BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 021081
         (317 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4AWL|A Chain A, The Nf-y Transcription Factor Is Structurally And
           Functionally A Sequence Specific Histone
          Length = 78

 Score = 78.2 bits (191), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 36/64 (56%), Positives = 48/64 (75%)

Query: 150 DGPIYVNAKQYHGIIRRRKSRAKAVLENKITRKRKPYMHHSRHLHAMRRPRGCGGRFLNT 209
           + P+YVNAKQYH I++RR++RAK   E KI ++R+ Y+H SRH HAM R RG GGRF + 
Sbjct: 2   EEPLYVNAKQYHRILKRRQARAKLEAEGKIPKERRKYLHESRHRHAMARKRGEGGRFFSP 61

Query: 210 KTRD 213
           K +D
Sbjct: 62  KEKD 65


>pdb|4G91|A Chain A, Ccaat-Binding Complex From Aspergillus Nidulans
 pdb|4G92|A Chain A, Ccaat-Binding Complex From Aspergillus Nidulans With Dna
          Length = 64

 Score = 74.3 bits (181), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 36/59 (61%), Positives = 46/59 (77%), Gaps = 1/59 (1%)

Query: 150 DGPIYVNAKQYHGIIRRRKSRAKAVLENKITRK-RKPYMHHSRHLHAMRRPRGCGGRFL 207
           + P+YVNAKQ+H I++RR +R K   + ++T K RKPY+H SRH HAMRRPRG GGRFL
Sbjct: 2   ESPLYVNAKQFHRILKRRVARQKLEEQLRLTSKGRKPYLHESRHNHAMRRPRGPGGRFL 60


>pdb|1A39|A Chain A, Humicola Insolens Endocellulase Egi S37w, P39w
           Double-Mutant
          Length = 402

 Score = 29.3 bits (64), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 25/96 (26%), Positives = 37/96 (38%), Gaps = 15/96 (15%)

Query: 202 CGGRFLNTKTRDGSGRTEEKKTCIQQL-LQPTGSQSSEV------------LQSESGTLS 248
           C  +   T   +G G  E K +C  ++ +    S++S V             + E     
Sbjct: 172 CDAQCFVTPFINGLGNIEGKGSCCNEMDIWEANSRASHVAPHTCNKKGLYLCEGEECAFE 231

Query: 249 SPKETNGSGPNLSGSEVTSMYSRGEFGHFRINHLGP 284
              + NG G N     VT  Y RGE   F++N L P
Sbjct: 232 GVCDKNGCGWNNYRVNVTDYYGRGE--EFKVNTLKP 265


>pdb|2A39|A Chain A, Humicola Insolens Endocellulase Egi Native Structure
 pdb|2A39|B Chain B, Humicola Insolens Endocellulase Egi Native Structure
          Length = 398

 Score = 29.3 bits (64), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 25/96 (26%), Positives = 37/96 (38%), Gaps = 15/96 (15%)

Query: 202 CGGRFLNTKTRDGSGRTEEKKTCIQQL-LQPTGSQSSEV------------LQSESGTLS 248
           C  +   T   +G G  E K +C  ++ +    S++S V             + E     
Sbjct: 172 CDAQCFVTPFINGLGNIEGKGSCCNEMDIWEANSRASHVAPHTCNKKGLYLCEGEECAFE 231

Query: 249 SPKETNGSGPNLSGSEVTSMYSRGEFGHFRINHLGP 284
              + NG G N     VT  Y RGE   F++N L P
Sbjct: 232 GVCDKNGCGWNNYRVNVTDYYGRGE--EFKVNTLKP 265


>pdb|3F9V|A Chain A, Crystal Structure Of A Near Full-Length Archaeal Mcm:
           Functional Insights For An Aaa+ Hexameric Helicase
          Length = 595

 Score = 28.5 bits (62), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 5/50 (10%)

