++|+||++-...+ +++|...+.+.
T Consensus 71 ~~P--~~r~GhSa~v~~~~rilv~~~~~~~~---------~~~w~l~~~t~ 110 (398)
T PLN02772 71 TGP--KPCKGYSAVVLNKDRILVIKKGSAPD---------DSIWFLEVDTP 110 (398)
T ss_pred CCC--CCCCcceEEEECCceEEEEeCCCCCc---------cceEEEEcCCH
Confidence 223 57888888888 68999998654442 36777666653
No 54
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=97.87 E-value=0.0014 Score=55.83 Aligned_cols=146 Identities=12% Similarity=0.106 Sum_probs=90.9
Q ss_pred ceeEEeeCCCCceeeCCCCCccC--CCc-eEEEEECC-----EEEEEec-----CceeEEEEeCCCCcEEeccCCcc---
Q 021080 148 SQAEMYDPEKDVWVPIPDLHRTH--NSA-CTGVVIGG-----KVHVLHK-----GLSTVQVLDHMGLGWTVEDYGWL--- 211 (317)
Q Consensus 148 ~~~~~yd~~t~~W~~~~~~p~~~--r~~-~~~~~~~g-----~lyv~gG-----~~~~v~~yd~~~~~W~~~~~~~~--- 211 (317)
..+.++||.|++|..+|+.+.+. ... ..+..++. |+..+.. ....+++|+..+++|+.+...+.
T Consensus 14 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~~~~~~~Vys~~~~~Wr~~~~~~~~~~ 93 (230)
T TIGR01640 14 KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNRNQSEHQVYTLGSNSWRTIECSPPHHP 93 (230)
T ss_pred CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCCCCCccEEEEEeCCCCccccccCCCCcc
Confidence 56889999999999997654420 111 12233332 4444432 23578999999999999874333
Q ss_pred -CCcEEEEcCeEEEEeC-------cEEEEecCCc--eEEEeccccccc--cccEEEEEECCeEEEEeCcccCCCCceecc
Q 021080 212 -QGPMAIVHDSVYLMSH-------GLIIKQHRDV--RKVVASASEFRR--RIGFAMIGMGDDIYVIGGVIGPDRWNWDIK 279 (317)
Q Consensus 212 -~~~~~~~~~~ly~~g~-------~~~~~yd~~~--W~~v~~~~~~~~--r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~ 279 (317)
....+.++|.+|-+.. ..+..||.++ |++.-++|.... .....++.++|+|.++.......
T Consensus 94 ~~~~~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~------- 166 (230)
T TIGR01640 94 LKSRGVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLPCGNSDSVDYLSLINYKGKLAVLKQKKDTN------- 166 (230)
T ss_pred ccCCeEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeeecCccccccccceEEEEECCEEEEEEecCCCC-------
Confidence 2236678999988853 1688999776 986334443111 22456788899999877643221
Q ss_pred cCcceeEee-cCCCCCceeecccCC
Q 021080 280 PMSDVDVLT-VGAERPTWRQVSPMT 303 (317)
Q Consensus 280 ~~~~v~~yd-~~~~~~~W~~~~~~p 303 (317)
.-+||+.+ .... +|+.+-.++
T Consensus 167 -~~~IWvl~d~~~~--~W~k~~~i~ 188 (230)
T TIGR01640 167 -NFDLWVLNDAGKQ--EWSKLFTVP 188 (230)
T ss_pred -cEEEEEECCCCCC--ceeEEEEEc
Confidence 13667665 3244 798764443
No 55
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.85 E-value=0.0051 Score=56.89 Aligned_cols=144 Identities=17% Similarity=0.145 Sum_probs=85.0
Q ss_pred cCceEEEEEeCCCCceEEEeCCCC--CEee-cCCCCcc----ccccCCeeEEEeCCEEEEEcCcCCCCCCCCCCCCCccc
Q 021080 54 SENLLCVCAFDPENLWQLYDPLRD--LWIT-LPVLPSK----IRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFA 126 (317)
Q Consensus 54 ~~~~l~v~gg~~~~~~~~yd~~~~--~W~~-~~~~p~~----~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~ 126 (317)
.++.||+... ...++++|..++ .|+. +..-... ...+...+.++.+++||+.+..
T Consensus 68 ~~~~vy~~~~--~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~---------------- 129 (394)
T PRK11138 68 AYNKVYAADR--AGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEK---------------- 129 (394)
T ss_pred ECCEEEEECC--CCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCC----------------
Confidence 4778888764 347899999876 4874 2221000 0012223456778899875431
Q ss_pred ccceeEecccCCCCCCCcCCCceeEEeeCCCC--ceeeCCCCCccCCCceEEEEECCEEEEEecCceeEEEEeCCCCc--
Q 021080 127 TNEVWSYDPVTRGFTSCRKSISQAEMYDPEKD--VWVPIPDLHRTHNSACTGVVIGGKVHVLHKGLSTVQVLDHMGLG-- 202 (317)
Q Consensus 127 ~~~~~~~d~~~~G~~~~~~~~~~~~~yd~~t~--~W~~~~~~p~~~r~~~~~~~~~g~lyv~gG~~~~v~~yd~~~~~-- 202 (317)
..+.++|.++. .|+.-.+ .. ...+.++.++++|+..+ ...+..+|+.+++
T Consensus 130 ---------------------g~l~ald~~tG~~~W~~~~~--~~--~~ssP~v~~~~v~v~~~-~g~l~ald~~tG~~~ 183 (394)
T PRK11138 130 ---------------------GQVYALNAEDGEVAWQTKVA--GE--ALSRPVVSDGLVLVHTS-NGMLQALNESDGAVK 183 (394)
T ss_pred ---------------------CEEEEEECCCCCCcccccCC--Cc--eecCCEEECCEEEEECC-CCEEEEEEccCCCEe
Confidence 24556666554 4764321 11 12234567889888654 4579999998876
Q ss_pred EEeccCCcc-----CCcEEEEcCeEEEEeC-cEEEEecCCc----eEEE
Q 021080 203 WTVEDYGWL-----QGPMAIVHDSVYLMSH-GLIIKQHRDV----RKVV 241 (317)
Q Consensus 203 W~~~~~~~~-----~~~~~~~~~~ly~~g~-~~~~~yd~~~----W~~v 241 (317)
|+.-...+. ..+-++.++.+|+... +.++.+|.++ |+.-
T Consensus 184 W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~ 232 (394)
T PRK11138 184 WTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQR 232 (394)
T ss_pred eeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEccCChhhheec
Confidence 886543221 1223445777777654 6788888765 9753
No 56
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.73 E-value=0.0025 Score=58.93 Aligned_cols=110 Identities=17% Similarity=0.141 Sum_probs=70.3
Q ss_pred EEEEECCEEEEEecCceeEEEEeCCCCc--EEeccCCccCCcEEEEcCeEEEEeC-cEEEEecCCc----eEEEeccccc
Q 021080 175 TGVVIGGKVHVLHKGLSTVQVLDHMGLG--WTVEDYGWLQGPMAIVHDSVYLMSH-GLIIKQHRDV----RKVVASASEF 247 (317)
Q Consensus 175 ~~~~~~g~lyv~gG~~~~v~~yd~~~~~--W~~~~~~~~~~~~~~~~~~ly~~g~-~~~~~yd~~~----W~~v~~~~~~ 247 (317)
..++.++++|+.+. ...+.++|.++++ |+.........+.++.++.+|+..+ +.++.+|.++ |+.-...|..
T Consensus 115 ~~~v~~~~v~v~~~-~g~l~ald~~tG~~~W~~~~~~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ 193 (394)
T PRK11138 115 GVTVAGGKVYIGSE-KGQVYALNAEDGEVAWQTKVAGEALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSL 193 (394)
T ss_pred ccEEECCEEEEEcC-CCEEEEEECCCCCCcccccCCCceecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcc
Confidence 45678899997543 5679999987764 9865433223334556888888765 6899999865 9886544321
Q ss_pred cccccEEEEEECCeEEEEeCcccCCCCceecccCcceeEeecCCCCCceee
Q 021080 248 RRRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAERPTWRQ 298 (317)
Q Consensus 248 ~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~~~~W~~ 298 (317)
..+...+-+..++.+|+..+ ...+..+|.++++..|+.
T Consensus 194 ~~~~~~sP~v~~~~v~~~~~-------------~g~v~a~d~~~G~~~W~~ 231 (394)
T PRK11138 194 TLRGESAPATAFGGAIVGGD-------------NGRVSAVLMEQGQLIWQQ 231 (394)
T ss_pred cccCCCCCEEECCEEEEEcC-------------CCEEEEEEccCChhhhee
Confidence 12222233445677776433 125677888888777874
No 57
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.69 E-value=0.01 Score=50.41 Aligned_cols=180 Identities=17% Similarity=0.170 Sum_probs=107.3
Q ss_pred cCceEEEEEeCCCCceEEEeCCCCC--EeecCCCCccccccCCeeEEEeCCEEEEEcCcCCCCCCCCCCCCCccccccee
Q 021080 54 SENLLCVCAFDPENLWQLYDPLRDL--WITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVW 131 (317)
Q Consensus 54 ~~~~l~v~gg~~~~~~~~yd~~~~~--W~~~~~~p~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~ 131 (317)
.++.+|+.. ....++++|..+++ |+.-. +. ......+..++.||+....
T Consensus 35 ~~~~v~~~~--~~~~l~~~d~~tG~~~W~~~~--~~----~~~~~~~~~~~~v~v~~~~--------------------- 85 (238)
T PF13360_consen 35 DGGRVYVAS--GDGNLYALDAKTGKVLWRFDL--PG----PISGAPVVDGGRVYVGTSD--------------------- 85 (238)
T ss_dssp ETTEEEEEE--TTSEEEEEETTTSEEEEEEEC--SS----CGGSGEEEETTEEEEEETT---------------------
T ss_pred eCCEEEEEc--CCCEEEEEECCCCCEEEEeec--cc----cccceeeecccccccccce---------------------
Confidence 366777774 35799999998875 65532 32 1222247888999888732
Q ss_pred EecccCCCCCCCcCCCceeEEeeCCCC--cee-eCCCCCcc-CCCceEEEEECCEEEEEecCceeEEEEeCCCCc--EEe
Q 021080 132 SYDPVTRGFTSCRKSISQAEMYDPEKD--VWV-PIPDLHRT-HNSACTGVVIGGKVHVLHKGLSTVQVLDHMGLG--WTV 205 (317)
Q Consensus 132 ~~d~~~~G~~~~~~~~~~~~~yd~~t~--~W~-~~~~~p~~-~r~~~~~~~~~g~lyv~gG~~~~v~~yd~~~~~--W~~ 205 (317)
..+..+|.++. .|+ .....+.. .......++.++.+|+... ...+.++|+.+++ |..
T Consensus 86 ----------------~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~l~~~d~~tG~~~w~~ 148 (238)
T PF13360_consen 86 ----------------GSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS-SGKLVALDPKTGKLLWKY 148 (238)
T ss_dssp ----------------SEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEET-CSEEEEEETTTTEEEEEE
T ss_pred ----------------eeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEec-cCcEEEEecCCCcEEEEe
Confidence 24556665555 587 44332222 1233345556778877754 5679999998875 776
Q ss_pred ccCCcc-----------CCcEEEEcCeEEEEeC-cEEEEecCCc----eEEEeccccccccccEEEEEECCeEEEEeCcc
Q 021080 206 EDYGWL-----------QGPMAIVHDSVYLMSH-GLIIKQHRDV----RKVVASASEFRRRIGFAMIGMGDDIYVIGGVI 269 (317)
Q Consensus 206 ~~~~~~-----------~~~~~~~~~~ly~~g~-~~~~~yd~~~----W~~v~~~~~~~~r~~~~~~~~~~~lyv~GG~~ 269 (317)
.-..+. .......++.+|+... +.+..+|.++ |+.. .. . ........++.||+...
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~d~~tg~~~w~~~--~~---~-~~~~~~~~~~~l~~~~~-- 220 (238)
T PF13360_consen 149 PVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGRVVAVDLATGEKLWSKP--IS---G-IYSLPSVDGGTLYVTSS-- 220 (238)
T ss_dssp ESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSSEEEEETTTTEEEEEEC--SS-----ECECEECCCTEEEEEET--
T ss_pred ecCCCCCCcceeeecccccceEEECCEEEEEcCCCeEEEEECCCCCEEEEec--CC---C-ccCCceeeCCEEEEEeC--
Confidence 443322 0122233678898886 3356567665 8432 22 1 11124556788887761
Q ss_pred cCCCCceecccCcceeEeecCCCCCceee
Q 021080 270 GPDRWNWDIKPMSDVDVLTVGAERPTWRQ 298 (317)
Q Consensus 270 ~~~~~~~~~~~~~~v~~yd~~~~~~~W~~ 298 (317)
. ..+.++|+++++..|+.
T Consensus 221 ~-----------~~l~~~d~~tG~~~W~~ 238 (238)
T PF13360_consen 221 D-----------GRLYALDLKTGKVVWQQ 238 (238)
T ss_dssp T-----------TEEEEEETTTTEEEEEE
T ss_pred C-----------CEEEEEECCCCCEEeEC
Confidence 1 27899999999777863
No 58
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=97.64 E-value=0.00039 Score=60.72 Aligned_cols=43 Identities=26% Similarity=0.459 Sum_probs=38.6
Q ss_pred CcCCCCc----HHHHHHHhccCCCCchhhhhhcCHhHHHhhcChhhH
Q 021080 3 ELIEGLP----DAVALRCLARVPFFLHPKLELVSRSWRAAIRSPELF 45 (317)
Q Consensus 3 ~~~~~Lp----~d~~~~~l~r~p~~~~~~~~~v~k~w~~l~~s~~~~ 45 (317)
+++.-|| +++++.||+-+...+++....|||.|+.+++.+-+-
T Consensus 73 DFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~W 119 (499)
T KOG0281|consen 73 DFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLW 119 (499)
T ss_pred HHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHH
Confidence 3566789 999999999999999999999999999999988653
No 59
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.55 E-value=0.018 Score=48.89 Aligned_cols=138 Identities=18% Similarity=0.192 Sum_probs=86.7
Q ss_pred eeEEeeCCCC--ceeeCCCCCccCCCceE--EEEECCEEEEEecCceeEEEEeCCCCc--EEeccCCccCCcEEEEcCeE
Q 021080 149 QAEMYDPEKD--VWVPIPDLHRTHNSACT--GVVIGGKVHVLHKGLSTVQVLDHMGLG--WTVEDYGWLQGPMAIVHDSV 222 (317)
Q Consensus 149 ~~~~yd~~t~--~W~~~~~~p~~~r~~~~--~~~~~g~lyv~gG~~~~v~~yd~~~~~--W~~~~~~~~~~~~~~~~~~l 222 (317)
.+.++|+.++ .|+.- +... ..... .+..++.+|+..+ ...+.++|..+++ |+.-.+..........++.+
T Consensus 4 ~l~~~d~~tG~~~W~~~--~~~~-~~~~~~~~~~~~~~v~~~~~-~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~v 79 (238)
T PF13360_consen 4 TLSALDPRTGKELWSYD--LGPG-IGGPVATAVPDGGRVYVASG-DGNLYALDAKTGKVLWRFDLPGPISGAPVVDGGRV 79 (238)
T ss_dssp EEEEEETTTTEEEEEEE--CSSS-CSSEEETEEEETTEEEEEET-TSEEEEEETTTSEEEEEEECSSCGGSGEEEETTEE
T ss_pred EEEEEECCCCCEEEEEE--CCCC-CCCccceEEEeCCEEEEEcC-CCEEEEEECCCCCEEEEeeccccccceeeeccccc
Confidence 4556776665 37652 1111 22222 4558999999855 6789999997775 88665433333447789999
Q ss_pred EEEeC-cEEEEecCCc----eE-EEeccccccccccEEEEEECCeEEEEeCcccCCCCceecccCcceeEeecCCCCCce
Q 021080 223 YLMSH-GLIIKQHRDV----RK-VVASASEFRRRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAERPTW 296 (317)
Q Consensus 223 y~~g~-~~~~~yd~~~----W~-~v~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~~~~W 296 (317)
|+... +.++.+|.++ |+ .....+.............++.+|+... ...+..+|++++...|
T Consensus 80 ~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~g~l~~~d~~tG~~~w 146 (238)
T PF13360_consen 80 YVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS-------------SGKLVALDPKTGKLLW 146 (238)
T ss_dssp EEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEET-------------CSEEEEEETTTTEEEE
T ss_pred ccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEec-------------cCcEEEEecCCCcEEE
Confidence 98874 6899999655 99 4544332122233344555777777654 1378899999887778
Q ss_pred eecccCC
Q 021080 297 RQVSPMT 303 (317)
Q Consensus 297 ~~~~~~p 303 (317)
+.-...|
T Consensus 147 ~~~~~~~ 153 (238)
T PF13360_consen 147 KYPVGEP 153 (238)
T ss_dssp EEESSTT
T ss_pred EeecCCC
Confidence 7754443
No 60
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.49 E-value=0.039 Score=50.63 Aligned_cols=138 Identities=16% Similarity=0.128 Sum_probs=80.0
Q ss_pred cCceEEEEEeCCCCceEEEeCCCCC--EeecCCCCccccccCCeeEEEeCCEEEEEcCcCCCCCCCCCCCCCccccccee
Q 021080 54 SENLLCVCAFDPENLWQLYDPLRDL--WITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVW 131 (317)
Q Consensus 54 ~~~~l~v~gg~~~~~~~~yd~~~~~--W~~~~~~p~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~ 131 (317)
.++.+|+... ...++++|..+++ |+.- ++. ....+.++.++.+|+.+..
T Consensus 64 ~~~~v~v~~~--~g~v~a~d~~tG~~~W~~~--~~~----~~~~~p~v~~~~v~v~~~~--------------------- 114 (377)
T TIGR03300 64 AGGKVYAADA--DGTVVALDAETGKRLWRVD--LDE----RLSGGVGADGGLVFVGTEK--------------------- 114 (377)
T ss_pred ECCEEEEECC--CCeEEEEEccCCcEeeeec--CCC----CcccceEEcCCEEEEEcCC---------------------
Confidence 3667777654 2579999988765 8642 222 1112345567788865431
Q ss_pred EecccCCCCCCCcCCCceeEEeeCCCC--ceeeCCCCCccCCCceEEEEECCEEEEEecCceeEEEEeCCCCc--EEecc
Q 021080 132 SYDPVTRGFTSCRKSISQAEMYDPEKD--VWVPIPDLHRTHNSACTGVVIGGKVHVLHKGLSTVQVLDHMGLG--WTVED 207 (317)
Q Consensus 132 ~~d~~~~G~~~~~~~~~~~~~yd~~t~--~W~~~~~~p~~~r~~~~~~~~~g~lyv~gG~~~~v~~yd~~~~~--W~~~~ 207 (317)
..++.+|..+. .|+.-. +.. .....++.++++|+..+ ...+.++|+.+++ |+...
T Consensus 115 ----------------g~l~ald~~tG~~~W~~~~--~~~--~~~~p~v~~~~v~v~~~-~g~l~a~d~~tG~~~W~~~~ 173 (377)
T TIGR03300 115 ----------------GEVIALDAEDGKELWRAKL--SSE--VLSPPLVANGLVVVRTN-DGRLTALDAATGERLWTYSR 173 (377)
T ss_pred ----------------CEEEEEECCCCcEeeeecc--Cce--eecCCEEECCEEEEECC-CCeEEEEEcCCCceeeEEcc
Confidence 24555665554 476432 111 12234456788887654 4569999998764 87543
Q ss_pred CCcc-----CCcEEEEcCeEEEEeC-cEEEEecCCc----eEEE
Q 021080 208 YGWL-----QGPMAIVHDSVYLMSH-GLIIKQHRDV----RKVV 241 (317)
Q Consensus 208 ~~~~-----~~~~~~~~~~ly~~g~-~~~~~yd~~~----W~~v 241 (317)
.... ..+.+..++.+|+... +.++.+|+++ |+.-
T Consensus 174 ~~~~~~~~~~~sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~ 217 (377)
T TIGR03300 174 VTPALTLRGSASPVIADGGVLVGFAGGKLVALDLQTGQPLWEQR 217 (377)
T ss_pred CCCceeecCCCCCEEECCEEEEECCCCEEEEEEccCCCEeeeec
Confidence 2211 1233456777665543 7899998754 8753
No 61
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.13 E-value=0.041 Score=50.47 Aligned_cols=132 Identities=17% Similarity=0.155 Sum_probs=74.5
Q ss_pred eeEEeeCCCC--ceeeCCCCCccCCCceEEEEECCEEEEEecCceeEEEEeCCCCc--EEeccCCccCCcEEEEcCeEEE
Q 021080 149 QAEMYDPEKD--VWVPIPDLHRTHNSACTGVVIGGKVHVLHKGLSTVQVLDHMGLG--WTVEDYGWLQGPMAIVHDSVYL 224 (317)
Q Consensus 149 ~~~~yd~~t~--~W~~~~~~p~~~r~~~~~~~~~g~lyv~gG~~~~v~~yd~~~~~--W~~~~~~~~~~~~~~~~~~ly~ 224 (317)
.+++||..++ .|+.--.- . ...+.++.++++|+.+. ...++++|..+++ |+.........+.+..++.+|+
T Consensus 76 ~v~a~d~~tG~~~W~~~~~~--~--~~~~p~v~~~~v~v~~~-~g~l~ald~~tG~~~W~~~~~~~~~~~p~v~~~~v~v 150 (377)
T TIGR03300 76 TVVALDAETGKRLWRVDLDE--R--LSGGVGADGGLVFVGTE-KGEVIALDAEDGKELWRAKLSSEVLSPPLVANGLVVV 150 (377)
T ss_pred eEEEEEccCCcEeeeecCCC--C--cccceEEcCCEEEEEcC-CCEEEEEECCCCcEeeeeccCceeecCCEEECCEEEE
Confidence 3555665544 47533211 1 11234456788886543 5679999987664 8755332222233446788887
Q ss_pred EeC-cEEEEecCCc----eEEEeccccccccccEEEEEECCeEEEEeCcccCCCCceecccCcceeEeecCCCCCceee
Q 021080 225 MSH-GLIIKQHRDV----RKVVASASEFRRRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAERPTWRQ 298 (317)
Q Consensus 225 ~g~-~~~~~yd~~~----W~~v~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~~~~W~~ 298 (317)
... +.++.+|.++ |+.-...+....+.....+..++.+|+ |.. ...+..+|+++++..|+.
T Consensus 151 ~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~-~~~------------~g~v~ald~~tG~~~W~~ 216 (377)
T TIGR03300 151 RTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLV-GFA------------GGKLVALDLQTGQPLWEQ 216 (377)
T ss_pred ECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEE-ECC------------CCEEEEEEccCCCEeeee
Confidence 654 7899999764 986543332111222334455666554 321 126778888887667864
No 62
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=96.86 E-value=0.052 Score=49.15 Aligned_cols=95 Identities=13% Similarity=0.155 Sum_probs=66.8
Q ss_pred eEEeeCCCCceeeCCCCCccCCCceEEEEECCEEEEEecC------------ceeEEEEeC--------CCCcEEeccCC
Q 021080 150 AEMYDPEKDVWVPIPDLHRTHNSACTGVVIGGKVHVLHKG------------LSTVQVLDH--------MGLGWTVEDYG 209 (317)
Q Consensus 150 ~~~yd~~t~~W~~~~~~p~~~r~~~~~~~~~g~lyv~gG~------------~~~v~~yd~--------~~~~W~~~~~~ 209 (317)
..+||.++..=...|.|+.+ .....++.++++||++... .-++..|++ ....|+.++++
T Consensus 88 t~vyDt~t~av~~~P~l~~p-k~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~~~~~~~~~~~w~W~~LP~P 166 (342)
T PF07893_consen 88 TLVYDTDTRAVATGPRLHSP-KRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYRPPPDDPSPEESWSWRSLPPP 166 (342)
T ss_pred eEEEECCCCeEeccCCCCCC-CcceEEEEeCCeEEEeeccCccccccCccceeEEEeccccccccccCCCcceEEcCCCC
Confidence 66899999998888998888 6666788889999999871 222344442 23358888764
Q ss_pred cc---C-------CcEEEE-cCeEEEE-eCc--EEEEecCCc--eEEEeccc
Q 021080 210 WL---Q-------GPMAIV-HDSVYLM-SHG--LIIKQHRDV--RKVVASAS 245 (317)
Q Consensus 210 ~~---~-------~~~~~~-~~~ly~~-g~~--~~~~yd~~~--W~~v~~~~ 245 (317)
+. . .+.+++ +..||+- .+. ..+.||+++ |++++...
T Consensus 167 Pf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~~GTysfDt~~~~W~~~GdW~ 218 (342)
T PF07893_consen 167 PFVRDRRYSDYRITSYAVVDGRTIFVSVNGRRWGTYSFDTESHEWRKHGDWM 218 (342)
T ss_pred CccccCCcccceEEEEEEecCCeEEEEecCCceEEEEEEcCCcceeecccee
Confidence 43 1 134566 5678873 444 799999987 99998654
No 63
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=96.76 E-value=0.051 Score=49.25 Aligned_cols=124 Identities=16% Similarity=0.099 Sum_probs=74.9
Q ss_pred CceEEEEEeCCCCceEEEeCCCCCEeecCCCCccccccCCeeEEEeCCEEEEEcCcCCCCCCCCCCCCCcccccceeEec
Q 021080 55 ENLLCVCAFDPENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYD 134 (317)
Q Consensus 55 ~~~l~v~gg~~~~~~~~yd~~~~~W~~~~~~p~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~d 134 (317)
++.|+..... .....||..+..-...|.++.+ ...-.++.++++||+......... ...
T Consensus 76 gskIv~~d~~--~~t~vyDt~t~av~~~P~l~~p---k~~pisv~VG~~LY~m~~~~~~~~-----------~~~----- 134 (342)
T PF07893_consen 76 GSKIVAVDQS--GRTLVYDTDTRAVATGPRLHSP---KRCPISVSVGDKLYAMDRSPFPEP-----------AGR----- 134 (342)
T ss_pred CCeEEEEcCC--CCeEEEECCCCeEeccCCCCCC---CcceEEEEeCCeEEEeeccCcccc-----------ccC-----
Confidence 5555555433 5689999999998888887764 333355667888999998643210 000
Q ss_pred ccCCCCCCCcCCCceeEEee--------CCCCceeeCCCCCccCCC-------ceEEEEE-CCEEEEE-ecCceeEEEEe
Q 021080 135 PVTRGFTSCRKSISQAEMYD--------PEKDVWVPIPDLHRTHNS-------ACTGVVI-GGKVHVL-HKGLSTVQVLD 197 (317)
Q Consensus 135 ~~~~G~~~~~~~~~~~~~yd--------~~t~~W~~~~~~p~~~r~-------~~~~~~~-~g~lyv~-gG~~~~v~~yd 197 (317)
......++..|+ ...-.|+.+|+.|-. .. -.+-+++ +..|+|. .+.....++||
T Consensus 135 --------~~~~~FE~l~~~~~~~~~~~~~~w~W~~LP~PPf~-~~~~~~~~~i~sYavv~g~~I~vS~~~~~~GTysfD 205 (342)
T PF07893_consen 135 --------PDFPCFEALVYRPPPDDPSPEESWSWRSLPPPPFV-RDRRYSDYRITSYAVVDGRTIFVSVNGRRWGTYSFD 205 (342)
T ss_pred --------ccceeEEEeccccccccccCCCcceEEcCCCCCcc-ccCCcccceEEEEEEecCCeEEEEecCCceEEEEEE
Confidence 000012222233 223378999876655 32 2334556 5678883 22223599999
Q ss_pred CCCCcEEeccC
Q 021080 198 HMGLGWTVEDY 208 (317)
Q Consensus 198 ~~~~~W~~~~~ 208 (317)
+.+.+|+....
T Consensus 206 t~~~~W~~~Gd 216 (342)
T PF07893_consen 206 TESHEWRKHGD 216 (342)
T ss_pred cCCcceeeccc
Confidence 99999999864
No 64
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=96.54 E-value=0.37 Score=42.27 Aligned_cols=95 Identities=11% Similarity=0.100 Sum_probs=64.3
Q ss_pred CceeEEeeCCCCceeeCCCCCccCCCceEEEEE-CCEEEEEec------CceeEEEEeCCCCcEEeccCCc-----cCCc
Q 021080 147 ISQAEMYDPEKDVWVPIPDLHRTHNSACTGVVI-GGKVHVLHK------GLSTVQVLDHMGLGWTVEDYGW-----LQGP 214 (317)
Q Consensus 147 ~~~~~~yd~~t~~W~~~~~~p~~~r~~~~~~~~-~g~lyv~gG------~~~~v~~yd~~~~~W~~~~~~~-----~~~~ 214 (317)
-..+..||..+.+|..+..--.+ . -.+.... +++||+.|. ....+..||..+.+|+.++... .+..
T Consensus 15 C~~lC~yd~~~~qW~~~g~~i~G-~-V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~ 92 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNGISG-T-VTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVT 92 (281)
T ss_pred CCEEEEEECCCCEeecCCCCceE-E-EEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEE
Confidence 46788899999999988654222 1 1223333 778888776 3567889999999998887632 1222
Q ss_pred EEEE----cCeEEEEeC-----cEEEEecCCceEEEec
Q 021080 215 MAIV----HDSVYLMSH-----GLIIKQHRDVRKVVAS 243 (317)
Q Consensus 215 ~~~~----~~~ly~~g~-----~~~~~yd~~~W~~v~~ 243 (317)
+.+. .+.+++.|. ..+..||-.+|+.+..
T Consensus 93 a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~ 130 (281)
T PF12768_consen 93 ALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGS 130 (281)
T ss_pred EEEeeccCCceEEEeceecCCCceEEEEcCCceEeccc
Confidence 2222 235675553 5788999999999886
No 65
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.52 E-value=0.094 Score=45.14 Aligned_cols=91 Identities=13% Similarity=0.060 Sum_probs=68.9
Q ss_pred EEE-ECCEEEEEec--CceeEEEEeCCCCcEEeccCCcc---CCcEEEEcCeEEEEeC--cEEEEecCCceEEEeccccc
Q 021080 176 GVV-IGGKVHVLHK--GLSTVQVLDHMGLGWTVEDYGWL---QGPMAIVHDSVYLMSH--GLIIKQHRDVRKVVASASEF 247 (317)
Q Consensus 176 ~~~-~~g~lyv~gG--~~~~v~~yd~~~~~W~~~~~~~~---~~~~~~~~~~ly~~g~--~~~~~yd~~~W~~v~~~~~~ 247 (317)
..+ .+|.+|.-.| ..+.+..||+.+++-....+++. .-.++.++++||.+-. +..+.||.++.+.+...+
T Consensus 50 L~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f~yd~~tl~~~~~~~-- 127 (264)
T PF05096_consen 50 LEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGFVYDPNTLKKIGTFP-- 127 (264)
T ss_dssp EEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEEE--
T ss_pred EEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEEEEccccceEEEEEe--
Confidence 344 6899999998 66789999999998654444443 3466788999999976 789999999999888887
Q ss_pred cccccEEEEEECCeEEEEeCc
Q 021080 248 RRRIGFAMIGMGDDIYVIGGV 268 (317)
Q Consensus 248 ~~r~~~~~~~~~~~lyv~GG~ 268 (317)
....+-+++..+..|++-.|.
T Consensus 128 y~~EGWGLt~dg~~Li~SDGS 148 (264)
T PF05096_consen 128 YPGEGWGLTSDGKRLIMSDGS 148 (264)
T ss_dssp -SSS--EEEECSSCEEEE-SS
T ss_pred cCCcceEEEcCCCEEEEECCc
Confidence 556777888888889988883
No 66
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=95.90 E-value=0.092 Score=45.21 Aligned_cols=92 Identities=15% Similarity=0.140 Sum_probs=50.2
Q ss_pred eCCCCCccCCCceEEEEE--CCE--EEEEecCceeEEEEeCCCCcEEeccCCccCCcEEEEcCeEEEEeCcEEEEecCCc
Q 021080 162 PIPDLHRTHNSACTGVVI--GGK--VHVLHKGLSTVQVLDHMGLGWTVEDYGWLQGPMAIVHDSVYLMSHGLIIKQHRDV 237 (317)
Q Consensus 162 ~~~~~p~~~r~~~~~~~~--~g~--lyv~gG~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~ly~~g~~~~~~yd~~~ 237 (317)
.+++.|.+ |++|+.-++ .|| ..++||. .-+-.=.-.|+.|..+-.-++ .+|++ |.+-
T Consensus 80 LvGdvP~a-RYGHt~~vV~SrGKta~VlFGGR-SY~P~~qRTTenWNsVvDC~P---------~VfLi--------DleF 140 (337)
T PF03089_consen 80 LVGDVPEA-RYGHTINVVHSRGKTACVLFGGR-SYMPPGQRTTENWNSVVDCPP---------QVFLI--------DLEF 140 (337)
T ss_pred ecCCCCcc-cccceEEEEEECCcEEEEEECCc-ccCCccccchhhcceeccCCC---------eEEEE--------eccc
Confidence 35889999 999976544 333 5566771 101111223566765533222 23333 3332
Q ss_pred -eEEEecccccc-ccccEEEEEECCeEEEEeCcccCC
Q 021080 238 -RKVVASASEFR-RRIGFAMIGMGDDIYVIGGVIGPD 272 (317)
Q Consensus 238 -W~~v~~~~~~~-~r~~~~~~~~~~~lyv~GG~~~~~ 272 (317)
-...-.+|+.+ +...|...+-+|.||++||+.-..
T Consensus 141 GC~tah~lpEl~dG~SFHvslar~D~VYilGGHsl~s 177 (337)
T PF03089_consen 141 GCCTAHTLPELQDGQSFHVSLARNDCVYILGGHSLES 177 (337)
T ss_pred cccccccchhhcCCeEEEEEEecCceEEEEccEEccC
Confidence 22222334433 445566777799999999987554
No 67
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=95.85 E-value=1 Score=38.55 Aligned_cols=195 Identities=17% Similarity=0.165 Sum_probs=105.1
Q ss_pred CceEEEEEeCCCCceEEEeCCCCCEeecCCCCccccccCCeeEEEe--CCEEEEEcCcCCCCCCCCCCCCCcccccceeE
Q 021080 55 ENLLCVCAFDPENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVST--AGKLFVLGGGSDAVDPLTGDQDGSFATNEVWS 132 (317)
Q Consensus 55 ~~~l~v~gg~~~~~~~~yd~~~~~W~~~~~~p~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~ 132 (317)
+..||+.- -....++.+|+.+++-..+ ..+.+ .+++.. ++.+|+....
T Consensus 11 ~g~l~~~D-~~~~~i~~~~~~~~~~~~~-~~~~~------~G~~~~~~~g~l~v~~~~---------------------- 60 (246)
T PF08450_consen 11 DGRLYWVD-IPGGRIYRVDPDTGEVEVI-DLPGP------NGMAFDRPDGRLYVADSG---------------------- 60 (246)
T ss_dssp TTEEEEEE-TTTTEEEEEETTTTEEEEE-ESSSE------EEEEEECTTSEEEEEETT----------------------
T ss_pred CCEEEEEE-cCCCEEEEEECCCCeEEEE-ecCCC------ceEEEEccCCEEEEEEcC----------------------
Confidence 34455442 2346889999988776543 22211 333333 6788887752
Q ss_pred ecccCCCCCCCcCCCceeEEeeCCCCceeeCCCCCc---c-CCCceEEEEECCEEEEEec------Cc--eeEEEEeCCC
Q 021080 133 YDPVTRGFTSCRKSISQAEMYDPEKDVWVPIPDLHR---T-HNSACTGVVIGGKVHVLHK------GL--STVQVLDHMG 200 (317)
Q Consensus 133 ~d~~~~G~~~~~~~~~~~~~yd~~t~~W~~~~~~p~---~-~r~~~~~~~~~g~lyv~gG------~~--~~v~~yd~~~ 200 (317)
...++|+.+++++.+...+. + .+.+-.++--+|.||+..- .. ..++++++.
T Consensus 61 ----------------~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~- 123 (246)
T PF08450_consen 61 ----------------GIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD- 123 (246)
T ss_dssp ----------------CEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-
T ss_pred ----------------ceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-
Confidence 23456888988887755421 1 0223334445788888643 11 579999999
Q ss_pred CcEEeccCCcc-CCcEEEE--cCeEEEEeC--cEEEEecCCc----eE---EEeccccccccccEEEEEE-CCeEEEEeC
Q 021080 201 LGWTVEDYGWL-QGPMAIV--HDSVYLMSH--GLIIKQHRDV----RK---VVASASEFRRRIGFAMIGM-GDDIYVIGG 267 (317)
Q Consensus 201 ~~W~~~~~~~~-~~~~~~~--~~~ly~~g~--~~~~~yd~~~----W~---~v~~~~~~~~r~~~~~~~~-~~~lyv~GG 267 (317)
.+.+.+..... +...+.. +..||+... +.++.|+.+. +. .+...+... ...-+++.- +|.||+..-
T Consensus 124 ~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-g~pDG~~vD~~G~l~va~~ 202 (246)
T PF08450_consen 124 GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGP-GYPDGLAVDSDGNLWVADW 202 (246)
T ss_dssp SEEEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSS-CEEEEEEEBTTS-EEEEEE
T ss_pred CeEEEEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCC-cCCCcceEcCCCCEEEEEc
Confidence 55554432222 2334433 335888764 7899988642 33 222333211 112334443 688998622
Q ss_pred cccCCCCceecccCcceeEeecCCCCCceeecccCCCCCCceeeeeE
Q 021080 268 VIGPDRWNWDIKPMSDVDVLTVGAERPTWRQVSPMTRCRGTILGCTQ 314 (317)
Q Consensus 268 ~~~~~~~~~~~~~~~~v~~yd~~~~~~~W~~~~~~p~~~~~~~~~~~ 314 (317)
....|.+||++.. .-..+ ++|.+ ...+||.
T Consensus 203 ------------~~~~I~~~~p~G~--~~~~i-~~p~~--~~t~~~f 232 (246)
T PF08450_consen 203 ------------GGGRIVVFDPDGK--LLREI-ELPVP--RPTNCAF 232 (246)
T ss_dssp ------------TTTEEEEEETTSC--EEEEE-E-SSS--SEEEEEE
T ss_pred ------------CCCEEEEECCCcc--EEEEE-cCCCC--CEEEEEE
Confidence 1238999999954 44444 45644 3345554
No 68
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=95.80 E-value=1.1 Score=38.74 Aligned_cols=90 Identities=9% Similarity=0.023 Sum_probs=43.7
Q ss_pred ceeEEeeCCCCceee-CCCCCccCCCceEEEEEC-CEEEEEecCceeEEEEeCCCCc-EEeccCCccCCcEEE-EcCeEE
Q 021080 148 SQAEMYDPEKDVWVP-IPDLHRTHNSACTGVVIG-GKVHVLHKGLSTVQVLDHMGLG-WTVEDYGWLQGPMAI-VHDSVY 223 (317)
Q Consensus 148 ~~~~~yd~~t~~W~~-~~~~p~~~r~~~~~~~~~-g~lyv~gG~~~~v~~yd~~~~~-W~~~~~~~~~~~~~~-~~~~ly 223 (317)
..+.+||..+.+... ++.-..+ ...+..-+ +.+|+.++....+..||+.+.+ -..++.......++. -++.++
T Consensus 53 ~~v~~~d~~~~~~~~~~~~~~~~---~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l 129 (300)
T TIGR03866 53 DTIQVIDLATGEVIGTLPSGPDP---ELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIV 129 (300)
T ss_pred CeEEEEECCCCcEEEeccCCCCc---cEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEE
Confidence 345667776665543 2221111 11122223 4577766545679999998754 222221111122222 255555
Q ss_pred EEeC---cEEEEecCCceEE
Q 021080 224 LMSH---GLIIKQHRDVRKV 240 (317)
Q Consensus 224 ~~g~---~~~~~yd~~~W~~ 240 (317)
+++. ..+..||.++.+.
