Query 021081
Match_columns 317
No_of_seqs 150 out of 209
Neff 3.1
Searched_HMMs 46136
Date Fri Mar 29 07:27:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021081.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021081hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1561 CCAAT-binding factor, 100.0 1.2E-42 2.6E-47 328.2 17.9 104 110-214 126-247 (307)
2 smart00521 CBF CCAAT-Binding t 100.0 5E-37 1.1E-41 233.0 5.9 61 149-209 2-62 (62)
3 PF02045 CBFB_NFYA: CCAAT-bind 100.0 9.7E-35 2.1E-39 218.3 3.9 57 150-206 1-58 (58)
4 COG5224 HAP2 CCAAT-binding fac 99.8 1.4E-19 3.1E-24 165.9 2.2 63 150-214 158-220 (248)
5 PF06203 CCT: CCT motif; Inte 63.3 10 0.00023 27.9 3.3 26 184-210 19-44 (45)
6 KOG1561 CCAAT-binding factor, 49.3 17 0.00036 35.9 3.2 45 163-212 14-58 (307)
7 PF08331 DUF1730: Domain of un 34.7 60 0.0013 25.1 3.7 27 154-180 42-68 (78)
8 PF15046 DUF4532: Protein of u 31.6 53 0.0011 32.3 3.5 24 148-171 130-153 (279)
9 PF12254 DNA_pol_alpha_N: DNA 19.0 82 0.0018 24.8 1.9 21 149-169 22-44 (67)
10 cd01183 INT_SG1_C INT_SG1, DNA 17.0 2.2E+02 0.0047 23.9 4.1 43 157-199 123-170 (196)
No 1
>KOG1561 consensus CCAAT-binding factor, subunit B (HAP2) [Transcription]
Probab=100.00 E-value=1.2e-42 Score=328.22 Aligned_cols=104 Identities=49% Similarity=0.780 Sum_probs=90.4
Q ss_pred CCCccccc-cCCCCCCCc-cccc---ccCCCcc-------------cccccCCCCCCCCCceeecchhhhHHHHHHHHHH
Q 021081 110 FGQPMICA-KYPYADQYY-GVFS---AYGAQIS-------------GRIMLPLNLATDDGPIYVNAKQYHGIIRRRKSRA 171 (317)
Q Consensus 110 ~~~s~~~~-~~py~d~~y-G~~~---~yg~q~~-------------~r~~lP~~~~~~~~PvyVNaKQy~~IlrRR~~Ra 171 (317)
..+..+++ .+||.+|+| |++. +|++|.. .|++||.++. |++||||||||||||||||++||
T Consensus 126 ~~~~~~~~s~~~~~~p~~~g~~~~~~~y~~~~~~~~~~q~~g~~~~~r~pLP~~~~-e~ePl~VNaKQY~~IlrRRq~Ra 204 (307)
T KOG1561|consen 126 SMSPANNTSGNPITSPHYRGVLDMSGAYSGQPTNTASTQYSGPVPHDRTPLPQTDS-ETEPLYVNAKQYHRILRRRQARA 204 (307)
T ss_pred ccccccccccCCCCCCcccceecccccccCCCCccccccccCCCCcCcccCCcccc-CCCceeEcHHHHHHHHHHHHHHh
Confidence 34444444 588999977 7887 8988742 4888997774 56999999999999999999999
Q ss_pred HHHHhhhhhhcCCCCcccchhhhhhcCCCCCCCCccccccCCC
Q 021081 172 KAVLENKITRKRKPYMHHSRHLHAMRRPRGCGGRFLNTKTRDG 214 (317)
Q Consensus 172 k~e~~~kl~k~rk~YlhESRH~HAm~R~Rg~gGRFl~~k~~~~ 214 (317)
|||+++||+|.||||||||||+|||||+||+||||||+||.+.
