Query 021081
Match_columns 317
No_of_seqs 150 out of 209
Neff 3.1
Searched_HMMs 29240
Date Mon Mar 25 12:28:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021081.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021081hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g92_A HAPB protein; transcrip 100.0 5.8E-37 2E-41 232.9 4.7 62 150-211 2-64 (64)
2 2l1q_A Liver-expressed antimic 12.6 1.1E+02 0.0037 21.4 2.0 24 30-58 2-25 (40)
3 3hde_A Lysozyme; antimicrobial 10.1 1.4E+02 0.0049 25.1 2.3 25 152-176 138-162 (165)
4 2anv_A Lysozyme; direct method 9.5 97 0.0033 25.3 1.1 21 152-173 123-143 (146)
5 1xju_A Lysozyme; secreted inac 9.5 1.8E+02 0.006 24.4 2.7 26 152-177 128-153 (163)
6 1xjt_A Lysozyme; open conforma 7.5 2.2E+02 0.0077 24.5 2.6 26 152-177 156-181 (191)
7 1qfq_B N36, 36-MER N-terminal 7.5 1.9E+02 0.0065 19.4 1.6 15 164-178 4-18 (35)
8 2k2w_A Recombination and DNA r 6.2 1.5E+02 0.0052 24.7 0.7 16 148-163 15-30 (118)
9 3gxv_A Replicative DNA helicas 5.8 3.2E+02 0.011 21.5 2.5 23 152-174 89-111 (123)
10 4f3m_A BH0337 protein; crispr, 5.4 2.4E+02 0.0082 25.9 1.6 24 156-188 115-138 (238)
No 1
>4g92_A HAPB protein; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Emericella nidulans} PDB: 4g91_A*
Probab=100.00 E-value=5.8e-37 Score=232.92 Aligned_cols=62 Identities=56% Similarity=0.999 Sum_probs=58.5
Q ss_pred CCceeecchhhhHHHHHHHHHHHHHHhhhhh-hcCCCCcccchhhhhhcCCCCCCCCcccccc
Q 021081 150 DGPIYVNAKQYHGIIRRRKSRAKAVLENKIT-RKRKPYMHHSRHLHAMRRPRGCGGRFLNTKT 211 (317)
Q Consensus 150 ~~PvyVNaKQy~~IlrRR~~Rak~e~~~kl~-k~rk~YlhESRH~HAm~R~Rg~gGRFl~~k~ 211 (317)
|+|||||||||++|||||++|||+|++++|+ +.||||||||||+|||+|+||+||||||++|
T Consensus 2 eePiyVNaKQy~~IlrRR~~Rakle~~~kl~~~~rk~YlhESRH~HAm~R~Rg~gGRFl~~~e 64 (64)
T 4g92_A 2 ESPLYVNAKQFHRILKRRVARQKLEEQLRLTSKGRKPYLHESRHNHAMRRPRGPGGRFLTADE 64 (64)
T ss_dssp -CCSCCCTTTHHHHHHHHHHHHHHHHHTTCCSSSCCSCSCHHHHHHHHHSCBCTTSCBCCCC-
T ss_pred CCCeeECHHHHHHHHHHHHHHHHHHHhCCcccccccCcchhHHHHHHhcCCcCCCCccccCCC
Confidence 6899999999999999999999999999985 8999999999999999999999999999875
No 2
>2l1q_A Liver-expressed antimicrobial peptide 2; polypeptide, disulfides, antimicrobial protein, LEAP-2; NMR {Homo sapiens}
Probab=12.63 E-value=1.1e+02 Score=21.41 Aligned_cols=24 Identities=33% Similarity=0.736 Sum_probs=17.0
Q ss_pred CCCccccCCCCCCCCccCCCCCCCccCCc
Q 021081 30 APWWSSLGSQSVYGASCGQLKPLSMETST 58 (317)
Q Consensus 30 ~PWW~~~G~q~~~~e~~g~sks~s~e~~~ 58 (317)
.|.|+++|.-| +|++|-+ ..|+.+
T Consensus 2 TP~WR~vs~kP-~GA~Crd----~~EC~T 25 (40)
T 2l1q_A 2 TPFWRGVSLRP-IGASCRD----DSECIT 25 (40)
T ss_dssp CCTTSSCSSBC-TTSBCSS----GGGBTT
T ss_pred cchhhhhcCCc-cchhhcc----chhhhh
Confidence 48999988866 6888755 455543
No 3
>3hde_A Lysozyme; antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase, late protein; 1.95A {Enterobacteria phage P21}
Probab=10.07 E-value=1.4e+02 Score=25.07 Aligned_cols=25 Identities=28% Similarity=0.457 Sum_probs=20.0
Q ss_pred ceeecchhhhHHHHHHHHHHHHHHh
Q 021081 152 PIYVNAKQYHGIIRRRKSRAKAVLE 176 (317)
Q Consensus 152 PvyVNaKQy~~IlrRR~~Rak~e~~ 176 (317)
-+|++-|...++.+||++..++=+.