T Consensus 130 ~~~~~~~~~~~~~d~~~~~~ 149 (300)
T TIGR03866 130 VNTSETTNMAHFIDTKTYEI 149 (300)
T ss_pred EEEecCCCeEEEEeCCCCeE
Confidence 5543 3566778776433
No 69
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=95.80 E-value=0.2 Score=48.26 Aligned_cols=116 Identities=13% Similarity=0.056 Sum_probs=72.1
Q ss_pred EEEEECCEEEEEecCceeEEEEeCCCCc--EEeccCCcc-----------CCcEEEEcCeEEEEeC-cEEEEecCCc---
Q 021080 175 TGVVIGGKVHVLHKGLSTVQVLDHMGLG--WTVEDYGWL-----------QGPMAIVHDSVYLMSH-GLIIKQHRDV--- 237 (317)
Q Consensus 175 ~~~~~~g~lyv~gG~~~~v~~yd~~~~~--W~~~~~~~~-----------~~~~~~~~~~ly~~g~-~~~~~yd~~~--- 237 (317)
+-++.+|+||+... ...++++|..+++ |+.-..... ....+..++++|+... +.++++|.++
T Consensus 64 tPvv~~g~vyv~s~-~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~dg~l~ALDa~TGk~ 142 (527)
T TIGR03075 64 QPLVVDGVMYVTTS-YSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLDARLVALDAKTGKV 142 (527)
T ss_pred CCEEECCEEEEECC-CCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCCCEEEEEECCCCCE
Confidence 45678999999754 3469999998765 886543211 1234566788888654 7899999875
Q ss_pred -eEEEeccccccccccEEEEEECCeEEEEeCcccCCCCceecccCcceeEeecCCCCCceee
Q 021080 238 -RKVVASASEFRRRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAERPTWRQ 298 (317)
Q Consensus 238 -W~~v~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~~~~W~~ 298 (317)
|+.-..-.........+-+..+++||+-....+.+ ....+..||.++++..|+.
T Consensus 143 ~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~-------~~G~v~AlD~~TG~~lW~~ 197 (527)
T TIGR03075 143 VWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFG-------VRGYVTAYDAKTGKLVWRR 197 (527)
T ss_pred EeecccccccccccccCCcEEECCEEEEeecccccC-------CCcEEEEEECCCCceeEec
Confidence 98643211100112223455688887753322111 2347889999999888974
No 70
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.79 E-value=0.53 Score=40.63 Aligned_cols=95 Identities=14% Similarity=-0.083 Sum_probs=64.7
Q ss_pred ceeEEeeCCCCceeeCCCCCccCCCceEEEEECCEEEEEecCceeEEEEeCCCCcEEeccCCc---cCCcEEEEcCeEEE
Q 021080 148 SQAEMYDPEKDVWVPIPDLHRTHNSACTGVVIGGKVHVLHKGLSTVQVLDHMGLGWTVEDYGW---LQGPMAIVHDSVYL 224 (317)
Q Consensus 148 ~~~~~yd~~t~~W~~~~~~p~~~r~~~~~~~~~g~lyv~gG~~~~v~~yd~~~~~W~~~~~~~---~~~~~~~~~~~ly~ 224 (317)
+.+..||+.+++=....++|.. .++-..+.++++||.+.=.......||+.+- +.+.... ..-..+.-+..+++
T Consensus 68 S~l~~~d~~tg~~~~~~~l~~~-~FgEGit~~~d~l~qLTWk~~~~f~yd~~tl--~~~~~~~y~~EGWGLt~dg~~Li~ 144 (264)
T PF05096_consen 68 SSLRKVDLETGKVLQSVPLPPR-YFGEGITILGDKLYQLTWKEGTGFVYDPNTL--KKIGTFPYPGEGWGLTSDGKRLIM 144 (264)
T ss_dssp EEEEEEETTTSSEEEEEE-TTT---EEEEEEETTEEEEEESSSSEEEEEETTTT--EEEEEEE-SSS--EEEECSSCEEE
T ss_pred EEEEEEECCCCcEEEEEECCcc-ccceeEEEECCEEEEEEecCCeEEEEccccc--eEEEEEecCCcceEEEcCCCEEEE
Confidence 6788899999987777788877 7777788999999999876778899998753 3332221 13345556677888
Q ss_pred EeC-cEEEEecCCceEEEeccc
Q 021080 225 MSH-GLIIKQHRDVRKVVASAS 245 (317)
Q Consensus 225 ~g~-~~~~~yd~~~W~~v~~~~ 245 (317)
-+| +.++..||++.+.+..+.
T Consensus 145 SDGS~~L~~~dP~~f~~~~~i~ 166 (264)
T PF05096_consen 145 SDGSSRLYFLDPETFKEVRTIQ 166 (264)
T ss_dssp E-SSSEEEEE-TTT-SEEEEEE
T ss_pred ECCccceEEECCcccceEEEEE
Confidence 887 789999999866655544
No 71
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=95.70 E-value=1.2 Score=42.60 Aligned_cols=122 Identities=16% Similarity=0.076 Sum_probs=66.7
Q ss_pred EEEC-CEEEEEecCceeEEEEeCCCCc--EEeccCCc------cCCcEEEEcCeEEEEe----------CcEEEEecCCc
Q 021080 177 VVIG-GKVHVLHKGLSTVQVLDHMGLG--WTVEDYGW------LQGPMAIVHDSVYLMS----------HGLIIKQHRDV 237 (317)
Q Consensus 177 ~~~~-g~lyv~gG~~~~v~~yd~~~~~--W~~~~~~~------~~~~~~~~~~~ly~~g----------~~~~~~yd~~~ 237 (317)
++.+ +++|+... ...+.++|..+++ |+...... ...+.++.++.+|+-. .+.++.+|.++
T Consensus 106 ~~~~~~~V~v~~~-~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~T 184 (488)
T cd00216 106 AYWDPRKVFFGTF-DGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVET 184 (488)
T ss_pred EEccCCeEEEecC-CCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCC
Confidence 4556 88887543 5679999998765 88654332 1233345567776543 25789999865
Q ss_pred ----eEEEeccccc--cc----------ccc----EEEEE--ECCeEEEEeCcccCCC--Cc---eecccCcceeEeecC
Q 021080 238 ----RKVVASASEF--RR----------RIG----FAMIG--MGDDIYVIGGVIGPDR--WN---WDIKPMSDVDVLTVG 290 (317)
Q Consensus 238 ----W~~v~~~~~~--~~----------r~~----~~~~~--~~~~lyv~GG~~~~~~--~~---~~~~~~~~v~~yd~~ 290 (317)
|+.-...+.+ .+ +.+ ...+. -++.||+-.|...... .. .+....+.+..+|.+
T Consensus 185 G~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~ 264 (488)
T cd00216 185 GKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDAD 264 (488)
T ss_pred CceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCC
Confidence 9764321110 00 000 01122 2467777654321100 00 000234579999999
Q ss_pred CCCCceeec
Q 021080 291 AERPTWRQV 299 (317)
Q Consensus 291 ~~~~~W~~~ 299 (317)
+++..|+.-
T Consensus 265 tG~~~W~~~ 273 (488)
T cd00216 265 TGKVKWFYQ 273 (488)
T ss_pred CCCEEEEee
Confidence 998899853
No 72
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=95.21 E-value=0.0088 Score=51.97 Aligned_cols=40 Identities=18% Similarity=0.147 Sum_probs=36.4
Q ss_pred CCCCcHHHHHHHhccCCCCchhhhhhcCHhHHHhhcChhh
Q 021080 5 IEGLPDAVALRCLARVPFFLHPKLELVSRSWRAAIRSPEL 44 (317)
Q Consensus 5 ~~~Lp~d~~~~~l~r~p~~~~~~~~~v~k~w~~l~~s~~~ 44 (317)
|.+||||+++.|++.++.+.+.++..|||+|..+.++..+
T Consensus 98 ~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~l 137 (419)
T KOG2120|consen 98 WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESL 137 (419)
T ss_pred cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccc
Confidence 6789999999999999999999999999999998666544
No 73
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=95.00 E-value=0.44 Score=41.80 Aligned_cols=106 Identities=19% Similarity=0.170 Sum_probs=66.4
Q ss_pred CCceEEEeCCCCCEeecCCCCccccccCCeeEEEe-CCEEEEEcCcCCCCCCCCCCCCCcccccceeEecccCCCCCCCc
Q 021080 66 ENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVST-AGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRGFTSCR 144 (317)
Q Consensus 66 ~~~~~~yd~~~~~W~~~~~~p~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~G~~~~~ 144 (317)
-..+-.||+...+|..+..--. +.- ..+... +++||+.|..+-. .
T Consensus 15 C~~lC~yd~~~~qW~~~g~~i~---G~V-~~l~~~~~~~Llv~G~ft~~------------------------------~ 60 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNGIS---GTV-TDLQWASNNQLLVGGNFTLN------------------------------G 60 (281)
T ss_pred CCEEEEEECCCCEeecCCCCce---EEE-EEEEEecCCEEEEEEeeEEC------------------------------C
Confidence 4678889999999998764321 111 223333 7788888865421 1
Q ss_pred CCCceeEEeeCCCCceeeCCC-C----CccCCCceEEEEECC-EEEEEec---CceeEEEEeCCCCcEEeccC
Q 021080 145 KSISQAEMYDPEKDVWVPIPD-L----HRTHNSACTGVVIGG-KVHVLHK---GLSTVQVLDHMGLGWTVEDY 208 (317)
Q Consensus 145 ~~~~~~~~yd~~t~~W~~~~~-~----p~~~r~~~~~~~~~g-~lyv~gG---~~~~v~~yd~~~~~W~~~~~ 208 (317)
.....+-.||..+++|..++. . |.+ ...-.....++ .+++.|. ....+..|| ..+|..+..
T Consensus 61 ~~~~~la~yd~~~~~w~~~~~~~s~~ipgp-v~a~~~~~~d~~~~~~aG~~~~g~~~l~~~d--Gs~W~~i~~ 130 (281)
T PF12768_consen 61 TNSSNLATYDFKNQTWSSLGGGSSNSIPGP-VTALTFISNDGSNFWVAGRSANGSTFLMKYD--GSSWSSIGS 130 (281)
T ss_pred CCceeEEEEecCCCeeeecCCcccccCCCc-EEEEEeeccCCceEEEeceecCCCceEEEEc--CCceEeccc
Confidence 135678899999999998866 2 333 21111222233 5776665 455677885 568998875
No 74
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=94.64 E-value=3.8 Score=39.55 Aligned_cols=123 Identities=14% Similarity=0.104 Sum_probs=70.3
Q ss_pred EEEECCEEEEEecCceeEEEEeCCCCc--EEeccCCc-----cCCcEEEEcCeEEEEeC-------cEEEEecCCc----
Q 021080 176 GVVIGGKVHVLHKGLSTVQVLDHMGLG--WTVEDYGW-----LQGPMAIVHDSVYLMSH-------GLIIKQHRDV---- 237 (317)
Q Consensus 176 ~~~~~g~lyv~gG~~~~v~~yd~~~~~--W~~~~~~~-----~~~~~~~~~~~ly~~g~-------~~~~~yd~~~---- 237 (317)
.++.+++||+... ...+.++|..+++ |+...... ...+-++.++++|+-.. +.++.||.++
T Consensus 116 ~av~~~~v~v~t~-dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~l 194 (527)
T TIGR03075 116 VALYDGKVFFGTL-DARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLV 194 (527)
T ss_pred ceEECCEEEEEcC-CCEEEEEECCCCCEEeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCcee
Confidence 4677889987543 4579999998876 87542111 12334556888887642 5799999876
Q ss_pred eEEEeccccc-----------------------cccccE---EEEEE---CCeEEEEeCcccC---CCCceecccCccee
Q 021080 238 RKVVASASEF-----------------------RRRIGF---AMIGM---GDDIYVIGGVIGP---DRWNWDIKPMSDVD 285 (317)
Q Consensus 238 W~~v~~~~~~-----------------------~~r~~~---~~~~~---~~~lyv~GG~~~~---~~~~~~~~~~~~v~ 285 (317)
|+.-...+.. ..+.+. ...++ .+.||+=-|.-.. .....+-.+.+.+.
T Consensus 195 W~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~v 274 (527)
T TIGR03075 195 WRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIV 274 (527)
T ss_pred EeccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEE
Confidence 8743211100 011110 01233 3467765554111 00001114677899
Q ss_pred EeecCCCCCceeec
Q 021080 286 VLTVGAERPTWRQV 299 (317)
Q Consensus 286 ~yd~~~~~~~W~~~ 299 (317)
..|++|++.+|.-.
T Consensus 275 Ald~~TG~~~W~~Q 288 (527)
T TIGR03075 275 ARDPDTGKIKWHYQ 288 (527)
T ss_pred EEccccCCEEEeee
Confidence 99999998889754
No 75
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=94.61 E-value=1.3 Score=40.70 Aligned_cols=145 Identities=9% Similarity=-0.080 Sum_probs=82.4
Q ss_pred CceEEEEEeCCCCceEEEeCCCCCEeecCCCCccccccCCeeEEEeCCEEEEEcCcCCCCCCCCCCCCCcccccceeEec
Q 021080 55 ENLLCVCAFDPENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYD 134 (317)
Q Consensus 55 ~~~l~v~gg~~~~~~~~yd~~~~~W~~~~~~p~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~d 134 (317)
.+.+.++|-+..-.++..|-+++.- +..+.-.-.+........-|....+++|..
T Consensus 225 ~plllvaG~d~~lrifqvDGk~N~~--lqS~~l~~fPi~~a~f~p~G~~~i~~s~rr----------------------- 279 (514)
T KOG2055|consen 225 APLLLVAGLDGTLRIFQVDGKVNPK--LQSIHLEKFPIQKAEFAPNGHSVIFTSGRR----------------------- 279 (514)
T ss_pred CceEEEecCCCcEEEEEecCccChh--heeeeeccCccceeeecCCCceEEEecccc-----------------------
Confidence 5566666666666778888887763 222221100122222223333366677642
Q ss_pred ccCCCCCCCcCCCceeEEeeCCCCceeeCCCCCcc-C-CCceEEEEECCEEEEEecCceeEEEEeCCCCcEEeccCCccC
Q 021080 135 PVTRGFTSCRKSISQAEMYDPEKDVWVPIPDLHRT-H-NSACTGVVIGGKVHVLHKGLSTVQVLDHMGLGWTVEDYGWLQ 212 (317)
Q Consensus 135 ~~~~G~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~-~-r~~~~~~~~~g~lyv~gG~~~~v~~yd~~~~~W~~~~~~~~~ 212 (317)
.-++.||.++.+-.++.++..- . -...-.|..++.+.++-|...-|..+...|+.|-.--.+...
T Consensus 280 -------------ky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~ 346 (514)
T KOG2055|consen 280 -------------KYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGV 346 (514)
T ss_pred -------------eEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccE
Confidence 5678899999998888665321 0 111234567777777777666677777777776432222111
Q ss_pred CcEEE--Ec-CeEEEEeC-cEEEEecCCc
Q 021080 213 GPMAI--VH-DSVYLMSH-GLIIKQHRDV 237 (317)
Q Consensus 213 ~~~~~--~~-~~ly~~g~-~~~~~yd~~~ 237 (317)
....+ .+ .+|++.++ +.||.+|..+
T Consensus 347 v~~~~fsSdsk~l~~~~~~GeV~v~nl~~ 375 (514)
T KOG2055|consen 347 VSDFTFSSDSKELLASGGTGEVYVWNLRQ 375 (514)
T ss_pred EeeEEEecCCcEEEEEcCCceEEEEecCC
Confidence 11111 23 35666655 8999999876
No 76
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=94.57 E-value=0.024 Score=49.48 Aligned_cols=46 Identities=33% Similarity=0.406 Sum_probs=39.9
Q ss_pred CCCCcHHHHHHHhccCCC-----CchhhhhhcCHhHHHhhcChhhHHHHHh
Q 021080 5 IEGLPDAVALRCLARVPF-----FLHPKLELVSRSWRAAIRSPELFKARQE 50 (317)
Q Consensus 5 ~~~Lp~d~~~~~l~r~p~-----~~~~~~~~v~k~w~~l~~s~~~~~~~~~ 50 (317)
|+.|||||+.+||.++-. .++.++++|||.|.....+|++.+.-..
T Consensus 107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC~ 157 (366)
T KOG2997|consen 107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLACL 157 (366)
T ss_pred hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHHHH
Confidence 467999999999998754 7889999999999999999999876554
No 77
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=94.51 E-value=4.6 Score=39.71 Aligned_cols=132 Identities=10% Similarity=0.029 Sum_probs=83.0
Q ss_pred ceeEEeeCCCCceeeCCCCCccCCCceEEEEECCEEEEEecCceeEEEEeCCCCc-EEeccCCccCCcEE---EEcCeEE
Q 021080 148 SQAEMYDPEKDVWVPIPDLHRTHNSACTGVVIGGKVHVLHKGLSTVQVLDHMGLG-WTVEDYGWLQGPMA---IVHDSVY 223 (317)
Q Consensus 148 ~~~~~yd~~t~~W~~~~~~p~~~r~~~~~~~~~g~lyv~gG~~~~v~~yd~~~~~-W~~~~~~~~~~~~~---~~~~~ly 223 (317)
-.+-+|+-.+++......-+.. +..+.+..-||.+.+.|+....|-+||..+.- ...........++. ..++.++
T Consensus 330 gQLlVweWqsEsYVlKQQgH~~-~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~ll 408 (893)
T KOG0291|consen 330 GQLLVWEWQSESYVLKQQGHSD-RITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLL 408 (893)
T ss_pred ceEEEEEeeccceeeecccccc-ceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEE
Confidence 4566777666666655554555 55665666799999999977888888887753 22222221111111 1234444
Q ss_pred EEe-CcEEEEecCCceEEEeccccccccccEEEEEEC--CeEEEEeCcccCCCCceecccCcceeEeecCCC
Q 021080 224 LMS-HGLIIKQHRDVRKVVASASEFRRRIGFAMIGMG--DDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAE 292 (317)
Q Consensus 224 ~~g-~~~~~~yd~~~W~~v~~~~~~~~r~~~~~~~~~--~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~ 292 (317)
... .+.+..+|.++.+....... ..|.++++++.+ |.|.+.|+.+.. +|++++.+++
T Consensus 409 ssSLDGtVRAwDlkRYrNfRTft~-P~p~QfscvavD~sGelV~AG~~d~F-----------~IfvWS~qTG 468 (893)
T KOG0291|consen 409 SSSLDGTVRAWDLKRYRNFRTFTS-PEPIQFSCVAVDPSGELVCAGAQDSF-----------EIFVWSVQTG 468 (893)
T ss_pred EeecCCeEEeeeecccceeeeecC-CCceeeeEEEEcCCCCEEEeeccceE-----------EEEEEEeecC
Confidence 444 37899999888333332222 245667777776 888888886655 7888888887
No 78
>smart00284 OLF Olfactomedin-like domains.
Probab=94.45 E-value=2.2 Score=36.71 Aligned_cols=120 Identities=11% Similarity=0.039 Sum_probs=72.4
Q ss_pred ceeeCCCCCccCCCceEEEEECCEEEEEecCceeEEEEeCCCCcE---EeccCCc-----c-------CCcEEEEcCeEE
Q 021080 159 VWVPIPDLHRTHNSACTGVVIGGKVHVLHKGLSTVQVLDHMGLGW---TVEDYGW-----L-------QGPMAIVHDSVY 223 (317)
Q Consensus 159 ~W~~~~~~p~~~r~~~~~~~~~g~lyv~gG~~~~v~~yd~~~~~W---~~~~~~~-----~-------~~~~~~~~~~ly 223 (317)
++...=.+|.+ ..+...++++|.+|.--.....+.+||+.+++- ..++... + ..-.++-.+.|+
T Consensus 63 ~~~~~~~Lp~~-~~GtG~VVYngslYY~~~~s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLW 141 (255)
T smart00284 63 KNPTDHPLPHA-GQGTGVVVYNGSLYFNKFNSHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLW 141 (255)
T ss_pred CCceEEECCCc-cccccEEEECceEEEEecCCccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceE
Confidence 33333346666 778888999999999776678899999999974 4444211 0 123344455566
Q ss_pred EE---eC--c--EEEEecCCc------eEEEeccccccccccEEEEEECCeEEEEeCcccCCCCceecccCcceeEeecC
Q 021080 224 LM---SH--G--LIIKQHRDV------RKVVASASEFRRRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVG 290 (317)
Q Consensus 224 ~~---g~--~--~~~~yd~~~------W~~v~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~ 290 (317)
++ .. + .+-+.|+++ |.. ..+ ....+-++++| |.||++--.... ...=.+.||..
T Consensus 142 vIYat~~~~g~ivvSkLnp~tL~ve~tW~T--~~~--k~sa~naFmvC-GvLY~~~s~~~~--------~~~I~yayDt~ 208 (255)
T smart00284 142 VIYATEQNAGKIVISKLNPATLTIENTWIT--TYN--KRSASNAFMIC-GILYVTRSLGSK--------GEKVFYAYDTN 208 (255)
T ss_pred EEEeccCCCCCEEEEeeCcccceEEEEEEc--CCC--cccccccEEEe-eEEEEEccCCCC--------CcEEEEEEECC
Confidence 55 22 2 234666654 776 333 23344455555 889998532222 11235789999
Q ss_pred CC
Q 021080 291 AE 292 (317)
Q Consensus 291 ~~ 292 (317)
++
T Consensus 209 t~ 210 (255)
T smart00284 209 TG 210 (255)
T ss_pred CC
Confidence 87
No 79
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=94.43 E-value=0.64 Score=46.66 Aligned_cols=121 Identities=15% Similarity=0.148 Sum_probs=67.3
Q ss_pred eEEEEECCEEEEEecCceeEEEEeCCCCc--EEeccCCccCC--------------------------cEEEEcCeEEEE
Q 021080 174 CTGVVIGGKVHVLHKGLSTVQVLDHMGLG--WTVEDYGWLQG--------------------------PMAIVHDSVYLM 225 (317)
Q Consensus 174 ~~~~~~~g~lyv~gG~~~~v~~yd~~~~~--W~~~~~~~~~~--------------------------~~~~~~~~ly~~ 225 (317)
.+-++++|+||+... .+.++++|..+++ |+.-....... ..+++++++|+.
T Consensus 188 ~TPlvvgg~lYv~t~-~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~ 266 (764)
T TIGR03074 188 ATPLKVGDTLYLCTP-HNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILP 266 (764)
T ss_pred cCCEEECCEEEEECC-CCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEe
Confidence 455788999999865 4678999988765 88655432100 012345577665
Q ss_pred eC-cEEEEecCCc----eEE-----E---ecccc---ccccccEEEEEECCeEEEEeCcccCCCCceecccCcceeEeec
Q 021080 226 SH-GLIIKQHRDV----RKV-----V---ASASE---FRRRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTV 289 (317)
Q Consensus 226 g~-~~~~~yd~~~----W~~-----v---~~~~~---~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~ 289 (317)
.. +.++.+|.++ |.- + ..+.. ..-....+-+..+|+|++ |+....+.... .....|..||.
T Consensus 267 T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIv-G~~v~d~~~~~--~~~G~I~A~Da 343 (764)
T TIGR03074 267 TSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVI-GGRVADNYSTD--EPSGVIRAFDV 343 (764)
T ss_pred cCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEE-Eeccccccccc--CCCcEEEEEEC
Confidence 43 5667776554 642 1 11211 111122334566787776 44321110000 13456889999
Q ss_pred CCCCCceee
Q 021080 290 GAERPTWRQ 298 (317)
Q Consensus 290 ~~~~~~W~~ 298 (317)
++++..|+-
T Consensus 344 ~TGkl~W~~ 352 (764)
T TIGR03074 344 NTGALVWAW 352 (764)
T ss_pred CCCcEeeEE
Confidence 999888874
No 80
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=94.00 E-value=0.23 Score=42.84 Aligned_cols=86 Identities=17% Similarity=0.167 Sum_probs=57.5
Q ss_pred cCCCCccccccCCeeEEEeC--C--EEEEEcCcCCCCCCCCCCCCCcccccceeEecccCCCCCCCcCCCceeEEeeCCC
Q 021080 82 LPVLPSKIRHLAHFGVVSTA--G--KLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRGFTSCRKSISQAEMYDPEK 157 (317)
Q Consensus 82 ~~~~p~~~~~r~~~~~~~~~--~--~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~G~~~~~~~~~~~~~yd~~t 157 (317)
+..+|.. |++|++.++. + -+.+|||.+-. .-++. .... ++..-+....++..|++-
T Consensus 81 vGdvP~a---RYGHt~~vV~SrGKta~VlFGGRSY~-------P~~qR---TTen-------WNsVvDC~P~VfLiDleF 140 (337)
T PF03089_consen 81 VGDVPEA---RYGHTINVVHSRGKTACVLFGGRSYM-------PPGQR---TTEN-------WNSVVDCPPQVFLIDLEF 140 (337)
T ss_pred cCCCCcc---cccceEEEEEECCcEEEEEECCcccC-------Ccccc---chhh-------cceeccCCCeEEEEeccc
Confidence 3566664 9999977763 2 37888986431 00111 1111 111233467888899888
Q ss_pred Ccee--eCCCCCccCCCceEEEEECCEEEEEec
Q 021080 158 DVWV--PIPDLHRTHNSACTGVVIGGKVHVLHK 188 (317)
Q Consensus 158 ~~W~--~~~~~p~~~r~~~~~~~~~g~lyv~gG 188 (317)
+-.+ .++.+..+ ...|.+..-++.+|++||
T Consensus 141 GC~tah~lpEl~dG-~SFHvslar~D~VYilGG 172 (337)
T PF03089_consen 141 GCCTAHTLPELQDG-QSFHVSLARNDCVYILGG 172 (337)
T ss_pred cccccccchhhcCC-eEEEEEEecCceEEEEcc
Confidence 7664 56888888 889999999999999999
No 81
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=93.96 E-value=4.9 Score=36.74 Aligned_cols=195 Identities=19% Similarity=0.162 Sum_probs=108.0
Q ss_pred cCceEEEEEeCCCCceEEEeCCCCC--EeecCCCCccccccCCeeEEEeCCEEEEEcCcCCCCCCCCCCCCCccccccee
Q 021080 54 SENLLCVCAFDPENLWQLYDPLRDL--WITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVW 131 (317)
Q Consensus 54 ~~~~l~v~gg~~~~~~~~yd~~~~~--W~~~~~~p~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~ 131 (317)
.++.+|+... ...++++|+.+.+ |.....--.. .........+++||+-...
T Consensus 67 ~dg~v~~~~~--~G~i~A~d~~~g~~~W~~~~~~~~~---~~~~~~~~~~G~i~~g~~~--------------------- 120 (370)
T COG1520 67 GDGTVYVGTR--DGNIFALNPDTGLVKWSYPLLGAVA---QLSGPILGSDGKIYVGSWD--------------------- 120 (370)
T ss_pred eCCeEEEecC--CCcEEEEeCCCCcEEecccCcCcce---eccCceEEeCCeEEEeccc---------------------
Confidence 4667777632 2389999999887 8654321000 1222233337777765542
Q ss_pred EecccCCCCCCCcCCCceeEEeeCCC--CceeeCCCCCccCCCceEEEEECCEEEEEecCceeEEEEeCCCCc--EEecc
Q 021080 132 SYDPVTRGFTSCRKSISQAEMYDPEK--DVWVPIPDLHRTHNSACTGVVIGGKVHVLHKGLSTVQVLDHMGLG--WTVED 207 (317)
Q Consensus 132 ~~d~~~~G~~~~~~~~~~~~~yd~~t--~~W~~~~~~p~~~r~~~~~~~~~g~lyv~gG~~~~v~~yd~~~~~--W~~~~ 207 (317)
..+++||..+ ..|+.-.+.. . +.....++.++.+|+.. ....+.++|..+.+ |..-.
T Consensus 121 ----------------g~~y~ld~~~G~~~W~~~~~~~-~-~~~~~~v~~~~~v~~~s-~~g~~~al~~~tG~~~W~~~~ 181 (370)
T COG1520 121 ----------------GKLYALDASTGTLVWSRNVGGS-P-YYASPPVVGDGTVYVGT-DDGHLYALNADTGTLKWTYET 181 (370)
T ss_pred ----------------ceEEEEECCCCcEEEEEecCCC-e-EEecCcEEcCcEEEEec-CCCeEEEEEccCCcEEEEEec
Confidence 1455555533 3576443332 4 44555677788888874 24678888887664 87433
Q ss_pred CC-cc---CCcEEEEcCeEEEEeCc---EEEEecCCc----eEEEeccccccccccEEEEEECCeEEEEeCcccCCCCce
Q 021080 208 YG-WL---QGPMAIVHDSVYLMSHG---LIIKQHRDV----RKVVASASEFRRRIGFAMIGMGDDIYVIGGVIGPDRWNW 276 (317)
Q Consensus 208 ~~-~~---~~~~~~~~~~ly~~g~~---~~~~yd~~~----W~~v~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~ 276 (317)
.. .. ....+..++.+|+-..+ .++.+|++. |+.-...+.......-......+.||+-++.....
T Consensus 182 ~~~~~~~~~~~~~~~~~~vy~~~~~~~~~~~a~~~~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~---- 257 (370)
T COG1520 182 PAPLSLSIYGSPAIASGTVYVGSDGYDGILYALNAEDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGS---- 257 (370)
T ss_pred CCccccccccCceeecceEEEecCCCcceEEEEEccCCcEeeeeeeecccCcccccccccccCceEEECCcEEEEe----
Confidence 21 11 22223567777777553 688999865 98643333111000001234456666666632211
Q ss_pred ecccCcceeEeecCCCCCceeecc
Q 021080 277 DIKPMSDVDVLTVGAERPTWRQVS 300 (317)
Q Consensus 277 ~~~~~~~v~~yd~~~~~~~W~~~~ 300 (317)
....+.++|..+.+..|+.=.
T Consensus 258 ---~~g~~~~l~~~~G~~~W~~~~ 278 (370)
T COG1520 258 ---YGGKLLCLDADTGELIWSFPA 278 (370)
T ss_pred ---cCCeEEEEEcCCCceEEEEec
Confidence 233578888888877887644
No 82
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=93.93 E-value=0.68 Score=35.38 Aligned_cols=81 Identities=11% Similarity=0.109 Sum_probs=53.6
Q ss_pred EEECCEEEEEec----CceeEEEEeCCCCcEEeccCCccCCcEEEEcCeEEEEeCcEEEEecCCceEEEecccccccccc
Q 021080 177 VVIGGKVHVLHK----GLSTVQVLDHMGLGWTVEDYGWLQGPMAIVHDSVYLMSHGLIIKQHRDVRKVVASASEFRRRIG 252 (317)
Q Consensus 177 ~~~~g~lyv~gG----~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~ly~~g~~~~~~yd~~~W~~v~~~~~~~~r~~ 252 (317)
+.+||.+|.+.. ....|.+||..+++|+.++.+ . ........
T Consensus 2 icinGvly~~a~~~~~~~~~IvsFDv~~E~f~~i~~P-----~-----------------------------~~~~~~~~ 47 (129)
T PF08268_consen 2 ICINGVLYWLAWSEDSDNNVIVSFDVRSEKFRFIKLP-----E-----------------------------DPYSSDCS 47 (129)
T ss_pred EEECcEEEeEEEECCCCCcEEEEEEcCCceEEEEEee-----e-----------------------------eeccccCc
Confidence 467899998876 357899999999999888632 0 00124455
Q ss_pred EEEEEECCeEEEEeCcccCCCCceecccCcceeEee-cCCCCCceeec
Q 021080 253 FAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLT-VGAERPTWRQV 299 (317)
Q Consensus 253 ~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd-~~~~~~~W~~~ 299 (317)
..++.++|+|-++.-...... ..-++|+.+ .+++ +|...
T Consensus 48 ~~L~~~~G~L~~v~~~~~~~~------~~~~iWvLeD~~k~--~Wsk~ 87 (129)
T PF08268_consen 48 STLIEYKGKLALVSYNDQGEP------DSIDIWVLEDYEKQ--EWSKK 87 (129)
T ss_pred cEEEEeCCeEEEEEecCCCCc------ceEEEEEeeccccc--eEEEE
Confidence 678899999988765443311 123677764 4444 99866
No 83
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=93.81 E-value=3.7 Score=34.77 Aligned_cols=106 Identities=17% Similarity=0.159 Sum_probs=74.0
Q ss_pred CceEEEEEeCCCCceEEEeCCCCCEeecCCCCccccccCCeeEEEeCC--EEEEEcCcCCCCCCCCCCCCCcccccceeE
Q 021080 55 ENLLCVCAFDPENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAG--KLFVLGGGSDAVDPLTGDQDGSFATNEVWS 132 (317)
Q Consensus 55 ~~~l~v~gg~~~~~~~~yd~~~~~W~~~~~~p~~~~~r~~~~~~~~~~--~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~ 132 (317)
+..+..+||+ ..++.+|..+++-.+- +.. +......+..+. .|.+.|+.+
T Consensus 71 nskf~s~GgD--k~v~vwDV~TGkv~Rr--~rg---H~aqVNtV~fNeesSVv~SgsfD--------------------- 122 (307)
T KOG0316|consen 71 NSKFASCGGD--KAVQVWDVNTGKVDRR--FRG---HLAQVNTVRFNEESSVVASGSFD--------------------- 122 (307)
T ss_pred ccccccCCCC--ceEEEEEcccCeeeee--ccc---ccceeeEEEecCcceEEEecccc---------------------
Confidence 4456666663 5788999998764321 111 012233444543 355556542
Q ss_pred ecccCCCCCCCcCCCceeEEeeCCCCceeeCCCCCccCCCceEEEEECCEEEEEecCceeEEEEeCCCCcEE
Q 021080 133 YDPVTRGFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHNSACTGVVIGGKVHVLHKGLSTVQVLDHMGLGWT 204 (317)
Q Consensus 133 ~d~~~~G~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~r~~~~~~~~~g~lyv~gG~~~~v~~yd~~~~~W~ 204 (317)
.++.+||.+++.-+.+.-+... +.+-.++.+.+...+.|.....+-.||...++-.
T Consensus 123 ---------------~s~r~wDCRS~s~ePiQildea-~D~V~Si~v~~heIvaGS~DGtvRtydiR~G~l~ 178 (307)
T KOG0316|consen 123 ---------------SSVRLWDCRSRSFEPIQILDEA-KDGVSSIDVAEHEIVAGSVDGTVRTYDIRKGTLS 178 (307)
T ss_pred ---------------ceeEEEEcccCCCCccchhhhh-cCceeEEEecccEEEeeccCCcEEEEEeecceee
Confidence 6788899999999999888888 8888889898888888776678999999888754
No 84
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=93.48 E-value=1.4 Score=42.12 Aligned_cols=119 Identities=13% Similarity=0.076 Sum_probs=70.4
Q ss_pred EEEEECCEEEEEecCceeEEEEeCCCCc--EEeccCCc--------cCCcEEEEc-CeEEEEeC-cEEEEecCCc----e
Q 021080 175 TGVVIGGKVHVLHKGLSTVQVLDHMGLG--WTVEDYGW--------LQGPMAIVH-DSVYLMSH-GLIIKQHRDV----R 238 (317)
Q Consensus 175 ~~~~~~g~lyv~gG~~~~v~~yd~~~~~--W~~~~~~~--------~~~~~~~~~-~~ly~~g~-~~~~~yd~~~----W 238 (317)
+.++.++++|+... ...+.++|..+++ |+.-.... ...+.+..+ +++|+... +.++++|.++ |
T Consensus 56 sPvv~~g~vy~~~~-~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~~g~v~AlD~~TG~~~W 134 (488)
T cd00216 56 TPLVVDGDMYFTTS-HSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTFDGRLVALDAETGKQVW 134 (488)
T ss_pred CCEEECCEEEEeCC-CCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecCCCeEEEEECCCCCEee
Confidence 45688999999755 3679999998765 98643321 022334456 88888764 7899999765 9
Q ss_pred EEEecccc-ccccccEEEEEECCeEEEEeCcccCCCCceecccCcceeEeecCCCCCceee
Q 021080 239 KVVASASE-FRRRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAERPTWRQ 298 (317)
Q Consensus 239 ~~v~~~~~-~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~~~~W~~ 298 (317)
+.-...+. .......+.+..++.+|+ |........ ......++.+|.++++..|+.
T Consensus 135 ~~~~~~~~~~~~~i~ssP~v~~~~v~v-g~~~~~~~~---~~~~g~v~alD~~TG~~~W~~ 191 (488)
T cd00216 135 KFGNNDQVPPGYTMTGAPTIVKKLVII-GSSGAEFFA---CGVRGALRAYDVETGKLLWRF 191 (488)
T ss_pred eecCCCCcCcceEecCCCEEECCEEEE-ecccccccc---CCCCcEEEEEECCCCceeeEe
Confidence 87433221 000012233455666665 322111000 012347899999999888975
No 85
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=93.43 E-value=7.9 Score=37.42 Aligned_cols=44 Identities=16% Similarity=0.298 Sum_probs=38.7
Q ss_pred CCcCCCCcHHHHHHHhccCCCCchhhhhhcCHhHHHhhcChhhH
Q 021080 2 SELIEGLPDAVALRCLARVPFFLHPKLELVSRSWRAAIRSPELF 45 (317)
Q Consensus 2 ~~~~~~Lp~d~~~~~l~r~p~~~~~~~~~v~k~w~~l~~s~~~~ 45 (317)
+.++..||-++...+|..++.+.+..++.+|+.|+.+..+....
T Consensus 105 ~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~ 148 (537)
T KOG0274|consen 105 RDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVW 148 (537)
T ss_pred cchhhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchh
Confidence 35778899999999999999999999999999999987766543
No 86
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=92.99 E-value=2.2 Score=36.75 Aligned_cols=122 Identities=11% Similarity=0.025 Sum_probs=75.7
Q ss_pred CCceeeCCCCCccCCCceEEEEECCEEEEEecCceeEEEEeCCCCc---EEeccCCcc------------CCcEEEEcCe
Q 021080 157 KDVWVPIPDLHRTHNSACTGVVIGGKVHVLHKGLSTVQVLDHMGLG---WTVEDYGWL------------QGPMAIVHDS 221 (317)
Q Consensus 157 t~~W~~~~~~p~~~r~~~~~~~~~g~lyv~gG~~~~v~~yd~~~~~---W~~~~~~~~------------~~~~~~~~~~ 221 (317)
.++....-.+|.+ ..+.+.++++|.+|---.....|.+||+.++. +..++.... ....|+-.+.
T Consensus 56 ~~~~~~~~~Lp~~-~~GtG~vVYngslYY~~~~s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~G 134 (250)
T PF02191_consen 56 NGRSSRTYKLPYP-WQGTGHVVYNGSLYYNKYNSRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENG 134 (250)
T ss_pred cCCCceEEEEece-eccCCeEEECCcEEEEecCCceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCC
Confidence 3444444456666 67778899999999987778899999999986 445543211 1233444556
Q ss_pred EEEEeC-----c--EEEEecCCc------eEEEeccccccccccEEEEEECCeEEEEeCcccCCCCceecccCcceeEee
Q 021080 222 VYLMSH-----G--LIIKQHRDV------RKVVASASEFRRRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLT 288 (317)
Q Consensus 222 ly~~g~-----~--~~~~yd~~~------W~~v~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd 288 (317)
|+++=. + .+-+.|++. |.. ..+ ....+.++++| |.||++.-..... ..=.++||
T Consensus 135 LWvIYat~~~~g~ivvskld~~tL~v~~tw~T--~~~--k~~~~naFmvC-GvLY~~~s~~~~~--------~~I~yafD 201 (250)
T PF02191_consen 135 LWVIYATEDNNGNIVVSKLDPETLSVEQTWNT--SYP--KRSAGNAFMVC-GVLYATDSYDTRD--------TEIFYAFD 201 (250)
T ss_pred EEEEEecCCCCCcEEEEeeCcccCceEEEEEe--ccC--chhhcceeeEe-eEEEEEEECCCCC--------cEEEEEEE
Confidence 666621 1 234556553 775 233 23344455555 8899997766542 12346899
Q ss_pred cCCC
Q 021080 289 VGAE 292 (317)
Q Consensus 289 ~~~~ 292 (317)
..++
T Consensus 202 t~t~ 205 (250)
T PF02191_consen 202 TYTG 205 (250)
T ss_pred CCCC
Confidence 9888
No 87
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=92.92 E-value=4.6 Score=33.28 Aligned_cols=96 Identities=11% Similarity=0.026 Sum_probs=54.7
Q ss_pred CEEEEEecCceeEEEEeCCCCcEE---eccC--Cc---cCCcEEE-E--cCeEEEEeCcEEEEecCCceEEEec------
Q 021080 181 GKVHVLHKGLSTVQVLDHMGLGWT---VEDY--GW---LQGPMAI-V--HDSVYLMSHGLIIKQHRDVRKVVAS------ 243 (317)
Q Consensus 181 g~lyv~gG~~~~v~~yd~~~~~W~---~~~~--~~---~~~~~~~-~--~~~ly~~g~~~~~~yd~~~W~~v~~------ 243 (317)
|++|++-| +..++||..+.... .+.. .+ ....+|. . ++++|++.|+..+.|+...-+....