T Consensus 205 KlEa~~klik~RkpYLHESRH~HAmkR~RG~GGRFln~k~~~~ 247 (307)
T KOG1561|consen 205 KLEATTKLIKARKPYLHESRHLHAMKRARGEGGRFLNTKEYHD 247 (307)
T ss_pred hhhhcccchhhcCccccchhhHHHhhcccCCCCCCCchhhhhh
Confidence 9999999999999999999999999999999999999999744
No 2
>smart00521 CBF CCAAT-Binding transcription Factor.
Probab=100.00 E-value=5e-37 Score=232.96 Aligned_cols=61 Identities=67% Similarity=1.194 Sum_probs=59.5
Q ss_pred CCCceeecchhhhHHHHHHHHHHHHHHhhhhhhcCCCCcccchhhhhhcCCCCCCCCcccc
Q 021081 149 DDGPIYVNAKQYHGIIRRRKSRAKAVLENKITRKRKPYMHHSRHLHAMRRPRGCGGRFLNT 209 (317)
Q Consensus 149 ~~~PvyVNaKQy~~IlrRR~~Rak~e~~~kl~k~rk~YlhESRH~HAm~R~Rg~gGRFl~~ 209 (317)
+|+|||||||||++|||||++|||+|++++|++.||||||||||+|||+|+||+||||||+
T Consensus 2 ~~~piyVNaKQy~~IlrRR~~Rak~e~~~kl~~~rkpYlhESRH~HAm~R~Rg~gGRFl~~ 62 (62)
T smart00521 2 EEEPVYVNAKQYHRILRRRQARAKLEAQGKLPKERKPYLHESRHLHAMRRPRGSGGRFLNT 62 (62)
T ss_pred CCcceeEcHHHHHHHHHHHHHHHHHHHhcchhhccCCcccchhHHHHHccCcCCCCCCCCC
Confidence 5799999999999999999999999999999999999999999999999999999999985
No 3
>PF02045 CBFB_NFYA: CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B; InterPro: IPR001289 The CCAAT-binding factor (CBFB/NF-YA) is a mammalian transcription factor that binds to a CCAAT motif in the promoters of a wide variety of genes, including type I collagen and albumin []. The factor is a heteromeric complex of A and B subunits, both of which are required for DNA-binding []. The subunits can interact in the absence of DNA-binding, conserved regions in each being important in mediating this interaction. The B subunit contains a region of similarity with the yeast protein HAP2 []. For the B subunit it has been suggested that the N-terminal portion of the conserved region is involved in subunit interaction and the C-terminal region involved in DNA-binding [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=100.00 E-value=9.7e-35 Score=218.27 Aligned_cols=57 Identities=70% Similarity=1.175 Sum_probs=56.1
Q ss_pred CCceeecchhhhHHHHHHHHHHHHHHhhhh-hhcCCCCcccchhhhhhcCCCCCCCCc
Q 021081 150 DGPIYVNAKQYHGIIRRRKSRAKAVLENKI-TRKRKPYMHHSRHLHAMRRPRGCGGRF 206 (317)
Q Consensus 150 ~~PvyVNaKQy~~IlrRR~~Rak~e~~~kl-~k~rk~YlhESRH~HAm~R~Rg~gGRF 206 (317)
|+|||||||||++|||||++|||+|++++| ++.||||||||||+|||+|+||+||||
T Consensus 1 ~~piyVNaKQY~rIlrRR~~Rakle~~~k~~~~~rk~YlheSRH~HA~~R~Rg~gGRF 58 (58)
T PF02045_consen 1 EEPIYVNAKQYHRILRRRQARAKLEAEGKLSPKKRKPYLHESRHKHAMRRPRGPGGRF 58 (58)
T ss_pred CCCeeECHHHHHHHHHHHHHHHHHHHhCCcchhhhHHHHHHHHHHHHHcCccCCCCCC
Confidence 589999999999999999999999999999 999999999999999999999999999
No 4
>COG5224 HAP2 CCAAT-binding factor, subunit B [Transcription]
Probab=99.76 E-value=1.4e-19 Score=165.92 Aligned_cols=63 Identities=41% Similarity=0.497 Sum_probs=56.2
Q ss_pred CCceeecchhhhHHHHHHHHHHHHHHhhhhhhcCCCCcccchhhhhhcCCCCCCCCccccccCCC
Q 021081 150 DGPIYVNAKQYHGIIRRRKSRAKAVLENKITRKRKPYMHHSRHLHAMRRPRGCGGRFLNTKTRDG 214 (317)
Q Consensus 150 ~~PvyVNaKQy~~IlrRR~~Rak~e~~~kl~k~rk~YlhESRH~HAm~R~Rg~gGRFl~~k~~~~ 214 (317)
.+|.|||+|||++|++||-+|++++ .+|+-.|..|||||||+|||+|+|+++||||++.+.+.