T Consensus 138 W~~agGk~~~GLv~RR~~E~~l~l~ 162 (165)
T 3hde_A 138 WTYAGGKQWKGLMTRREIEREICLW 162 (165)
T ss_dssp CCEETTEECHHHHHHHHHHHHHHTG
T ss_pred HhhcCCEEchhHHHHHHHHHHHHHc
Confidence 5677788999999999998766543
No 4
>2anv_A Lysozyme; direct methods, lanthinide binding sites, hydrolase; 1.04A {Enterobacteria phage P22} PDB: 2anx_A
Probab=9.54 E-value=97 Score=25.27 Aligned_cols=21 Identities=10% Similarity=-0.013 Sum_probs=16.6
Q ss_pred ceeecchhhhHHHHHHHHHHHH
Q 021081 152 PIYVNAKQYHGIIRRRKSRAKA 173 (317)
Q Consensus 152 PvyVNaKQy~~IlrRR~~Rak~ 173 (317)
-+|.+-| ..++.+||++.+.+
T Consensus 123 w~~~~Gk-~~GL~~RR~~E~~l 143 (146)
T 2anv_A 123 WKKAGKD-PDILLPRRRRERAL 143 (146)
T ss_dssp CCCBTTB-TTTTHHHHHHHHHH
T ss_pred HHHcCCe-eHHHHHHHHHHHHH
Confidence 4566778 89999999988765
No 5
>1xju_A Lysozyme; secreted inactive conformation, hydrolase; 1.07A {Enterobacteria phage P1} SCOP: d.2.1.3
Probab=9.47 E-value=1.8e+02 Score=24.37 Aligned_cols=26 Identities=19% Similarity=0.257 Sum_probs=20.8
Q ss_pred ceeecchhhhHHHHHHHHHHHHHHhh
Q 021081 152 PIYVNAKQYHGIIRRRKSRAKAVLEN 177 (317)
Q Consensus 152 PvyVNaKQy~~IlrRR~~Rak~e~~~ 177 (317)
-+|++-|...++.+||++.+++=+.+
T Consensus 128 W~~~gGk~~~GL~~RR~~E~~l~~~~ 153 (163)
T 1xju_A 128 FVNSNGVPLRGLKIRREKERQLCLTG 153 (163)
T ss_dssp CCEETTEECHHHHHHHHHHHHHHHTT
T ss_pred HhhcCCEEehhhHHHHHHHHHHHhCC
Confidence 56677788999999999988776554
No 6
>1xjt_A Lysozyme; open conformation, hydrolase; HET: CIT; 1.75A {Enterobacteria phage P1} SCOP: d.2.1.3
Probab=7.53 E-value=2.2e+02 Score=24.53 Aligned_cols=26 Identities=19% Similarity=0.257 Sum_probs=20.7
Q ss_pred ceeecchhhhHHHHHHHHHHHHHHhh
Q 021081 152 PIYVNAKQYHGIIRRRKSRAKAVLEN 177 (317)
Q Consensus 152 PvyVNaKQy~~IlrRR~~Rak~e~~~ 177 (317)
-+|++-|...++.+||++.+++=+.+
T Consensus 156 W~~~gGk~l~GLv~RR~~E~~l~~~~ 181 (191)
T 1xjt_A 156 FVNSNGVPLRGLKIRREKERQLCLTG 181 (191)
T ss_dssp CCEETTEECHHHHHHHHHHHHHHHBT
T ss_pred HhhcCCEEehhHHHHHHHHHHHHhCC
Confidence 56677788999999999988776554
No 7
>1qfq_B N36, 36-MER N-terminal peptide of the N protein; bacteriophage lambda, antitermination, peptide-RNA-complex; NMR {Enterobacteria phage lambda} SCOP: j.9.5.1