T Consensus 63 ~~~yfFkg--~~yw~~~~~~~~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg~~y~ry~~~~~~v~~~yP~~i~ 140 (194)
T cd00094 63 GKIYFFKG--DKYWVYTGKNLEPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKGDKYWRYDEKTQKMDPGYPKLIE 140 (194)
T ss_pred CEEEEECC--CEEEEEcCcccccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEeCCEEEEEeCCCccccCCCCcchh
Confidence 89999965 46777876542221 1111 00 1122332 2 5799999999999998644221111
Q ss_pred --cccccccccEEEEEECCeEEEEeCcccCCCCceecccCcceeEeecCCC
Q 021080 244 --ASEFRRRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAE 292 (317)
Q Consensus 244 --~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~ 292 (317)
.+........++...++++|++-| +..+.||..++
T Consensus 141 ~~w~g~p~~idaa~~~~~~~~yfF~g--------------~~y~~~d~~~~ 177 (194)
T cd00094 141 TDFPGVPDKVDAAFRWLDGYYYFFKG--------------DQYWRFDPRSK 177 (194)
T ss_pred hcCCCcCCCcceeEEeCCCcEEEEEC--------------CEEEEEeCccc
Confidence 111111233344343489999977 37788998877
No 88
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=92.64 E-value=7.9 Score=35.34 Aligned_cols=137 Identities=15% Similarity=0.080 Sum_probs=80.7
Q ss_pred eeEEeeCCCCc--eeeCCCCCccCCCceEEEEECCEEEEEecCceeEEEEeCCCC--cEEeccCC-cc-CCcEEEEcCeE
Q 021080 149 QAEMYDPEKDV--WVPIPDLHRTHNSACTGVVIGGKVHVLHKGLSTVQVLDHMGL--GWTVEDYG-WL-QGPMAIVHDSV 222 (317)
Q Consensus 149 ~~~~yd~~t~~--W~~~~~~p~~~r~~~~~~~~~g~lyv~gG~~~~v~~yd~~~~--~W~~~~~~-~~-~~~~~~~~~~l 222 (317)
.+..+|+++.+ |+....-... ........-+|+||+-.. ...+++||..++ .|+.-... +. ..+.+..++.+
T Consensus 79 ~i~A~d~~~g~~~W~~~~~~~~~-~~~~~~~~~~G~i~~g~~-~g~~y~ld~~~G~~~W~~~~~~~~~~~~~~v~~~~~v 156 (370)
T COG1520 79 NIFALNPDTGLVKWSYPLLGAVA-QLSGPILGSDGKIYVGSW-DGKLYALDASTGTLVWSRNVGGSPYYASPPVVGDGTV 156 (370)
T ss_pred cEEEEeCCCCcEEecccCcCcce-eccCceEEeCCeEEEecc-cceEEEEECCCCcEEEEEecCCCeEEecCcEEcCcEE
Confidence 45566666665 8654321011 111223333899887654 337999999544 58866544 22 34455667788
Q ss_pred EEE-eCcEEEEecCCc----eEEEeccccccccccEEEEEECCeEEEEeCcccCCCCceecccCcceeEeecCCCCCcee
Q 021080 223 YLM-SHGLIIKQHRDV----RKVVASASEFRRRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAERPTWR 297 (317)
Q Consensus 223 y~~-g~~~~~~yd~~~----W~~v~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~~~~W~ 297 (317)
|+. ..+.++.++.++ |+.-...+ ...+.....+...+.+|+..-. .. ..++.+|++++...|+
T Consensus 157 ~~~s~~g~~~al~~~tG~~~W~~~~~~~-~~~~~~~~~~~~~~~vy~~~~~-~~----------~~~~a~~~~~G~~~w~ 224 (370)
T COG1520 157 YVGTDDGHLYALNADTGTLKWTYETPAP-LSLSIYGSPAIASGTVYVGSDG-YD----------GILYALNAEDGTLKWS 224 (370)
T ss_pred EEecCCCeEEEEEccCCcEEEEEecCCc-cccccccCceeecceEEEecCC-Cc----------ceEEEEEccCCcEeee
Confidence 888 468899998774 98554432 1223333333556777765322 11 1678899988888898
Q ss_pred ec
Q 021080 298 QV 299 (317)
Q Consensus 298 ~~ 299 (317)
.-
T Consensus 225 ~~ 226 (370)
T COG1520 225 QK 226 (370)
T ss_pred ee
Confidence 54
No 89
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=91.97 E-value=4.9 Score=37.14 Aligned_cols=127 Identities=11% Similarity=0.023 Sum_probs=70.7
Q ss_pred ceeEEeeCCCCceeeCCCCCccCCC--ceEEEEECCE-EEEEecCceeEEEEeCCCCcEEeccCCcc-------CCcEEE
Q 021080 148 SQAEMYDPEKDVWVPIPDLHRTHNS--ACTGVVIGGK-VHVLHKGLSTVQVLDHMGLGWTVEDYGWL-------QGPMAI 217 (317)
Q Consensus 148 ~~~~~yd~~t~~W~~~~~~p~~~r~--~~~~~~~~g~-lyv~gG~~~~v~~yd~~~~~W~~~~~~~~-------~~~~~~ 217 (317)
-.++.-|-++|. .+.++... ++ ..+...-+|. ..+.+|...-.+.||+++.+-+.+.++.. ...++-
T Consensus 237 lrifqvDGk~N~--~lqS~~l~-~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVSh 313 (514)
T KOG2055|consen 237 LRIFQVDGKVNP--KLQSIHLE-KFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSH 313 (514)
T ss_pred EEEEEecCccCh--hheeeeec-cCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecC
Confidence 344555556665 44444332 11 1223333565 77777767789999999999888876543 122222
Q ss_pred EcCeEEEEeC-cEEEEecCCc--eEEEeccccccccccEEEEEECCeEEEEeCcccCCCCceecccCcceeEeecCCC
Q 021080 218 VHDSVYLMSH-GLIIKQHRDV--RKVVASASEFRRRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAE 292 (317)
Q Consensus 218 ~~~~ly~~g~-~~~~~yd~~~--W~~v~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~ 292 (317)
.++.|-+.|. +.+......+ |-.--.++ -....+.+...+.+|++.||. .+||+||+.+.
T Consensus 314 d~~fia~~G~~G~I~lLhakT~eli~s~Kie--G~v~~~~fsSdsk~l~~~~~~-------------GeV~v~nl~~~ 376 (514)
T KOG2055|consen 314 DSNFIAIAGNNGHIHLLHAKTKELITSFKIE--GVVSDFTFSSDSKELLASGGT-------------GEVYVWNLRQN 376 (514)
T ss_pred CCCeEEEcccCceEEeehhhhhhhhheeeec--cEEeeEEEecCCcEEEEEcCC-------------ceEEEEecCCc
Confidence 3333333332 5666666555 54333333 122333334445677888773 28899999987
No 90
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=91.83 E-value=11 Score=35.10 Aligned_cols=118 Identities=14% Similarity=0.059 Sum_probs=59.0
Q ss_pred eeEEeeCCCCceeeCCCCCccCCCceEEEEE-CCEEEEEecCceeEEEEeCCCCcEEeccCCccCCcEEEE------cCe
Q 021080 149 QAEMYDPEKDVWVPIPDLHRTHNSACTGVVI-GGKVHVLHKGLSTVQVLDHMGLGWTVEDYGWLQGPMAIV------HDS 221 (317)
Q Consensus 149 ~~~~yd~~t~~W~~~~~~p~~~r~~~~~~~~-~g~lyv~gG~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~------~~~ 221 (317)
.+-.||.++.+ ..+-.+..+..-. ....+ .|.+++..| .+.+-++|+.++.=. +..+..+...+++ +-+
T Consensus 177 ~vrl~DtR~~~-~~v~elnhg~pVe-~vl~lpsgs~iasAg-Gn~vkVWDl~~G~ql-l~~~~~H~KtVTcL~l~s~~~r 252 (487)
T KOG0310|consen 177 KVRLWDTRSLT-SRVVELNHGCPVE-SVLALPSGSLIASAG-GNSVKVWDLTTGGQL-LTSMFNHNKTVTCLRLASDSTR 252 (487)
T ss_pred eEEEEEeccCC-ceeEEecCCCcee-eEEEcCCCCEEEEcC-CCeEEEEEecCCcee-hhhhhcccceEEEEEeecCCce
Confidence 34556666663 2223332221111 23333 445555544 356888888755411 1111112223222 234
Q ss_pred EEEEeC-cEEEEecCCceEEEeccccccccccEEEEEECCeEEEEeCcccC
Q 021080 222 VYLMSH-GLIIKQHRDVRKVVASASEFRRRIGFAMIGMGDDIYVIGGVIGP 271 (317)
Q Consensus 222 ly~~g~-~~~~~yd~~~W~~v~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~ 271 (317)
|+..+- +.+..||...|+.+-.+.-+.+--.. .++-+|.-.++|+.++.
T Consensus 253 LlS~sLD~~VKVfd~t~~Kvv~s~~~~~pvLsi-avs~dd~t~viGmsnGl 302 (487)
T KOG0310|consen 253 LLSGSLDRHVKVFDTTNYKVVHSWKYPGPVLSI-AVSPDDQTVVIGMSNGL 302 (487)
T ss_pred EeecccccceEEEEccceEEEEeeecccceeeE-EecCCCceEEEecccce
Confidence 444443 78999998889998877632222222 12336777788876543
No 91
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=91.12 E-value=7.6 Score=31.96 Aligned_cols=56 Identities=9% Similarity=-0.015 Sum_probs=35.3
Q ss_pred CCEEEEEecCceeEEEEeCCCCcEEe-----ccCCcc----CCcEE-EE-cCeEEEEeCcEEEEecCCc
Q 021080 180 GGKVHVLHKGLSTVQVLDHMGLGWTV-----EDYGWL----QGPMA-IV-HDSVYLMSHGLIIKQHRDV 237 (317)
Q Consensus 180 ~g~lyv~gG~~~~v~~yd~~~~~W~~-----~~~~~~----~~~~~-~~-~~~ly~~g~~~~~~yd~~~ 237 (317)
++++|++.| +..+.||..+++... +...++ ...+| .. ++++|++.|+..+.||...
T Consensus 110 ~~~~yfFkg--~~y~ry~~~~~~v~~~yP~~i~~~w~g~p~~idaa~~~~~~~~yfF~g~~y~~~d~~~ 176 (194)
T cd00094 110 NGKTYFFKG--DKYWRYDEKTQKMDPGYPKLIETDFPGVPDKVDAAFRWLDGYYYFFKGDQYWRFDPRS 176 (194)
T ss_pred CCEEEEEeC--CEEEEEeCCCccccCCCCcchhhcCCCcCCCcceeEEeCCCcEEEEECCEEEEEeCcc
Confidence 689999977 567788875554321 111111 12222 23 3889999999999998754
No 92
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=90.90 E-value=6.5 Score=33.47 Aligned_cols=112 Identities=16% Similarity=0.052 Sum_probs=69.2
Q ss_pred CCEEEEEecCceeEEEEeCCCCcEEeccCCccCCcEEEE--cCeEEEEeCcEEEEecCCc--eEEEecccc---cccccc
Q 021080 180 GGKVHVLHKGLSTVQVLDHMGLGWTVEDYGWLQGPMAIV--HDSVYLMSHGLIIKQHRDV--RKVVASASE---FRRRIG 252 (317)
Q Consensus 180 ~g~lyv~gG~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~--~~~ly~~g~~~~~~yd~~~--W~~v~~~~~---~~~r~~ 252 (317)
++.||+..-....++.+|+.++.-+.+.... +..++.. ++++|+.....+..+|+++ ++.+...+. ...+.+
T Consensus 11 ~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~-~~G~~~~~~~g~l~v~~~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~N 89 (246)
T PF08450_consen 11 DGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG-PNGMAFDRPDGRLYVADSGGIAVVDPDTGKVTVLADLPDGGVPFNRPN 89 (246)
T ss_dssp TTEEEEEETTTTEEEEEETTTTEEEEEESSS-EEEEEEECTTSEEEEEETTCEEEEETTTTEEEEEEEEETTCSCTEEEE
T ss_pred CCEEEEEEcCCCEEEEEECCCCeEEEEecCC-CceEEEEccCCEEEEEEcCceEEEecCCCcEEEEeeccCCCcccCCCc
Confidence 5889998766678999999998866554332 2233333 6899999987777778765 777776641 234454
Q ss_pred EEEEEECCeEEEEeCcccCCCCceecccCcceeEeecCCCCCceeec
Q 021080 253 FAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAERPTWRQV 299 (317)
Q Consensus 253 ~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~~~~W~~~ 299 (317)
-..+.-+|.||+..-....... .....++++++. + +.+.+
T Consensus 90 D~~vd~~G~ly~t~~~~~~~~~----~~~g~v~~~~~~-~--~~~~~ 129 (246)
T PF08450_consen 90 DVAVDPDGNLYVTDSGGGGASG----IDPGSVYRIDPD-G--KVTVV 129 (246)
T ss_dssp EEEE-TTS-EEEEEECCBCTTC----GGSEEEEEEETT-S--EEEEE
T ss_pred eEEEcCCCCEEEEecCCCcccc----ccccceEEECCC-C--eEEEE
Confidence 4455557888887432222110 011468888887 4 54444
No 93
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=90.87 E-value=9.7 Score=32.75 Aligned_cols=89 Identities=16% Similarity=0.061 Sum_probs=45.8
Q ss_pred ceeEEeeCCCCceeeCCCCC-ccCCCceEEEEECC-EEEEEecCceeEEEEeCCCCcEEe-ccCCccCCcEEEE--cCeE
Q 021080 148 SQAEMYDPEKDVWVPIPDLH-RTHNSACTGVVIGG-KVHVLHKGLSTVQVLDHMGLGWTV-EDYGWLQGPMAIV--HDSV 222 (317)
Q Consensus 148 ~~~~~yd~~t~~W~~~~~~p-~~~r~~~~~~~~~g-~lyv~gG~~~~v~~yd~~~~~W~~-~~~~~~~~~~~~~--~~~l 222 (317)
..+.+||+.+++-...-... .+ + ..+..-++ .+|+.++....+..||..+.+... ++........+.. ++.+
T Consensus 11 ~~v~~~d~~t~~~~~~~~~~~~~-~--~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l 87 (300)
T TIGR03866 11 NTISVIDTATLEVTRTFPVGQRP-R--GITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPELFALHPNGKIL 87 (300)
T ss_pred CEEEEEECCCCceEEEEECCCCC-C--ceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccEEEECCCCCEE
Confidence 35666776665432221111 11 1 11222344 577777666779999998876543 2221111122221 3356
Q ss_pred EEEeC--cEEEEecCCceE
Q 021080 223 YLMSH--GLIIKQHRDVRK 239 (317)
Q Consensus 223 y~~g~--~~~~~yd~~~W~ 239 (317)
|+.+. +.+..||.++-+
T Consensus 88 ~~~~~~~~~l~~~d~~~~~ 106 (300)
T TIGR03866 88 YIANEDDNLVTVIDIETRK 106 (300)
T ss_pred EEEcCCCCeEEEEECCCCe
Confidence 66643 678888887633
No 94
>PRK13684 Ycf48-like protein; Provisional
Probab=89.40 E-value=16 Score=32.98 Aligned_cols=109 Identities=12% Similarity=0.174 Sum_probs=56.5
Q ss_pred eCCCCceeeCCCCCccCCCceEE-EEECCEEEEEecCceeEEEE--eCCCCcEEeccCCcc-----CCcEEEE-cCeEEE
Q 021080 154 DPEKDVWVPIPDLHRTHNSACTG-VVIGGKVHVLHKGLSTVQVL--DHMGLGWTVEDYGWL-----QGPMAIV-HDSVYL 224 (317)
Q Consensus 154 d~~t~~W~~~~~~p~~~r~~~~~-~~~~g~lyv~gG~~~~v~~y--d~~~~~W~~~~~~~~-----~~~~~~~-~~~ly~ 224 (317)
|....+|+.+... .. +..... ..-++.++++|.. . ...+ +-.-.+|+.+..... ...++.. ++.+++
T Consensus 200 ~~gg~tW~~~~~~-~~-~~l~~i~~~~~g~~~~vg~~-G-~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~ 275 (334)
T PRK13684 200 EPGQTAWTPHQRN-SS-RRLQSMGFQPDGNLWMLARG-G-QIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWA 275 (334)
T ss_pred CCCCCeEEEeeCC-Cc-ccceeeeEcCCCCEEEEecC-C-EEEEccCCCCCccccccCCccccccceeeEEEcCCCCEEE
Confidence 3344679887543 32 223333 3357788888762 2 2334 223457997543211 1122222 668999
Q ss_pred EeC-c-EEEEecCCc-eEEEeccccccccccEEEEEE-CCeEEEEeC
Q 021080 225 MSH-G-LIIKQHRDV-RKVVASASEFRRRIGFAMIGM-GDDIYVIGG 267 (317)
Q Consensus 225 ~g~-~-~~~~yd~~~-W~~v~~~~~~~~r~~~~~~~~-~~~lyv~GG 267 (317)
++. + .+...|..+ |+.+...+. .......++.. ++++|+.|.
T Consensus 276 ~G~~G~v~~S~d~G~tW~~~~~~~~-~~~~~~~~~~~~~~~~~~~G~ 321 (334)
T PRK13684 276 GGGNGTLLVSKDGGKTWEKDPVGEE-VPSNFYKIVFLDPEKGFVLGQ 321 (334)
T ss_pred EcCCCeEEEeCCCCCCCeECCcCCC-CCcceEEEEEeCCCceEEECC
Confidence 876 3 344455444 999754221 11123344444 677877765
No 95
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=88.68 E-value=22 Score=33.63 Aligned_cols=56 Identities=14% Similarity=0.018 Sum_probs=34.2
Q ss_pred ceeEEeeCCCCceeeCCCCCccCCCceEEEEECCEEEEEecCceeEEEEeCCCCcEE
Q 021080 148 SQAEMYDPEKDVWVPIPDLHRTHNSACTGVVIGGKVHVLHKGLSTVQVLDHMGLGWT 204 (317)
Q Consensus 148 ~~~~~yd~~t~~W~~~~~~p~~~r~~~~~~~~~g~lyv~gG~~~~v~~yd~~~~~W~ 204 (317)
..+.++|.++.+-...-+-... .....+..-++.+++.+.....+..||..++.-.
T Consensus 268 ~tvriWd~~~~~~~~~l~~hs~-~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~ 323 (456)
T KOG0266|consen 268 GTVRIWDVRTGECVRKLKGHSD-GISGLAFSPDGNLLVSASYDGTIRVWDLETGSKL 323 (456)
T ss_pred CcEEEEeccCCeEEEeeeccCC-ceEEEEECCCCCEEEEcCCCccEEEEECCCCcee
Confidence 5677788887554433222222 2222233446777777776778999999988843
No 96
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=87.03 E-value=37 Score=34.43 Aligned_cols=122 Identities=13% Similarity=0.016 Sum_probs=66.0
Q ss_pred EEECCEEEEEecCceeEEEEeCCCCc--EEecc-----------CCc-----cCCcEEEEcCeEEEEe-----------C
Q 021080 177 VVIGGKVHVLHKGLSTVQVLDHMGLG--WTVED-----------YGW-----LQGPMAIVHDSVYLMS-----------H 227 (317)
Q Consensus 177 ~~~~g~lyv~gG~~~~v~~yd~~~~~--W~~~~-----------~~~-----~~~~~~~~~~~ly~~g-----------~ 227 (317)
++++++||+-.. ...+.++|.++++ |+--. ... ...+-++.+|.+++-+ .
T Consensus 257 ~~~~~rV~~~T~-Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~ 335 (764)
T TIGR03074 257 ADCARRIILPTS-DARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPS 335 (764)
T ss_pred cccCCEEEEecC-CCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCC
Confidence 356677776433 4567888877665 64211 111 0234456788888743 2
Q ss_pred cEEEEecCCc----eEEEeccccc---------cccccE---EEEEE---CCeEEEEeCcccCC---CCc--eecccCcc
Q 021080 228 GLIIKQHRDV----RKVVASASEF---------RRRIGF---AMIGM---GDDIYVIGGVIGPD---RWN--WDIKPMSD 283 (317)
Q Consensus 228 ~~~~~yd~~~----W~~v~~~~~~---------~~r~~~---~~~~~---~~~lyv~GG~~~~~---~~~--~~~~~~~~ 283 (317)
+.+..||.++ |+.-..-|.. ..+.+. ...++ .|.+|+=-|..... ... .+..+.+.
T Consensus 336 G~I~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~s 415 (764)
T TIGR03074 336 GVIRAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSS 415 (764)
T ss_pred cEEEEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccce
Confidence 5689999876 8754321110 001110 12233 25666644432221 000 11246778
Q ss_pred eeEeecCCCCCceeec
Q 021080 284 VDVLTVGAERPTWRQV 299 (317)
Q Consensus 284 v~~yd~~~~~~~W~~~ 299 (317)
+...|+++++.+|...
T Consensus 416 lvALD~~TGk~~W~~Q 431 (764)
T TIGR03074 416 LVALDATTGKERWVFQ 431 (764)
T ss_pred EEEEeCCCCceEEEec
Confidence 9999999998899764
No 97
>PRK04792 tolB translocation protein TolB; Provisional
Probab=86.09 E-value=31 Score=32.55 Aligned_cols=93 Identities=10% Similarity=0.046 Sum_probs=49.6
Q ss_pred ceeEEeeCCCCceeeCCCCCccCCCceEEEEECC-EEEEEec--CceeEEEEeCCCCcEEeccCCcc--CCcEEEEcC-e
Q 021080 148 SQAEMYDPEKDVWVPIPDLHRTHNSACTGVVIGG-KVHVLHK--GLSTVQVLDHMGLGWTVEDYGWL--QGPMAIVHD-S 221 (317)
Q Consensus 148 ~~~~~yd~~t~~W~~~~~~p~~~r~~~~~~~~~g-~lyv~gG--~~~~v~~yd~~~~~W~~~~~~~~--~~~~~~~~~-~ 221 (317)
.+++++|..+++.+.+..-... ... ....-+| .|++... ....++.+|+.+++++.+..... ..+...-+| .
T Consensus 286 ~~Iy~~dl~tg~~~~lt~~~~~-~~~-p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~ 363 (448)
T PRK04792 286 PEIYVVDIATKALTRITRHRAI-DTE-PSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRS 363 (448)
T ss_pred eEEEEEECCCCCeEECccCCCC-ccc-eEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCE
Confidence 4677788888877776543211 111 1222344 4555443 34678999999888877642111 112222244 4
Q ss_pred EEEEeC----cEEEEecCCc--eEEEe
Q 021080 222 VYLMSH----GLIIKQHRDV--RKVVA 242 (317)
Q Consensus 222 ly~~g~----~~~~~yd~~~--W~~v~ 242 (317)
|++... ..++.+|.+. .+.+.
T Consensus 364 l~~~~~~~g~~~I~~~dl~~g~~~~lt 390 (448)
T PRK04792 364 MIMVNRTNGKFNIARQDLETGAMQVLT 390 (448)
T ss_pred EEEEEecCCceEEEEEECCCCCeEEcc
Confidence 555432 3677777665 55443
No 98
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=84.97 E-value=28 Score=31.02 Aligned_cols=140 Identities=9% Similarity=-0.086 Sum_probs=68.2
Q ss_pred eEEEEEeCCCCceEEEeCCC-CCEeecCCCCccccccCCeeEEE--eCCEEEEEcCcCCCCCCCCCCCCCcccccceeEe
Q 021080 57 LLCVCAFDPENLWQLYDPLR-DLWITLPVLPSKIRHLAHFGVVS--TAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSY 133 (317)
Q Consensus 57 ~l~v~gg~~~~~~~~yd~~~-~~W~~~~~~p~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~ 133 (317)
++|+.... ...+..||..+ +++..+...+.. -....++. -+..+|+.+...
T Consensus 3 ~~y~~~~~-~~~I~~~~~~~~g~l~~~~~~~~~---~~~~~l~~spd~~~lyv~~~~~---------------------- 56 (330)
T PRK11028 3 IVYIASPE-SQQIHVWNLNHEGALTLLQVVDVP---GQVQPMVISPDKRHLYVGVRPE---------------------- 56 (330)
T ss_pred EEEEEcCC-CCCEEEEEECCCCceeeeeEEecC---CCCccEEECCCCCEEEEEECCC----------------------
Confidence 56766443 36788888854 566655544432 11122322 245677754311
Q ss_pred cccCCCCCCCcCCCceeEEeeCC-CCceeeCCCCCccCCCceEEEE-ECC-EEEEEecCceeEEEEeCCCCc--EEecc-
Q 021080 134 DPVTRGFTSCRKSISQAEMYDPE-KDVWVPIPDLHRTHNSACTGVV-IGG-KVHVLHKGLSTVQVLDHMGLG--WTVED- 207 (317)
Q Consensus 134 d~~~~G~~~~~~~~~~~~~yd~~-t~~W~~~~~~p~~~r~~~~~~~-~~g-~lyv~gG~~~~v~~yd~~~~~--W~~~~- 207 (317)
..+.+|+.. +++++.+...+.+ ...+..+. -+| .+|+.....+.+.+||+.++. ...+.
T Consensus 57 --------------~~i~~~~~~~~g~l~~~~~~~~~-~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~ 121 (330)
T PRK11028 57 --------------FRVLSYRIADDGALTFAAESPLP-GSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQI 121 (330)
T ss_pred --------------CcEEEEEECCCCceEEeeeecCC-CCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceee
Confidence 234445543 4456555433332 21222222 244 477665445678888876431 11111
Q ss_pred --CCccCCcEEEE-c-CeEEEEeC--cEEEEecCCc
Q 021080 208 --YGWLQGPMAIV-H-DSVYLMSH--GLIIKQHRDV 237 (317)
Q Consensus 208 --~~~~~~~~~~~-~-~~ly~~g~--~~~~~yd~~~ 237 (317)
....++.++.. + ..+|+.+. +.+..||.+.
T Consensus 122 ~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~ 157 (330)
T PRK11028 122 IEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSD 157 (330)
T ss_pred ccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECC
Confidence 11112333222 3 35666653 7788888755
No 99
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=84.88 E-value=38 Score=32.58 Aligned_cols=111 Identities=14% Similarity=0.132 Sum_probs=57.7
Q ss_pred ceEEEEEeCCCCceEEEeCCCCCEeecCCCCccccccCCeeEEEe--CCEEEEEcCcCCCCCCCCCCCCCcccccceeEe
Q 021080 56 NLLCVCAFDPENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVST--AGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSY 133 (317)
Q Consensus 56 ~~l~v~gg~~~~~~~~yd~~~~~W~~~~~~p~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~ 133 (317)
.-||+.|. .+++|.+|.++++|-. ++... -....++.+ -+.++++|+.++ .|..+
T Consensus 146 cDly~~gs--g~evYRlNLEqGrfL~--P~~~~---~~~lN~v~in~~hgLla~Gt~~g----------------~VEfw 202 (703)
T KOG2321|consen 146 CDLYLVGS--GSEVYRLNLEQGRFLN--PFETD---SGELNVVSINEEHGLLACGTEDG----------------VVEFW 202 (703)
T ss_pred ccEEEeec--CcceEEEEcccccccc--ccccc---cccceeeeecCccceEEecccCc----------------eEEEe
Confidence 34666554 4799999999999964 22221 112223333 346888888542 34444
Q ss_pred cccCCCCCCCcCCCceeEEeeCCCCceeeCCCCCccC-CCceEEEEE-CCEEEEEec-CceeEEEEeCCCCc
Q 021080 134 DPVTRGFTSCRKSISQAEMYDPEKDVWVPIPDLHRTH-NSACTGVVI-GGKVHVLHK-GLSTVQVLDHMGLG 202 (317)
Q Consensus 134 d~~~~G~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~-r~~~~~~~~-~g~lyv~gG-~~~~v~~yd~~~~~ 202 (317)
||..+ +.+-..|..++ +.+.|... ....+++.+ |+-|.+.-| ....++.||+.+.+
T Consensus 203 DpR~k---------srv~~l~~~~~----v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~ 261 (703)
T KOG2321|consen 203 DPRDK---------SRVGTLDAASS----VNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASK 261 (703)
T ss_pred cchhh---------hhheeeecccc----cCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCC
Confidence 44332 11111111111 22222220 112234444 447777666 66789999998765
No 100
>PRK04792 tolB translocation protein TolB; Provisional
Probab=83.74 E-value=39 Score=31.82 Aligned_cols=136 Identities=12% Similarity=0.070 Sum_probs=69.5
Q ss_pred ceeEEeeCCCCceeeCCCCCccCCCceEEEEECC-EEEEEec--CceeEEEEeCCCCcEEeccCCcc--CCcEEEEcC-e
Q 021080 148 SQAEMYDPEKDVWVPIPDLHRTHNSACTGVVIGG-KVHVLHK--GLSTVQVLDHMGLGWTVEDYGWL--QGPMAIVHD-S 221 (317)
Q Consensus 148 ~~~~~yd~~t~~W~~~~~~p~~~r~~~~~~~~~g-~lyv~gG--~~~~v~~yd~~~~~W~~~~~~~~--~~~~~~~~~-~ 221 (317)
..++++|..+++-+.+...+.. .... +..-|| +|++... ....++.+|..+++.+.+..... ..+.-.-++ .
T Consensus 242 ~~L~~~dl~tg~~~~lt~~~g~-~~~~-~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~ 319 (448)
T PRK04792 242 AEIFVQDIYTQVREKVTSFPGI-NGAP-RFSPDGKKLALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKS 319 (448)
T ss_pred cEEEEEECCCCCeEEecCCCCC-cCCe-eECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCE
Confidence 4677778777766666544332 2211 222244 4555432 34579999999988877754322 111112244 4
Q ss_pred EEEEeC----cEEEEecCCc--eEEEeccccccccccEEEEEECCeEEEEeCcccCCCCceecccCcceeEeecCCCCCc
Q 021080 222 VYLMSH----GLIIKQHRDV--RKVVASASEFRRRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAERPT 295 (317)
Q Consensus 222 ly~~g~----~~~~~yd~~~--W~~v~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~~~~ 295 (317)
|++... ..++.+|.+. ++.+..-. ..-.......-++.|++.+... ....++++|+.++ +
T Consensus 320 I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g--~~~~~~~~SpDG~~l~~~~~~~----------g~~~I~~~dl~~g--~ 385 (448)
T PRK04792 320 LIFTSERGGKPQIYRVNLASGKVSRLTFEG--EQNLGGSITPDGRSMIMVNRTN----------GKFNIARQDLETG--A 385 (448)
T ss_pred EEEEECCCCCceEEEEECCCCCEEEEecCC--CCCcCeeECCCCCEEEEEEecC----------CceEEEEEECCCC--C
Confidence 544432 4688888754 77664211 0111122222344555543221 1236778888777 6
Q ss_pred eeec
Q 021080 296 WRQV 299 (317)
Q Consensus 296 W~~~ 299 (317)
.+.+
T Consensus 386 ~~~l 389 (448)
T PRK04792 386 MQVL 389 (448)
T ss_pred eEEc
Confidence 5554
No 101
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=82.34 E-value=36 Score=30.31 Aligned_cols=109 Identities=6% Similarity=-0.122 Sum_probs=63.5
Q ss_pred eeEEEEeCCCC-----cEEeccCCcc---CCcEEEEcCeEEEEeCcEEEEec--CCc-eEEEeccccccccccEEEEEEC
Q 021080 191 STVQVLDHMGL-----GWTVEDYGWL---QGPMAIVHDSVYLMSHGLIIKQH--RDV-RKVVASASEFRRRIGFAMIGMG 259 (317)
Q Consensus 191 ~~v~~yd~~~~-----~W~~~~~~~~---~~~~~~~~~~ly~~g~~~~~~yd--~~~-W~~v~~~~~~~~r~~~~~~~~~ 259 (317)
..+..|+.... ++..+..... -.+++.+++++.+..|+.++.|+ .++ +.....+.. .-....+.+.+
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~~~lv~~~g~~l~v~~l~~~~~l~~~~~~~~--~~~i~sl~~~~ 139 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFNGRLVVAVGNKLYVYDLDNSKTLLKKAFYDS--PFYITSLSVFK 139 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEETTEEEEEETTEEEEEEEETTSSEEEEEEE-B--SSSEEEEEEET
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhCCEEEEeecCEEEEEEccCcccchhhheecc--eEEEEEEeccc
Confidence 56888888774 4554432221 23445668898777888877775 444 888777763 22555667778
Q ss_pred CeEEEEeCcccCCCCceecccCcceeEeecCCCCCceeecccCCCCCCceeeeeEe
Q 021080 260 DDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAERPTWRQVSPMTRCRGTILGCTQL 315 (317)
Q Consensus 260 ~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~~~~W~~~~~~p~~~~~~~~~~~~ 315 (317)
+.|++-.-..+- .+..|+.+.. +-..++.-+.++.- .+|..+
T Consensus 140 ~~I~vgD~~~sv-----------~~~~~~~~~~--~l~~va~d~~~~~v-~~~~~l 181 (321)
T PF03178_consen 140 NYILVGDAMKSV-----------SLLRYDEENN--KLILVARDYQPRWV-TAAEFL 181 (321)
T ss_dssp TEEEEEESSSSE-----------EEEEEETTTE---EEEEEEESS-BEE-EEEEEE
T ss_pred cEEEEEEcccCE-----------EEEEEEccCC--EEEEEEecCCCccE-EEEEEe
Confidence 877765333222 4556676555 56666654555553 455544
No 102
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=82.14 E-value=41 Score=30.92 Aligned_cols=93 Identities=10% Similarity=0.023 Sum_probs=48.7
Q ss_pred ceeEEeeCCCCceeeCCCCCccCCCceEEEEECC-EEEEEec--CceeEEEEeCCCCcEEeccCCcc--CCcEEEEcCeE
Q 021080 148 SQAEMYDPEKDVWVPIPDLHRTHNSACTGVVIGG-KVHVLHK--GLSTVQVLDHMGLGWTVEDYGWL--QGPMAIVHDSV 222 (317)
Q Consensus 148 ~~~~~yd~~t~~W~~~~~~p~~~r~~~~~~~~~g-~lyv~gG--~~~~v~~yd~~~~~W~~~~~~~~--~~~~~~~~~~l 222 (317)
.+++.+|..+++.+.+...... .... ...-+| +|++... ....++.+|..+..+..+..... ..+...-+++.
T Consensus 258 ~~i~~~d~~~~~~~~l~~~~~~-~~~~-~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~ 335 (417)
T TIGR02800 258 PDIYVMDLDGKQLTRLTNGPGI-DTEP-SWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDL 335 (417)
T ss_pred ccEEEEECCCCCEEECCCCCCC-CCCE-EECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCeEECCCCCE
Confidence 4577777777776666443222 1111 112244 4554433 23478999998888776653222 11222234544
Q ss_pred EEE-eC----cEEEEecCCc--eEEEe
Q 021080 223 YLM-SH----GLIIKQHRDV--RKVVA 242 (317)
Q Consensus 223 y~~-g~----~~~~~yd~~~--W~~v~ 242 (317)
+++ .. ..++.+|... ++.+.
T Consensus 336 i~~~~~~~~~~~i~~~d~~~~~~~~l~ 362 (417)
T TIGR02800 336 IAFVHREGGGFNIAVMDLDGGGERVLT 362 (417)
T ss_pred EEEEEccCCceEEEEEeCCCCCeEEcc
Confidence 443 32 2788888776 44443
No 103
>PRK13684 Ycf48-like protein; Provisional
Probab=81.36 E-value=41 Score=30.33 Aligned_cols=109 Identities=10% Similarity=0.029 Sum_probs=54.4
Q ss_pred CCCceeeCCCCCccCCCceEEEEECCEEEEEecCceeEEE-EeCCCCcEEeccCCcc--CCcEE-EEcCeEEEEeCcEEE
Q 021080 156 EKDVWVPIPDLHRTHNSACTGVVIGGKVHVLHKGLSTVQV-LDHMGLGWTVEDYGWL--QGPMA-IVHDSVYLMSHGLII 231 (317)
Q Consensus 156 ~t~~W~~~~~~p~~~r~~~~~~~~~g~lyv~gG~~~~v~~-yd~~~~~W~~~~~~~~--~~~~~-~~~~~ly~~g~~~~~ 231 (317)
.-.+|+.+...... .........+..|++.|....++. .|....+|+.+..... ...++ .-++++++++.....
T Consensus 160 gG~tW~~~~~~~~g--~~~~i~~~~~g~~v~~g~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~G~~ 237 (334)
T PRK13684 160 GGKNWEALVEDAAG--VVRNLRRSPDGKYVAVSSRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLARGGQI 237 (334)
T ss_pred CCCCceeCcCCCcc--eEEEEEECCCCeEEEEeCCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEecCCEE
Confidence 34689987543322 222333444444444442333443 3555668998864322 11222 236788988875444
Q ss_pred Ee---cCCc-eEEEeccccccccc-cEEEEEE-CCeEEEEeC
Q 021080 232 KQ---HRDV-RKVVASASEFRRRI-GFAMIGM-GDDIYVIGG 267 (317)
Q Consensus 232 ~y---d~~~-W~~v~~~~~~~~r~-~~~~~~~-~~~lyv~GG 267 (317)
.+ |... |+.+.. |...... .++++.. ++.+++.|.
T Consensus 238 ~~~s~d~G~sW~~~~~-~~~~~~~~l~~v~~~~~~~~~~~G~ 278 (334)
T PRK13684 238 RFNDPDDLESWSKPII-PEITNGYGYLDLAYRTPGEIWAGGG 278 (334)
T ss_pred EEccCCCCCccccccC-CccccccceeeEEEcCCCCEEEEcC
Confidence 44 2223 997643 3111111 2233333 567888775
No 104
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=81.34 E-value=45 Score=31.53 Aligned_cols=56 Identities=13% Similarity=0.053 Sum_probs=29.1
Q ss_pred ceEEEEEeCCCCceEEEeCCCCCEeecCCCCcc-------ccccCCeeEEEeCCEEEEEcCcC
Q 021080 56 NLLCVCAFDPENLWQLYDPLRDLWITLPVLPSK-------IRHLAHFGVVSTAGKLFVLGGGS 111 (317)
Q Consensus 56 ~~l~v~gg~~~~~~~~yd~~~~~W~~~~~~p~~-------~~~r~~~~~~~~~~~iyv~GG~~ 111 (317)
..+|++.|.-..-+-.||.....-++...-+.. ...-.+.+.+..+|.|.|.|-.+
T Consensus 90 ~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t 152 (673)
T KOG4378|consen 90 QSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKT 152 (673)
T ss_pred cceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEeccc
Confidence 347777665556777888875544332221110 00123344555667777766543
No 105
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=81.26 E-value=35 Score=29.45 Aligned_cols=173 Identities=15% Similarity=0.064 Sum_probs=90.7
Q ss_pred CceEEEEEeCCCCceEEEeCC-----CCCEeecCCCCccccccCCeeEEEeCCEEEEEcCcCCCCCCCCCCCCCcccccc
Q 021080 55 ENLLCVCAFDPENLWQLYDPL-----RDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNE 129 (317)
Q Consensus 55 ~~~l~v~gg~~~~~~~~yd~~-----~~~W~~~~~~p~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~ 129 (317)
.+.+|++.+...+.++.|.-. .++....-.+|.+ -.+.+.++++|.+|---..