T Consensus 158 fqp~Yvnakq~n~i~kr~~~r~~ld--~~~~~~r~~ylHesrhkham~r~r~ptgrfLtasEi~~ 220 (248)
T COG5224 158 FQPDYVNAKQGNEISKRPGLRVYLD--DSVSAGRAFYLHESRHKHAMLRVRDPTGRFLTASEIDP 220 (248)
T ss_pred cCcchhhhhhhhHHhcchhHHHHHH--HHhhhhhhhccccchhhhhhhcccCCCcceecHHhhhh
Confidence 5799999999999999999998855 56667777799999999999999999999998887754
No 5
>PF06203 CCT: CCT motif; InterPro: IPR010402 The CCT (CONSTANS, CO-like, and TOC1) domain is a highly conserved basic module of ~43 amino acids, which is found near the C terminus of plant proteins often involved in light signal transduction. The CCT domain is found in association with other domains, such as the B-box zinc finger, the GATA-type zinc finger, the ZIM motif or the response regulatory domain. The CCT domain contains a putative nuclear localisation signal within the second half of the CCT motif and has been shown to be involved in nuclear localization and probably also has a role in protein-protein interaction [].; GO: 0005515 protein binding
Probab=63.28 E-value=10 Score=27.86 Aligned_cols=26 Identities=38% Similarity=0.473 Sum_probs=22.1
Q ss_pred CCCcccchhhhhhcCCCCCCCCccccc
Q 021081 184 KPYMHHSRHLHAMRRPRGCGGRFLNTK 210 (317)
Q Consensus 184 k~YlhESRH~HAm~R~Rg~gGRFl~~k 210 (317)
|.-.+++|..=|..|+|-. |||+..+
T Consensus 19 kkirY~~Rk~~A~~R~Rvk-GRFvk~~ 44 (45)
T PF06203_consen 19 KKIRYESRKAVADKRPRVK-GRFVKKS 44 (45)
T ss_pred ccCCcchHHHHHhhCCccC-CcccCCC
Confidence 4567899999999999975 9999654
No 6
>KOG1561 consensus CCAAT-binding factor, subunit B (HAP2) [Transcription]
Probab=49.28 E-value=17 Score=35.88 Aligned_cols=45 Identities=44% Similarity=0.815 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHhhhhhhcCCCCcccchhhhhhcCCCCCCCCccccccC
Q 021081 163 IIRRRKSRAKAVLENKITRKRKPYMHHSRHLHAMRRPRGCGGRFLNTKTR 212 (317)
Q Consensus 163 IlrRR~~Rak~e~~~kl~k~rk~YlhESRH~HAm~R~Rg~gGRFl~~k~~ 212 (317)
+++++..+++.+ ++-.....+||++|+.+.|.+ +.+++|++..+.
T Consensus 14 ~~~~~~~~q~~~-~~~~~~~~~p~~~~s~~~~q~----~~s~~~~s~~g~ 58 (307)
T KOG1561|consen 14 ILKRREARQKPE-ERGVQTTKKPYLHESGHKHQM----GPGGRFLSADGV 58 (307)
T ss_pred cccccccccccc-ccccccccccccCcccccccc----cccccccCcccc
Confidence 778888776544 335668899999999999999 789999974433
No 7
>PF08331 DUF1730: Domain of unknown function (DUF1730); InterPro: IPR013542 This domain of unknown function occurs in iron-sulphur cluster-binding proteins together with the 4Fe-4S binding domain (IPR001450 from INTERPRO).