Probab=7.49 E-value=1.9e+02 Score=19.42 Aligned_cols=15 Identities=40% Similarity=0.468 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHhhh
Q 021081 164 IRRRKSRAKAVLENK 178 (317)
Q Consensus 164 lrRR~~Rak~e~~~k 178 (317)
-|||+.|+...++=|
T Consensus 4 ~rrrerra~kqa~wk 18 (35)
T 1qfq_B 4 TRRRERRAEKQAQWK 18 (35)
T ss_dssp HHHHHHTHHHHHHHH
T ss_pred hHHHHHHHHHHhhhh
Confidence 378888876655543
No 8
>2k2w_A Recombination and DNA repair protein; BRCT domain, cell cycle checkpoint; NMR {Xenopus laevis}
Probab=6.20 E-value=1.5e+02 Score=24.66 Aligned_cols=16 Identities=38% Similarity=0.627 Sum_probs=12.0
Q ss_pred CCCCceeecchhhhHH
Q 021081 148 TDDGPIYVNAKQYHGI 163 (317)
Q Consensus 148 ~~~~PvyVNaKQy~~I 163 (317)
.+..=||.|+|||.+.
T Consensus 15 ~GKtFvFLn~KQ~kkl 30 (118)
T 2k2w_A 15 KDKVFLFLNAKQYKKL 30 (118)
T ss_dssp TTCEEEESCSSTHHHH
T ss_pred cCCEEEEeCHHHHHHH
Confidence 3445789999999764
No 9
>3gxv_A Replicative DNA helicase; hexameric helicase, primase, replication, ATP-binding, autocatalytic cleavage, DNA replication; 2.20A {Helicobacter pylori} PDB: 3gxv_D 3gxv_C
Probab=5.83 E-value=3.2e+02 Score=21.54 Aligned_cols=23 Identities=17% Similarity=0.138 Sum_probs=19.0
Q ss_pred ceeecchhhhHHHHHHHHHHHHH
Q 021081 152 PIYVNAKQYHGIIRRRKSRAKAV 174 (317)
Q Consensus 152 PvyVNaKQy~~IlrRR~~Rak~e 174 (317)
|--.|.+.|-+|+|.+..|.++-
T Consensus 89 ps~ani~~Ya~iV~e~s~~R~li 111 (123)
T 3gxv_A 89 SPIDNIEAYVEEIKNASIKRKLF 111 (123)
T ss_dssp CCCSCTHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH
Confidence 55579999999999988887764
No 10
>4f3m_A BH0337 protein; crispr, ferredoxin fold, endoribonuclease, RNA, RNA binding; 1.71A {Bacillus halodurans}
Probab=5.35 E-value=2.4e+02 Score=25.89 Aligned_cols=24 Identities=17% Similarity=0.303 Sum_probs=18.1
Q ss_pred cchhhhHHHHHHHHHHHHHHhhhhhhcCCCCcc
Q 021081 156 NAKQYHGIIRRRKSRAKAVLENKITRKRKPYMH 188 (317)
Q Consensus 156 NaKQy~~IlrRR~~Rak~e~~~kl~k~rk~Ylh 188 (317)
|+.-|..|++||.+|- ..++|||-
T Consensus 115 n~~Kh~~if~Rr~~~G---------~~~~pyLG 138 (238)
T 4f3m_A 115 NEGKHYSILQRSLKAG---------GRRDIFLG 138 (238)
T ss_dssp CHHHHHHHHHHHHHTT---------CSSCCBSS
T ss_pred CHHHHHHHHHHHHHCC---------CCCCCccc
Confidence 6778999999987763 23789973
Done!