Query: 148 TDDGPIYVNAKQYHGIIRRRKSRAKAVLENKITRKRKPYMHHSRHLHAMR 197
           T D PI +  +Q   +IR  ++ AK  L+ ++TR+        R ++ MR
Sbjct: 544 TPDSPILITPRQLEALIRISEAYAKMALKAEVTRE-----DAERAINIMR 588


>pdb|3TLM|A Chain A, Crystal Structure Of Endoplasmic Reticulum Ca2+-Atpase
           (Serca) From Bovine Muscle
          Length = 992

 Score = 28.1 bits (61), Expect = 7.3,   Method: Composition-based stats.
 Identities = 14/31 (45%), Positives = 18/31 (58%)

Query: 210 KTRDGSGRTEEKKTCIQQLLQPTGSQSSEVL 240
           K RD    TE+ KT +QQ L   G Q S+V+
Sbjct: 234 KIRDQMAATEQDKTPLQQKLDEFGEQLSKVI 264


>pdb|3BA6|A Chain A, Structure Of The Ca2e1p Phosphoenzyme Intermediate Of The
           Serca Ca2+-Atpase
          Length = 994

 Score = 28.1 bits (61), Expect = 7.3,   Method: Composition-based stats.
 Identities = 14/31 (45%), Positives = 18/31 (58%)

Query: 210 KTRDGSGRTEEKKTCIQQLLQPTGSQSSEVL 240
           K RD    TE+ KT +QQ L   G Q S+V+
Sbjct: 234 KIRDQMAATEQDKTPLQQKLDEFGEQLSKVI 264


>pdb|2DQS|A Chain A, Crystal Structure Of The Calcium Pump With Amppcp In The
           Absence Of Calcium
 pdb|2EAR|A Chain A, P21 Crystal Of The Sr Ca2+-Atpase With Bound Tg
 pdb|2EAT|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa And
           Tg
 pdb|2ZBF|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 And Tg In
           The Absence Of Calcium
 pdb|2ZBG|A Chain A, Calcium Pump Crystal Structure With Bound Alf4 And Tg In
           The Absence Of Calcium
 pdb|3AR2|A Chain A, Calcium Pump Crystal Structure With Bound Amppcp And Ca2+
 pdb|3AR3|A Chain A, Calcium Pump Crystal Structure With Bound Adp And Tg
 pdb|3AR4|A Chain A, Calcium Pump Crystal Structure With Bound Atp And Tg In
           The Absence Of Ca2+
 pdb|3AR5|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Amp And Tg
 pdb|3AR6|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Adp And Tg
           In The Absence Of Calcium
 pdb|3AR7|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Atp And Tg
           In The Absence Of Ca2+
 pdb|3AR8|A Chain A, Calcium Pump Crystal Structure With Bound Alf4, Tnp-Amp
           And Tg
 pdb|3AR9|A Chain A, Calcium Pump Crystal Structure With Bound Bef3, Tnp-Amp
           And Tg In The Absence Of Calcium
 pdb|2ZBE|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 In The
           Absence Of Calcium And Tg
 pdb|2ZBE|B Chain B, Calcium Pump Crystal Structure With Bound Bef3 In The
           Absence Of Calcium And Tg
 pdb|2ZBD|A Chain A, Crystal Structure Of The Sr Calcium Pump With Bound
           Aluminium Fluoride, Adp And Calcium
          Length = 995

 Score = 28.1 bits (61), Expect = 7.3,   Method: Composition-based stats.
 Identities = 14/31 (45%), Positives = 18/31 (58%)

Query: 210 KTRDGSGRTEEKKTCIQQLLQPTGSQSSEVL 240
           K RD    TE+ KT +QQ L   G Q S+V+
Sbjct: 235 KIRDQMAATEQDKTPLQQKLDEFGEQLSKVI 265