T Consensus 30 ~~~iy~~~~~~~~~v~ey~~~~~f~~~~~~~~~~~Lp~~---~~GtG~vVYngslYY~~~~------------------- 87 (250)
T PF02191_consen 30 SEKIYVTSGFSGNTVYEYRNYEDFLRNGRSSRTYKLPYP---WQGTGHVVYNGSLYYNKYN------------------- 87 (250)
T ss_pred CCCEEEECccCCCEEEEEcCHhHHhhcCCCceEEEEece---eccCCeEEECCcEEEEecC-------------------
Confidence 557888777554566655432 2233332334432 5566677788887744431
Q ss_pred eeEecccCCCCCCCcCCCceeEEeeCCCCc---eeeCCCCC------ccC--CCceEEEEECCEEEEEec-----CceeE
Q 021080 130 VWSYDPVTRGFTSCRKSISQAEMYDPEKDV---WVPIPDLH------RTH--NSACTGVVIGGKVHVLHK-----GLSTV 193 (317)
Q Consensus 130 ~~~~d~~~~G~~~~~~~~~~~~~yd~~t~~---W~~~~~~p------~~~--r~~~~~~~~~g~lyv~gG-----~~~~v 193 (317)
..++..||..+++ +..++... ... ...--.++..+-|+|+-. ..-.+
T Consensus 88 -----------------s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g~ivv 150 (250)
T PF02191_consen 88 -----------------SRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNGNIVV 150 (250)
T ss_pred -----------------CceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCCcEEE
Confidence 3566677777664 44443211 110 111223455666777754 12345
Q ss_pred EEEeCCCC----cEEeccCCccCCcEEEEcCeEEEEeC------cEEEEecCCc-eEEEeccccccccccEEEEEE---C
Q 021080 194 QVLDHMGL----GWTVEDYGWLQGPMAIVHDSVYLMSH------GLIIKQHRDV-RKVVASASEFRRRIGFAMIGM---G 259 (317)
Q Consensus 194 ~~yd~~~~----~W~~~~~~~~~~~~~~~~~~ly~~g~------~~~~~yd~~~-W~~v~~~~~~~~r~~~~~~~~---~ 259 (317)
-..|+.+- +|..--.......+-.+-|.||++.. .-.+.||+.+ =.+...++-...-...+++.+ +
T Consensus 151 skld~~tL~v~~tw~T~~~k~~~~naFmvCGvLY~~~s~~~~~~~I~yafDt~t~~~~~~~i~f~~~~~~~~~l~YNP~d 230 (250)
T PF02191_consen 151 SKLDPETLSVEQTWNTSYPKRSAGNAFMVCGVLYATDSYDTRDTEIFYAFDTYTGKEEDVSIPFPNPYGNISMLSYNPRD 230 (250)
T ss_pred EeeCcccCceEEEEEeccCchhhcceeeEeeEEEEEEECCCCCcEEEEEEECCCCceeceeeeeccccCceEeeeECCCC
Confidence 55676644 46643222123345567889999874 3457899876 222223331122234556666 4
Q ss_pred CeEEEEe
Q 021080 260 DDIYVIG 266 (317)
Q Consensus 260 ~~lyv~G 266 (317)
.+||+..
T Consensus 231 k~LY~wd 237 (250)
T PF02191_consen 231 KKLYAWD 237 (250)
T ss_pred CeEEEEE
Confidence 6788873
No 106
>PRK04922 tolB translocation protein TolB; Provisional
Probab=80.25 E-value=51 Score=30.79 Aligned_cols=58 Identities=7% Similarity=-0.005 Sum_probs=29.8
Q ss_pred ceeEEeeCCCCceeeCCCCCccCCCceEEEEECC-EEEEEec--CceeEEEEeCCCCcEEecc
Q 021080 148 SQAEMYDPEKDVWVPIPDLHRTHNSACTGVVIGG-KVHVLHK--GLSTVQVLDHMGLGWTVED 207 (317)
Q Consensus 148 ~~~~~yd~~t~~W~~~~~~p~~~r~~~~~~~~~g-~lyv~gG--~~~~v~~yd~~~~~W~~~~ 207 (317)
.+++++|..+++-+.+..-... .... ...-+| +|++... ....++.+|..++..+.+.
T Consensus 272 ~~Iy~~d~~~g~~~~lt~~~~~-~~~~-~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt 332 (433)
T PRK04922 272 PEIYVMDLGSRQLTRLTNHFGI-DTEP-TWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLT 332 (433)
T ss_pred ceEEEEECCCCCeEECccCCCC-ccce-EECCCCCEEEEEECCCCCceEEEEECCCCCeEEee
Confidence 4567777777765555432211 1111 222344 3544432 2346778888777666553
No 107
>PLN00181 protein SPA1-RELATED; Provisional
Probab=80.24 E-value=73 Score=32.51 Aligned_cols=57 Identities=11% Similarity=-0.096 Sum_probs=30.5
Q ss_pred CCEEEEEecCceeEEEEeCCCCc--EEeccCCccCC-cEEEEcCeEEEEeC--cEEEEecCC
Q 021080 180 GGKVHVLHKGLSTVQVLDHMGLG--WTVEDYGWLQG-PMAIVHDSVYLMSH--GLIIKQHRD 236 (317)
Q Consensus 180 ~g~lyv~gG~~~~v~~yd~~~~~--W~~~~~~~~~~-~~~~~~~~ly~~g~--~~~~~yd~~ 236 (317)
++.+++.|+....+..||..+.. ...+....... .+...++..++.++ +.+..+|..
T Consensus 629 ~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~ 690 (793)
T PLN00181 629 SGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLS 690 (793)
T ss_pred CCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEeCCCEEEEEECCCEEEEEeCC
Confidence 57777888767789999987643 22222111111 11222444444443 567777754
No 108
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=79.87 E-value=33 Score=28.39 Aligned_cols=89 Identities=10% Similarity=-0.085 Sum_probs=42.9
Q ss_pred CCEEEEEecCceeEEEEeCCCCcEEecc-CCccCC-cEEEE-cCeEEEEe--CcEEEEecCCceEEEeccccccccccEE
Q 021080 180 GGKVHVLHKGLSTVQVLDHMGLGWTVED-YGWLQG-PMAIV-HDSVYLMS--HGLIIKQHRDVRKVVASASEFRRRIGFA 254 (317)
Q Consensus 180 ~g~lyv~gG~~~~v~~yd~~~~~W~~~~-~~~~~~-~~~~~-~~~ly~~g--~~~~~~yd~~~W~~v~~~~~~~~r~~~~ 254 (317)
+++.+++++....+..||..+.+-...- ...... .++.. ++.+++.+ .+.++.|+..+.+.+..++. ....-..
T Consensus 188 ~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~-~~~~i~~ 266 (289)
T cd00200 188 DGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSG-HTNSVTS 266 (289)
T ss_pred CcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccc-cCCcEEE
Confidence 4445555554677889998765432221 111111 11222 24555555 47788888876444444431 1111122
Q ss_pred EEEE-CCeEEEEeCcc
Q 021080 255 MIGM-GDDIYVIGGVI 269 (317)
Q Consensus 255 ~~~~-~~~lyv~GG~~ 269 (317)
+... ++..++.++.+
T Consensus 267 ~~~~~~~~~l~~~~~d 282 (289)
T cd00200 267 LAWSPDGKRLASGSAD 282 (289)
T ss_pred EEECCCCCEEEEecCC
Confidence 2222 34666666643
No 109
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=79.44 E-value=19 Score=34.50 Aligned_cols=56 Identities=9% Similarity=-0.054 Sum_probs=36.0
Q ss_pred CCceeEEeeCCCCceeeCCCCCccCCCceEEEEECCEEEEEecCceeEEEEeCCCCc
Q 021080 146 SISQAEMYDPEKDVWVPIPDLHRTHNSACTGVVIGGKVHVLHKGLSTVQVLDHMGLG 202 (317)
Q Consensus 146 ~~~~~~~yd~~t~~W~~~~~~p~~~r~~~~~~~~~g~lyv~gG~~~~v~~yd~~~~~ 202 (317)
.-.+++++|.+.++|-.-=..-.+ --.+..+---+.|.++|+....|+.+|+.+.+
T Consensus 153 sg~evYRlNLEqGrfL~P~~~~~~-~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ks 208 (703)
T KOG2321|consen 153 SGSEVYRLNLEQGRFLNPFETDSG-ELNVVSINEEHGLLACGTEDGVVEFWDPRDKS 208 (703)
T ss_pred cCcceEEEEccccccccccccccc-cceeeeecCccceEEecccCceEEEecchhhh
Confidence 347899999999998532111112 11222222234688888878889999998775
No 110
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=79.42 E-value=44 Score=29.53 Aligned_cols=59 Identities=20% Similarity=0.263 Sum_probs=41.6
Q ss_pred EEECCEEEEEec----CceeEEEEeCCCCcE--EeccCCcc----------CCcEEEEcCeEEEEeCcEEEEecCC
Q 021080 177 VVIGGKVHVLHK----GLSTVQVLDHMGLGW--TVEDYGWL----------QGPMAIVHDSVYLMSHGLIIKQHRD 236 (317)
Q Consensus 177 ~~~~g~lyv~gG----~~~~v~~yd~~~~~W--~~~~~~~~----------~~~~~~~~~~ly~~g~~~~~~yd~~ 236 (317)
.++|-.++-+ . ....+++||+.+++| +..+.... ..+++.+.|++|.+-.+.+...||.
T Consensus 156 ~~~D~a~F~i-~~~~~g~~~i~~~Dli~~~~~~e~f~~~~s~Dg~~~~~~~~G~~~s~ynR~faF~rGGi~vgnP~ 230 (339)
T PF09910_consen 156 LVHDYACFGI-NNFHKGVSGIHCLDLISGKWVIESFDVSLSVDGGPVIRPELGAMASAYNRLFAFVRGGIFVGNPY 230 (339)
T ss_pred EeeeeEEEec-cccccCCceEEEEEccCCeEEEEecccccCCCCCceEeeccccEEEEeeeEEEEEeccEEEeCCC
Confidence 3444444433 2 467899999999999 43332111 4577788999999988888888876
No 111
>PRK00178 tolB translocation protein TolB; Provisional
Probab=78.94 E-value=56 Score=30.41 Aligned_cols=94 Identities=6% Similarity=-0.023 Sum_probs=50.7
Q ss_pred ceeEEeeCCCCceeeCCCCCccCCCceEEEEECC-EEEEEec--CceeEEEEeCCCCcEEeccCCccC--CcEEEE-cCe
Q 021080 148 SQAEMYDPEKDVWVPIPDLHRTHNSACTGVVIGG-KVHVLHK--GLSTVQVLDHMGLGWTVEDYGWLQ--GPMAIV-HDS 221 (317)
Q Consensus 148 ~~~~~yd~~t~~W~~~~~~p~~~r~~~~~~~~~g-~lyv~gG--~~~~v~~yd~~~~~W~~~~~~~~~--~~~~~~-~~~ 221 (317)
.+++++|..+++.+.+..-+.. .... ...-+| +|++... ....++.+|..++.++.+...... .+...- ++.
T Consensus 267 ~~Iy~~d~~~~~~~~lt~~~~~-~~~~-~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~ 344 (430)
T PRK00178 267 PEIYVMDLASRQLSRVTNHPAI-DTEP-FWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKT 344 (430)
T ss_pred ceEEEEECCCCCeEEcccCCCC-cCCe-EECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCE
Confidence 5678888888887776543222 1111 122244 5665543 245788899988887766422111 111112 344
Q ss_pred EEEEeC----cEEEEecCCc--eEEEec
Q 021080 222 VYLMSH----GLIIKQHRDV--RKVVAS 243 (317)
Q Consensus 222 ly~~g~----~~~~~yd~~~--W~~v~~ 243 (317)
|++... ..++.+|.++ .+.+..
T Consensus 345 i~~~~~~~~~~~l~~~dl~tg~~~~lt~ 372 (430)
T PRK00178 345 LVMVHRQDGNFHVAAQDLQRGSVRILTD 372 (430)
T ss_pred EEEEEccCCceEEEEEECCCCCEEEccC
Confidence 554432 3577888765 655543
No 112
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=78.76 E-value=36 Score=28.17 Aligned_cols=59 Identities=15% Similarity=-0.089 Sum_probs=30.8
Q ss_pred CEEEEEecCceeEEEEeCCCCcE-EeccCCccCCcEEE-Ec-CeEEEEe--CcEEEEecCCceE
Q 021080 181 GKVHVLHKGLSTVQVLDHMGLGW-TVEDYGWLQGPMAI-VH-DSVYLMS--HGLIIKQHRDVRK 239 (317)
Q Consensus 181 g~lyv~gG~~~~v~~yd~~~~~W-~~~~~~~~~~~~~~-~~-~~ly~~g--~~~~~~yd~~~W~ 239 (317)
+++++.++....+..||+.+.+- ..+........... .. +.+++.+ .+.+..||....+
T Consensus 105 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~ 168 (289)
T cd00200 105 GRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGK 168 (289)
T ss_pred CCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccc
Confidence 46666665567788999875442 22221111111111 22 3444444 4778888876533
No 113
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=78.43 E-value=55 Score=30.06 Aligned_cols=28 Identities=11% Similarity=0.250 Sum_probs=19.8
Q ss_pred CCCEeecCCCCccccccCCeeEEEeCCEEEEEc
Q 021080 76 RDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLG 108 (317)
Q Consensus 76 ~~~W~~~~~~p~~~~~r~~~~~~~~~~~iyv~G 108 (317)
.+.|+.+.... ...--++.++|++|++.
T Consensus 189 ~~~Wt~l~~~~-----~~~~DIi~~kGkfYAvD 216 (373)
T PLN03215 189 GNVLKALKQMG-----YHFSDIIVHKGQTYALD 216 (373)
T ss_pred CCeeeEccCCC-----ceeeEEEEECCEEEEEc
Confidence 47899986422 22345888999999984
No 114
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=77.97 E-value=50 Score=29.34 Aligned_cols=109 Identities=9% Similarity=-0.001 Sum_probs=52.3
Q ss_pred CEEEEEecCceeEEEEeCCCC-cEEe-------ccCCccCCcEEEE--cCeEEEEeC--cEEEEecCC----c---eEEE
Q 021080 181 GKVHVLHKGLSTVQVLDHMGL-GWTV-------EDYGWLQGPMAIV--HDSVYLMSH--GLIIKQHRD----V---RKVV 241 (317)
Q Consensus 181 g~lyv~gG~~~~v~~yd~~~~-~W~~-------~~~~~~~~~~~~~--~~~ly~~g~--~~~~~yd~~----~---W~~v 241 (317)
+.+|+..-..+.+..||+.++ .... ++....+..++.. +..+|+... +.+..|+.+ + .+.+
T Consensus 138 ~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~ 217 (330)
T PRK11028 138 RTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTL 217 (330)
T ss_pred CEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEE
Confidence 356666555678999998763 2221 1111112223322 236777754 677776643 2 4444
Q ss_pred eccccc--cccccEEEEE--ECCeEEEEeCcccCCCCceecccCcceeEeecCCCCCceeeccc
Q 021080 242 ASASEF--RRRIGFAMIG--MGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAERPTWRQVSP 301 (317)
Q Consensus 242 ~~~~~~--~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~~~~W~~~~~ 301 (317)
..+|.. ..+....+.. -+..+|+... ..+.|.+|+++++...++.+..
T Consensus 218 ~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~------------~~~~I~v~~i~~~~~~~~~~~~ 269 (330)
T PRK11028 218 DMMPADFSDTRWAADIHITPDGRHLYACDR------------TASLISVFSVSEDGSVLSFEGH 269 (330)
T ss_pred ecCCCcCCCCccceeEEECCCCCEEEEecC------------CCCeEEEEEEeCCCCeEEEeEE
Confidence 444421 2233322332 2345777521 1235666776544225554443
No 115
>PRK04043 tolB translocation protein TolB; Provisional
Probab=77.93 E-value=61 Score=30.31 Aligned_cols=59 Identities=8% Similarity=0.034 Sum_probs=37.0
Q ss_pred ceeEEeeCCCCceeeCCCCCccCCCceEEEEECCEEEEEec--CceeEEEEeCCCCcEEecc
Q 021080 148 SQAEMYDPEKDVWVPIPDLHRTHNSACTGVVIGGKVHVLHK--GLSTVQVLDHMGLGWTVED 207 (317)
Q Consensus 148 ~~~~~yd~~t~~W~~~~~~p~~~r~~~~~~~~~g~lyv~gG--~~~~v~~yd~~~~~W~~~~ 207 (317)
.+++.+|..+++++.+...+.. -....-...+.+||+... ....++.+|..+++.+.+.
T Consensus 257 ~~Iy~~dl~~g~~~~LT~~~~~-d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt 317 (419)
T PRK04043 257 PDIYLYDTNTKTLTQITNYPGI-DVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVV 317 (419)
T ss_pred cEEEEEECCCCcEEEcccCCCc-cCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCc
Confidence 5788889888888888655432 112221122446777754 3457888888887776553
No 116
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=77.52 E-value=22 Score=28.30 Aligned_cols=32 Identities=19% Similarity=0.193 Sum_probs=25.2
Q ss_pred EEEECCEEEEEecC---c--eeEEEEeCCCCcE-Eecc
Q 021080 176 GVVIGGKVHVLHKG---L--STVQVLDHMGLGW-TVED 207 (317)
Q Consensus 176 ~~~~~g~lyv~gG~---~--~~v~~yd~~~~~W-~~~~ 207 (317)
+|.++|.+|+++.. . ..+.+||+.++++ ..++
T Consensus 1 gV~vnG~~hW~~~~~~~~~~~~IlsFDl~~E~F~~~~~ 38 (164)
T PF07734_consen 1 GVFVNGALHWLAYDENNDEKDFILSFDLSTEKFGRSLP 38 (164)
T ss_pred CEEECCEEEeeEEecCCCCceEEEEEeccccccCCEEC
Confidence 36889999999871 1 1699999999999 5554
No 117
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=76.94 E-value=54 Score=29.16 Aligned_cols=114 Identities=11% Similarity=0.065 Sum_probs=63.7
Q ss_pred ceeEEeeCCCC-----ceeeCCCCCccCCCceEEEEECCEEEEEecCceeEEEEeCCCCc-EEeccCCcc---CCcEEEE
Q 021080 148 SQAEMYDPEKD-----VWVPIPDLHRTHNSACTGVVIGGKVHVLHKGLSTVQVLDHMGLG-WTVEDYGWL---QGPMAIV 218 (317)
Q Consensus 148 ~~~~~yd~~t~-----~W~~~~~~p~~~r~~~~~~~~~g~lyv~gG~~~~v~~yd~~~~~-W~~~~~~~~---~~~~~~~ 218 (317)
-.+.+|+..+. +.+.+...... -.-.+.+.++|+|.+..| +.+..|+...++ +........ ...+.+.
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~-g~V~ai~~~~~~lv~~~g--~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~ 138 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVK-GPVTAICSFNGRLVVAVG--NKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF 138 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEES-S-EEEEEEETTEEEEEET--TEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE
T ss_pred cEEEEEEEEcccccceEEEEEEEEeec-CcceEhhhhCCEEEEeec--CEEEEEEccCcccchhhheecceEEEEEEecc
Confidence 44666776664 55555333333 223456677999777655 567788887777 766654322 2344556
Q ss_pred cCeEEEEeC-c--EEEEecCCc--eEEEeccccccccccEEEEEE-CCeEEEEeC
Q 021080 219 HDSVYLMSH-G--LIIKQHRDV--RKVVASASEFRRRIGFAMIGM-GDDIYVIGG 267 (317)
Q Consensus 219 ~~~ly~~g~-~--~~~~yd~~~--W~~v~~~~~~~~r~~~~~~~~-~~~lyv~GG 267 (317)
++.|++.+. . .++.|+.+. -..++.-. .++.-.++..+ ++. .++++
T Consensus 139 ~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~--~~~~v~~~~~l~d~~-~~i~~ 190 (321)
T PF03178_consen 139 KNYILVGDAMKSVSLLRYDEENNKLILVARDY--QPRWVTAAEFLVDED-TIIVG 190 (321)
T ss_dssp TTEEEEEESSSSEEEEEEETTTE-EEEEEEES--S-BEEEEEEEE-SSS-EEEEE
T ss_pred ccEEEEEEcccCEEEEEEEccCCEEEEEEecC--CCccEEEEEEecCCc-EEEEE
Confidence 787776664 2 455667643 55565544 34555555555 444 44443
No 118
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=76.89 E-value=23 Score=29.59 Aligned_cols=91 Identities=14% Similarity=0.152 Sum_probs=58.9
Q ss_pred EEEEECCEEEEEec--CceeEEEEeCCCCc--EEeccCCcc--CCcEEEEcCeEEEEeC--cEEEEecCCceEEEecccc
Q 021080 175 TGVVIGGKVHVLHK--GLSTVQVLDHMGLG--WTVEDYGWL--QGPMAIVHDSVYLMSH--GLIIKQHRDVRKVVASASE 246 (317)
Q Consensus 175 ~~~~~~g~lyv~gG--~~~~v~~yd~~~~~--W~~~~~~~~--~~~~~~~~~~ly~~g~--~~~~~yd~~~W~~v~~~~~ 246 (317)
.....+|.||...| ..+.+.++|+.+.+ |+.-=..+. .-.....++.+|.+-. +.-+.||..+.++++..+
T Consensus 50 GL~~~~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~- 128 (262)
T COG3823 50 GLEYLDGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS- 128 (262)
T ss_pred ceeeeCCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccc-
Confidence 45677889998888 66789999999665 653322111 3456678899998865 566777777666666555
Q ss_pred ccccccEEEEEECCeEEEEeC
Q 021080 247 FRRRIGFAMIGMGDDIYVIGG 267 (317)
Q Consensus 247 ~~~r~~~~~~~~~~~lyv~GG 267 (317)
....+-+++.-+..|++-.|
T Consensus 129 -y~GeGWgLt~d~~~LimsdG 148 (262)
T COG3823 129 -YEGEGWGLTSDDKNLIMSDG 148 (262)
T ss_pred -cCCcceeeecCCcceEeeCC
Confidence 34444455555555554444
No 119
>PRK00178 tolB translocation protein TolB; Provisional
Probab=76.85 E-value=64 Score=29.99 Aligned_cols=137 Identities=13% Similarity=0.077 Sum_probs=70.0
Q ss_pred ceeEEeeCCCCceeeCCCCCccCCCceEEEEECC-EEEEEec--CceeEEEEeCCCCcEEeccCCcc--CCcEEEEcC-e
Q 021080 148 SQAEMYDPEKDVWVPIPDLHRTHNSACTGVVIGG-KVHVLHK--GLSTVQVLDHMGLGWTVEDYGWL--QGPMAIVHD-S 221 (317)
Q Consensus 148 ~~~~~yd~~t~~W~~~~~~p~~~r~~~~~~~~~g-~lyv~gG--~~~~v~~yd~~~~~W~~~~~~~~--~~~~~~~~~-~ 221 (317)
..++++|..+++-+.+...+.. ... ....-+| +|++... ....++.+|+.++....+..... ..+...-++ .
T Consensus 223 ~~l~~~~l~~g~~~~l~~~~g~-~~~-~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~ 300 (430)
T PRK00178 223 PRIFVQNLDTGRREQITNFEGL-NGA-PAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRT 300 (430)
T ss_pred CEEEEEECCCCCEEEccCCCCC-cCC-eEECCCCCEEEEEEccCCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCE
Confidence 4677788877776666544322 111 1222244 4554332 34579999999988877654322 111222233 4
Q ss_pred EEEEeC----cEEEEecCCc--eEEEeccccccccccEEEEEECCeEEEEeCcccCCCCceecccCcceeEeecCCCCCc
Q 021080 222 VYLMSH----GLIIKQHRDV--RKVVASASEFRRRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAERPT 295 (317)
Q Consensus 222 ly~~g~----~~~~~yd~~~--W~~v~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~~~~ 295 (317)
|+.... ..++.++.+. ++.+.... ........-.-++.|++.....+ ...++++|+.++ +
T Consensus 301 i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~--~~~~~~~~Spdg~~i~~~~~~~~----------~~~l~~~dl~tg--~ 366 (430)
T PRK00178 301 LYFTSDRGGKPQIYKVNVNGGRAERVTFVG--NYNARPRLSADGKTLVMVHRQDG----------NFHVAAQDLQRG--S 366 (430)
T ss_pred EEEEECCCCCceEEEEECCCCCEEEeecCC--CCccceEECCCCCEEEEEEccCC----------ceEEEEEECCCC--C
Confidence 555442 4688887654 66554211 00111112223445555543221 125788888877 6
Q ss_pred eeecc
Q 021080 296 WRQVS 300 (317)
Q Consensus 296 W~~~~ 300 (317)
.+.+.
T Consensus 367 ~~~lt 371 (430)
T PRK00178 367 VRILT 371 (430)
T ss_pred EEEcc
Confidence 66554
No 120
>PRK03629 tolB translocation protein TolB; Provisional
Probab=76.40 E-value=67 Score=30.03 Aligned_cols=57 Identities=11% Similarity=-0.026 Sum_probs=28.8
Q ss_pred ceeEEeeCCCCceeeCCCCCccCCCceEEEEECCE-EEEEec--CceeEEEEeCCCCcEEec
Q 021080 148 SQAEMYDPEKDVWVPIPDLHRTHNSACTGVVIGGK-VHVLHK--GLSTVQVLDHMGLGWTVE 206 (317)
Q Consensus 148 ~~~~~yd~~t~~W~~~~~~p~~~r~~~~~~~~~g~-lyv~gG--~~~~v~~yd~~~~~W~~~ 206 (317)
.+++++|..+++.+.+..-... ... ....-+|+ |++... ....++.+|+.+..-..+
T Consensus 267 ~~I~~~d~~tg~~~~lt~~~~~-~~~-~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~l 326 (429)
T PRK03629 267 LNLYVMDLASGQIRQVTDGRSN-NTE-PTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRI 326 (429)
T ss_pred cEEEEEECCCCCEEEccCCCCC-cCc-eEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEe
Confidence 3577778877777666443222 111 12222444 443332 234677777776654444
No 121
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=76.11 E-value=64 Score=29.65 Aligned_cols=136 Identities=15% Similarity=0.068 Sum_probs=69.7
Q ss_pred ceeEEeeCCCCceeeCCCCCccCCCceEEEEECC-EEEEEec--CceeEEEEeCCCCcEEeccCCcc--CCcEEEEcC-e
Q 021080 148 SQAEMYDPEKDVWVPIPDLHRTHNSACTGVVIGG-KVHVLHK--GLSTVQVLDHMGLGWTVEDYGWL--QGPMAIVHD-S 221 (317)
Q Consensus 148 ~~~~~yd~~t~~W~~~~~~p~~~r~~~~~~~~~g-~lyv~gG--~~~~v~~yd~~~~~W~~~~~~~~--~~~~~~~~~-~ 221 (317)
..++++|..+++-..+...+.. ... ....-+| .|++... ....++.+|+.++....+..... ..+.-.-++ .
T Consensus 214 ~~i~v~d~~~g~~~~~~~~~~~-~~~-~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~ 291 (417)
T TIGR02800 214 PEIYVQDLATGQREKVASFPGM-NGA-PAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKS 291 (417)
T ss_pred cEEEEEECCCCCEEEeecCCCC-ccc-eEECCCCCEEEEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCE
Confidence 4677788877766655444332 222 1222344 4655443 34578999998887776654322 111112244 4
Q ss_pred EEEEeC----cEEEEecCCc--eEEEeccccccccccEE-EEEECCeEEEEeCcccCCCCceecccCcceeEeecCCCCC
Q 021080 222 VYLMSH----GLIIKQHRDV--RKVVASASEFRRRIGFA-MIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAERP 294 (317)
Q Consensus 222 ly~~g~----~~~~~yd~~~--W~~v~~~~~~~~r~~~~-~~~~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~~~ 294 (317)
|++... ..++.++.+. ++.+.... ..... ...-+++.+++...... ...++++|+.++
T Consensus 292 l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~----~~~~~~~~spdg~~i~~~~~~~~---------~~~i~~~d~~~~-- 356 (417)
T TIGR02800 292 IAFTSDRGGSPQIYMMDADGGEVRRLTFRG----GYNASPSWSPDGDLIAFVHREGG---------GFNIAVMDLDGG-- 356 (417)
T ss_pred EEEEECCCCCceEEEEECCCCCEEEeecCC----CCccCeEECCCCCEEEEEEccCC---------ceEEEEEeCCCC--
Confidence 544432 3688887654 66554322 11111 22224554444432221 237888888876
Q ss_pred ceeecc
Q 021080 295 TWRQVS 300 (317)
Q Consensus 295 ~W~~~~ 300 (317)
.++.+.
T Consensus 357 ~~~~l~ 362 (417)
T TIGR02800 357 GERVLT 362 (417)
T ss_pred CeEEcc
Confidence 666554
No 122
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=75.68 E-value=1.2e+02 Score=32.36 Aligned_cols=100 Identities=11% Similarity=0.011 Sum_probs=57.2
Q ss_pred CEEEEEecCceeEEEEeCCCCcEEecc-------C----------------CccCCcEEE-EcCeEEEEeC--cEEEEec
Q 021080 181 GKVHVLHKGLSTVQVLDHMGLGWTVED-------Y----------------GWLQGPMAI-VHDSVYLMSH--GLIIKQH 234 (317)
Q Consensus 181 g~lyv~gG~~~~v~~yd~~~~~W~~~~-------~----------------~~~~~~~~~-~~~~ly~~g~--~~~~~yd 234 (317)
+.|||.....+.|.+||+.++.-..+. . ...+..++. -+|.+|+.+. +.+..+|
T Consensus 752 ~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD 831 (1057)
T PLN02919 752 KELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLD 831 (1057)
T ss_pred CEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEE
Confidence 459999877788999999876532111 0 000222232 3578999975 7899999
Q ss_pred CCc--eEEEecccc----------ccccccEEEEE-ECCeEEEEeCcccCCCCceecccCcceeEeecCCC
Q 021080 235 RDV--RKVVASASE----------FRRRIGFAMIG-MGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAE 292 (317)
Q Consensus 235 ~~~--W~~v~~~~~----------~~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~ 292 (317)
+++ ...+..... ..-..-.+++. -+|+|||.... -+.|.++|++++
T Consensus 832 ~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~------------Nn~Irvid~~~~ 890 (1057)
T PLN02919 832 PATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTN------------NSLIRYLDLNKG 890 (1057)
T ss_pred CCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECC------------CCEEEEEECCCC
Confidence 876 444432110 00011123333 36789887542 235777888776
No 123
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=74.65 E-value=68 Score=29.24 Aligned_cols=60 Identities=8% Similarity=0.083 Sum_probs=41.9
Q ss_pred cCeEEEEe-----------CcEEEEecCCceEEEeccccccccccEEEEEE--CC-eEEEEeCcccCCCCceecccCcce
Q 021080 219 HDSVYLMS-----------HGLIIKQHRDVRKVVASASEFRRRIGFAMIGM--GD-DIYVIGGVIGPDRWNWDIKPMSDV 284 (317)
Q Consensus 219 ~~~ly~~g-----------~~~~~~yd~~~W~~v~~~~~~~~r~~~~~~~~--~~-~lyv~GG~~~~~~~~~~~~~~~~v 284 (317)
++++|+.. ++.++.+|.++++.+..++. .+...+++.- +. .||+.-+. .++|
T Consensus 259 g~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v--G~~~~~iavS~Dgkp~lyvtn~~------------s~~V 324 (352)
T TIGR02658 259 RDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL--GHEIDSINVSQDAKPLLYALSTG------------DKTL 324 (352)
T ss_pred CCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC--CCceeeEEECCCCCeEEEEeCCC------------CCcE
Confidence 67899842 26899999999999998883 4444444433 34 57776552 3468
Q ss_pred eEeecCCC
Q 021080 285 DVLTVGAE 292 (317)
Q Consensus 285 ~~yd~~~~ 292 (317)
.++|..+.
T Consensus 325 sViD~~t~ 332 (352)
T TIGR02658 325 YIFDAETG 332 (352)
T ss_pred EEEECcCC
Confidence 89999887
No 124
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=74.47 E-value=1.2e+02 Score=32.14 Aligned_cols=60 Identities=13% Similarity=0.048 Sum_probs=41.0
Q ss_pred EECCEEEEEecCceeEEEEeCCCCcEEeccCCc---------------cCCcEEE-EcCeEEEEeC--cEEEEecCCc
Q 021080 178 VIGGKVHVLHKGLSTVQVLDHMGLGWTVEDYGW---------------LQGPMAI-VHDSVYLMSH--GLIIKQHRDV 237 (317)
Q Consensus 178 ~~~g~lyv~gG~~~~v~~yd~~~~~W~~~~~~~---------------~~~~~~~-~~~~ly~~g~--~~~~~yd~~~ 237 (317)
.-+|.+||.......|.+||+.++....+.... .+..++. -+|++|+.+. +.+..+|.++
T Consensus 812 d~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~ 889 (1057)
T PLN02919 812 AKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNK 889 (1057)
T ss_pred eCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCC
Confidence 346789999877788999999888766443110 1223333 2678999975 6788888765
No 125
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=74.00 E-value=57 Score=28.08 Aligned_cols=219 Identities=9% Similarity=-0.010 Sum_probs=99.2
Q ss_pred CCceEEEeCCCCCEeecCCCCccccccCCeeEEE--eCCEEEEEcCcCCCCCCCCCCCCCcccccce---------eEec
Q 021080 66 ENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVS--TAGKLFVLGGGSDAVDPLTGDQDGSFATNEV---------WSYD 134 (317)
Q Consensus 66 ~~~~~~yd~~~~~W~~~~~~p~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~---------~~~d 134 (317)
...+..||..++.=..+..... ++....++. .+++-...||.++...-+- ++ ...-... .+..
T Consensus 60 ~qhvRlyD~~S~np~Pv~t~e~---h~kNVtaVgF~~dgrWMyTgseDgt~kIWd-lR--~~~~qR~~~~~spVn~vvlh 133 (311)
T KOG0315|consen 60 NQHVRLYDLNSNNPNPVATFEG---HTKNVTAVGFQCDGRWMYTGSEDGTVKIWD-LR--SLSCQRNYQHNSPVNTVVLH 133 (311)
T ss_pred CCeeEEEEccCCCCCceeEEec---cCCceEEEEEeecCeEEEecCCCceEEEEe-cc--CcccchhccCCCCcceEEec
Confidence 4688899998876443333222 234444443 3678788888654211000 00 0000000 1111
Q ss_pred ccCCCCCCCcCCCceeEEeeCCCCceeeCCCCCccCCCceEE-EEECCEEEEEecCceeEEEEeCCCCcEE-eccC---C
Q 021080 135 PVTRGFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHNSACTG-VVIGGKVHVLHKGLSTVQVLDHMGLGWT-VEDY---G 209 (317)
Q Consensus 135 ~~~~G~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~r~~~~~-~~~~g~lyv~gG~~~~v~~yd~~~~~W~-~~~~---~ 209 (317)
|.. +.--.....-.+.++|..++..... .+|+....-.+. +--+|+..+........+++++.+++-. .+.+ .
T Consensus 134 pnQ-teLis~dqsg~irvWDl~~~~c~~~-liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~ 211 (311)
T KOG0315|consen 134 PNQ-TELISGDQSGNIRVWDLGENSCTHE-LIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKF 211 (311)
T ss_pred CCc-ceEEeecCCCcEEEEEccCCccccc-cCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhhe
Confidence 111 0000112234677888888865432 233331112223 3346666555555567788887765421 1111 1
Q ss_pred cc---CCcEEEE--cCeEEEEeC--cEEEEecCCceEEEeccccccccccEEEEEEC-CeEEEEeCcccCCCCceecccC
Q 021080 210 WL---QGPMAIV--HDSVYLMSH--GLIIKQHRDVRKVVASASEFRRRIGFAMIGMG-DDIYVIGGVIGPDRWNWDIKPM 281 (317)
Q Consensus 210 ~~---~~~~~~~--~~~ly~~g~--~~~~~yd~~~W~~v~~~~~~~~r~~~~~~~~~-~~lyv~GG~~~~~~~~~~~~~~ 281 (317)
.. +...+.+ +++..+..+ ..++.++.+..-++...-....|+--.++.-. +.-+|.|+.+ .
T Consensus 212 ~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd-~---------- 280 (311)
T KOG0315|consen 212 QAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSD-H---------- 280 (311)
T ss_pred ecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCC-C----------
Confidence 11 1111221 444444433 56777777664222221111345555555444 4444445533 2
Q ss_pred cceeEeecCCCCCceeecccCCCCCCc
Q 021080 282 SDVDVLTVGAERPTWRQVSPMTRCRGT 308 (317)
Q Consensus 282 ~~v~~yd~~~~~~~W~~~~~~p~~~~~ 308 (317)
.+..+|++.+ +++..-+..+..
T Consensus 281 -~~rlW~~~~~----k~v~qy~gh~K~ 302 (311)
T KOG0315|consen 281 -TARLWDLSAG----KEVRQYQGHHKA 302 (311)
T ss_pred -ceeecccccC----ceeeecCCcccc
Confidence 4567888887 455444444444
No 126
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures]
Probab=73.83 E-value=53 Score=28.16 Aligned_cols=121 Identities=12% Similarity=0.096 Sum_probs=76.2
Q ss_pred CCceeeCCCCCccCCCceEEEEECCEEEEEecCceeEEEEeCCCCc---EEeccCCcc------------CCcEEEEcCe
Q 021080 157 KDVWVPIPDLHRTHNSACTGVVIGGKVHVLHKGLSTVQVLDHMGLG---WTVEDYGWL------------QGPMAIVHDS 221 (317)
Q Consensus 157 t~~W~~~~~~p~~~r~~~~~~~~~g~lyv~gG~~~~v~~yd~~~~~---W~~~~~~~~------------~~~~~~~~~~ 221 (317)
...|...=.+|.+ ..+..-++++|.+|.-.+....+..||+.++. |..++.+-. ....++-.+.
T Consensus 55 ~~~~~~~~~lp~~-~~gTg~VVynGs~yynk~~t~~ivky~l~~~~~~~~~~lp~a~y~~~~~y~~~g~sdiD~avDE~G 133 (249)
T KOG3545|consen 55 RGRKAEKYRLPYS-WDGTGHVVYNGSLYYNKAGTRNIIKYDLETRTVAGSAALPYAGYHNPSPYYWGGHSDIDLAVDENG 133 (249)
T ss_pred ccCcceEEeCCCC-ccccceEEEcceEEeeccCCcceEEEEeecceeeeeeeccccccCCCcccccCCCccccceecccc
Confidence 3456655567777 66777889999999988777889999999853 666654322 2345555666
Q ss_pred EEEEeC------cE-EEEecCCc------eEEEeccccccccccEEEEEECCeEEEEeCcccCCCCceecccCcce-eEe
Q 021080 222 VYLMSH------GL-IIKQHRDV------RKVVASASEFRRRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDV-DVL 287 (317)
Q Consensus 222 ly~~g~------~~-~~~yd~~~------W~~v~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~v-~~y 287 (317)
|+++=. .. +-+.|+++ |..-- + ....+-+++.+ |-||++-.....+ ..| +.|
T Consensus 134 LWviYat~~~~g~iv~skLdp~tl~~e~tW~T~~--~--k~~~~~aF~iC-GvLY~v~S~~~~~---------~~i~yay 199 (249)
T KOG3545|consen 134 LWVIYATPENAGTIVLSKLDPETLEVERTWNTTL--P--KRSAGNAFMIC-GVLYVVHSYNCTH---------TQISYAY 199 (249)
T ss_pred eeEEecccccCCcEEeeccCHHHhheeeeecccc--C--CCCcCceEEEe-eeeEEEeccccCC---------ceEEEEE
Confidence 766632 22 35566543 75432 2 22344444555 7788886665543 123 689
Q ss_pred ecCCC
Q 021080 288 TVGAE 292 (317)
Q Consensus 288 d~~~~ 292 (317)
|..++
T Consensus 200 dt~~~ 204 (249)
T KOG3545|consen 200 DTTTG 204 (249)
T ss_pred EcCCC
Confidence 99887
No 127
>PRK05137 tolB translocation protein TolB; Provisional
Probab=73.40 E-value=80 Score=29.49 Aligned_cols=88 Identities=11% Similarity=0.039 Sum_probs=42.6
Q ss_pred ceeEEeeCCCCceeeCCCCCccCCCceEEEEECC-EEEEEec--CceeEEEEeCCCCcEEeccCCcc--CCcEEEEcC-e
Q 021080 148 SQAEMYDPEKDVWVPIPDLHRTHNSACTGVVIGG-KVHVLHK--GLSTVQVLDHMGLGWTVEDYGWL--QGPMAIVHD-S 221 (317)
Q Consensus 148 ~~~~~yd~~t~~W~~~~~~p~~~r~~~~~~~~~g-~lyv~gG--~~~~v~~yd~~~~~W~~~~~~~~--~~~~~~~~~-~ 221 (317)
.+++++|..+++-+.+..-+.. ... ....-+| +|++... ....++.+|..+...+.+..... ..+...-+| .