Probab=34.69 E-value=60 Score=25.15 Aligned_cols=27 Identities=11% Similarity=0.348 Sum_probs=19.7
Q ss_pred eecchhhhHHHHHHHHHHHHHHhhhhh
Q 021081 154 YVNAKQYHGIIRRRKSRAKAVLENKIT 180 (317)
Q Consensus 154 yVNaKQy~~IlrRR~~Rak~e~~~kl~ 180 (317)
|.=-.-||.+||+|..+.-.-++.+.+
T Consensus 42 YA~G~DYH~vlk~~L~~l~~~i~~~~~ 68 (78)
T PF08331_consen 42 YAWGRDYHKVLKKKLEQLAEWIRELGP 68 (78)
T ss_pred hhccCChHHHHHHHHHHHHHHHHHHCC
Confidence 444567999999999887666665543
No 8
>PF15046 DUF4532: Protein of unknown function (DUF4532)
Probab=31.58 E-value=53 Score=32.32 Aligned_cols=24 Identities=21% Similarity=0.357 Sum_probs=18.5
Q ss_pred CCCCceeecchhhhHHHHHHHHHH
Q 021081 148 TDDGPIYVNAKQYHGIIRRRKSRA 171 (317)
Q Consensus 148 ~~~~PvyVNaKQy~~IlrRR~~Ra 171 (317)
....||||++++=+.++.|=++..
T Consensus 130 I~~~pif~D~~rK~qvI~rt~KEL 153 (279)
T PF15046_consen 130 ISCTPIFVDPNRKNQVILRTVKEL 153 (279)
T ss_pred hhcccceechhhhhHHHHHHHHHH
Confidence 346899999999998887755443
No 9
>PF12254 DNA_pol_alpha_N: DNA polymerase alpha subunit p180 N terminal; InterPro: IPR024647 This entry represents the N-terminal domain of DNA polymerase alpha catalytic subunit (the DNA polymerase alpha complex is composed of four subunits). This domain is approximately 70 amino acids in length and it contains a specific labile site [].
Probab=19.04 E-value=82 Score=24.83 Aligned_cols=21 Identities=29% Similarity=0.756 Sum_probs=17.4
Q ss_pred CCCcee--ecchhhhHHHHHHHH
Q 021081 149 DDGPIY--VNAKQYHGIIRRRKS 169 (317)
Q Consensus 149 ~~~Pvy--VNaKQy~~IlrRR~~ 169 (317)
++++|| |..++|..|.|.|..
T Consensus 22 e~~~IYdeVdE~eY~~~v~~R~~ 44 (67)
T PF12254_consen 22 EEEDIYDEVDEEEYRKLVRKRLQ 44 (67)
T ss_pred cccccceeeCHHHHHHHHHHHHh
Confidence 467898 999999999888744
No 10
>cd01183 INT_SG1_C INT_SG1, DNA breaking-rejoining enzymes, integrase/recombinases subgroup 1, C-terminal catalytic domain. The CD contains mainly predicted integrase/recombinase and site-specific XerD recombinases. The members of this CD are found predominantly in proteobacteria. These proteins have not been biochemically characerised as yet.
Probab=16.96 E-value=2.2e+02 Score=23.92 Aligned_cols=43 Identities=26% Similarity=0.262 Sum_probs=24.3
Q ss_pred chhhhHHHHHHHHHHHHHHhh-----hhhhcCCCCcccchhhhhhcCC
Q 021081 157 AKQYHGIIRRRKSRAKAVLEN-----KITRKRKPYMHHSRHLHAMRRP 199 (317)
Q Consensus 157 aKQy~~IlrRR~~Rak~e~~~-----kl~k~rk~YlhESRH~HAm~R~ 199 (317)
..++.+|+++--+++...+.. .....++--.|.=||.+|..-.
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~lRht~at~l~ 170 (196)
T cd01183 123 SAQLYRIVKRVFGAAADRLQADGFEEDAAQLRAASTHWLRHTHASHDL 170 (196)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccChhHHHhhcccchHHHHHHHHHHHH
Confidence 445777887765555333221 0111234457999999987544
Done!