>pdb|1KJU|A Chain A, Ca2+-Atpase In The E2 State
 pdb|1IWO|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
           Ca2+
 pdb|1IWO|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
           Ca2+
 pdb|1SU4|A Chain A, Crystal Structure Of Calcium Atpase With Two Bound Calcium
           Ions
 pdb|1T5S|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-amppcp Form
 pdb|1T5T|A Chain A, Structure Of The (Sr)ca2+-Atpase Ca2-E1-Adp:alf4- Form
 pdb|1VFP|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
 pdb|1VFP|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
 pdb|1WPG|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
 pdb|1WPG|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
 pdb|1WPG|C Chain C, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
 pdb|1WPG|D Chain D, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
 pdb|1XP5|A Chain A, Structure Of The (Sr)ca2+-Atpase E2-Alf4- Form
 pdb|2AGV|A Chain A, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
 pdb|2AGV|B Chain B, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
 pdb|2BY4|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
           Thapsigargin Derivative Boc-12adt.
 pdb|2C88|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg):amppcp
           Form
 pdb|2C8K|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) With
           Partially Occupied Amppcp Site
 pdb|2C8L|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) Form
 pdb|2C9M|A Chain A, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
           In A P1 Crystal Form.
 pdb|2C9M|B Chain B, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
           In A P1 Crystal Form.
 pdb|2O9J|A Chain A, Crystal Structure Of Calcium Atpase With Bound Magnesium
           Fluoride And Cyclopiazonic Acid
 pdb|2OA0|A Chain A, Crystal Structure Of Calcium Atpase With Bound Adp And
           Cyclopiazonic Acid
 pdb|3B9B|A Chain A, Structure Of The E2 Beryllium Fluoride Complex Of The
           Serca Ca2+-Atpase
 pdb|3B9R|A Chain A, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
           Thapsigargin
 pdb|3B9R|B Chain B, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
           Thapsigargin
 pdb|2EAS|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa
 pdb|2EAU|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa In
           The Presence Of Curcumin
 pdb|3FGO|A Chain A, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
           The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
 pdb|3FGO|B Chain B, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
           The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
 pdb|3FPB|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
           To Cyclopiazonic Acid With Atp
 pdb|3FPS|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
           To Cyclopiazonic And Adp
 pdb|3NAL|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
           Thapsigargin Derivative Dtb
 pdb|3NAM|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
           Thapsigargin Derivative Dotg
 pdb|3NAN|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With A
           Thapsigargin Derivative Boc-(Phi)tg
 pdb|3N5K|A Chain A, Structure Of The (sr)ca2+-atpase E2-alf4- Form
 pdb|3N5K|B Chain B, Structure Of The (sr)ca2+-atpase E2-alf4- Form
 pdb|3N8G|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-caamppcp Form
 pdb|2YFY|A Chain A, Serca In The Hne2 State Complexed With Debutanoyl
           Thapsigargin
          Length = 994

 Score = 28.1 bits (61), Expect = 7.3,   Method: Composition-based stats.
 Identities = 14/31 (45%), Positives = 18/31 (58%)

Query: 210 KTRDGSGRTEEKKTCIQQLLQPTGSQSSEVL 240
           K RD    TE+ KT +QQ L   G Q S+V+
Sbjct: 234 KIRDQMAATEQDKTPLQQKLDEFGEQLSKVI 264


>pdb|1XSI|A Chain A, Structure Of A Family 31 Alpha Glycosidase
 pdb|1XSI|B Chain B, Structure Of A Family 31 Alpha Glycosidase
 pdb|1XSI|C Chain C, Structure Of A Family 31 Alpha Glycosidase
 pdb|1XSI|D Chain D, Structure Of A Family 31 Alpha Glycosidase
 pdb|1XSI|E Chain E, Structure Of A Family 31 Alpha Glycosidase
 pdb|1XSI|F Chain F, Structure Of A Family 31 Alpha Glycosidase
 pdb|1XSJ|A Chain A, Structure Of A Family 31 Alpha Glycosidase
 pdb|1XSJ|B Chain B, Structure Of A Family 31 Alpha Glycosidase
 pdb|1XSJ|C Chain C, Structure Of A Family 31 Alpha Glycosidase
 pdb|1XSJ|D Chain D, Structure Of A Family 31 Alpha Glycosidase
 pdb|1XSJ|E Chain E, Structure Of A Family 31 Alpha Glycosidase
 pdb|1XSJ|F Chain F, Structure Of A Family 31 Alpha Glycosidase
 pdb|1XSK|A Chain A, Structure Of A Family 31 Alpha Glycosidase Glycosyl-Enzyme
           Intermediate
 pdb|1XSK|B Chain B, Structure Of A Family 31 Alpha Glycosidase Glycosyl-Enzyme
           Intermediate
 pdb|1XSK|C Chain C, Structure Of A Family 31 Alpha Glycosidase Glycosyl-Enzyme
           Intermediate
 pdb|1XSK|D Chain D, Structure Of A Family 31 Alpha Glycosidase Glycosyl-Enzyme
           Intermediate
 pdb|1XSK|E Chain E, Structure Of A Family 31 Alpha Glycosidase Glycosyl-Enzyme
           Intermediate
 pdb|1XSK|F Chain F, Structure Of A Family 31 Alpha Glycosidase Glycosyl-Enzyme
           Intermediate
          Length = 778