T Consensus 270 ~~Iy~~d~~~~~~~~Lt~~~~~-~~~-~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~ 347 (435)
T PRK05137 270 TDIYTMDLRSGTTTRLTDSPAI-DTS-PSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYSTPVWSPRGDL 347 (435)
T ss_pred ceEEEEECCCCceEEccCCCCc-cCc-eeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcccCeEECCCCCE
Confidence 4566677777666665443221 111 1222244 3444332 23568888888776666543211 112222233 4
Q ss_pred EEEEeC----cEEEEecCCc
Q 021080 222 VYLMSH----GLIIKQHRDV 237 (317)
Q Consensus 222 ly~~g~----~~~~~yd~~~ 237 (317)
|++... ..++.+|.+.
T Consensus 348 ia~~~~~~~~~~i~~~d~~~ 367 (435)
T PRK05137 348 IAFTKQGGGQFSIGVMKPDG 367 (435)
T ss_pred EEEEEcCCCceEEEEEECCC
Confidence 444331 3677777654
No 128
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=72.19 E-value=40 Score=25.46 Aligned_cols=61 Identities=16% Similarity=0.174 Sum_probs=41.0
Q ss_pred CceeEEeeCCCCceeeCCCC--CccCCCceEEEEECCEEEEEec---C---ceeEEEE-eCCCCcEEecc
Q 021080 147 ISQAEMYDPEKDVWVPIPDL--HRTHNSACTGVVIGGKVHVLHK---G---LSTVQVL-DHMGLGWTVED 207 (317)
Q Consensus 147 ~~~~~~yd~~t~~W~~~~~~--p~~~r~~~~~~~~~g~lyv~gG---~---~~~v~~y-d~~~~~W~~~~ 207 (317)
...+.+||.++.+|+.++.. +.........+.++|+|-++.- . .-.++.. |..+++|++..
T Consensus 19 ~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~~k~~Wsk~~ 88 (129)
T PF08268_consen 19 NNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDYEKQEWSKKH 88 (129)
T ss_pred CcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeeccccceEEEEE
Confidence 47788999999999887542 2221455677889999988765 1 1345555 45566787553
No 129
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=72.15 E-value=76 Score=28.69 Aligned_cols=193 Identities=16% Similarity=0.133 Sum_probs=97.1
Q ss_pred cCceEEEEEeCCCCceEEEeCCCCCEeecCCCCccccccCCeeEEEeCCEEEEEcCcCCCCCCCCCCCCCcccccceeEe
Q 021080 54 SENLLCVCAFDPENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSY 133 (317)
Q Consensus 54 ~~~~l~v~gg~~~~~~~~yd~~~~~W~~~~~~p~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~ 133 (317)
.+.++||+--.|..++-.-|...++-..--+.|.. .+ .--.-++..+.++|-. .+..+
T Consensus 105 dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC----~~-iyP~~~~~F~~lC~DG-----------------sl~~v 162 (342)
T PF06433_consen 105 DGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGC----WL-IYPSGNRGFSMLCGDG-----------------SLLTV 162 (342)
T ss_dssp TSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSE----EE-EEEEETTEEEEEETTS-----------------CEEEE
T ss_pred CCcEEEEEccCCCCeEEEEECCCCceeeeecCCCE----EE-EEecCCCceEEEecCC-----------------ceEEE
Confidence 47789999989999999999999988654444431 11 1112234444444321 12222
Q ss_pred cccCCCCCCCcCCCceeEEeeCCCCceeeCCCCCccCCCce-EEEEECCEEEEE--ec-CceeEEEEeCCC-----CcEE
Q 021080 134 DPVTRGFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHNSAC-TGVVIGGKVHVL--HK-GLSTVQVLDHMG-----LGWT 204 (317)
Q Consensus 134 d~~~~G~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~r~~~-~~~~~~g~lyv~--gG-~~~~v~~yd~~~-----~~W~ 204 (317)
....+|.. ....-.+||++.+-.-.-+..... .+. -=+.++|++|-+ +| .......+.+.+ +.|.
T Consensus 163 ~Ld~~Gk~----~~~~t~~F~~~~dp~f~~~~~~~~--~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~Wr 236 (342)
T PF06433_consen 163 TLDADGKE----AQKSTKVFDPDDDPLFEHPAYSRD--GGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWR 236 (342)
T ss_dssp EETSTSSE----EEEEEEESSTTTS-B-S--EEETT--TTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEE
T ss_pred EECCCCCE----eEeeccccCCCCcccccccceECC--CCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcC
Confidence 22222221 123345788777643322222111 111 113567777763 34 112233333322 2354
Q ss_pred eccCCccCCcEEE--EcCeEEEEeC-----------cEEEEecCCceEEEeccccccccccEEE-EEECC--eEEEEeCc
Q 021080 205 VEDYGWLQGPMAI--VHDSVYLMSH-----------GLIIKQHRDVRKVVASASEFRRRIGFAM-IGMGD--DIYVIGGV 268 (317)
Q Consensus 205 ~~~~~~~~~~~~~--~~~~ly~~g~-----------~~~~~yd~~~W~~v~~~~~~~~r~~~~~-~~~~~--~lyv~GG~ 268 (317)
.-. ....+. -.++||++-. .+||.||+++=+.+..++- ....-++ ++.++ .||.+-+.
T Consensus 237 PGG----~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l--~~~~~Si~Vsqd~~P~L~~~~~~ 310 (342)
T PF06433_consen 237 PGG----WQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL--EHPIDSIAVSQDDKPLLYALSAG 310 (342)
T ss_dssp E-S----SS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE--EEEESEEEEESSSS-EEEEEETT
T ss_pred Ccc----eeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC--CCccceEEEccCCCcEEEEEcCC
Confidence 322 122333 2679998842 5899999999777776662 2222122 33344 45554331
Q ss_pred ccCCCCceecccCcceeEeecCCC
Q 021080 269 IGPDRWNWDIKPMSDVDVLTVGAE 292 (317)
Q Consensus 269 ~~~~~~~~~~~~~~~v~~yd~~~~ 292 (317)
..++.+||..++
T Consensus 311 ------------~~~l~v~D~~tG 322 (342)
T PF06433_consen 311 ------------DGTLDVYDAATG 322 (342)
T ss_dssp ------------TTEEEEEETTT-
T ss_pred ------------CCeEEEEeCcCC
Confidence 137899999998
No 130
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=72.09 E-value=76 Score=28.63 Aligned_cols=184 Identities=13% Similarity=0.069 Sum_probs=89.4
Q ss_pred ceEEEeCCCCCEeecCCCCccccccCCeeEEE--eCCEEEEEcCcCCCCCCCCCCCCCcccccceeEecccCCCCCCCcC
Q 021080 68 LWQLYDPLRDLWITLPVLPSKIRHLAHFGVVS--TAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRGFTSCRK 145 (317)
Q Consensus 68 ~~~~yd~~~~~W~~~~~~p~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~G~~~~~~ 145 (317)
.++.||..++++..+...... -....++. -++.||+....... .
T Consensus 16 ~~~~~d~~~g~l~~~~~~~~~---~~Ps~l~~~~~~~~LY~~~e~~~~-------------------------------~ 61 (345)
T PF10282_consen 16 YVFRFDEETGTLTLVQTVAEG---ENPSWLAVSPDGRRLYVVNEGSGD-------------------------------S 61 (345)
T ss_dssp EEEEEETTTTEEEEEEEEEES---SSECCEEE-TTSSEEEEEETTSST-------------------------------T
T ss_pred EEEEEcCCCCCceEeeeecCC---CCCceEEEEeCCCEEEEEEccccC-------------------------------C
Confidence 456677799999876543221 11122333 46678888754200 0
Q ss_pred CCceeEEeeCCCCceeeCCCCCccCCCceEEEEE---CCEEEEEecCceeEEEEeCCCC-cEEecc--------------
Q 021080 146 SISQAEMYDPEKDVWVPIPDLHRTHNSACTGVVI---GGKVHVLHKGLSTVQVLDHMGL-GWTVED-------------- 207 (317)
Q Consensus 146 ~~~~~~~yd~~t~~W~~~~~~p~~~r~~~~~~~~---~g~lyv~gG~~~~v~~yd~~~~-~W~~~~-------------- 207 (317)
..-..+..+..+.+.+.+...+.. ......+.+ +..||+.--....+..|++..+ .-....
T Consensus 62 g~v~~~~i~~~~g~L~~~~~~~~~-g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~r 140 (345)
T PF10282_consen 62 GGVSSYRIDPDTGTLTLLNSVPSG-GSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDR 140 (345)
T ss_dssp TEEEEEEEETTTTEEEEEEEEEES-SSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTT
T ss_pred CCEEEEEECCCcceeEEeeeeccC-CCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccc
Confidence 012233344444677777655533 223333333 4456665434566888877664 222211
Q ss_pred -CCccCCcEEEE--cCeEEEEeC--cEEEEecCCc----eEEEecccccc-ccccEEEEE-ECCeEEEEeCcccCCCCce
Q 021080 208 -YGWLQGPMAIV--HDSVYLMSH--GLIIKQHRDV----RKVVASASEFR-RRIGFAMIG-MGDDIYVIGGVIGPDRWNW 276 (317)
Q Consensus 208 -~~~~~~~~~~~--~~~ly~~g~--~~~~~yd~~~----W~~v~~~~~~~-~r~~~~~~~-~~~~lyv~GG~~~~~~~~~ 276 (317)
..+.+|.+... +..+|+.+. ..++.|+.+. .........+. ..-.|.... -+..+||+.-.
T Consensus 141 q~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~-------- 212 (345)
T PF10282_consen 141 QEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNEL-------- 212 (345)
T ss_dssp TSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETT--------
T ss_pred cccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCC--------
Confidence 00112333333 345777753 7888887543 43333222111 111122222 24578888652
Q ss_pred ecccCcceeEeecC--CCCCceeecc
Q 021080 277 DIKPMSDVDVLTVG--AERPTWRQVS 300 (317)
Q Consensus 277 ~~~~~~~v~~yd~~--~~~~~W~~~~ 300 (317)
.+.|.+|+.. ++ +++.+.
T Consensus 213 ----s~~v~v~~~~~~~g--~~~~~~ 232 (345)
T PF10282_consen 213 ----SNTVSVFDYDPSDG--SLTEIQ 232 (345)
T ss_dssp ----TTEEEEEEEETTTT--EEEEEE
T ss_pred ----CCcEEEEeecccCC--ceeEEE
Confidence 3466667766 55 666553
No 131
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=71.60 E-value=87 Score=29.14 Aligned_cols=96 Identities=4% Similarity=-0.002 Sum_probs=52.9
Q ss_pred ceeEEeeCCCCceeeCCCCCccCCCceEEE-EECCEEEEEec-CceeEEEEeCCCCc-EEeccCCcc-CCcEEEE--cCe
Q 021080 148 SQAEMYDPEKDVWVPIPDLHRTHNSACTGV-VIGGKVHVLHK-GLSTVQVLDHMGLG-WTVEDYGWL-QGPMAIV--HDS 221 (317)
Q Consensus 148 ~~~~~yd~~t~~W~~~~~~p~~~r~~~~~~-~~~g~lyv~gG-~~~~v~~yd~~~~~-W~~~~~~~~-~~~~~~~--~~~ 221 (317)
..+.+||.++++ .+..+|.- -..-.++ +-+|-.|++-+ ...+|..+|+++.. ...+...-. ......+ -|.
T Consensus 369 ~~vkiwdlks~~--~~a~Fpgh-t~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt 445 (506)
T KOG0289|consen 369 GVVKIWDLKSQT--NVAKFPGH-TGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGT 445 (506)
T ss_pred ceEEEEEcCCcc--ccccCCCC-CCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCC
Confidence 456678888877 55666543 2222333 33344444444 44559999998765 222221100 1112222 356
Q ss_pred EEEEeCcEEEEecCC----ceEEEecccc
Q 021080 222 VYLMSHGLIIKQHRD----VRKVVASASE 246 (317)
Q Consensus 222 ly~~g~~~~~~yd~~----~W~~v~~~~~ 246 (317)
...++|+.++.|-.+ +|+++...+.
T Consensus 446 ~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~ 474 (506)
T KOG0289|consen 446 YLGIAGSDLQVYICKKKTKSWTEIKELAD 474 (506)
T ss_pred eEEeecceeEEEEEecccccceeeehhhh
Confidence 666778777766543 3999998874
No 132
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=71.47 E-value=30 Score=31.18 Aligned_cols=38 Identities=18% Similarity=0.249 Sum_probs=22.5
Q ss_pred CCeEEEEeCcccCCCCceecccCcceeEeecCCCCCceeecccCC
Q 021080 259 GDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAERPTWRQVSPMT 303 (317)
Q Consensus 259 ~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~~~~W~~~~~~p 303 (317)
.++|||+- .... ...|.....+||+||+++. +++..+|
T Consensus 249 ~~rlyvLM-h~g~--~gsHKdpgteVWv~D~~t~----krv~Ri~ 286 (342)
T PF06433_consen 249 SGRLYVLM-HQGG--EGSHKDPGTEVWVYDLKTH----KRVARIP 286 (342)
T ss_dssp TTEEEEEE-EE----TT-TTS-EEEEEEEETTTT----EEEEEEE
T ss_pred cCeEEEEe-cCCC--CCCccCCceEEEEEECCCC----eEEEEEe
Confidence 67999874 2111 1112246779999999998 5555443
No 133
>PTZ00421 coronin; Provisional
Probab=71.41 E-value=99 Score=29.67 Aligned_cols=24 Identities=8% Similarity=0.113 Sum_probs=18.8
Q ss_pred ECCEEEEEecCceeEEEEeCCCCc
Q 021080 179 IGGKVHVLHKGLSTVQVLDHMGLG 202 (317)
Q Consensus 179 ~~g~lyv~gG~~~~v~~yd~~~~~ 202 (317)
.+|.+.+.|+....+..||+.+++
T Consensus 178 pdG~lLatgs~Dg~IrIwD~rsg~ 201 (493)
T PTZ00421 178 LDGSLLCTTSKDKKLNIIDPRDGT 201 (493)
T ss_pred CCCCEEEEecCCCEEEEEECCCCc
Confidence 367777887766789999998765
No 134
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=70.51 E-value=16 Score=31.89 Aligned_cols=63 Identities=16% Similarity=0.201 Sum_probs=41.0
Q ss_pred ceeEEeeCCCCceeeCCCCC-ccCCCceEEEEECCEEEEEecCceeEEEEeCCCCcEEeccCCcc
Q 021080 148 SQAEMYDPEKDVWVPIPDLH-RTHNSACTGVVIGGKVHVLHKGLSTVQVLDHMGLGWTVEDYGWL 211 (317)
Q Consensus 148 ~~~~~yd~~t~~W~~~~~~p-~~~r~~~~~~~~~g~lyv~gG~~~~v~~yd~~~~~W~~~~~~~~ 211 (317)
-.+++|||.+.+|.+-+-.. .+ |-...-|--.++++..--..+.+..||+++.++++++...+
T Consensus 254 g~l~rfdPs~~sW~eypLPgs~a-rpys~rVD~~grVW~sea~agai~rfdpeta~ftv~p~pr~ 317 (353)
T COG4257 254 GSLHRFDPSVTSWIEYPLPGSKA-RPYSMRVDRHGRVWLSEADAGAIGRFDPETARFTVLPIPRP 317 (353)
T ss_pred ceeeEeCcccccceeeeCCCCCC-CcceeeeccCCcEEeeccccCceeecCcccceEEEecCCCC
Confidence 47889999999999763221 12 22222222234555533356789999999999999975544
No 135
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=69.88 E-value=1.2e+02 Score=30.05 Aligned_cols=109 Identities=17% Similarity=0.255 Sum_probs=62.0
Q ss_pred CceEEEEEeCCCCceEEEeCCCCCEeecCCCCccccccCC-eeEE-EeCCEEEEEcCcCCCCCCCCCCCCCcccccceeE
Q 021080 55 ENLLCVCAFDPENLWQLYDPLRDLWITLPVLPSKIRHLAH-FGVV-STAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWS 132 (317)
Q Consensus 55 ~~~l~v~gg~~~~~~~~yd~~~~~W~~~~~~p~~~~~r~~-~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~ 132 (317)
+..+.+..| +.++.||+..+.-.. ++-.. ... ++++ +.+|+.|..||.+ ..|-.
T Consensus 24 GsqL~lAAg---~rlliyD~ndG~llq--tLKgH---KDtVycVAys~dGkrFASG~aD----------------K~VI~ 79 (1081)
T KOG1538|consen 24 GTQLILAAG---SRLLVYDTSDGTLLQ--PLKGH---KDTVYCVAYAKDGKRFASGSAD----------------KSVII 79 (1081)
T ss_pred CceEEEecC---CEEEEEeCCCccccc--ccccc---cceEEEEEEccCCceeccCCCc----------------eeEEE
Confidence 556666655 689999999876432 22211 111 2333 4478899988854 45666
Q ss_pred ecccCCCCC-CCcCCCceeEEeeCCCCc-----------eeeCCCC-----CccCCCceEEEEECCEEEEEec
Q 021080 133 YDPVTRGFT-SCRKSISQAEMYDPEKDV-----------WVPIPDL-----HRTHNSACTGVVIGGKVHVLHK 188 (317)
Q Consensus 133 ~d~~~~G~~-~~~~~~~~~~~yd~~t~~-----------W~~~~~~-----p~~~r~~~~~~~~~g~lyv~gG 188 (317)
++++..|.- .+....-++..|||-+.. |+.-..- ... |-.+.+=..||.++++|-
T Consensus 80 W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~-R~~~CsWtnDGqylalG~ 151 (1081)
T KOG1538|consen 80 WTSKLEGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSS-RIICCSWTNDGQYLALGM 151 (1081)
T ss_pred ecccccceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhhe-eEEEeeecCCCcEEEEec
Confidence 777666541 123345677888887764 5433111 112 333333355888888885
No 136
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=68.59 E-value=98 Score=28.54 Aligned_cols=135 Identities=10% Similarity=0.043 Sum_probs=77.7
Q ss_pred ceeEEeeCCCC-----ceeeCCCCCccCCCceEEEEECCEEEEEec---CceeEEEEeCCCCc---EE-eccCCcc---C
Q 021080 148 SQAEMYDPEKD-----VWVPIPDLHRTHNSACTGVVIGGKVHVLHK---GLSTVQVLDHMGLG---WT-VEDYGWL---Q 212 (317)
Q Consensus 148 ~~~~~yd~~t~-----~W~~~~~~p~~~r~~~~~~~~~g~lyv~gG---~~~~v~~yd~~~~~---W~-~~~~~~~---~ 212 (317)
++++..|.... +|..+.+--.. ....+...++.+|+... ....+..+++.+.. |. .+.+... -
T Consensus 252 s~v~~~d~~~~~~~~~~~~~l~~~~~~--~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l 329 (414)
T PF02897_consen 252 SEVYLLDLDDGGSPDAKPKLLSPREDG--VEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSL 329 (414)
T ss_dssp EEEEEEECCCTTTSS-SEEEEEESSSS---EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEE
T ss_pred CeEEEEeccccCCCcCCcEEEeCCCCc--eEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeE
Confidence 67888888765 77777442222 12234456899999886 45688999987765 65 4433222 2
Q ss_pred CcEEEEcCeEEEEeC----cEEEEecCC-ceEEEe-ccccccccccEEEEE---ECCeE-EEEeCcccCCCCceecccCc
Q 021080 213 GPMAIVHDSVYLMSH----GLIIKQHRD-VRKVVA-SASEFRRRIGFAMIG---MGDDI-YVIGGVIGPDRWNWDIKPMS 282 (317)
Q Consensus 213 ~~~~~~~~~ly~~g~----~~~~~yd~~-~W~~v~-~~~~~~~r~~~~~~~---~~~~l-yv~GG~~~~~~~~~~~~~~~ 282 (317)
..+...++.|++..- ..+..++.. .|.... .+|. ........ .++.+ |.+.+...+ .
T Consensus 330 ~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~---~g~v~~~~~~~~~~~~~~~~ss~~~P----------~ 396 (414)
T PF02897_consen 330 EDVSLFKDYLVLSYRENGSSRLRVYDLDDGKESREIPLPE---AGSVSGVSGDFDSDELRFSYSSFTTP----------P 396 (414)
T ss_dssp EEEEEETTEEEEEEEETTEEEEEEEETT-TEEEEEEESSS---SSEEEEEES-TT-SEEEEEEEETTEE----------E
T ss_pred EEEEEECCEEEEEEEECCccEEEEEECCCCcEEeeecCCc---ceEEeccCCCCCCCEEEEEEeCCCCC----------C
Confidence 233445777776642 688999998 655443 3332 11111111 13444 344565544 3
Q ss_pred ceeEeecCCCCCceeec
Q 021080 283 DVDVLTVGAERPTWRQV 299 (317)
Q Consensus 283 ~v~~yd~~~~~~~W~~~ 299 (317)
.++.||+.++ +-+.+
T Consensus 397 ~~y~~d~~t~--~~~~~ 411 (414)
T PF02897_consen 397 TVYRYDLATG--ELTLL 411 (414)
T ss_dssp EEEEEETTTT--CEEEE
T ss_pred EEEEEECCCC--CEEEE
Confidence 8999999999 66554
No 137
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=68.09 E-value=15 Score=21.32 Aligned_cols=23 Identities=17% Similarity=0.218 Sum_probs=14.6
Q ss_pred cEEEEcCeEEEEeC-cEEEEecCC
Q 021080 214 PMAIVHDSVYLMSH-GLIIKQHRD 236 (317)
Q Consensus 214 ~~~~~~~~ly~~g~-~~~~~yd~~ 236 (317)
+.++.++.+|+.+. +.++++|.+
T Consensus 16 ~~~v~~g~vyv~~~dg~l~ald~~ 39 (40)
T PF13570_consen 16 SPAVAGGRVYVGTGDGNLYALDAA 39 (40)
T ss_dssp --EECTSEEEEE-TTSEEEEEETT
T ss_pred CCEEECCEEEEEcCCCEEEEEeCC
Confidence 44666778887775 777777765
No 138
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=66.05 E-value=93 Score=27.35 Aligned_cols=108 Identities=6% Similarity=-0.021 Sum_probs=64.8
Q ss_pred EEECCEEEEEecCceeEEEEeCCCCcEEeccCCcc-----CCcEEEEcCeEEEEe--CcEEEEecCCc--eEEEeccccc
Q 021080 177 VVIGGKVHVLHKGLSTVQVLDHMGLGWTVEDYGWL-----QGPMAIVHDSVYLMS--HGLIIKQHRDV--RKVVASASEF 247 (317)
Q Consensus 177 ~~~~g~lyv~gG~~~~v~~yd~~~~~W~~~~~~~~-----~~~~~~~~~~ly~~g--~~~~~~yd~~~--W~~v~~~~~~ 247 (317)
+.-||.+|...=..+.+-..|+.+..=++++.... ..--+.--+++++.. ...+..||+.. |++-. +|..
T Consensus 196 atpdGsvwyaslagnaiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~eyp-LPgs 274 (353)
T COG4257 196 ATPDGSVWYASLAGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWIEYP-LPGS 274 (353)
T ss_pred ECCCCcEEEEeccccceEEcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCcccccceeee-CCCC
Confidence 34578888774334567777887775555543221 000111234566654 37899999876 98763 4443
Q ss_pred cccccEEEEEECCeEEEEeCcccCCCCceecccCcceeEeecCCCCCceeec
Q 021080 248 RRRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAERPTWRQV 299 (317)
Q Consensus 248 ~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~~~~W~~~ 299 (317)
..|....-|--.|++++-- -..+.+..||+++. +.+.+
T Consensus 275 ~arpys~rVD~~grVW~se------------a~agai~rfdpeta--~ftv~ 312 (353)
T COG4257 275 KARPYSMRVDRHGRVWLSE------------ADAGAIGRFDPETA--RFTVL 312 (353)
T ss_pred CCCcceeeeccCCcEEeec------------cccCceeecCcccc--eEEEe
Confidence 4555444444568888732 13457889999998 77665
No 139
>smart00284 OLF Olfactomedin-like domains.
Probab=65.67 E-value=90 Score=27.02 Aligned_cols=172 Identities=13% Similarity=0.083 Sum_probs=90.9
Q ss_pred CceEEEEEeCC--CCceEEEeC----CCCCEeecCCCCccccccCCeeEEEeCCEEEEEcCcCCCCCCCCCCCCCccccc
Q 021080 55 ENLLCVCAFDP--ENLWQLYDP----LRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATN 128 (317)
Q Consensus 55 ~~~l~v~gg~~--~~~~~~yd~----~~~~W~~~~~~p~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~ 128 (317)
++.+|++-+.+ .+.+..|.. ..+++...-.+|.. -.+...++++|.+|.--..
T Consensus 34 ~~~~wv~~~~~~~~~~v~ey~~~~~f~~~~~~~~~~Lp~~---~~GtG~VVYngslYY~~~~------------------ 92 (255)
T smart00284 34 KSLYWYMPLNTRVLRSVREYSSMSDFQMGKNPTDHPLPHA---GQGTGVVVYNGSLYFNKFN------------------ 92 (255)
T ss_pred CceEEEEccccCCCcEEEEecCHHHHhccCCceEEECCCc---cccccEEEECceEEEEecC------------------
Confidence 35788775431 344555543 33444333345543 5667788999999864432
Q ss_pred ceeEecccCCCCCCCcCCCceeEEeeCCCCceeeCCCCCccC-----------CCceEEEEECCEEEEEec-----Ccee
Q 021080 129 EVWSYDPVTRGFTSCRKSISQAEMYDPEKDVWVPIPDLHRTH-----------NSACTGVVIGGKVHVLHK-----GLST 192 (317)
Q Consensus 129 ~~~~~d~~~~G~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~-----------r~~~~~~~~~g~lyv~gG-----~~~~ 192 (317)
...+..||..+++=.....+|.+. -..--.++..+-|+|+=. ..-.
T Consensus 93 ------------------s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~g~iv 154 (255)
T smart00284 93 ------------------SHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNAGKIV 154 (255)
T ss_pred ------------------CccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCCCCCEE
Confidence 245667777776543333333210 111223455566777632 1223
Q ss_pred EEEEeCCCC----cEEeccCCccCCcEEEEcCeEEEEeC------cEEEEecCCc-eEEEeccccccccccEEEEEE---
Q 021080 193 VQVLDHMGL----GWTVEDYGWLQGPMAIVHDSVYLMSH------GLIIKQHRDV-RKVVASASEFRRRIGFAMIGM--- 258 (317)
Q Consensus 193 v~~yd~~~~----~W~~~~~~~~~~~~~~~~~~ly~~g~------~~~~~yd~~~-W~~v~~~~~~~~r~~~~~~~~--- 258 (317)
+-..|+.+- .|..--+......+..+-|.||++.. ...+.||+.+ =.+-..+|-.......+++.+
T Consensus 155 vSkLnp~tL~ve~tW~T~~~k~sa~naFmvCGvLY~~~s~~~~~~~I~yayDt~t~~~~~~~i~f~n~y~~~s~l~YNP~ 234 (255)
T smart00284 155 ISKLNPATLTIENTWITTYNKRSASNAFMICGILYVTRSLGSKGEKVFYAYDTNTGKEGHLDIPFENMYEYISMLDYNPN 234 (255)
T ss_pred EEeeCcccceEEEEEEcCCCcccccccEEEeeEEEEEccCCCCCcEEEEEEECCCCccceeeeeeccccccceeceeCCC
Confidence 445777654 47653222223455567889999963 3467899876 122222331122334455655
Q ss_pred CCeEEEE
Q 021080 259 GDDIYVI 265 (317)
Q Consensus 259 ~~~lyv~ 265 (317)
+.+||+.
T Consensus 235 d~~LY~w 241 (255)
T smart00284 235 DRKLYAW 241 (255)
T ss_pred CCeEEEE
Confidence 4678886
No 140
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=65.38 E-value=1.2e+02 Score=28.48 Aligned_cols=107 Identities=11% Similarity=0.067 Sum_probs=57.9
Q ss_pred EECCEEEEEecCceeEEEEeCCCC-cEEec-cCCccCCcEEEE-c-CeEEEEeCcEEEEecCCc-eEEEecccccccccc
Q 021080 178 VIGGKVHVLHKGLSTVQVLDHMGL-GWTVE-DYGWLQGPMAIV-H-DSVYLMSHGLIIKQHRDV-RKVVASASEFRRRIG 252 (317)
Q Consensus 178 ~~~g~lyv~gG~~~~v~~yd~~~~-~W~~~-~~~~~~~~~~~~-~-~~ly~~g~~~~~~yd~~~-W~~v~~~~~~~~r~~ 252 (317)
..++.|.+.||+...|--||+.+. .|..- ...-+--.++.+ . ..|-..||+.+..+|..+ =+.+..+.. ....-
T Consensus 163 ~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~~~~~-H~KtV 241 (487)
T KOG0310|consen 163 PANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLLTSMFN-HNKTV 241 (487)
T ss_pred cCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCceehhhhhc-ccceE
Confidence 446778999998888999999887 45422 111111122222 2 345556778888888765 555544331 00110
Q ss_pred EEEEEE-CCeEEEEeCcccCCCCceecccCcceeEeecCCCCCceeeccc
Q 021080 253 FAMIGM-GDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAERPTWRQVSP 301 (317)
Q Consensus 253 ~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~~~~W~~~~~ 301 (317)
..++.. ++.-++-||.+. .|.+||.. .|+.+-.
T Consensus 242 TcL~l~s~~~rLlS~sLD~------------~VKVfd~t----~~Kvv~s 275 (487)
T KOG0310|consen 242 TCLRLASDSTRLLSGSLDR------------HVKVFDTT----NYKVVHS 275 (487)
T ss_pred EEEEeecCCceEeeccccc------------ceEEEEcc----ceEEEEe
Confidence 111112 335555666543 46788843 5666643
No 141
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=65.01 E-value=1.1e+02 Score=27.65 Aligned_cols=136 Identities=20% Similarity=0.159 Sum_probs=67.3
Q ss_pred ceeEEeeCCCCc--eeeCC--CCCccCCCce-EEEEE--CCEEEEEecCceeEEEEeCC--CCcEEecc---CCcc----
Q 021080 148 SQAEMYDPEKDV--WVPIP--DLHRTHNSAC-TGVVI--GGKVHVLHKGLSTVQVLDHM--GLGWTVED---YGWL---- 211 (317)
Q Consensus 148 ~~~~~yd~~t~~--W~~~~--~~p~~~r~~~-~~~~~--~g~lyv~gG~~~~v~~yd~~--~~~W~~~~---~~~~---- 211 (317)
..+.+|+...++ ..... .++.. .++ ..++. +..+|++....+.|.+|+.. ++.++.+. ..+.
T Consensus 166 D~v~~~~~~~~~~~l~~~~~~~~~~G--~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~ 243 (345)
T PF10282_consen 166 DRVYVYDIDDDTGKLTPVDSIKVPPG--SGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTG 243 (345)
T ss_dssp TEEEEEEE-TTS-TEEEEEEEECSTT--SSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCS
T ss_pred CEEEEEEEeCCCceEEEeeccccccC--CCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccc
Confidence 567777776655 44322 22222 222 23333 34799998866666666555 66665543 2211
Q ss_pred C-Cc--EEEE--cCeEEEEeC--cEEEEecC--Cc--eEEEeccccc--cccccEEEEEECCeEEEEeCcccCCCCceec
Q 021080 212 Q-GP--MAIV--HDSVYLMSH--GLIIKQHR--DV--RKVVASASEF--RRRIGFAMIGMGDDIYVIGGVIGPDRWNWDI 278 (317)
Q Consensus 212 ~-~~--~~~~--~~~ly~~g~--~~~~~yd~--~~--W~~v~~~~~~--~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~ 278 (317)
. .+ ++.. +..||+... +.+..|+. +. -+.+...+.. .+|. +++-.-++.||+.+..
T Consensus 244 ~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~-~~~s~~g~~l~Va~~~---------- 312 (345)
T PF10282_consen 244 ENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRH-FAFSPDGRYLYVANQD---------- 312 (345)
T ss_dssp SSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEE-EEE-TTSSEEEEEETT----------
T ss_pred cCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccE-EEEeCCCCEEEEEecC----------
Confidence 1 11 1222 345777653 67777765 32 5555555421 1222 2222234556665432
Q ss_pred ccCcceeEeec--CCCCCceeecc
Q 021080 279 KPMSDVDVLTV--GAERPTWRQVS 300 (317)
Q Consensus 279 ~~~~~v~~yd~--~~~~~~W~~~~ 300 (317)
.+.|.+|+. +++ .++.+.
T Consensus 313 --s~~v~vf~~d~~tG--~l~~~~ 332 (345)
T PF10282_consen 313 --SNTVSVFDIDPDTG--KLTPVG 332 (345)
T ss_dssp --TTEEEEEEEETTTT--EEEEEE
T ss_pred --CCeEEEEEEeCCCC--cEEEec
Confidence 235666654 566 888775
No 142
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=64.39 E-value=1.2e+02 Score=28.19 Aligned_cols=117 Identities=10% Similarity=0.080 Sum_probs=64.7
Q ss_pred CceEEEEE-CCEEEEEecCceeEEEEeCCCCcEEeccCCcc-CCcE---EEEcCeEEEEeC---cEEEEecCCceEEEec
Q 021080 172 SACTGVVI-GGKVHVLHKGLSTVQVLDHMGLGWTVEDYGWL-QGPM---AIVHDSVYLMSH---GLIIKQHRDVRKVVAS 243 (317)
Q Consensus 172 ~~~~~~~~-~g~lyv~gG~~~~v~~yd~~~~~W~~~~~~~~-~~~~---~~~~~~ly~~g~---~~~~~yd~~~W~~v~~ 243 (317)
..++++++ ||-|+..|-....+-.||+.+.. .+..++. ..++ ...+|..|++-. +.++.+|..+=+.+..
T Consensus 349 ~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~--~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt 426 (506)
T KOG0289|consen 349 EYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQT--NVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKT 426 (506)
T ss_pred eeEEeeEcCCceEEeccCCCceEEEEEcCCcc--ccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccce
Confidence 34566676 44555554456678889998877 4555544 1222 223566666533 5588888766222222
Q ss_pred cccccccccEEEEEE--CCeEEEEeCcccCCCCceecccCcceeEeecCCCCCceeecccCCCC
Q 021080 244 ASEFRRRIGFAMIGM--GDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAERPTWRQVSPMTRC 305 (317)
Q Consensus 244 ~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~~~~W~~~~~~p~~ 305 (317)
.+- ..........+ .|+.++++|.+ -.|+.|+-.++ +|+.+..++..
T Consensus 427 ~~l-~~~~~v~s~~fD~SGt~L~~~g~~------------l~Vy~~~k~~k--~W~~~~~~~~~ 475 (506)
T KOG0289|consen 427 IQL-DEKKEVNSLSFDQSGTYLGIAGSD------------LQVYICKKKTK--SWTEIKELADH 475 (506)
T ss_pred eec-cccccceeEEEcCCCCeEEeecce------------eEEEEEecccc--cceeeehhhhc
Confidence 221 01111222233 46777777521 25667777777 99998765443
No 143
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=64.38 E-value=1.1e+02 Score=27.75 Aligned_cols=54 Identities=7% Similarity=-0.020 Sum_probs=29.8
Q ss_pred CceeEEEEeCCCCcEEec-cCCc-cCCcEEEEcCeEEEEeC--cEEEEecCCc---eEEEe
Q 021080 189 GLSTVQVLDHMGLGWTVE-DYGW-LQGPMAIVHDSVYLMSH--GLIIKQHRDV---RKVVA 242 (317)
Q Consensus 189 ~~~~v~~yd~~~~~W~~~-~~~~-~~~~~~~~~~~ly~~g~--~~~~~yd~~~---W~~v~ 242 (317)
..+++..++.-.+..-.- .... .-..+++..+.+|+.|+ +.++.+|-+. .+..+
T Consensus 338 s~dnik~w~~p~g~f~~nlsgh~~iintl~~nsD~v~~~G~dng~~~fwdwksg~nyQ~~~ 398 (460)
T KOG0285|consen 338 SPDNIKQWKLPEGEFLQNLSGHNAIINTLSVNSDGVLVSGGDNGSIMFWDWKSGHNYQRGQ 398 (460)
T ss_pred CCccceeccCCccchhhccccccceeeeeeeccCceEEEcCCceEEEEEecCcCccccccc
Confidence 356666666655443211 1000 02345556677888887 5677777665 66664
No 144
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=62.80 E-value=1.1e+02 Score=27.17 Aligned_cols=105 Identities=10% Similarity=0.105 Sum_probs=46.9
Q ss_pred CCceeeCC-CCCccCCCce-EEEEECCEEEEEecCceeEEEEeCCCCcEEeccCCcc-C-CcEEE-EcCeEEEEeC--cE
Q 021080 157 KDVWVPIP-DLHRTHNSAC-TGVVIGGKVHVLHKGLSTVQVLDHMGLGWTVEDYGWL-Q-GPMAI-VHDSVYLMSH--GL 229 (317)
Q Consensus 157 t~~W~~~~-~~p~~~r~~~-~~~~~~g~lyv~gG~~~~v~~yd~~~~~W~~~~~~~~-~-~~~~~-~~~~ly~~g~--~~ 229 (317)
-.+|++++ +.+.+ .... ..+.-++.+.+++. ...++.=.-.-.+|+.+..... . ..+.. -++++.+++. +.
T Consensus 90 G~tW~~v~l~~~lp-gs~~~i~~l~~~~~~l~~~-~G~iy~T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~ 167 (302)
T PF14870_consen 90 GKTWERVPLSSKLP-GSPFGITALGDGSAELAGD-RGAIYRTTDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRGNF 167 (302)
T ss_dssp TSS-EE----TT-S-S-EEEEEEEETTEEEEEET-T--EEEESSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTSSE
T ss_pred CCCcEEeecCCCCC-CCeeEEEEcCCCcEEEEcC-CCcEEEeCCCCCCeeEcccCCcceeEeEEECCCCcEEEEECcccE
Confidence 46899985 22333 2222 23445667777654 4556666666778998764432 1 11122 2456665664 44
Q ss_pred EEEecCCc--eEEEeccccccccccEEEEEECCeEEEE
Q 021080 230 IIKQHRDV--RKVVASASEFRRRIGFAMIGMGDDIYVI 265 (317)
Q Consensus 230 ~~~yd~~~--W~~v~~~~~~~~r~~~~~~~~~~~lyv~ 265 (317)
+...|+.+ |+...... ..|.......-++.|+++
T Consensus 168 ~~s~~~G~~~w~~~~r~~--~~riq~~gf~~~~~lw~~ 203 (302)
T PF14870_consen 168 YSSWDPGQTTWQPHNRNS--SRRIQSMGFSPDGNLWML 203 (302)
T ss_dssp EEEE-TT-SS-EEEE--S--SS-EEEEEE-TTS-EEEE
T ss_pred EEEecCCCccceEEccCc--cceehhceecCCCCEEEE
Confidence 55678776 99887654 344443333335566665
No 145
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=62.50 E-value=94 Score=26.15 Aligned_cols=110 Identities=8% Similarity=-0.113 Sum_probs=62.7
Q ss_pred eeEEEeCCEEEEEcCcCCCCCCCCCCCCCcccccceeEecccCCCCCCCcCCCceeEEeeCCCCceeeCCCCCccCCCce
Q 021080 95 FGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRGFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHNSAC 174 (317)
Q Consensus 95 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~G~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~r~~~ 174 (317)
......+++||...|..+ .+.+.++|..+.+=..-.+++.+..++-
T Consensus 49 QGL~~~~g~i~esTG~yg----------------------------------~S~ir~~~L~~gq~~~s~~l~~~~~FgE 94 (262)
T COG3823 49 QGLEYLDGHILESTGLYG----------------------------------FSKIRVSDLTTGQEIFSEKLAPDTVFGE 94 (262)
T ss_pred cceeeeCCEEEEeccccc----------------------------------cceeEEEeccCceEEEEeecCCcccccc
Confidence 456677889998888643 2667788888665322223332314555
Q ss_pred EEEEECCEEEEEecCceeEEEEeCCCCcEEeccCCcc---CCcEEEEcCeEEEEeCc-EEEEecCCceEE
Q 021080 175 TGVVIGGKVHVLHKGLSTVQVLDHMGLGWTVEDYGWL---QGPMAIVHDSVYLMSHG-LIIKQHRDVRKV 240 (317)
Q Consensus 175 ~~~~~~g~lyv~gG~~~~v~~yd~~~~~W~~~~~~~~---~~~~~~~~~~ly~~g~~-~~~~yd~~~W~~ 240 (317)
..+..++.+|.+.=.....+.||..+ ...+..... .-..+.-+..|.+-+|+ .+.+.||++..+
T Consensus 95 Git~~gd~~y~LTw~egvaf~~d~~t--~~~lg~~~y~GeGWgLt~d~~~LimsdGsatL~frdP~tfa~ 162 (262)
T COG3823 95 GITKLGDYFYQLTWKEGVAFKYDADT--LEELGRFSYEGEGWGLTSDDKNLIMSDGSATLQFRDPKTFAE 162 (262)
T ss_pred ceeeccceEEEEEeccceeEEEChHH--hhhhcccccCCcceeeecCCcceEeeCCceEEEecCHHHhhh
Confidence 66788999999865344455566543 222221111 12333445556666674 456668887443
No 146
>PRK05137 tolB translocation protein TolB; Provisional
Probab=62.36 E-value=1.4e+02 Score=27.95 Aligned_cols=92 Identities=13% Similarity=0.016 Sum_probs=49.9
Q ss_pred ceeEEeeCCCCceeeCCCCCccCCCceEEEEECC-EEEEEec--CceeEEEEeCCCCcEEeccCCcc--CCcEEEEcC-e
Q 021080 148 SQAEMYDPEKDVWVPIPDLHRTHNSACTGVVIGG-KVHVLHK--GLSTVQVLDHMGLGWTVEDYGWL--QGPMAIVHD-S 221 (317)
Q Consensus 148 ~~~~~yd~~t~~W~~~~~~p~~~r~~~~~~~~~g-~lyv~gG--~~~~v~~yd~~~~~W~~~~~~~~--~~~~~~~~~-~ 221 (317)
..++++|+.+++.+.+...+.. .... ...-+| +|++... ....++.+|+.++.-..+..... ..+.-.-++ .
T Consensus 226 ~~i~~~dl~~g~~~~l~~~~g~-~~~~-~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~ 303 (435)
T PRK05137 226 PRVYLLDLETGQRELVGNFPGM-TFAP-RFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQ 303 (435)
T ss_pred CEEEEEECCCCcEEEeecCCCc-ccCc-EECCCCCEEEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCE
Confidence 5677888888877777655433 2221 223345 4544432 34578889998887766654322 112222234 3
Q ss_pred EEEEeC----cEEEEecCCc--eEEE
Q 021080 222 VYLMSH----GLIIKQHRDV--RKVV 241 (317)
Q Consensus 222 ly~~g~----~~~~~yd~~~--W~~v 241 (317)
|+.... ..++.+|.+. .+.+
T Consensus 304 i~f~s~~~g~~~Iy~~d~~g~~~~~l 329 (435)
T PRK05137 304 IVFESDRSGSPQLYVMNADGSNPRRI 329 (435)
T ss_pred EEEEECCCCCCeEEEEECCCCCeEEe
Confidence 443332 3688887655 4444
No 147
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=60.12 E-value=1.5e+02 Score=27.58 Aligned_cols=92 Identities=8% Similarity=-0.104 Sum_probs=47.3
Q ss_pred EEeeCCCCceeeCCCCCccCCCceEEEEECCEEEEEecCceeEEEEeCCCCcEEeccCCccCCc----EEE--EcCeEEE
Q 021080 151 EMYDPEKDVWVPIPDLHRTHNSACTGVVIGGKVHVLHKGLSTVQVLDHMGLGWTVEDYGWLQGP----MAI--VHDSVYL 224 (317)
Q Consensus 151 ~~yd~~t~~W~~~~~~p~~~r~~~~~~~~~g~lyv~gG~~~~v~~yd~~~~~W~~~~~~~~~~~----~~~--~~~~ly~ 224 (317)
.++|..|.+-...=.=+.. ......-.-||+....|+..+.+-++|++..+= +..++.+.. +.. ..|.+.+
T Consensus 328 RvWDlRtgr~im~L~gH~k-~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~--ly~ipAH~nlVS~Vk~~p~~g~fL~ 404 (459)
T KOG0272|consen 328 RVWDLRTGRCIMFLAGHIK-EILSVAFSPNGYHLATGSSDNTCKVWDLRMRSE--LYTIPAHSNLVSQVKYSPQEGYFLV 404 (459)
T ss_pred heeecccCcEEEEeccccc-ceeeEeECCCceEEeecCCCCcEEEeeeccccc--ceecccccchhhheEecccCCeEEE
Confidence 3566666654433111221 111122234777777887777788888876542 222222111 111 1334444
Q ss_pred EeC--cEEEEecCCceEEEeccc
Q 021080 225 MSH--GLIIKQHRDVRKVVASAS 245 (317)
Q Consensus 225 ~g~--~~~~~yd~~~W~~v~~~~ 245 (317)
..+ +.+..+.+..|+.+..+-
T Consensus 405 TasyD~t~kiWs~~~~~~~ksLa 427 (459)
T KOG0272|consen 405 TASYDNTVKIWSTRTWSPLKSLA 427 (459)
T ss_pred EcccCcceeeecCCCcccchhhc
Confidence 433 667777888888876654
No 148
>PRK04922 tolB translocation protein TolB; Provisional
Probab=58.80 E-value=1.6e+02 Score=27.53 Aligned_cols=59 Identities=14% Similarity=-0.012 Sum_probs=32.9
Q ss_pred ceeEEeeCCCCceeeCCCCCccCCCceEEEEEC-CEEEEEec--CceeEEEEeCCCCcEEeccC
Q 021080 148 SQAEMYDPEKDVWVPIPDLHRTHNSACTGVVIG-GKVHVLHK--GLSTVQVLDHMGLGWTVEDY 208 (317)
Q Consensus 148 ~~~~~yd~~t~~W~~~~~~p~~~r~~~~~~~~~-g~lyv~gG--~~~~v~~yd~~~~~W~~~~~ 208 (317)
..++.+|..+++.+.+..-. . .....+..-+ .+|++..+ ....+..+|+.++....+..
T Consensus 316 ~~iy~~dl~~g~~~~lt~~g-~-~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt~ 377 (433)
T PRK04922 316 PQIYRVAASGGSAERLTFQG-N-YNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTLTP 377 (433)
T ss_pred ceEEEEECCCCCeEEeecCC-C-CccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEECCC
Confidence 35777777777776664211 1 1111122224 45555543 23468899998888776653
No 149
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=58.20 E-value=1.2e+02 Score=26.02 Aligned_cols=44 Identities=16% Similarity=-0.123 Sum_probs=27.2
Q ss_pred EECCEEEEEecCceeEEEEeCCCCcE-EeccCCccCCcEEEEcCe
Q 021080 178 VIGGKVHVLHKGLSTVQVLDHMGLGW-TVEDYGWLQGPMAIVHDS 221 (317)
Q Consensus 178 ~~~g~lyv~gG~~~~v~~yd~~~~~W-~~~~~~~~~~~~~~~~~~ 221 (317)
--.|+|||..=....|+.+||.+++- .++.-+.+..+.|+.+|+
T Consensus 220 D~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGk 264 (310)
T KOG4499|consen 220 DTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGK 264 (310)
T ss_pred ccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCC
Confidence 33788998765556799999999873 333322234455555543
No 150
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=57.04 E-value=1.4e+02 Score=26.52 Aligned_cols=110 Identities=10% Similarity=0.096 Sum_probs=48.7
Q ss_pred CCceeeCCCCCccCCCceEEEEECCEEEEEecCceeEEEEeCCCCcEEeccCCcc-CCcEE--EEcCeEEEEe-CcEEEE
Q 021080 157 KDVWVPIPDLHRTHNSACTGVVIGGKVHVLHKGLSTVQVLDHMGLGWTVEDYGWL-QGPMA--IVHDSVYLMS-HGLIIK 232 (317)
Q Consensus 157 t~~W~~~~~~p~~~r~~~~~~~~~g~lyv~gG~~~~v~~yd~~~~~W~~~~~~~~-~~~~~--~~~~~ly~~g-~~~~~~ 232 (317)
-.+|+.+..-... -.......-+|++++++..-+.....|+....|........ +.... .-++.++++. |+.++.
T Consensus 133 G~tW~~~~~~~~g-s~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~ 211 (302)
T PF14870_consen 133 GKTWQAVVSETSG-SINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLARGGQIQF 211 (302)
T ss_dssp TSSEEEEE-S-----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEETTTEEEE
T ss_pred CCCeeEcccCCcc-eeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEeCCcEEEE
Confidence 4589877543323 21212223466766666544556678999999987765422 22222 2367787776 456665
Q ss_pred ec-CCc---eEEEeccccccccccEEEEEE--CCeEEEEeCc
Q 021080 233 QH-RDV---RKVVASASEFRRRIGFAMIGM--GDDIYVIGGV 268 (317)
Q Consensus 233 yd-~~~---W~~v~~~~~~~~r~~~~~~~~--~~~lyv~GG~ 268 (317)
=+ +.. |++.. .|......+.--+++ .+.+++.||.
T Consensus 212 s~~~~~~~~w~~~~-~~~~~~~~~~ld~a~~~~~~~wa~gg~ 252 (302)
T PF14870_consen 212 SDDPDDGETWSEPI-IPIKTNGYGILDLAYRPPNEIWAVGGS 252 (302)
T ss_dssp EE-TTEEEEE---B--TTSS--S-EEEEEESSSS-EEEEEST
T ss_pred ccCCCCcccccccc-CCcccCceeeEEEEecCCCCEEEEeCC
Confidence 55 332 88832 232123343333344 4789999884
No 151
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=52.61 E-value=2.1e+02 Score=27.17 Aligned_cols=96 Identities=11% Similarity=0.040 Sum_probs=47.0
Q ss_pred eEEEEeCCCCcEEeccCCccC-CcEEEEcCeEEEEeC----cEEEEecCCc--eEEEeccccccccccEEEEEECCeEEE
Q 021080 192 TVQVLDHMGLGWTVEDYGWLQ-GPMAIVHDSVYLMSH----GLIIKQHRDV--RKVVASASEFRRRIGFAMIGMGDDIYV 264 (317)
Q Consensus 192 ~v~~yd~~~~~W~~~~~~~~~-~~~~~~~~~ly~~g~----~~~~~yd~~~--W~~v~~~~~~~~r~~~~~~~~~~~lyv 264 (317)
.++.=--...+++++-.+..+ ..-+.+++++|.+.. +.++.-|.+. -++-....+ ....-+.-+|+-.|
T Consensus 207 klWis~d~g~tFeK~vdl~~~vS~PmIV~~RvYFlsD~eG~GnlYSvdldGkDlrrHTnFtd----YY~R~~nsDGkrIv 282 (668)
T COG4946 207 KLWISSDGGKTFEKFVDLDGNVSSPMIVGERVYFLSDHEGVGNLYSVDLDGKDLRRHTNFTD----YYPRNANSDGKRIV 282 (668)
T ss_pred eEEEEecCCcceeeeeecCCCcCCceEEcceEEEEecccCccceEEeccCCchhhhcCCchh----ccccccCCCCcEEE
Confidence 333333333344444333332 223467999998864 5666665543 222111111 11122333455444
Q ss_pred EeCcccCCCCceecccCcceeEeecCCCCCceeecc-cCCCCC
Q 021080 265 IGGVIGPDRWNWDIKPMSDVDVLTVGAERPTWRQVS-PMTRCR 306 (317)
Q Consensus 265 ~GG~~~~~~~~~~~~~~~~v~~yd~~~~~~~W~~~~-~~p~~~ 306 (317)
+ +...+|+.|||+++ +-+.+. .+|..|
T Consensus 283 F-------------q~~GdIylydP~td--~lekldI~lpl~r 310 (668)
T COG4946 283 F-------------QNAGDIYLYDPETD--SLEKLDIGLPLDR 310 (668)
T ss_pred E-------------ecCCcEEEeCCCcC--cceeeecCCcccc
Confidence 4 12238999999998 666552 245444
No 152
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=51.36 E-value=1.6e+02 Score=25.39 Aligned_cols=27 Identities=19% Similarity=-0.048 Sum_probs=21.0
Q ss_pred cCceEEEEEeCCCCceEEEeCCCCCEeec
Q 021080 54 SENLLCVCAFDPENLWQLYDPLRDLWITL 82 (317)
Q Consensus 54 ~~~~l~v~gg~~~~~~~~yd~~~~~W~~~ 82 (317)
.++.++..||+ ..+++.|.++++-+..
T Consensus 125 ~enSi~~AgGD--~~~y~~dlE~G~i~r~ 151 (325)
T KOG0649|consen 125 SENSILFAGGD--GVIYQVDLEDGRIQRE 151 (325)
T ss_pred CCCcEEEecCC--eEEEEEEecCCEEEEE
Confidence 46777777874 4788999999988765
No 153
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=49.81 E-value=2.1e+02 Score=26.18 Aligned_cols=96 Identities=9% Similarity=-0.119 Sum_probs=56.8
Q ss_pred ceeEEeeCCCCceeeCCCCCccCCCceEEE-EECCEEEEEec---------CceeEEEEeCCCCcEE-eccCCcc-----
Q 021080 148 SQAEMYDPEKDVWVPIPDLHRTHNSACTGV-VIGGKVHVLHK---------GLSTVQVLDHMGLGWT-VEDYGWL----- 211 (317)
Q Consensus 148 ~~~~~yd~~t~~W~~~~~~p~~~r~~~~~~-~~~g~lyv~gG---------~~~~v~~yd~~~~~W~-~~~~~~~----- 211 (317)
+.+.++|..+.+ .+.-.+.+ ...+... --+..||+... ..+.|..||+++.+=. +++....
T Consensus 27 ~~v~ViD~~~~~--v~g~i~~G-~~P~~~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~ 103 (352)
T TIGR02658 27 TQVYTIDGEAGR--VLGMTDGG-FLPNPVVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLV 103 (352)
T ss_pred ceEEEEECCCCE--EEEEEEcc-CCCceeECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhc
Confidence 677888877744 33333333 2222223 33557999876 5688999999998754 3332111
Q ss_pred ---CCcEEE-EcC-eEEEEe---CcEEEEecCCceEEEecccc
Q 021080 212 ---QGPMAI-VHD-SVYLMS---HGLIIKQHRDVRKVVASASE 246 (317)
Q Consensus 212 ---~~~~~~-~~~-~ly~~g---~~~~~~yd~~~W~~v~~~~~ 246 (317)
+...+. -+| .+|+.- .+.+-..|.++.+.+..++.
T Consensus 104 ~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v 146 (352)
T TIGR02658 104 GTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV 146 (352)
T ss_pred cCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeC
Confidence 112222 244 477654 36888888888777776664
No 154
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=48.44 E-value=1.9e+02 Score=25.27 Aligned_cols=53 Identities=19% Similarity=0.249 Sum_probs=33.8
Q ss_pred EEEEECCEEEEEec------CceeEEEEeCCCCcEEeccCCcc----CCcEEEEcCeEEEEeC
Q 021080 175 TGVVIGGKVHVLHK------GLSTVQVLDHMGLGWTVEDYGWL----QGPMAIVHDSVYLMSH 227 (317)
Q Consensus 175 ~~~~~~g~lyv~gG------~~~~v~~yd~~~~~W~~~~~~~~----~~~~~~~~~~ly~~g~ 227 (317)
..-.++|+||+... ..+.+.+-+.....|+.+.-.-. ..+.+.+++.||+++.
T Consensus 195 CvkyY~g~LyLtTRgt~~~~~GS~L~rs~d~G~~w~slrfp~nvHhtnlPFakvgD~l~mFgs 257 (367)
T PF12217_consen 195 CVKYYDGVLYLTTRGTLPTNPGSSLHRSDDNGQNWSSLRFPNNVHHTNLPFAKVGDVLYMFGS 257 (367)
T ss_dssp EEEEETTEEEEEEEES-TTS---EEEEESSTTSS-EEEE-TT---SS---EEEETTEEEEEEE
T ss_pred hhhhhCCEEEEEEcCcCCCCCcceeeeecccCCchhhccccccccccCCCceeeCCEEEEEec
Confidence 44578999999875 22456666777778987642211 5688999999999974
No 155
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=47.10 E-value=3e+02 Score=27.25 Aligned_cols=43 Identities=16% Similarity=0.281 Sum_probs=28.2
Q ss_pred CCceEEEeCCCCCEeecCCCCccccccCCeeEEEe-CCEEEEEcCc
Q 021080 66 ENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVST-AGKLFVLGGG 110 (317)
Q Consensus 66 ~~~~~~yd~~~~~W~~~~~~p~~~~~r~~~~~~~~-~~~iyv~GG~ 110 (317)
...++.||++. .|..-+.++.++ -|.--+++-. ++++|-.|+.
T Consensus 46 ~g~IEiwN~~~-~w~~~~vi~g~~-drsIE~L~W~e~~RLFS~g~s 89 (691)
T KOG2048|consen 46 DGNIEIWNLSN-NWFLEPVIHGPE-DRSIESLAWAEGGRLFSSGLS 89 (691)
T ss_pred CCcEEEEccCC-CceeeEEEecCC-CCceeeEEEccCCeEEeecCC
Confidence 46889999987 786655554432 1444455555 7889988864
No 156
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=46.21 E-value=2.1e+02 Score=25.35 Aligned_cols=23 Identities=17% Similarity=0.306 Sum_probs=15.3
Q ss_pred CCeEEEEeCcccCCCCceecccCcceeEeecCCC
Q 021080 259 GDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAE 292 (317)
Q Consensus 259 ~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~ 292 (317)
-+.-||++|.++. .+++|+.+++
T Consensus 242 Pds~Fvl~gs~dg-----------~i~vw~~~tg 264 (311)
T KOG1446|consen 242 PDSKFVLSGSDDG-----------TIHVWNLETG 264 (311)
T ss_pred CCCcEEEEecCCC-----------cEEEEEcCCC
Confidence 4555677775544 6778888776
No 157
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures]
Probab=45.35 E-value=2e+02 Score=24.75 Aligned_cols=63 Identities=14% Similarity=0.108 Sum_probs=38.4
Q ss_pred ceEEEEECCEEEEEec---CceeE-EEEeCCCCcEEeccCCcc----CC---cEEEEcCeEEEEeCcEEEEecC
Q 021080 173 ACTGVVIGGKVHVLHK---GLSTV-QVLDHMGLGWTVEDYGWL----QG---PMAIVHDSVYLMSHGLIIKQHR 235 (317)
Q Consensus 173 ~~~~~~~~g~lyv~gG---~~~~v-~~yd~~~~~W~~~~~~~~----~~---~~~~~~~~ly~~g~~~~~~yd~ 235 (317)
...+..+-|.+|++-. ....| .+||+.+++=+.+.-+++ .. .....+.+||+.+.+.+..|+.
T Consensus 172 ~~~aF~iCGvLY~v~S~~~~~~~i~yaydt~~~~~~~~~ipf~N~y~~~~~idYNP~D~~LY~wdng~~l~y~l 245 (249)
T KOG3545|consen 172 AGNAFMICGVLYVVHSYNCTHTQISYAYDTTTGTQERIDLPFPNPYSYATMIDYNPRDRRLYAWDNGHQLTYNL 245 (249)
T ss_pred cCceEEEeeeeEEEeccccCCceEEEEEEcCCCceecccccccchhhhhhccCCCcccceeeEecCCcEEEEEe
Confidence 3356677788888876 22233 689999887655543333 11 2222366788888776666654
No 158
>PRK02889 tolB translocation protein TolB; Provisional
Probab=45.30 E-value=2.6e+02 Score=26.05 Aligned_cols=93 Identities=14% Similarity=0.107 Sum_probs=42.7
Q ss_pred ceeEEeeCCCCceeeCCCCCccCCCceEEEEECC-EEEEEec--CceeEEEEeCCCCcEEeccCCcc--CCcEEEEcCe-
Q 021080 148 SQAEMYDPEKDVWVPIPDLHRTHNSACTGVVIGG-KVHVLHK--GLSTVQVLDHMGLGWTVEDYGWL--QGPMAIVHDS- 221 (317)
Q Consensus 148 ~~~~~yd~~t~~W~~~~~~p~~~r~~~~~~~~~g-~lyv~gG--~~~~v~~yd~~~~~W~~~~~~~~--~~~~~~~~~~- 221 (317)
..++++|..+++=..+...+.. . ...+..-|| +|++... ....++.+|..++....+..... ..+.-.-+|+
T Consensus 220 ~~I~~~dl~~g~~~~l~~~~g~-~-~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~ 297 (427)
T PRK02889 220 PVVYVHDLATGRRRVVANFKGS-N-SAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRS 297 (427)
T ss_pred cEEEEEECCCCCEEEeecCCCC-c-cceEECCCCCEEEEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCE
Confidence 3456666665543334333221 1 111222244 4544332 34578888887776655543221 1122222443
Q ss_pred EEEEeC----cEEEEecCCc--eEEEe
Q 021080 222 VYLMSH----GLIIKQHRDV--RKVVA 242 (317)
Q Consensus 222 ly~~g~----~~~~~yd~~~--W~~v~ 242 (317)
|+.... ..++.++.+. .+.+.
T Consensus 298 l~f~s~~~g~~~Iy~~~~~~g~~~~lt 324 (427)
T PRK02889 298 IYFTSDRGGAPQIYRMPASGGAAQRVT 324 (427)
T ss_pred EEEEecCCCCcEEEEEECCCCceEEEe
Confidence 444332 3577776543 55443
No 159
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=44.45 E-value=2.5e+02 Score=25.63 Aligned_cols=82 Identities=13% Similarity=0.128 Sum_probs=46.4
Q ss_pred ceeEEeeCCCCceeeCCCCCccCCCceEEEEECCEEEEEecCceeEEEEeCCCC--cEEeccCCcc-----CCcEEEEcC
Q 021080 148 SQAEMYDPEKDVWVPIPDLHRTHNSACTGVVIGGKVHVLHKGLSTVQVLDHMGL--GWTVEDYGWL-----QGPMAIVHD 220 (317)
Q Consensus 148 ~~~~~yd~~t~~W~~~~~~p~~~r~~~~~~~~~g~lyv~gG~~~~v~~yd~~~~--~W~~~~~~~~-----~~~~~~~~~ 220 (317)
...++++..++.|--.-.=... --.+....++|.+.+.|+....+.+++-.++ +|......-. .|+ .+
T Consensus 86 D~AflW~~~~ge~~~eltgHKD-SVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp----~a 160 (399)
T KOG0296|consen 86 DLAFLWDISTGEFAGELTGHKD-SVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHP----RA 160 (399)
T ss_pred ceEEEEEccCCcceeEecCCCC-ceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecc----cc
Confidence 4567777777775322111111 1223445678999899887777888777655 5776532211 333 23
Q ss_pred eEEEEeC--cEEEEec
Q 021080 221 SVYLMSH--GLIIKQH 234 (317)
Q Consensus 221 ~ly~~g~--~~~~~yd 234 (317)
.++++|. +.+|.|.
T Consensus 161 ~illAG~~DGsvWmw~ 176 (399)
T KOG0296|consen 161 HILLAGSTDGSVWMWQ 176 (399)
T ss_pred cEEEeecCCCcEEEEE
Confidence 5556654 5666665
No 160
>PF13013 F-box-like_2: F-box-like domain
Probab=44.45 E-value=18 Score=26.84 Aligned_cols=29 Identities=14% Similarity=-0.022 Sum_probs=24.7
Q ss_pred CCCCcHHHHHHHhccCCCCchhhhhhcCH
Q 021080 5 IEGLPDAVALRCLARVPFFLHPKLELVSR 33 (317)
Q Consensus 5 ~~~Lp~d~~~~~l~r~p~~~~~~~~~v~k 33 (317)
+..||+||++.|+.......+..+...|+
T Consensus 22 l~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 22 LLDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred hhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 67799999999999999888877766665
No 161
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only]
Probab=43.06 E-value=3.3e+02 Score=26.61 Aligned_cols=136 Identities=14% Similarity=0.149 Sum_probs=72.9
Q ss_pred EeeCCCCceeeCCCCC-ccC-CCce----EEEEECCEEEEEecCceeEEEEeCCCCcEEeccCCccCC-cEE-EE-cCeE
Q 021080 152 MYDPEKDVWVPIPDLH-RTH-NSAC----TGVVIGGKVHVLHKGLSTVQVLDHMGLGWTVEDYGWLQG-PMA-IV-HDSV 222 (317)
Q Consensus 152 ~yd~~t~~W~~~~~~p-~~~-r~~~----~~~~~~g~lyv~gG~~~~v~~yd~~~~~W~~~~~~~~~~-~~~-~~-~~~l 222 (317)
.-.|.-..|+.+++-+ ... -.+. =++..||+++.--| |-+.|+..++|..++.+..-. ..+ .+ ...|
T Consensus 212 ~~~P~GraW~~i~~~t~L~qISagPtg~VwAvt~nG~vf~R~G----VsRqNp~GdsWkdI~tP~~a~~~v~iSvGt~t~ 287 (705)
T KOG3669|consen 212 VDRPCGRAWKVICPYTDLSQISAGPTGVVWAVTENGAVFYREG----VSRQNPEGDSWKDIVTPRQALEPVCISVGTQTL 287 (705)
T ss_pred CCCCCCceeeecCCCCccceEeecCcceEEEEeeCCcEEEEec----ccccCCCCchhhhccCcccccceEEEEeccceE
Confidence 3457778898886554 110 1111 24567888888766 778899999999887654311 111 12 3456
Q ss_pred EEEeC-cEEEEe------cCCc-----eEEEecccc-ccccccEEEEEECCeEEEEeCcccCCCCceecccCcceeEeec
Q 021080 223 YLMSH-GLIIKQ------HRDV-----RKVVASASE-FRRRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTV 289 (317)
Q Consensus 223 y~~g~-~~~~~y------d~~~-----W~~v~~~~~-~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~ 289 (317)
++++. +.++.- .++. |......+. ......+..+..++.++.++-..... ....|.-=++
T Consensus 288 Waldndg~lwfrrgii~~kpeg~h~~e~~~s~~~~v~tdq~isf~SV~~ndqVfaisa~~~i~-------~R~GVt~~~P 360 (705)
T KOG3669|consen 288 WALDNDGNLWFRRGIISKKPEGDHDHEWQVSITDYVVTDQCISFQSVIHNDQVFAISAQAKIE-------VREGVTDKLP 360 (705)
T ss_pred EEEecCCcEEEEecccccCcccccccccccccccceEEecceeeEEEEecceEEEEeccccee-------eeccccccCc
Confidence 66654 222211 1111 333332221 13445566677788888887654221 1223333455
Q ss_pred CCCCCceeecc
Q 021080 290 GAERPTWRQVS 300 (317)
Q Consensus 290 ~~~~~~W~~~~ 300 (317)
... .|+.+.
T Consensus 361 ~Gk--~w~liq 369 (705)
T KOG3669|consen 361 MGK--WWQLIQ 369 (705)
T ss_pred ccc--ceeeee
Confidence 555 666653
No 162
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=43.05 E-value=13 Score=34.46 Aligned_cols=38 Identities=11% Similarity=0.145 Sum_probs=34.0
Q ss_pred CCCcHHHHHHHhccCCCCchhhhhhcCHhHHHhhcChh
Q 021080 6 EGLPDAVALRCLARVPFFLHPKLELVSRSWRAAIRSPE 43 (317)
Q Consensus 6 ~~Lp~d~~~~~l~r~p~~~~~~~~~v~k~w~~l~~s~~ 43 (317)
-.||.|+++.+++.+..+.+++.+.+|+.|+.+..+..
T Consensus 73 ~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~ 110 (483)
T KOG4341|consen 73 RSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGS 110 (483)
T ss_pred ccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccc
Confidence 35999999999999999999999999999998866543
No 163
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=40.83 E-value=1.5e+02 Score=30.61 Aligned_cols=122 Identities=8% Similarity=-0.001 Sum_probs=73.6
Q ss_pred ceEEEEECCEEEEEecCceeEEEEeCCCCcEEeccCCcc-CCcEEEEcCeEEEEeC--cEEEEecCCceEEEeccccccc
Q 021080 173 ACTGVVIGGKVHVLHKGLSTVQVLDHMGLGWTVEDYGWL-QGPMAIVHDSVYLMSH--GLIIKQHRDVRKVVASASEFRR 249 (317)
Q Consensus 173 ~~~~~~~~g~lyv~gG~~~~v~~yd~~~~~W~~~~~~~~-~~~~~~~~~~ly~~g~--~~~~~yd~~~W~~v~~~~~~~~ 249 (317)
.++...++..-.+.||.-..+..+|+.+.+=.....-.. .......+|+...+|. +.|..-|+...+.+-.... .
T Consensus 139 M~~~~~~~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~a--H 216 (1118)
T KOG1275|consen 139 MASSLHMGPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRYNNRNLFCGDTRGTVFLRDPNSFETIHTFDA--H 216 (1118)
T ss_pred HHHHhccCCcceeecchhhheeeeecccceeeeeeeccCCceEEEEecCcEEEeecccceEEeecCCcCceeeeeec--c
Confidence 334445677788888877788899998877554432211 1122233678777776 7888889888666544431 1
Q ss_pred cccEEEEEECCeEEEEeCcccCCCCceecccCcceeEeecCCCCCceeecccCC
Q 021080 250 RIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAERPTWRQVSPMT 303 (317)
Q Consensus 250 r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~~~~W~~~~~~p 303 (317)
-....-.-++|.+++.-|++.+.+.-. .-.-+.+||+..- +.++|++
T Consensus 217 s~siSDfDv~GNlLitCG~S~R~~~l~---~D~FvkVYDLRmm----ral~PI~ 263 (1118)
T KOG1275|consen 217 SGSISDFDVQGNLLITCGYSMRRYNLA---MDPFVKVYDLRMM----RALSPIQ 263 (1118)
T ss_pred ccceeeeeccCCeEEEeeccccccccc---ccchhhhhhhhhh----hccCCcc
Confidence 111223345677778888776642111 1124789999866 5666653
No 164
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=39.87 E-value=3.3e+02 Score=25.66 Aligned_cols=31 Identities=23% Similarity=0.322 Sum_probs=26.4
Q ss_pred cEEEEcCeEEEEeCcEEEEecCCceEEEecc
Q 021080 214 PMAIVHDSVYLMSHGLIIKQHRDVRKVVASA 244 (317)
Q Consensus 214 ~~~~~~~~ly~~g~~~~~~yd~~~W~~v~~~ 244 (317)
.+.-+++-+|++|+++++.+|-+.|+.++..
T Consensus 570 RA~fi~dylY~vg~~ev~~ldenswe~Vge~ 600 (603)
T COG4880 570 RAFFIKDYLYLVGGNEVWKLDENSWEVVGEA 600 (603)
T ss_pred eeEEecceEEEeccceeEEeccchHhhhhhe
Confidence 4456789999999999999999999988653
No 165
>PRK03629 tolB translocation protein TolB; Provisional
Probab=39.81 E-value=3.2e+02 Score=25.51 Aligned_cols=58 Identities=14% Similarity=-0.028 Sum_probs=29.6
Q ss_pred eeEEeeCCCCceeeCCCCCccCCCceEEEEECC-EEEEEec--CceeEEEEeCCCCcEEeccC
Q 021080 149 QAEMYDPEKDVWVPIPDLHRTHNSACTGVVIGG-KVHVLHK--GLSTVQVLDHMGLGWTVEDY 208 (317)
Q Consensus 149 ~~~~yd~~t~~W~~~~~~p~~~r~~~~~~~~~g-~lyv~gG--~~~~v~~yd~~~~~W~~~~~ 208 (317)
.++.+|..+.+-+.+.... . ........-+| .|++.+. ....++.+|+.++.++.+..
T Consensus 312 ~Iy~~d~~~g~~~~lt~~~-~-~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~ 372 (429)
T PRK03629 312 QVYKVNINGGAPQRITWEG-S-QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTD 372 (429)
T ss_pred eEEEEECCCCCeEEeecCC-C-CccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeCC
Confidence 4555666655544442211 1 11111222344 4444433 23568889999888877653
No 166
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=39.24 E-value=3.2e+02 Score=25.40 Aligned_cols=89 Identities=10% Similarity=0.077 Sum_probs=45.1
Q ss_pred ECCEEEEEecCceeEEEEeCCCCcEEeccCCcc-CCcE--EEEcCeEEEEeC-cEEEE-ecCCc-eE--EEecccccccc
Q 021080 179 IGGKVHVLHKGLSTVQVLDHMGLGWTVEDYGWL-QGPM--AIVHDSVYLMSH-GLIIK-QHRDV-RK--VVASASEFRRR 250 (317)
Q Consensus 179 ~~g~lyv~gG~~~~v~~yd~~~~~W~~~~~~~~-~~~~--~~~~~~ly~~g~-~~~~~-yd~~~-W~--~v~~~~~~~~r 250 (317)
-+|+++++|-.-+.....|.....|+.+..... .... ...++.+++++. +.++. -|..+ |+ .....+....+
T Consensus 248 ~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~G~l~~S~d~G~~~~~~~f~~~~~~~~~ 327 (398)
T PLN00033 248 PDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLTRGGGLYVSKGTGLTEEDFDFEEADIKSRG 327 (398)
T ss_pred CCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEeCCceEEEecCCCCcccccceeecccCCCC
Confidence 355666665433334445665566998775543 2222 224678888875 44443 34433 74 33333321122
Q ss_pred cc-EEEEEE-CCeEEEEeC
Q 021080 251 IG-FAMIGM-GDDIYVIGG 267 (317)
Q Consensus 251 ~~-~~~~~~-~~~lyv~GG 267 (317)
.. ..+... ++.+++.|.
T Consensus 328 ~~l~~v~~~~d~~~~a~G~ 346 (398)
T PLN00033 328 FGILDVGYRSKKEAWAAGG 346 (398)
T ss_pred cceEEEEEcCCCcEEEEEC
Confidence 22 223333 567887775
No 167
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=38.58 E-value=1.4e+02 Score=21.12 Aligned_cols=23 Identities=17% Similarity=-0.107 Sum_probs=16.5
Q ss_pred CceeEEEEeCCCCcEEeccCCcc
Q 021080 189 GLSTVQVLDHMGLGWTVEDYGWL 211 (317)
Q Consensus 189 ~~~~v~~yd~~~~~W~~~~~~~~ 211 (317)
....+..|||.+++.+.+-....
T Consensus 35 ~~GRll~ydp~t~~~~vl~~~L~ 57 (89)
T PF03088_consen 35 PTGRLLRYDPSTKETTVLLDGLY 57 (89)
T ss_dssp --EEEEEEETTTTEEEEEEEEES
T ss_pred CCcCEEEEECCCCeEEEehhCCC
Confidence 35679999999999887754433
No 168
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=38.34 E-value=2.9e+02 Score=24.56 Aligned_cols=111 Identities=8% Similarity=-0.059 Sum_probs=57.5
Q ss_pred CCEEEEEecCceeEEEEeCCCCcEEeccCCcc---CC-cEEEE-cCeEEEEeC--cEEEEecCCceEEEecccccccccc
Q 021080 180 GGKVHVLHKGLSTVQVLDHMGLGWTVEDYGWL---QG-PMAIV-HDSVYLMSH--GLIIKQHRDVRKVVASASEFRRRIG 252 (317)
Q Consensus 180 ~g~lyv~gG~~~~v~~yd~~~~~W~~~~~~~~---~~-~~~~~-~~~ly~~g~--~~~~~yd~~~W~~v~~~~~~~~r~~ 252 (317)
+++.||.||.......+|.+...=. ..+.. .. ++... +|.-|+.|. ..+..||...=+++.-......-++
T Consensus 198 ~~ntFvSg~cD~~aklWD~R~~~c~--qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~g 275 (343)
T KOG0286|consen 198 DGNTFVSGGCDKSAKLWDVRSGQCV--QTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICG 275 (343)
T ss_pred CCCeEEecccccceeeeeccCccee--EeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCC
Confidence 7788999986556666776655311 11111 01 11111 334444443 4566777665333332221122222
Q ss_pred EE--EEEECCeEEEEeCcccCCCCceecccCcceeEeecCCCCCceeecccCCCCCCc
Q 021080 253 FA--MIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAERPTWRQVSPMTRCRGT 308 (317)
Q Consensus 253 ~~--~~~~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~~~~W~~~~~~p~~~~~ 308 (317)
.. .....|+|++.|. .+. .+.+||.-.. +++..+-...+.
T Consensus 276 itSv~FS~SGRlLfagy-~d~-----------~c~vWDtlk~----e~vg~L~GHeNR 317 (343)
T KOG0286|consen 276 ITSVAFSKSGRLLFAGY-DDF-----------TCNVWDTLKG----ERVGVLAGHENR 317 (343)
T ss_pred ceeEEEcccccEEEeee-cCC-----------ceeEeecccc----ceEEEeeccCCe
Confidence 22 2344788888773 333 5678888766 666666555555
No 169
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=38.07 E-value=4.1e+02 Score=26.32 Aligned_cols=76 Identities=8% Similarity=0.091 Sum_probs=42.0
Q ss_pred eeCCCCCccCCCceEEE---EECCEEEEEecCceeEEEEeCCCCcEEeccCCcc------CCcEEE--EcCeEEEEeC-c
Q 021080 161 VPIPDLHRTHNSACTGV---VIGGKVHVLHKGLSTVQVLDHMGLGWTVEDYGWL------QGPMAI--VHDSVYLMSH-G 228 (317)
Q Consensus 161 ~~~~~~p~~~r~~~~~~---~~~g~lyv~gG~~~~v~~yd~~~~~W~~~~~~~~------~~~~~~--~~~~ly~~g~-~ 228 (317)
+.+..+|.. +...+.. .-++++++..-...+++.++.++.+..++...-+ -..+++ .|+-|-+++. +
T Consensus 419 ~~v~~~~~~-~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g 497 (691)
T KOG2048|consen 419 INVDDVPLA-LLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTRG 497 (691)
T ss_pred EEeccchhh-hccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEeccc
Confidence 344556665 3232222 2355666664344578888888887765543322 112222 2444555554 7
Q ss_pred EEEEecCCc
Q 021080 229 LIIKQHRDV 237 (317)
Q Consensus 229 ~~~~yd~~~ 237 (317)
.++.|+.++
T Consensus 498 ~I~v~nl~~ 506 (691)
T KOG2048|consen 498 QIFVYNLET 506 (691)
T ss_pred eEEEEEccc
Confidence 899999887
No 170
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=36.60 E-value=4e+02 Score=25.70 Aligned_cols=227 Identities=11% Similarity=0.019 Sum_probs=0.0
Q ss_pred HhHHHhhcChhhHHHHHhcCCcCceEEEEEeCCCCceEEEeCCCCCEeecC-------CCCccccccCCeeEEEeCC---
Q 021080 33 RSWRAAIRSPELFKARQEVGSSENLLCVCAFDPENLWQLYDPLRDLWITLP-------VLPSKIRHLAHFGVVSTAG--- 102 (317)
Q Consensus 33 k~w~~l~~s~~~~~~~~~~~~~~~~l~v~gg~~~~~~~~yd~~~~~W~~~~-------~~p~~~~~r~~~~~~~~~~--- 102 (317)
+.|+.|..+..-.-.-.+...+++.+++..| ....-.||-.--+|.+.. .|-. ..+|.+....+
T Consensus 204 ~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg--~aqakl~DRdG~~~~e~~KGDQYI~Dm~n----TKGHia~lt~g~wh 277 (641)
T KOG0772|consen 204 RSFRQLQPCETHQINSLQYSVTGDQILVVSG--SAQAKLLDRDGFEIVEFSKGDQYIRDMYN----TKGHIAELTCGCWH 277 (641)
T ss_pred hhhhccCcccccccceeeecCCCCeEEEEec--CcceeEEccCCceeeeeeccchhhhhhhc----cCCceeeeeccccc
Q ss_pred ----EEEEEcCcCCCCCCCCCCCCCcccccceeEecccCCCCCCCcCCCceeEEeeCCCCceeeCCCCCccCCCceEEEE
Q 021080 103 ----KLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRGFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHNSACTGVV 178 (317)
Q Consensus 103 ----~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~G~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~r~~~~~~~ 178 (317)
..|+..+.+ .+..+|- ..+..+...++-+.... .. |...+++.