 Score = 27.7 bits (60), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 12/44 (27%), Positives = 22/44 (50%)

Query: 208 NTKTRDGSGRTEEKKTCIQQLLQPTGSQSSEVLQSESGTLSSPK 251
           NT T  G+G  +    C++ +++  G Q     +SE G +  P+
Sbjct: 721 NTITVTGAGEAKNWTLCLRNVVKVNGLQDGSQAESEQGLVVKPQ 764


>pdb|2F2H|A Chain A, Structure Of The Yici Thiosugar Michaelis Complex
 pdb|2F2H|B Chain B, Structure Of The Yici Thiosugar Michaelis Complex
 pdb|2F2H|C Chain C, Structure Of The Yici Thiosugar Michaelis Complex
 pdb|2F2H|D Chain D, Structure Of The Yici Thiosugar Michaelis Complex
 pdb|2F2H|E Chain E, Structure Of The Yici Thiosugar Michaelis Complex
 pdb|2F2H|F Chain F, Structure Of The Yici Thiosugar Michaelis Complex
          Length = 773

 Score = 27.7 bits (60), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 12/44 (27%), Positives = 22/44 (50%)

Query: 208 NTKTRDGSGRTEEKKTCIQQLLQPTGSQSSEVLQSESGTLSSPK 251
           NT T  G+G  +    C++ +++  G Q     +SE G +  P+
Sbjct: 721 NTITVTGAGEAKNWTLCLRNVVKVNGLQDGSQAESEQGLVVKPQ 764


>pdb|1WE5|A Chain A, Crystal Structure Of Alpha-Xylosidase From Escherichia
           Coli
 pdb|1WE5|B Chain B, Crystal Structure Of Alpha-Xylosidase From Escherichia
           Coli
 pdb|1WE5|C Chain C, Crystal Structure Of Alpha-Xylosidase From Escherichia
           Coli
 pdb|1WE5|D Chain D, Crystal Structure Of Alpha-Xylosidase From Escherichia
           Coli
 pdb|1WE5|E Chain E, Crystal Structure Of Alpha-Xylosidase From Escherichia
           Coli
 pdb|1WE5|F Chain F, Crystal Structure Of Alpha-Xylosidase From Escherichia
           Coli
          Length = 772

 Score = 27.7 bits (60), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 12/44 (27%), Positives = 22/44 (50%)

Query: 208 NTKTRDGSGRTEEKKTCIQQLLQPTGSQSSEVLQSESGTLSSPK 251
           NT T  G+G  +    C++ +++  G Q     +SE G +  P+
Sbjct: 721 NTITVTGAGEAKNWTLCLRNVVKVNGLQDGSQAESEQGLVVKPQ 764


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.133    0.400 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,997,597
Number of Sequences: 62578
Number of extensions: 415492
Number of successful extensions: 738
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 725
Number of HSP's gapped (non-prelim): 17
length of query: 317
length of database: 14,973,337
effective HSP length: 99
effective length of query: 218
effective length of database: 8,778,115
effective search space: 1913629070
effective search space used: 1913629070
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)