T Consensus 278 P~~k~~FlT~s~D--------------gtlRiWd----------v~~~k~q~qVik~k~~~--------g~-Rv~~tsC~ 324 (641)
T KOG0772|consen 278 PDNKEEFLTCSYD--------------GTLRIWD----------VNNTKSQLQVIKTKPAG--------GK-RVPVTSCA 324 (641)
T ss_pred cCcccceEEecCC--------------CcEEEEe----------cCCchhheeEEeeccCC--------Cc-ccCceeee
Q ss_pred E--CCEEEEEecCceeEEEEeCCCCcEEeccCCcc----------CCcEEEEcCeEEEEeC--cEEEEecCCc-------
Q 021080 179 I--GGKVHVLHKGLSTVQVLDHMGLGWTVEDYGWL----------QGPMAIVHDSVYLMSH--GLIIKQHRDV------- 237 (317)
Q Consensus 179 ~--~g~lyv~gG~~~~v~~yd~~~~~W~~~~~~~~----------~~~~~~~~~~ly~~g~--~~~~~yd~~~------- 237 (317)
+ +|+++..|-...+|+.+|. +.|..-+.+.. .+-....+|+..+-.| +.+..+|..+
T Consensus 325 ~nrdg~~iAagc~DGSIQ~W~~--~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~ 402 (641)
T KOG0772|consen 325 WNRDGKLIAAGCLDGSIQIWDK--GSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNV 402 (641)
T ss_pred cCCCcchhhhcccCCceeeeec--CCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhh
Q ss_pred eEEEeccccccccccEEEEEECCeEEEEeCcccCCCCceecccCcceeEeecCCCCCceeecccCCCCCCceeeeeE
Q 021080 238 RKVVASASEFRRRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAERPTWRQVSPMTRCRGTILGCTQ 314 (317)
Q Consensus 238 W~~v~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~~~~W~~~~~~p~~~~~~~~~~~ 314 (317)
|..+...-. ..-++..=+++|++.|-....+ .....++.||..+- +++..++.+-..++.|..
T Consensus 403 ~tgL~t~~~----~tdc~FSPd~kli~TGtS~~~~------~~~g~L~f~d~~t~----d~v~ki~i~~aSvv~~~W 465 (641)
T KOG0772|consen 403 RTGLPTPFP----GTDCCFSPDDKLILTGTSAPNG------MTAGTLFFFDRMTL----DTVYKIDISTASVVRCLW 465 (641)
T ss_pred hcCCCccCC----CCccccCCCceEEEecccccCC------CCCceEEEEeccce----eeEEEecCCCceEEEEee
No 171
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=36.33 E-value=3.4e+02 Score=24.84 Aligned_cols=99 Identities=14% Similarity=0.063 Sum_probs=55.4
Q ss_pred CEEEEEecCceeEEEEeCCCCc-EEeccCCccCCcEEEE--c-CeEEEEeC-cEEEEecCCceEEEeccccccccccEEE
Q 021080 181 GKVHVLHKGLSTVQVLDHMGLG-WTVEDYGWLQGPMAIV--H-DSVYLMSH-GLIIKQHRDVRKVVASASEFRRRIGFAM 255 (317)
Q Consensus 181 g~lyv~gG~~~~v~~yd~~~~~-W~~~~~~~~~~~~~~~--~-~~ly~~g~-~~~~~yd~~~W~~v~~~~~~~~r~~~~~ 255 (317)
+-+||+-...+.+...|..+.+ -..++.....+..... + ..+|+.+. +.+..+|+.+.+.+...+. +....++
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~--G~~~~~i 83 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKV--GGNPRGI 83 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE---SSEEEEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEec--CCCcceE
Confidence 3455555456778888888765 4455543222222222 2 35888874 7899999998887777763 3333333
Q ss_pred E-EECCeEEEEeCcccCCCCceecccCcceeEeecCCC
Q 021080 256 I-GMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAE 292 (317)
Q Consensus 256 ~-~~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~ 292 (317)
+ +-+|+..+.+.+.. +.+.++|.++.
T Consensus 84 ~~s~DG~~~~v~n~~~-----------~~v~v~D~~tl 110 (369)
T PF02239_consen 84 AVSPDGKYVYVANYEP-----------GTVSVIDAETL 110 (369)
T ss_dssp EE--TTTEEEEEEEET-----------TEEEEEETTT-
T ss_pred EEcCCCCEEEEEecCC-----------CceeEeccccc
Confidence 3 34666555554333 37778888765
No 172
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=35.24 E-value=3.8e+02 Score=25.05 Aligned_cols=128 Identities=12% Similarity=0.105 Sum_probs=67.3
Q ss_pred CceeeCCCCCccCCCceEEEEECCE-EEEEecCceeEEEEeCCCCcEE-eccCCccCCcEEEE-cCeEEEEeC--cEEEE
Q 021080 158 DVWVPIPDLHRTHNSACTGVVIGGK-VHVLHKGLSTVQVLDHMGLGWT-VEDYGWLQGPMAIV-HDSVYLMSH--GLIIK 232 (317)
Q Consensus 158 ~~W~~~~~~p~~~r~~~~~~~~~g~-lyv~gG~~~~v~~yd~~~~~W~-~~~~~~~~~~~~~~-~~~ly~~g~--~~~~~ 232 (317)
..|+.+.. + +-..-++..||+ ++.++ ....+..|+.++..=. .+..--+-.+.+.. ++++.++.- ..+..
T Consensus 347 ~~W~gvr~---~-~v~dlait~Dgk~vl~v~-~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~L 421 (519)
T KOG0293|consen 347 GNWEGVRD---P-KVHDLAITYDGKYVLLVT-VDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHL 421 (519)
T ss_pred hccccccc---c-eeEEEEEcCCCcEEEEEe-cccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEE
Confidence 36776544 3 334445556665 55554 3455666776554311 11111111222222 456666543 67888
Q ss_pred ecCCceEEEeccccccccccEEEEEE---CCeEEEEeCcccCCCCceecccCcceeEeecCCCCCceeecccCCCCC
Q 021080 233 QHRDVRKVVASASEFRRRIGFAMIGM---GDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAERPTWRQVSPMTRCR 306 (317)
Q Consensus 233 yd~~~W~~v~~~~~~~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~~~~W~~~~~~p~~~ 306 (317)
+|.+.|+.+..... ..+..+....+ .+.-|+..|..+. .|++++-.++ ..++.++..-
T Consensus 422 WDl~e~~lv~kY~G-hkq~~fiIrSCFgg~~~~fiaSGSED~-----------kvyIWhr~sg----kll~~LsGHs 482 (519)
T KOG0293|consen 422 WDLEENKLVRKYFG-HKQGHFIIRSCFGGGNDKFIASGSEDS-----------KVYIWHRISG----KLLAVLSGHS 482 (519)
T ss_pred eecchhhHHHHhhc-ccccceEEEeccCCCCcceEEecCCCc-----------eEEEEEccCC----ceeEeecCCc
Confidence 88888777665442 33344444433 3335666664433 7888888887 5555554433
No 173
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=34.67 E-value=77 Score=16.92 Aligned_cols=10 Identities=30% Similarity=0.285 Sum_probs=4.3
Q ss_pred eeEEEEeCCC
Q 021080 191 STVQVLDHMG 200 (317)
Q Consensus 191 ~~v~~yd~~~ 200 (317)
..+.++|..+
T Consensus 16 g~l~a~d~~~ 25 (33)
T smart00564 16 GTLYALDAKT 25 (33)
T ss_pred CEEEEEEccc
Confidence 3444444433
No 174
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=33.74 E-value=3.5e+02 Score=24.16 Aligned_cols=256 Identities=14% Similarity=0.123 Sum_probs=111.8
Q ss_pred CCCCcHHHHHHHhccCCCCchhhhhhcCHhHHHhhcChhhHH-----HHHhcCCcCceEEEE---------EeCCCCceE
Q 021080 5 IEGLPDAVALRCLARVPFFLHPKLELVSRSWRAAIRSPELFK-----ARQEVGSSENLLCVC---------AFDPENLWQ 70 (317)
Q Consensus 5 ~~~Lp~d~~~~~l~r~p~~~~~~~~~v~k~w~~l~~s~~~~~-----~~~~~~~~~~~l~v~---------gg~~~~~~~ 70 (317)
++.=|+|-| .+|++-|..... ..+.+|..-+..-++.. ++......++.|-++ .|.....+-
T Consensus 22 v~~pP~DsI-S~l~FSP~~~~~---~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k 97 (347)
T KOG0647|consen 22 VPNPPEDSI-SALAFSPQADNL---LAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAK 97 (347)
T ss_pred cCCCcccch-heeEeccccCce---EEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceE
Confidence 345566655 667777733322 23445554333222221 233333333333322 222346778
Q ss_pred EEeCCCCCEeecCCCCccccccCCeeEEEeCCEEEEEcCcCCCCC-CCCCCCC---CcccccceeEecccCC----CCCC
Q 021080 71 LYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVD-PLTGDQD---GSFATNEVWSYDPVTR----GFTS 142 (317)
Q Consensus 71 ~yd~~~~~W~~~~~~p~~~~~r~~~~~~~~~~~iyv~GG~~~~~~-~~~~~~~---~~~~~~~~~~~d~~~~----G~~~ 142 (317)
.+|..+++=.++. ++..+ .+.-+.+-...-.+++.|..+.... +.+.-.+ .......+|.-|.... +..
T Consensus 98 ~wDL~S~Q~~~v~-~Hd~p-vkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata- 174 (347)
T KOG0647|consen 98 LWDLASGQVSQVA-AHDAP-VKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATA- 174 (347)
T ss_pred EEEccCCCeeeee-ecccc-eeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEec-
Confidence 8999999877763 33221 1333333333445677777654211 0000000 0000111222221111 111
Q ss_pred CcCCCceeEEeeCCCCc--eeeCCCCCccCCCceEEEEECCEEEEEecCcee--EEEEeCC--CCcEEeccCCc---cCC
Q 021080 143 CRKSISQAEMYDPEKDV--WVPIPDLHRTHNSACTGVVIGGKVHVLHKGLST--VQVLDHM--GLGWTVEDYGW---LQG 213 (317)
Q Consensus 143 ~~~~~~~~~~yd~~t~~--W~~~~~~p~~~r~~~~~~~~~g~lyv~gG~~~~--v~~yd~~--~~~W~~~~~~~---~~~ 213 (317)
-+.+.+|+++... ...+.+.-.- ...+.++.-++..|.+|+.... ++..|.. ++.++-...-. ...
T Consensus 175 ----~r~i~vynL~n~~te~k~~~SpLk~-Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~ 249 (347)
T KOG0647|consen 175 ----ERHIAVYNLENPPTEFKRIESPLKW-QTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVND 249 (347)
T ss_pred ----CCcEEEEEcCCCcchhhhhcCcccc-eeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCC
Confidence 2577889887654 2223222222 3455677788889999984333 3334443 23332111000 000
Q ss_pred cEEE--------EcCeEEEEeC-cEEEEecCCceEEEeccccccccccEEEEEECCeEEEEe-CcccCC
Q 021080 214 PMAI--------VHDSVYLMSH-GLIIKQHRDVRKVVASASEFRRRIGFAMIGMGDDIYVIG-GVIGPD 272 (317)
Q Consensus 214 ~~~~--------~~~~ly~~g~-~~~~~yd~~~W~~v~~~~~~~~r~~~~~~~~~~~lyv~G-G~~~~~ 272 (317)
.+-. +.|.+-.+|+ +.+-.+|.+.-+++...+....-........+|.||+.. |++-..
T Consensus 250 ~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~gYDWSk 318 (347)
T KOG0647|consen 250 DVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYALGYDWSK 318 (347)
T ss_pred ceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEeeccccc
Confidence 0001 2344444554 445555666555544433211112222334468888774 665443
No 175
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=33.10 E-value=3.9e+02 Score=24.54 Aligned_cols=144 Identities=13% Similarity=0.043 Sum_probs=75.9
Q ss_pred CceEEEEEeCC-C-CceEEEeCCCC-----CEeecCCCCccccccCCeeEEEeCCEEEEEcCcCCCCCCCCCCCCCcccc
Q 021080 55 ENLLCVCAFDP-E-NLWQLYDPLRD-----LWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFAT 127 (317)
Q Consensus 55 ~~~l~v~gg~~-~-~~~~~yd~~~~-----~W~~~~~~p~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~ 127 (317)
+.++++..... . ++++..|.... .|..+.+--. -..+.+...++.+|+......
T Consensus 238 ~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~----~~~~~v~~~~~~~yi~Tn~~a--------------- 298 (414)
T PF02897_consen 238 GRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPRED----GVEYYVDHHGDRLYILTNDDA--------------- 298 (414)
T ss_dssp SSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSS----S-EEEEEEETTEEEEEE-TT----------------
T ss_pred ccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCC----ceEEEEEccCCEEEEeeCCCC---------------
Confidence 44555544433 4 68899998875 7777643111 122345556889998876322
Q ss_pred cceeEecccCCCCCCCcCCCceeEEeeCCCCc---ee-eCCCCCccCCCceEEEEECCEEEEEec--CceeEEEEeCC-C
Q 021080 128 NEVWSYDPVTRGFTSCRKSISQAEMYDPEKDV---WV-PIPDLHRTHNSACTGVVIGGKVHVLHK--GLSTVQVLDHM-G 200 (317)
Q Consensus 128 ~~~~~~d~~~~G~~~~~~~~~~~~~yd~~t~~---W~-~~~~~p~~~r~~~~~~~~~g~lyv~gG--~~~~v~~yd~~-~ 200 (317)
....+..++..+.. |. .+.+-... .........++.|++..- ....+..||+. +
T Consensus 299 ------------------~~~~l~~~~l~~~~~~~~~~~l~~~~~~-~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~ 359 (414)
T PF02897_consen 299 ------------------PNGRLVAVDLADPSPAEWWTVLIPEDED-VSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDG 359 (414)
T ss_dssp ------------------TT-EEEEEETTSTSGGGEEEEEE--SSS-EEEEEEEEETTEEEEEEEETTEEEEEEEETT-T
T ss_pred ------------------CCcEEEEecccccccccceeEEcCCCCc-eeEEEEEEECCEEEEEEEECCccEEEEEECCCC
Confidence 12445556655543 65 33332222 233345567888887754 56789999999 3
Q ss_pred CcEEeccCCccCCcEEEE-----cCeEEEE-eC----cEEEEecCCc
Q 021080 201 LGWTVEDYGWLQGPMAIV-----HDSVYLM-SH----GLIIKQHRDV 237 (317)
Q Consensus 201 ~~W~~~~~~~~~~~~~~~-----~~~ly~~-g~----~~~~~yd~~~ 237 (317)
..-..++.+ ....+... .+.+++. .+ ..++.||..+
T Consensus 360 ~~~~~~~~p-~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t 405 (414)
T PF02897_consen 360 KESREIPLP-EAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLAT 405 (414)
T ss_dssp EEEEEEESS-SSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTT
T ss_pred cEEeeecCC-cceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCC
Confidence 333333322 22222222 2233332 22 6788888665
No 176
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=33.02 E-value=3.8e+02 Score=24.34 Aligned_cols=57 Identities=9% Similarity=0.016 Sum_probs=33.5
Q ss_pred CceeEEEEeCCCCc------EEeccCCccCCcEEEEcCeEEEEeC------cEEEEecCCceEE-Eeccc
Q 021080 189 GLSTVQVLDHMGLG------WTVEDYGWLQGPMAIVHDSVYLMSH------GLIIKQHRDVRKV-VASAS 245 (317)
Q Consensus 189 ~~~~v~~yd~~~~~------W~~~~~~~~~~~~~~~~~~ly~~g~------~~~~~yd~~~W~~-v~~~~ 245 (317)
....|-.||+++.. |+.-+..+...-..-+++.++.+|- -.+..||...|++ +..+.
T Consensus 92 sDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~ 161 (376)
T KOG1188|consen 92 SDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLN 161 (376)
T ss_pred cCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhh
Confidence 34578889987664 5544411111111113667888874 3677888888887 55444
No 177
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=32.92 E-value=2.3e+02 Score=27.11 Aligned_cols=51 Identities=10% Similarity=0.018 Sum_probs=28.4
Q ss_pred ceeEEeeCCCCceeeCCCCCccCCCceEEEE-ECCEEEEEecCceeEEEEeCCCC
Q 021080 148 SQAEMYDPEKDVWVPIPDLHRTHNSACTGVV-IGGKVHVLHKGLSTVQVLDHMGL 201 (317)
Q Consensus 148 ~~~~~yd~~t~~W~~~~~~p~~~r~~~~~~~-~~g~lyv~gG~~~~v~~yd~~~~ 201 (317)
..+..||...++=...-.-..| ..++++ -+|.+.++|.....++.||....
T Consensus 231 kki~~yD~~s~~s~~~l~y~~P---lstvaf~~~G~~L~aG~s~G~~i~YD~R~~ 282 (673)
T KOG4378|consen 231 KKINIYDIRSQASTDRLTYSHP---LSTVAFSECGTYLCAGNSKGELIAYDMRST 282 (673)
T ss_pred ceEEEeecccccccceeeecCC---cceeeecCCceEEEeecCCceEEEEecccC
Confidence 6777888775543221111111 112333 35666677666778999998653
No 178
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=32.37 E-value=2.8e+02 Score=22.62 Aligned_cols=102 Identities=7% Similarity=-0.019 Sum_probs=55.9
Q ss_pred CCEEEEEec-CceeEEEEeCCCCcEEeccCCccCCcEE-EEcCeEEEEeC-----cEEEEecCCceEEEecccccccccc
Q 021080 180 GGKVHVLHK-GLSTVQVLDHMGLGWTVEDYGWLQGPMA-IVHDSVYLMSH-----GLIIKQHRDVRKVVASASEFRRRIG 252 (317)
Q Consensus 180 ~g~lyv~gG-~~~~v~~yd~~~~~W~~~~~~~~~~~~~-~~~~~ly~~g~-----~~~~~yd~~~W~~v~~~~~~~~r~~ 252 (317)
+.++.++-| ....+..||.....=..++..... .+. .-+|++.+++| +.+..||.++.+.+..... . .
T Consensus 71 g~~favi~g~~~~~v~lyd~~~~~i~~~~~~~~n-~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~--~--~ 145 (194)
T PF08662_consen 71 GNEFAVIYGSMPAKVTLYDVKGKKIFSFGTQPRN-TISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEH--S--D 145 (194)
T ss_pred CCEEEEEEccCCcccEEEcCcccEeEeecCCCce-EEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeecccc--C--c
Confidence 345666655 445788888864443334322110 111 12566666654 5689999998888776552 1 2
Q ss_pred EEEEEE--CCeEEEEeCcccCCCCceecccCcceeEeecCCC
Q 021080 253 FAMIGM--GDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAE 292 (317)
Q Consensus 253 ~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~ 292 (317)
...+.. +|+.++......+. ..-+.+.+|+...+
T Consensus 146 ~t~~~WsPdGr~~~ta~t~~r~------~~dng~~Iw~~~G~ 181 (194)
T PF08662_consen 146 ATDVEWSPDGRYLATATTSPRL------RVDNGFKIWSFQGR 181 (194)
T ss_pred EEEEEEcCCCCEEEEEEeccce------eccccEEEEEecCe
Confidence 233333 56666665543221 23356677777543
No 179
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=31.77 E-value=4.4e+02 Score=24.81 Aligned_cols=91 Identities=10% Similarity=-0.047 Sum_probs=53.0
Q ss_pred ceeEEeeCCCC-ce-eeCCCCCccCCCceEEEEECCEEEEEecCceeEEEEeCCCCcE-EeccCCccCCcEEEE--cCeE
Q 021080 148 SQAEMYDPEKD-VW-VPIPDLHRTHNSACTGVVIGGKVHVLHKGLSTVQVLDHMGLGW-TVEDYGWLQGPMAIV--HDSV 222 (317)
Q Consensus 148 ~~~~~yd~~t~-~W-~~~~~~p~~~r~~~~~~~~~g~lyv~gG~~~~v~~yd~~~~~W-~~~~~~~~~~~~~~~--~~~l 222 (317)
..+.+||.+.+ += +.+...... . .+.+..-++.+++.|+....|..+|..+.+= ..++........+.. ++.+
T Consensus 225 ~tiriwd~~~~~~~~~~l~gH~~~-v-~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~ 302 (456)
T KOG0266|consen 225 KTLRIWDLKDDGRNLKTLKGHSTY-V-TSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNL 302 (456)
T ss_pred ceEEEeeccCCCeEEEEecCCCCc-e-EEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCE
Confidence 57777887444 22 333444443 3 3334445678999988888899999998442 222211111222222 4555
Q ss_pred EEEeC--cEEEEecCCceEE
Q 021080 223 YLMSH--GLIIKQHRDVRKV 240 (317)
Q Consensus 223 y~~g~--~~~~~yd~~~W~~ 240 (317)
++.+. +.+..||..+++.
T Consensus 303 l~s~s~d~~i~vwd~~~~~~ 322 (456)
T KOG0266|consen 303 LVSASYDGTIRVWDLETGSK 322 (456)
T ss_pred EEEcCCCccEEEEECCCCce
Confidence 55554 6889999999883
No 180
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=31.31 E-value=5.7e+02 Score=25.95 Aligned_cols=20 Identities=25% Similarity=0.451 Sum_probs=14.7
Q ss_pred cCCeeEEEeC--CEEEEEcCcC
Q 021080 92 LAHFGVVSTA--GKLFVLGGGS 111 (317)
Q Consensus 92 r~~~~~~~~~--~~iyv~GG~~ 111 (317)
+..++.++++ |.|.++|+.+
T Consensus 435 p~QfscvavD~sGelV~AG~~d 456 (893)
T KOG0291|consen 435 PIQFSCVAVDPSGELVCAGAQD 456 (893)
T ss_pred ceeeeEEEEcCCCCEEEeeccc
Confidence 5567777776 8888888764
No 181
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=30.92 E-value=4e+02 Score=23.99 Aligned_cols=90 Identities=14% Similarity=0.145 Sum_probs=49.7
Q ss_pred CceeEEeeCCCCc-eeeCCCCCccCCCceEEEE---ECCEEEEEecCceeEEEEeC-CCCcEEeccCCccCCcEEE-E--
Q 021080 147 ISQAEMYDPEKDV-WVPIPDLHRTHNSACTGVV---IGGKVHVLHKGLSTVQVLDH-MGLGWTVEDYGWLQGPMAI-V-- 218 (317)
Q Consensus 147 ~~~~~~yd~~t~~-W~~~~~~p~~~r~~~~~~~---~~g~lyv~gG~~~~v~~yd~-~~~~W~~~~~~~~~~~~~~-~-- 218 (317)
.+++++|....++ |+..--+..- -..-.++- .-++| +.++...+-+++.+ ...+|.....+.....++. +
T Consensus 31 ~~evhiy~~~~~~~w~~~htls~H-d~~vtgvdWap~snrI-vtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~W 108 (361)
T KOG1523|consen 31 NHEVHIYSMLGADLWEPAHTLSEH-DKIVTGVDWAPKSNRI-VTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKW 108 (361)
T ss_pred CceEEEEEecCCCCceeceehhhh-CcceeEEeecCCCCce-eEccCCCCccccccCCCCeeccceeEEEeccceeeEee
Confidence 3689999999988 9987655432 11111221 12233 33333455666666 6667876654444222222 2
Q ss_pred --cCeEEEEeC----cEEEEecCCc-e
Q 021080 219 --HDSVYLMSH----GLIIKQHRDV-R 238 (317)
Q Consensus 219 --~~~ly~~g~----~~~~~yd~~~-W 238 (317)
++..|.+|+ -.++.|+-|. |
T Consensus 109 sP~enkFAVgSgar~isVcy~E~ENdW 135 (361)
T KOG1523|consen 109 SPKENKFAVGSGARLISVCYYEQENDW 135 (361)
T ss_pred cCcCceEEeccCccEEEEEEEecccce
Confidence 445566654 2577888777 6
No 182
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=30.90 E-value=4e+02 Score=24.01 Aligned_cols=76 Identities=11% Similarity=-0.010 Sum_probs=48.8
Q ss_pred CCcEEEEcCeEEEEeC--cEEEEecCCc--eEEEeccccccccccEEEEEECCeEEEEeCcccCCCCceecc--------
Q 021080 212 QGPMAIVHDSVYLMSH--GLIIKQHRDV--RKVVASASEFRRRIGFAMIGMGDDIYVIGGVIGPDRWNWDIK-------- 279 (317)
Q Consensus 212 ~~~~~~~~~~ly~~g~--~~~~~yd~~~--W~~v~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~-------- 279 (317)
+++---.+|+||+.+. +.+..+|+++ .+.+...|. .. .++..+ |.+.++|-...++.....+-
T Consensus 205 PhSPRWhdgrLwvldsgtGev~~vD~~~G~~e~Va~vpG-~~---rGL~f~-G~llvVgmSk~R~~~~f~glpl~~~l~~ 279 (335)
T TIGR03032 205 PHSPRWYQGKLWLLNSGRGELGYVDPQAGKFQPVAFLPG-FT---RGLAFA-GDFAFVGLSKLRESRVFGGLPIEERLDA 279 (335)
T ss_pred CcCCcEeCCeEEEEECCCCEEEEEcCCCCcEEEEEECCC-CC---ccccee-CCEEEEEeccccCCCCcCCCchhhhhhh
Confidence 4455567899999975 7999999874 899888884 22 233444 66666676655532221111
Q ss_pred cCcceeEeecCCC
Q 021080 280 PMSDVDVLTVGAE 292 (317)
Q Consensus 280 ~~~~v~~yd~~~~ 292 (317)
..-.+++-|+.++
T Consensus 280 ~~CGv~vidl~tG 292 (335)
T TIGR03032 280 LGCGVAVIDLNSG 292 (335)
T ss_pred hcccEEEEECCCC
Confidence 1235788888888
No 183
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=30.37 E-value=2.1e+02 Score=27.14 Aligned_cols=78 Identities=14% Similarity=0.104 Sum_probs=49.5
Q ss_pred CCceeeCCCCCccCCCceEEEEECCEEEEEec--CceeEEEEeCCCCcEEeccCCcc-CCcEEEEcCeEEEE-eCcEEEE
Q 021080 157 KDVWVPIPDLHRTHNSACTGVVIGGKVHVLHK--GLSTVQVLDHMGLGWTVEDYGWL-QGPMAIVHDSVYLM-SHGLIIK 232 (317)
Q Consensus 157 t~~W~~~~~~p~~~r~~~~~~~~~g~lyv~gG--~~~~v~~yd~~~~~W~~~~~~~~-~~~~~~~~~~ly~~-g~~~~~~ 232 (317)
..+.+++-+|+.. . .+-+.+++++|++.. ...++++-|+..+.-+.-.+... .+.-+-.+|+-.++ -++++|.
T Consensus 215 g~tFeK~vdl~~~-v--S~PmIV~~RvYFlsD~eG~GnlYSvdldGkDlrrHTnFtdYY~R~~nsDGkrIvFq~~GdIyl 291 (668)
T COG4946 215 GKTFEKFVDLDGN-V--SSPMIVGERVYFLSDHEGVGNLYSVDLDGKDLRRHTNFTDYYPRNANSDGKRIVFQNAGDIYL 291 (668)
T ss_pred CcceeeeeecCCC-c--CCceEEcceEEEEecccCccceEEeccCCchhhhcCCchhccccccCCCCcEEEEecCCcEEE
Confidence 3356666666654 2 245688999999986 45678888888777665554433 12222334544444 4688888
Q ss_pred ecCCc
Q 021080 233 QHRDV 237 (317)
Q Consensus 233 yd~~~ 237 (317)
|||++
T Consensus 292 ydP~t 296 (668)
T COG4946 292 YDPET 296 (668)
T ss_pred eCCCc
Confidence 88876
No 184
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=30.33 E-value=3.6e+02 Score=23.26 Aligned_cols=51 Identities=14% Similarity=0.104 Sum_probs=37.6
Q ss_pred EEEEEeCCCCceEEEeCCCCCEeecCCCCccccccCCeeEEEeCCEEEEEcCcC
Q 021080 58 LCVCAFDPENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGS 111 (317)
Q Consensus 58 l~v~gg~~~~~~~~yd~~~~~W~~~~~~p~~~~~r~~~~~~~~~~~iyv~GG~~ 111 (317)
=.++.|.....+.++|.++++-..+.-+... +.+.+.+.+.++.+|.|..+
T Consensus 114 SVv~SgsfD~s~r~wDCRS~s~ePiQildea---~D~V~Si~v~~heIvaGS~D 164 (307)
T KOG0316|consen 114 SVVASGSFDSSVRLWDCRSRSFEPIQILDEA---KDGVSSIDVAEHEIVAGSVD 164 (307)
T ss_pred eEEEeccccceeEEEEcccCCCCccchhhhh---cCceeEEEecccEEEeeccC
Confidence 3344444557888999998888877666654 77788888888888888754
No 185
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=29.50 E-value=4.7e+02 Score=24.34 Aligned_cols=108 Identities=13% Similarity=0.141 Sum_probs=54.0
Q ss_pred CCceeeCCCCCccCCCceEEEEECCEEEEEecCceeEEEEeCCCC-----cEEeccCCccC---CcEE-EEcCeEEEEeC
Q 021080 157 KDVWVPIPDLHRTHNSACTGVVIGGKVHVLHKGLSTVQVLDHMGL-----GWTVEDYGWLQ---GPMA-IVHDSVYLMSH 227 (317)
Q Consensus 157 t~~W~~~~~~p~~~r~~~~~~~~~g~lyv~gG~~~~v~~yd~~~~-----~W~~~~~~~~~---~~~~-~~~~~ly~~g~ 227 (317)
...|+.+...... +....+...++.++++|..-. +..-+.... +|..++..... ..+. .-++.++++|.
T Consensus 269 ~~~W~~~~~~~~~-~l~~v~~~~dg~l~l~g~~G~-l~~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~ 346 (398)
T PLN00033 269 QPYWQPHNRASAR-RIQNMGWRADGGLWLLTRGGG-LYVSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGG 346 (398)
T ss_pred CcceEEecCCCcc-ceeeeeEcCCCCEEEEeCCce-EEEecCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEEC
Confidence 3348877544433 333333456888998876322 333333333 45555432111 1122 22678999987
Q ss_pred c-EEEE-ecCCc-eEEEeccccccccccEEEEE-ECCeEEEEeC
Q 021080 228 G-LIIK-QHRDV-RKVVASASEFRRRIGFAMIG-MGDDIYVIGG 267 (317)
Q Consensus 228 ~-~~~~-yd~~~-W~~v~~~~~~~~r~~~~~~~-~~~~lyv~GG 267 (317)
+ .++. -|..+ |+.+..... ..---+.+.. -+++.|+.|-
T Consensus 347 ~G~v~~s~D~G~tW~~~~~~~~-~~~~ly~v~f~~~~~g~~~G~ 389 (398)
T PLN00033 347 SGILLRSTDGGKSWKRDKGADN-IAANLYSVKFFDDKKGFVLGN 389 (398)
T ss_pred CCcEEEeCCCCcceeEccccCC-CCcceeEEEEcCCCceEEEeC
Confidence 4 3333 34444 999763221 1111123443 3578888873
No 186
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=29.10 E-value=1.2e+02 Score=23.41 Aligned_cols=20 Identities=5% Similarity=0.037 Sum_probs=13.3
Q ss_pred EEEEEecCceeEEEEeCCCCc
Q 021080 182 KVHVLHKGLSTVQVLDHMGLG 202 (317)
Q Consensus 182 ~lyv~gG~~~~v~~yd~~~~~ 202 (317)
.+.++|- .+.+.+||...+.
T Consensus 65 D~LliGt-~t~llaYDV~~N~ 84 (136)
T PF14781_consen 65 DCLLIGT-QTSLLAYDVENNS 84 (136)
T ss_pred CEEEEec-cceEEEEEcccCc
Confidence 3555544 6678888887765
No 187
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=28.99 E-value=4.2e+02 Score=23.65 Aligned_cols=114 Identities=16% Similarity=0.172 Sum_probs=67.7
Q ss_pred CceEEEEEeCCCCceEEEeCCCCCEe-ecCCCCccccccCCeeEEEeCC-EEEEEcCcCCCCCCCCCCCCCcccccceeE
Q 021080 55 ENLLCVCAFDPENLWQLYDPLRDLWI-TLPVLPSKIRHLAHFGVVSTAG-KLFVLGGGSDAVDPLTGDQDGSFATNEVWS 132 (317)
Q Consensus 55 ~~~l~v~gg~~~~~~~~yd~~~~~W~-~~~~~p~~~~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~ 132 (317)
...+.+|+.-+-.....+|+.+++=. .+.+-+.. +-++|.+..-++ .+|..-+..+.
T Consensus 16 ~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gR--HFyGHg~fs~dG~~LytTEnd~~~------------------- 74 (305)
T PF07433_consen 16 RPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGR--HFYGHGVFSPDGRLLYTTENDYET------------------- 74 (305)
T ss_pred CCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCC--EEecCEEEcCCCCEEEEeccccCC-------------------
Confidence 66788888888888899999988754 33333322 246777776655 56665543211
Q ss_pred ecccCCCCCCCcCCCceeEEeeCCCCceeeCCCCCccCCCceEEEEE-CC-EEEEEe-c----------------CceeE
Q 021080 133 YDPVTRGFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHNSACTGVVI-GG-KVHVLH-K----------------GLSTV 193 (317)
Q Consensus 133 ~d~~~~G~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~r~~~~~~~~-~g-~lyv~g-G----------------~~~~v 193 (317)
..--+-+||.. ++.+++..++.....-|..... || .|.|.- | ...++
T Consensus 75 -------------g~G~IgVyd~~-~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL 140 (305)
T PF07433_consen 75 -------------GRGVIGVYDAA-RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSL 140 (305)
T ss_pred -------------CcEEEEEEECc-CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCce
Confidence 12456678877 6777776666542444544443 44 344433 3 12356
Q ss_pred EEEeCCCCcE
Q 021080 194 QVLDHMGLGW 203 (317)
Q Consensus 194 ~~yd~~~~~W 203 (317)
...|..+++-
T Consensus 141 ~~ld~~sG~l 150 (305)
T PF07433_consen 141 VYLDARSGAL 150 (305)
T ss_pred EEEecCCCce
Confidence 6677777763
No 188
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=28.80 E-value=4.7e+02 Score=26.24 Aligned_cols=24 Identities=17% Similarity=0.102 Sum_probs=19.5
Q ss_pred EEECCEEEEEecCceeEEEEeCCC
Q 021080 177 VVIGGKVHVLHKGLSTVQVLDHMG 200 (317)
Q Consensus 177 ~~~~g~lyv~gG~~~~v~~yd~~~ 200 (317)
...+|.+.+.||..++|..+|..+
T Consensus 627 FS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 627 FSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred EecCCCEEEecCCCCeEEEEEchh
Confidence 356999999999778888888754
No 189
>COG3940 Predicted beta-xylosidase [General function prediction only]
Probab=28.79 E-value=3.5e+02 Score=22.73 Aligned_cols=107 Identities=12% Similarity=0.053 Sum_probs=56.9
Q ss_pred ceeeC--CCCCccCCCceEEEEECCEEEEEec-----------Cce-----eEEEEeCCCCcEEeccCCcc-------CC
Q 021080 159 VWVPI--PDLHRTHNSACTGVVIGGKVHVLHK-----------GLS-----TVQVLDHMGLGWTVEDYGWL-------QG 213 (317)
Q Consensus 159 ~W~~~--~~~p~~~r~~~~~~~~~g~lyv~gG-----------~~~-----~v~~yd~~~~~W~~~~~~~~-------~~ 213 (317)
.|++- ++|..- ......-.++|+-|+.-- ... ..+.-||.++.|.+...... ..
T Consensus 57 vwrk~esgpms~l-iwapeih~ingkwyiyfaaa~ta~~k~g~f~hrmfvlene~anpltg~w~ekgqikt~wesfslda 135 (324)
T COG3940 57 VWRKHESGPMSNL-IWAPEIHFINGKWYIYFAAAPTANIKDGTFNHRMFVLENENANPLTGNWVEKGQIKTAWESFSLDA 135 (324)
T ss_pred EEeccCCCchhhc-ccccceeEEcceEEEEEeecCcccccccccceeEEEEecCCCCCCcccceecceeccchhcceeee
Confidence 47654 456555 555566678887666432 011 12234778889987664433 22
Q ss_pred cEEEEcCeEEEEeC---------cEEEEecCCc-eEEEecc-----ccc-------cccccEEEEEECCeEEEEe
Q 021080 214 PMAIVHDSVYLMSH---------GLIIKQHRDV-RKVVASA-----SEF-------RRRIGFAMIGMGDDIYVIG 266 (317)
Q Consensus 214 ~~~~~~~~ly~~g~---------~~~~~yd~~~-W~~v~~~-----~~~-------~~r~~~~~~~~~~~lyv~G 266 (317)
.....++++|.+.. +.++.-+.+. |..-+.. |+. -...+.+++..+|+||+.=
T Consensus 136 ttfeh~gk~yyvwaqkdp~i~gnsniyiaemenpwtikgepvmlskpe~dwe~~gfwvnegpav~k~ngkifi~y 210 (324)
T COG3940 136 TTFEHNGKLYYVWAQKDPNIKGNSNIYIAEMENPWTIKGEPVMLSKPELDWEIKGFWVNEGPAVLKKNGKIFITY 210 (324)
T ss_pred eeeeeCCEEEEEEeccCCCccCCcceEEEeccCCceecCceEEecCCCcccEEEEEEecCCceEEEECCEEEEEE
Confidence 33344778887753 3455444444 5432210 100 1123456677788888753
No 190
>PRK02888 nitrous-oxide reductase; Validated
Probab=28.76 E-value=5.9e+02 Score=25.32 Aligned_cols=60 Identities=8% Similarity=-0.012 Sum_probs=39.2
Q ss_pred cCeEEEEeCcEEEEecCCc-----eEEEeccccccccccEEEEE--ECCeEEEEeCcccCCCCceecccCcceeEeecCC
Q 021080 219 HDSVYLMSHGLIIKQHRDV-----RKVVASASEFRRRIGFAMIG--MGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGA 291 (317)
Q Consensus 219 ~~~ly~~g~~~~~~yd~~~-----W~~v~~~~~~~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~ 291 (317)
+|+.-.++++.+...|..+ +..+..+|. ++.-|++.. -+.++|+.|+. .+++-++|+++
T Consensus 287 dGK~~~V~gn~V~VID~~t~~~~~~~v~~yIPV--GKsPHGV~vSPDGkylyVankl------------S~tVSVIDv~k 352 (635)
T PRK02888 287 AGKFKTIGGSKVPVVDGRKAANAGSALTRYVPV--PKNPHGVNTSPDGKYFIANGKL------------SPTVTVIDVRK 352 (635)
T ss_pred CCCEEEECCCEEEEEECCccccCCcceEEEEEC--CCCccceEECCCCCEEEEeCCC------------CCcEEEEEChh
Confidence 4443334678888999877 888888884 444455443 35567776663 34677888876
Q ss_pred C
Q 021080 292 E 292 (317)
Q Consensus 292 ~ 292 (317)
.
T Consensus 353 ~ 353 (635)
T PRK02888 353 L 353 (635)
T ss_pred h
Confidence 4
No 191
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=28.61 E-value=6.2e+02 Score=25.47 Aligned_cols=72 Identities=14% Similarity=0.068 Sum_probs=38.3
Q ss_pred cceeEecccCC-CCCCCcCCCceeEEeeCCCCceeeCCCCCccCCCceEEEEECCEEEEEecCceeEEEEeCCCCc
Q 021080 128 NEVWSYDPVTR-GFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHNSACTGVVIGGKVHVLHKGLSTVQVLDHMGLG 202 (317)
Q Consensus 128 ~~~~~~d~~~~-G~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~r~~~~~~~~~g~lyv~gG~~~~v~~yd~~~~~ 202 (317)
-++..|-|..+ +-+ +..-..+..+|..++.=.++=.=+.. .-.+-+...+|+..+.|+....|..||+.+..
T Consensus 538 V~cv~FHPNs~Y~aT--GSsD~tVRlWDv~~G~~VRiF~GH~~-~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~ 610 (707)
T KOG0263|consen 538 VDCVSFHPNSNYVAT--GSSDRTVRLWDVSTGNSVRIFTGHKG-PVTALAFSPCGRYLASGDEDGLIKIWDLANGS 610 (707)
T ss_pred cceEEECCccccccc--CCCCceEEEEEcCCCcEEEEecCCCC-ceEEEEEcCCCceEeecccCCcEEEEEcCCCc
Confidence 34455666554 110 12235677777777654433111222 22222233466666666667789999988754
No 192
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=28.51 E-value=5.5e+02 Score=24.82 Aligned_cols=60 Identities=8% Similarity=-0.117 Sum_probs=35.2
Q ss_pred EECCEEEEEecCceeEEEEeCCCCcEEeccCCcc---CCcEEEE--cCeEEEEeC--cEEEEecCCc
Q 021080 178 VIGGKVHVLHKGLSTVQVLDHMGLGWTVEDYGWL---QGPMAIV--HDSVYLMSH--GLIIKQHRDV 237 (317)
Q Consensus 178 ~~~g~lyv~gG~~~~v~~yd~~~~~W~~~~~~~~---~~~~~~~--~~~ly~~g~--~~~~~yd~~~ 237 (317)
.-++...++||....+..|.+..+.-.+...... ....+.+ ++.+++.+. +.+..||.+.
T Consensus 452 ~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s 518 (603)
T KOG0318|consen 452 SPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVAS 518 (603)
T ss_pred cCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEccc
Confidence 3466777888866679999887765433322211 1222222 455555554 6788888765
No 193
>PTZ00420 coronin; Provisional
Probab=27.89 E-value=5.9e+02 Score=25.01 Aligned_cols=101 Identities=8% Similarity=-0.079 Sum_probs=51.2
Q ss_pred EEEEEecCceeEEEEeCCCCc-EEeccCCccCCcEEE--EcCeEEEEeC--cEEEEecCCceEEEeccccccccccEEEE
Q 021080 182 KVHVLHKGLSTVQVLDHMGLG-WTVEDYGWLQGPMAI--VHDSVYLMSH--GLIIKQHRDVRKVVASASEFRRRIGFAMI 256 (317)
Q Consensus 182 ~lyv~gG~~~~v~~yd~~~~~-W~~~~~~~~~~~~~~--~~~~ly~~g~--~~~~~yd~~~W~~v~~~~~~~~r~~~~~~ 256 (317)
.+.+.++....+..||+.+.+ -..+... .....+. .+|.+++.++ +.+..||+.+.+.+..+..-........+
T Consensus 139 ~iLaSgS~DgtIrIWDl~tg~~~~~i~~~-~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v 217 (568)
T PTZ00420 139 YIMCSSGFDSFVNIWDIENEKRAFQINMP-KKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNI 217 (568)
T ss_pred eEEEEEeCCCeEEEEECCCCcEEEEEecC-CcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEE
Confidence 345566656678889988765 1112111 1111111 2566666653 67999999876655444310111111111
Q ss_pred E-----ECCeEEEEeCcccCCCCceecccCcceeEeecCC
Q 021080 257 G-----MGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGA 291 (317)
Q Consensus 257 ~-----~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~ 291 (317)
. .++..++.+|.++.. ...|.+||+..
T Consensus 218 ~~~~fs~d~~~IlTtG~d~~~--------~R~VkLWDlr~ 249 (568)
T PTZ00420 218 WIDGLGGDDNYILSTGFSKNN--------MREMKLWDLKN 249 (568)
T ss_pred EeeeEcCCCCEEEEEEcCCCC--------ccEEEEEECCC
Confidence 1 244566666665432 12577777764
No 194
>PF06058 DCP1: Dcp1-like decapping family; InterPro: IPR010334 An essential step in mRNA turnover is decapping. In yeast, two proteins have been identified that are essential for decapping, Dcp1 (this family) and Dcp2 (IPR007722 from INTERPRO). The precise role of these proteins in the decapping reaction has not been established. Evidence suggests that the Dcp1 may enhance the function of Dcp2 [].; PDB: 1Q67_A 2QKM_C 2QKL_A.
Probab=27.78 E-value=82 Score=23.81 Aligned_cols=26 Identities=19% Similarity=0.456 Sum_probs=20.7
Q ss_pred eeEEEEeCCCCcEEeccCCccCCcEEEEcCeEEEEe
Q 021080 191 STVQVLDHMGLGWTVEDYGWLQGPMAIVHDSVYLMS 226 (317)
Q Consensus 191 ~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~ly~~g 226 (317)
-.++.||..+++|.+.. +.|.+|++.
T Consensus 29 v~vY~f~~~~~~W~K~~----------iEG~LFv~~ 54 (122)
T PF06058_consen 29 VVVYKFDHETNEWEKTD----------IEGTLFVYK 54 (122)
T ss_dssp EEEEEEETTTTEEEEEE----------EEEEEEEEE
T ss_pred EEEEeecCCCCcEeecC----------cEeeEEEEE
Confidence 35888999999999885 577777774
No 195
>PRK04043 tolB translocation protein TolB; Provisional
Probab=27.78 E-value=5.1e+02 Score=24.20 Aligned_cols=21 Identities=19% Similarity=0.207 Sum_probs=14.9
Q ss_pred CCceEEEeCCCCCEeecCCCC
Q 021080 66 ENLWQLYDPLRDLWITLPVLP 86 (317)
Q Consensus 66 ~~~~~~yd~~~~~W~~~~~~p 86 (317)
..+++.+|...+.+..++..+
T Consensus 256 ~~~Iy~~dl~~g~~~~LT~~~ 276 (419)
T PRK04043 256 QPDIYLYDTNTKTLTQITNYP 276 (419)
T ss_pred CcEEEEEECCCCcEEEcccCC
Confidence 457788887777777776544
No 196
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=27.57 E-value=4.6e+02 Score=23.59 Aligned_cols=99 Identities=21% Similarity=0.259 Sum_probs=54.6
Q ss_pred CCceEEEeCCCCCEeecCCCCccccccCCeeEEEe--CCEEEEEcCcCCCCCCCCCCCCCcccccceeEecccCCCCCCC
Q 021080 66 ENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVST--AGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRGFTSC 143 (317)
Q Consensus 66 ~~~~~~yd~~~~~W~~~~~~p~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~G~~~~ 143 (317)
.+-+..||..+-+..--.. |.. ......+.+-+ .+++||.|..++.
T Consensus 237 Hp~~rlYdv~T~Qcfvsan-Pd~-qht~ai~~V~Ys~t~~lYvTaSkDG~------------------------------ 284 (430)
T KOG0640|consen 237 HPTLRLYDVNTYQCFVSAN-PDD-QHTGAITQVRYSSTGSLYVTASKDGA------------------------------ 284 (430)
T ss_pred CCceeEEeccceeEeeecC-ccc-ccccceeEEEecCCccEEEEeccCCc------------------------------
Confidence 4677899999877665433 432 01222223333 4789999987542
Q ss_pred cCCCceeEEeeCCCCcee-eCCCCCccCCCceEEEEE-CCEEEEEecCceeEEEEeCCCCcE
Q 021080 144 RKSISQAEMYDPEKDVWV-PIPDLHRTHNSACTGVVI-GGKVHVLHKGLSTVQVLDHMGLGW 203 (317)
Q Consensus 144 ~~~~~~~~~yd~~t~~W~-~~~~~p~~~r~~~~~~~~-~g~lyv~gG~~~~v~~yd~~~~~W 203 (317)
+-.||-.+++.. .+..-+.+ ..-+++++- |+|..+..|....+.-+.+.+++-
T Consensus 285 ------IklwDGVS~rCv~t~~~AH~g-sevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~ 339 (430)
T KOG0640|consen 285 ------IKLWDGVSNRCVRTIGNAHGG-SEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRM 339 (430)
T ss_pred ------EEeeccccHHHHHHHHhhcCC-ceeeeEEEccCCeEEeecCCcceeeeeeecCCce
Confidence 334555555542 23444444 445555554 556656666444555566666553
No 197
>PRK10115 protease 2; Provisional
Probab=27.40 E-value=6.5e+02 Score=25.33 Aligned_cols=93 Identities=9% Similarity=-0.019 Sum_probs=50.8
Q ss_pred eEEeeCC-CCceeeCCCCCccCCCceEEEEECCEEEEEec--CceeEEEEeCCCCcEEecc-CCccCCcEEEE-----cC
Q 021080 150 AEMYDPE-KDVWVPIPDLHRTHNSACTGVVIGGKVHVLHK--GLSTVQVLDHMGLGWTVED-YGWLQGPMAIV-----HD 220 (317)
Q Consensus 150 ~~~yd~~-t~~W~~~~~~p~~~r~~~~~~~~~g~lyv~gG--~~~~v~~yd~~~~~W~~~~-~~~~~~~~~~~-----~~ 220 (317)
+...+.. +.+|+.+-+.... ..-......++.|++..- ....+..+|+.++....+. ..+........ ++
T Consensus 295 l~~~~~~~~~~~~~l~~~~~~-~~i~~~~~~~~~l~~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 373 (686)
T PRK10115 295 LYRTRVRDEQQWEELIPPREN-IMLEGFTLFTDWLVVEERQRGLTSLRQINRKTREVIGIAFDDPAYVTWIAYNPEPETS 373 (686)
T ss_pred EEEecCCCcccCeEEECCCCC-CEEEEEEEECCEEEEEEEeCCEEEEEEEcCCCCceEEecCCCCceEeeecccCCCCCc
Confidence 4445554 4689887554322 233344456777777764 4667888988766665554 21111111111 13
Q ss_pred eEEEE-eC----cEEEEecCCc--eEEEec
Q 021080 221 SVYLM-SH----GLIIKQHRDV--RKVVAS 243 (317)
Q Consensus 221 ~ly~~-g~----~~~~~yd~~~--W~~v~~ 243 (317)
.+++. .. ..++.||.++ |+.+..
T Consensus 374 ~~~~~~ss~~~P~~~y~~d~~~~~~~~l~~ 403 (686)
T PRK10115 374 RLRYGYSSMTTPDTLFELDMDTGERRVLKQ 403 (686)
T ss_pred eEEEEEecCCCCCEEEEEECCCCcEEEEEe
Confidence 44433 22 6899998765 766653
No 198
>smart00120 HX Hemopexin-like repeats. Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs).
Probab=26.91 E-value=94 Score=18.08 Aligned_cols=19 Identities=5% Similarity=0.092 Sum_probs=15.6
Q ss_pred cCeEEEEeCcEEEEecCCc
Q 021080 219 HDSVYLMSHGLIIKQHRDV 237 (317)
Q Consensus 219 ~~~ly~~g~~~~~~yd~~~ 237 (317)
++++|++.|+..+.|+..+
T Consensus 9 ~~~~yfFkg~~yw~~~~~~ 27 (45)
T smart00120 9 NGKTYFFKGDKYWRFDPKR 27 (45)
T ss_pred CCeEEEEeCCEEEEEcCCc
Confidence 5589999999999998654
No 199
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=26.54 E-value=4.4e+02 Score=23.07 Aligned_cols=56 Identities=16% Similarity=0.366 Sum_probs=32.0
Q ss_pred CceEEEEEe-C----CCCceEEEeCCCCCEeecCCCCccccccCCeeEEEeCCEEEEEcCcCC
Q 021080 55 ENLLCVCAF-D----PENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSD 112 (317)
Q Consensus 55 ~~~l~v~gg-~----~~~~~~~yd~~~~~W~~~~~~p~~~~~r~~~~~~~~~~~iyv~GG~~~ 112 (317)
++.||+.-. . +-+.+..-+..-..|..+ .+|... +....-.+.+++.||+||....
T Consensus 200 ~g~LyLtTRgt~~~~~GS~L~rs~d~G~~w~sl-rfp~nv-HhtnlPFakvgD~l~mFgsERA 260 (367)
T PF12217_consen 200 DGVLYLTTRGTLPTNPGSSLHRSDDNGQNWSSL-RFPNNV-HHTNLPFAKVGDVLYMFGSERA 260 (367)
T ss_dssp TTEEEEEEEES-TTS---EEEEESSTTSS-EEE-E-TT----SS---EEEETTEEEEEEE-SS
T ss_pred CCEEEEEEcCcCCCCCcceeeeecccCCchhhc-cccccc-cccCCCceeeCCEEEEEecccc
Confidence 567777643 1 235666777778889887 444431 2444557889999999997654
No 200
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=25.84 E-value=30 Score=20.51 Aligned_cols=17 Identities=18% Similarity=0.309 Sum_probs=14.4
Q ss_pred CcCCCCcHHHHHHHhcc
Q 021080 3 ELIEGLPDAVALRCLAR 19 (317)
Q Consensus 3 ~~~~~Lp~d~~~~~l~r 19 (317)
++||.++++.|..||..
T Consensus 11 ~mFP~l~~~~I~~~L~~ 27 (43)
T smart00546 11 DMFPNLDEEVIKAVLEA 27 (43)
T ss_pred HHCCCCCHHHHHHHHHH
Confidence 57899999999988874
No 201
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=25.56 E-value=4.5e+02 Score=22.87 Aligned_cols=120 Identities=13% Similarity=0.137 Sum_probs=58.2
Q ss_pred CceeEEeeCCCCceeeCCCCCccCCCceEEEEECCEEEEEecCceeEEEEeCCCCcEEeccCCccCCcEEEE--cCeEEE
Q 021080 147 ISQAEMYDPEKDVWVPIPDLHRTHNSACTGVVIGGKVHVLHKGLSTVQVLDHMGLGWTVEDYGWLQGPMAIV--HDSVYL 224 (317)
Q Consensus 147 ~~~~~~yd~~t~~W~~~~~~p~~~r~~~~~~~~~g~lyv~gG~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~--~~~ly~ 224 (317)
..++..+|..|.+=.+--.++.+ ... .-+..+|.|..+.- ...|-.+|+.+=.--+--.+|.....|.+ +..+|+
T Consensus 164 d~tVRLWD~rTgt~v~sL~~~s~-VtS-lEvs~dG~ilTia~-gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fV 240 (334)
T KOG0278|consen 164 DKTVRLWDHRTGTEVQSLEFNSP-VTS-LEVSQDGRILTIAY-GSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFV 240 (334)
T ss_pred CCceEEEEeccCcEEEEEecCCC-Ccc-eeeccCCCEEEEec-CceeEEeccccccceeeccCccccccccccCCCceEE
Confidence 35666777777764433223333 211 22345666555532 23355555443222222223222222222 457899
Q ss_pred EeCc--EEEEecCCceEEEeccccccccccEEE-E--EECCeEEEEeCcccC
Q 021080 225 MSHG--LIIKQHRDVRKVVASASEFRRRIGFAM-I--GMGDDIYVIGGVIGP 271 (317)
Q Consensus 225 ~g~~--~~~~yd~~~W~~v~~~~~~~~r~~~~~-~--~~~~~lyv~GG~~~~ 271 (317)
.||. .+++||-.+=.++.... ....+... + +-+|.+|..|-.++.
T Consensus 241 aGged~~~~kfDy~TgeEi~~~n--kgh~gpVhcVrFSPdGE~yAsGSEDGT 290 (334)
T KOG0278|consen 241 AGGEDFKVYKFDYNTGEEIGSYN--KGHFGPVHCVRFSPDGELYASGSEDGT 290 (334)
T ss_pred ecCcceEEEEEeccCCceeeecc--cCCCCceEEEEECCCCceeeccCCCce
Confidence 9985 45567766644444432 12222222 2 237899998875543
No 202
>COG4447 Uncharacterized protein related to plant photosystem II stability/assembly factor [General function prediction only]
Probab=24.90 E-value=4.8e+02 Score=23.11 Aligned_cols=113 Identities=12% Similarity=0.174 Sum_probs=63.2
Q ss_pred cCCeeEEEeCCEEEEEcCcCCCCCCCCCCCCCcccccceeEecccCCCCCCCcCCCceeEEeeCCCCceeeCCCCCccCC
Q 021080 92 LAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRGFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHN 171 (317)
Q Consensus 92 r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~G~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~r 171 (317)
....+.+..+++.+++|+... +..-|-.-++|.+.-..--. .
T Consensus 45 ~l~ia~~~~g~~gwlVg~rgt-------------------------------------iletdd~g~tw~qal~~~gr-~ 86 (339)
T COG4447 45 TLDIAFTESGSHGWLVGGRGT-------------------------------------ILETDDGGITWAQALDFLGR-H 86 (339)
T ss_pred ccceeEeecCcceEEEcCcce-------------------------------------EEEecCCcccchhhhchhhh-h
Confidence 445566777889999998531 22233446688876443222 3
Q ss_pred CceEEEEECCEEEEEecCceeEEEEeCCCCcEEeccCCcc----CCcEEEEcC-eEEEEeC-cEEEEe-cCCc-eEEEec
Q 021080 172 SACTGVVIGGKVHVLHKGLSTVQVLDHMGLGWTVEDYGWL----QGPMAIVHD-SVYLMSH-GLIIKQ-HRDV-RKVVAS 243 (317)
Q Consensus 172 ~~~~~~~~~g~lyv~gG~~~~v~~yd~~~~~W~~~~~~~~----~~~~~~~~~-~ly~~g~-~~~~~y-d~~~-W~~v~~ 243 (317)
..++..+.+.+=++.|. ...+..=+-.-.+|..++..-. +.....+++ +-|+++. +.+++- |-.+ |+.+.+
T Consensus 87 ~f~sv~f~~~egw~vGe-~sqll~T~DgGqsWARi~~~e~~eg~~~sI~f~d~q~g~m~gd~Gail~T~DgGk~Wk~l~e 165 (339)
T COG4447 87 AFHSVSFLGMEGWIVGE-PSQLLHTTDGGQSWARIPLSEKLEGFPDSITFLDDQRGEMLGDQGAILKTTDGGKNWKALVE 165 (339)
T ss_pred heeeeeeecccccccCC-cceEEEecCCCcchhhchhhcCCCCCcceeEEecchhhhhhcccceEEEecCCcccHhHhcc
Confidence 34445556666666655 4456666666778998863221 233334443 3455554 444433 4444 987654
No 203
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.24 E-value=4.7e+02 Score=22.66 Aligned_cols=98 Identities=13% Similarity=0.111 Sum_probs=0.0
Q ss_pred EEEcCcCCCCCCCCCCCCCcccccceeEecccCCCCCCCcCCCceeEEeeCCCCceee----------------CCCCCc
Q 021080 105 FVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRGFTSCRKSISQAEMYDPEKDVWVP----------------IPDLHR 168 (317)
Q Consensus 105 yv~GG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~G~~~~~~~~~~~~~yd~~t~~W~~----------------~~~~p~ 168 (317)
++.||++ +.+-+++...++|.. .|....
T Consensus 178 lvSgGcD------------------------------------n~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl 221 (299)
T KOG1332|consen 178 LVSGGCD------------------------------------NLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGL 221 (299)
T ss_pred eeccCCc------------------------------------cceeeeecCCcchhhhhhhhhcchhhhhhhhccccCC
Q ss_pred cCCCceEEEEECCEEEEEecCceeEEEEeCCCCcEEeccCCcc---CCcEEEEcCeEEEEeC-cEEEEecCCc---eEEE
Q 021080 169 THNSACTGVVIGGKVHVLHKGLSTVQVLDHMGLGWTVEDYGWL---QGPMAIVHDSVYLMSH-GLIIKQHRDV---RKVV 241 (317)
Q Consensus 169 ~~r~~~~~~~~~g~lyv~gG~~~~v~~yd~~~~~W~~~~~~~~---~~~~~~~~~~ly~~g~-~~~~~yd~~~---W~~v 241 (317)
+ +...+++.-||++++. ...-+.+..+=+.+.+++. +.+-...++.|-+-+| +.+..+.... |+++
T Consensus 222 ~-~s~iAS~SqDg~viIw------t~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~~Gkw~~v 294 (299)
T KOG1332|consen 222 P-KSTIASCSQDGTVIIW------TKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENVDGKWEEV 294 (299)
T ss_pred C-ceeeEEecCCCcEEEE------EecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCCCCcEEEc
Q ss_pred eccc
Q 021080 242 ASAS 245 (317)
Q Consensus 242 ~~~~ 245 (317)
....
T Consensus 295 ~~~~ 298 (299)
T KOG1332|consen 295 GEVS 298 (299)
T ss_pred cccC
No 204
>PF06079 Apyrase: Apyrase; InterPro: IPR009283 This family consists of several eukaryotic apyrase (or adenosine diphosphatase) proteins (3.6.1.5 from EC), and related nucleoside diphosphatases (3.6.1.6 from EC). The salivary apyrases of blood-feeding arthropods are nucleotide hydrolysing enzymes implicated in the inhibition of host platelet aggregation through the hydrolysis of extracellular adenosine diphosphate [].; GO: 0005509 calcium ion binding, 0016462 pyrophosphatase activity; PDB: 2H2N_A 1S18_A 2H2U_A 1S1D_B.
Probab=23.95 E-value=4.1e+02 Score=23.48 Aligned_cols=53 Identities=11% Similarity=0.254 Sum_probs=26.3
Q ss_pred cEEEEcCeEEEEeC--cEEEEecCCc---eEEEecccccccc-ccEE-EEEECCeEEEEe
Q 021080 214 PMAIVHDSVYLMSH--GLIIKQHRDV---RKVVASASEFRRR-IGFA-MIGMGDDIYVIG 266 (317)
Q Consensus 214 ~~~~~~~~ly~~g~--~~~~~yd~~~---W~~v~~~~~~~~r-~~~~-~~~~~~~lyv~G 266 (317)
-.++.+|+||.++. +.++..+.++ |..+..-...... +-.- +++-+++|||-|
T Consensus 58 ELv~FngkLys~DDrTGiVyeI~~~~~vPwviL~dGdG~~~kGfK~EWaTVKd~~LyvGs 117 (291)
T PF06079_consen 58 ELVVFNGKLYSFDDRTGIVYEIKGDKAVPWVILSDGDGNTSKGFKAEWATVKDDKLYVGS 117 (291)
T ss_dssp EEEEETTEEEEEETTT-EEEEEETTEEEEEEE-BSTTTTESSB----EEEEETTEEEEE-
T ss_pred eeeeECCEEeeeeCCCceEEEEeCCceeceEEEeCCCCCccccccceeeEEeCCeeeecc
Confidence 34566777777776 4555555444 7776654431111 1111 345577787643
No 205
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=23.86 E-value=5.3e+02 Score=23.07 Aligned_cols=106 Identities=14% Similarity=0.025 Sum_probs=58.6
Q ss_pred CceEEEEEeCC--CCceEEEeCCCCCEeecCCCCccccccCCeeEEEeCCEEEEEcCcCCCCCCCCCCCCCcccccceeE
Q 021080 55 ENLLCVCAFDP--ENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWS 132 (317)
Q Consensus 55 ~~~l~v~gg~~--~~~~~~yd~~~~~W~~~~~~p~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~ 132 (317)
++.|++.-++. .--+|..|.++++=..+..-|.. ....+.+..+| +.+.
T Consensus 117 ~D~LLlAR~DGh~nLGvy~ldr~~g~~~~L~~~ps~------KG~~~~D~a~F---~i~~-------------------- 167 (339)
T PF09910_consen 117 EDRLLLARADGHANLGVYSLDRRTGKAEKLSSNPSL------KGTLVHDYACF---GINN-------------------- 167 (339)
T ss_pred cCEEEEEecCCcceeeeEEEcccCCceeeccCCCCc------CceEeeeeEEE---eccc--------------------
Confidence 55666665543 44667778788877777666653 22222232222 2211
Q ss_pred ecccCCCCCCCcCCCceeEEeeCCCCce--eeCCCC------CccCCCceEEEEECCEEEEEecCceeEEEEeCCCC
Q 021080 133 YDPVTRGFTSCRKSISQAEMYDPEKDVW--VPIPDL------HRTHNSACTGVVIGGKVHVLHKGLSTVQVLDHMGL 201 (317)
Q Consensus 133 ~d~~~~G~~~~~~~~~~~~~yd~~t~~W--~~~~~~------p~~~r~~~~~~~~~g~lyv~gG~~~~v~~yd~~~~ 201 (317)
.......+++||..+++| +..+.- +.-++...+.+...+++|.+-+ .-+.+.||..+
T Consensus 168 ----------~~~g~~~i~~~Dli~~~~~~e~f~~~~s~Dg~~~~~~~~G~~~s~ynR~faF~r--GGi~vgnP~~~ 232 (339)
T PF09910_consen 168 ----------FHKGVSGIHCLDLISGKWVIESFDVSLSVDGGPVIRPELGAMASAYNRLFAFVR--GGIFVGNPYNG 232 (339)
T ss_pred ----------cccCCceEEEEEccCCeEEEEecccccCCCCCceEeeccccEEEEeeeEEEEEe--ccEEEeCCCCC
Confidence 122367899999999999 443211 1111333345667777776622 34777777644
No 206
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=23.58 E-value=48 Score=19.54 Aligned_cols=18 Identities=22% Similarity=0.191 Sum_probs=13.9
Q ss_pred CcCCCCcHHHHHHHhccC
Q 021080 3 ELIEGLPDAVALRCLARV 20 (317)
Q Consensus 3 ~~~~~Lp~d~~~~~l~r~ 20 (317)
++||.++++.|..+|..-
T Consensus 10 ~mFP~~~~~~I~~~L~~~ 27 (42)
T PF02845_consen 10 EMFPDLDREVIEAVLQAN 27 (42)
T ss_dssp HHSSSS-HHHHHHHHHHT
T ss_pred HHCCCCCHHHHHHHHHHc
Confidence 578999999999998554
No 207
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=22.94 E-value=3.2e+02 Score=25.88 Aligned_cols=43 Identities=16% Similarity=0.345 Sum_probs=24.7
Q ss_pred CEEEEEcCcCCCCCCCCCCCCCcccccceeEecccCCCCCCCcCCCceeEEeeCCCCceeeCCCCCcc
Q 021080 102 GKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRGFTSCRKSISQAEMYDPEKDVWVPIPDLHRT 169 (317)
Q Consensus 102 ~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~G~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~ 169 (317)
.++|++||.+. .+..+|..++ .-+..||-.-+.|..+.=++..
T Consensus 312 ~n~fl~G~sd~----------------ki~~wDiRs~---------kvvqeYd~hLg~i~~i~F~~~g 354 (503)
T KOG0282|consen 312 QNIFLVGGSDK----------------KIRQWDIRSG---------KVVQEYDRHLGAILDITFVDEG 354 (503)
T ss_pred CcEEEEecCCC----------------cEEEEeccch---------HHHHHHHhhhhheeeeEEccCC
Confidence 48999999643 3455554331 2333456555666666555555
No 208
>PF00045 Hemopexin: Hemopexin; InterPro: IPR018487 Hemopexin (3.2.1.35 from EC) is a serum glycoprotein that binds haem and transports it to the liver for breakdown and iron recovery, after which the free hemopexin returns to the circulation []. Hemopexin prevents haem-mediated oxidative stress. Structurally hemopexin consists of two similar halves of approximately two hundred amino acid residues connected by a histidine-rich hinge region. Each half is itself formed by the repetition of a basic unit of some 35 to 45 residues. Hemopexin-like domains have been found in two other types of proteins, vitronectin [], a cell adhesion and spreading factor found in plasma and tissues, and matrixins MMP-1, MMP-2, MMP-3, MMP-9, MMP-10, MMP-11, MMP-12, MMP-14, MMP-15 and MMP-16, members of the matrix metalloproteinase family that cleave extracellular matrix constituents []. These zinc endopeptidases, which belong to MEROPS peptidase subfamily M10A, have a single hemopexin-like domain in their C-terminal section. It is suggested that the hemopexin domain facilitates binding to a variety of molecules and proteins, for example the HX repeats of some matrixins bind tissue inhibitor of metallopeptidases (TIMPs). This entry represents the repeat found in hempoxein and related domains.; PDB: 1SU3_B 2CLT_B 3V6N_B 3C7X_A 1GXD_A 1RTG_A 1CK7_A 1GEN_A 1ITV_A 2JXY_A ....
Probab=22.45 E-value=1.8e+02 Score=17.13 Aligned_cols=21 Identities=5% Similarity=-0.001 Sum_probs=17.0
Q ss_pred EEEc-CeEEEEeCcEEEEecCC
Q 021080 216 AIVH-DSVYLMSHGLIIKQHRD 236 (317)
Q Consensus 216 ~~~~-~~ly~~g~~~~~~yd~~ 236 (317)
...+ +++|++-|+..+.|+..
T Consensus 5 ~~~~~g~~yfFkg~~ywr~~~~ 26 (45)
T PF00045_consen 5 FQWGNGKTYFFKGNQYWRFDES 26 (45)
T ss_dssp EEETTTEEEEEETTEEEEEETT
T ss_pred EEeCCCcEEEEECCEEEEEcCc
Confidence 3444 88999999999999877
No 209
>PTZ00421 coronin; Provisional
Probab=22.22 E-value=7e+02 Score=23.92 Aligned_cols=57 Identities=12% Similarity=-0.190 Sum_probs=32.0
Q ss_pred CEEEEEecCceeEEEEeCCCCcEE-eccCCccCCcEEE--EcCeEEEEeC--cEEEEecCCc
Q 021080 181 GKVHVLHKGLSTVQVLDHMGLGWT-VEDYGWLQGPMAI--VHDSVYLMSH--GLIIKQHRDV 237 (317)
Q Consensus 181 g~lyv~gG~~~~v~~yd~~~~~W~-~~~~~~~~~~~~~--~~~~ly~~g~--~~~~~yd~~~ 237 (317)
+.+.+.|+....+..||..+++-. .+.........+. .++.+++.++ +.+..||+.+
T Consensus 138 ~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rs 199 (493)
T PTZ00421 138 MNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRD 199 (493)
T ss_pred CCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCC
Confidence 356677776677899998876522 2221111111111 1456555554 6788999876
No 210
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=21.51 E-value=6.3e+02 Score=23.11 Aligned_cols=132 Identities=16% Similarity=0.100 Sum_probs=68.3
Q ss_pred ceeEEeeCCCCceeeCCCCC-ccCCCceEEEEECCEEEEEec--CceeEEEEeCCCCcEEec-cCCccCCcEEE--EcCe
Q 021080 148 SQAEMYDPEKDVWVPIPDLH-RTHNSACTGVVIGGKVHVLHK--GLSTVQVLDHMGLGWTVE-DYGWLQGPMAI--VHDS 221 (317)
Q Consensus 148 ~~~~~yd~~t~~W~~~~~~p-~~~r~~~~~~~~~g~lyv~gG--~~~~v~~yd~~~~~W~~~-~~~~~~~~~~~--~~~~ 221 (317)
+.+.++|..+++-....+.. .| ........++++|+... ..+.+...|..+++=... +....+..++. .+++
T Consensus 96 ~~v~vid~~~~~~~~~~~vG~~P--~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P~~~a~~p~g~~ 173 (381)
T COG3391 96 NTVSVIDTATNTVLGSIPVGLGP--VGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTPTGVAVDPDGNK 173 (381)
T ss_pred CeEEEEcCcccceeeEeeeccCC--ceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCcceEEECCCCCe
Confidence 45666665555433221111 22 11122244669999876 468899999998863322 21111222222 3566
Q ss_pred EEEEe--CcEEEEecCCc---eEEEe---ccccccccccEEEEEECCeEEEEeCcccCCCCceecccCcceeEeecCCC
Q 021080 222 VYLMS--HGLIIKQHRDV---RKVVA---SASEFRRRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAE 292 (317)
Q Consensus 222 ly~~g--~~~~~~yd~~~---W~~v~---~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~v~~yd~~~~ 292 (317)
+|+.. .+.+..+|.+. |+ -. ..+.....+.-.+-.-+.++|+.-..... ..+...|..++
T Consensus 174 vyv~~~~~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~----------~~v~~id~~~~ 241 (381)
T COG3391 174 VYVTNSDDNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGS----------NNVLKIDTATG 241 (381)
T ss_pred EEEEecCCCeEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEEEeccCCC----------ceEEEEeCCCc
Confidence 99997 47888888776 64 11 12211111212222235678888665431 24555666554
No 211
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=21.44 E-value=2.9e+02 Score=24.87 Aligned_cols=54 Identities=9% Similarity=-0.017 Sum_probs=37.8
Q ss_pred EECCEEEEEecCceeEEEEeCCCCcEEeccCCccCCcEEEEcCeEEEEeCcEEE
Q 021080 178 VIGGKVHVLHKGLSTVQVLDHMGLGWTVEDYGWLQGPMAIVHDSVYLMSHGLII 231 (317)
Q Consensus 178 ~~~g~lyv~gG~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~ly~~g~~~~~ 231 (317)
-++|+||+.--....+..+|+++++.+.+...+.........|.+.++|-+++.
T Consensus 210 WhdgrLwvldsgtGev~~vD~~~G~~e~Va~vpG~~rGL~f~G~llvVgmSk~R 263 (335)
T TIGR03032 210 WYQGKLWLLNSGRGELGYVDPQAGKFQPVAFLPGFTRGLAFAGDFAFVGLSKLR 263 (335)
T ss_pred EeCCeEEEEECCCCEEEEEcCCCCcEEEEEECCCCCcccceeCCEEEEEecccc
Confidence 467999998766678999999999999887666533333333666666655443
No 212
>PRK01742 tolB translocation protein TolB; Provisional
Probab=21.31 E-value=6.7e+02 Score=23.29 Aligned_cols=91 Identities=10% Similarity=0.056 Sum_probs=40.9
Q ss_pred eeEEeeCCCCceeeCCCCCccCCCceEEEEECCE-EEEEec--CceeEEEEeCCCCcEEeccCCccCCcEEEEc-CeEEE
Q 021080 149 QAEMYDPEKDVWVPIPDLHRTHNSACTGVVIGGK-VHVLHK--GLSTVQVLDHMGLGWTVEDYGWLQGPMAIVH-DSVYL 224 (317)
Q Consensus 149 ~~~~yd~~t~~W~~~~~~p~~~r~~~~~~~~~g~-lyv~gG--~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~-~~ly~ 224 (317)
+++.+|..+++.+.+..-... . ......-||+ |++... ....++.+|.....-..+... .......-+ ..|++
T Consensus 273 ~Iy~~d~~~~~~~~lt~~~~~-~-~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~-~~~~~~SpDG~~ia~ 349 (429)
T PRK01742 273 NIYVMGANGGTPSQLTSGAGN-N-TEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGR-GYSAQISADGKTLVM 349 (429)
T ss_pred EEEEEECCCCCeEeeccCCCC-c-CCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCC-CCCccCCCCCCEEEE
Confidence 466667766665555432211 1 1112223444 554443 234566666654432322211 011111113 34555
Q ss_pred EeCcEEEEecCCc--eEEEe
Q 021080 225 MSHGLIIKQHRDV--RKVVA 242 (317)
Q Consensus 225 ~g~~~~~~yd~~~--W~~v~ 242 (317)
.+...++.+|..+ ++.+.
T Consensus 350 ~~~~~i~~~Dl~~g~~~~lt 369 (429)
T PRK01742 350 INGDNVVKQDLTSGSTEVLS 369 (429)
T ss_pred EcCCCEEEEECCCCCeEEec
Confidence 5556677777655 66543
No 213
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=21.01 E-value=7e+02 Score=23.42 Aligned_cols=19 Identities=11% Similarity=-0.067 Sum_probs=14.9
Q ss_pred eeEEEEeCCCCc-EEeccCC
Q 021080 191 STVQVLDHMGLG-WTVEDYG 209 (317)
Q Consensus 191 ~~v~~yd~~~~~-W~~~~~~ 209 (317)
..+..+|+.++. |+.+...
T Consensus 350 ~~i~~~~~~~~~~~~~lt~~ 369 (425)
T COG0823 350 WDIDKNDLASGGKIRILTST 369 (425)
T ss_pred eeeEEeccCCCCcEEEcccc
Confidence 568899998887 8887654
No 214
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=20.88 E-value=1.8e+02 Score=16.46 Aligned_cols=17 Identities=18% Similarity=0.212 Sum_probs=8.7
Q ss_pred ceeEEEEeCCCCc--EEec
Q 021080 190 LSTVQVLDHMGLG--WTVE 206 (317)
Q Consensus 190 ~~~v~~yd~~~~~--W~~~ 206 (317)
...+..+|..+++ |+..
T Consensus 9 ~g~l~AlD~~TG~~~W~~~ 27 (38)
T PF01011_consen 9 DGYLYALDAKTGKVLWKFQ 27 (38)
T ss_dssp TSEEEEEETTTTSEEEEEE
T ss_pred CCEEEEEECCCCCEEEeee
Confidence 3455555655554 5443
No 215
>PLN00181 protein SPA1-RELATED; Provisional
Probab=20.23 E-value=9.3e+02 Score=24.56 Aligned_cols=87 Identities=5% Similarity=-0.141 Sum_probs=44.1
Q ss_pred ceeEEeeCCCCceeeCCCCCccCCCceEEEE--ECCEEEEEecCceeEEEEeCCCCc-EEeccCCccCCcEEEE---cCe
Q 021080 148 SQAEMYDPEKDVWVPIPDLHRTHNSACTGVV--IGGKVHVLHKGLSTVQVLDHMGLG-WTVEDYGWLQGPMAIV---HDS 221 (317)
Q Consensus 148 ~~~~~yd~~t~~W~~~~~~p~~~r~~~~~~~--~~g~lyv~gG~~~~v~~yd~~~~~-W~~~~~~~~~~~~~~~---~~~ 221 (317)
..+.+||..+++-...-..+.. . -.+.+. .++.+++.|+....+..||..+.. ...+... .....+.. ++.
T Consensus 555 g~v~lWd~~~~~~~~~~~~H~~-~-V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~ 631 (793)
T PLN00181 555 GVVQVWDVARSQLVTEMKEHEK-R-VWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGR 631 (793)
T ss_pred CeEEEEECCCCeEEEEecCCCC-C-EEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCC
Confidence 4566777766543221111111 1 112223 256788888866789999987653 2222211 00111111 355
Q ss_pred EEEEeC--cEEEEecCCc
Q 021080 222 VYLMSH--GLIIKQHRDV 237 (317)
Q Consensus 222 ly~~g~--~~~~~yd~~~ 237 (317)
+++.++ +.++.||...
T Consensus 632 ~latgs~dg~I~iwD~~~ 649 (793)
T PLN00181 632 SLAFGSADHKVYYYDLRN 649 (793)
T ss_pred EEEEEeCCCeEEEEECCC
Confidence 566654 6788888765
Done!