Query 021081
Match_columns 317
No_of_seqs 150 out of 209
Neff 3.1
Searched_HMMs 13730
Date Mon Mar 25 12:28:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021081.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/021081hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v8fa_ c.26.1.4 (A:) Pantothe 9.4 33 0.0024 29.4 0.2 19 152-170 49-76 (276)
2 d1xjua_ d.2.1.3 (A:) Endolysin 9.0 87 0.0063 23.4 2.6 27 153-179 129-155 (158)
3 d1ihoa_ c.26.1.4 (A:) Pantothe 7.3 46 0.0034 28.6 0.2 10 152-161 54-63 (282)
4 d2a84a1 c.26.1.4 (A:3-288) Pan 6.4 50 0.0037 28.3 -0.0 11 152-162 63-73 (286)
5 d2je8a1 b.1.4.1 (A:220-330) Be 6.3 85 0.0062 21.7 1.2 16 28-43 74-90 (111)
6 d1at3a_ b.57.1.1 (A:) HSV-2 pr 5.8 1.5E+02 0.011 24.9 2.8 12 155-166 70-81 (231)
7 d2huja1 a.24.26.1 (A:1-120) Hy 5.2 2E+02 0.014 21.9 2.9 38 154-191 34-71 (120)
8 d1y7ua1 d.38.1.1 (A:8-171) Acy 4.9 2.8E+02 0.02 20.9 3.6 22 157-178 135-156 (164)
9 d1uwka_ e.51.1.1 (A:) Urocanat 4.3 60 0.0044 30.9 -1.0 22 287-311 345-366 (554)
10 d2zjrs1 b.53.1.1 (S:1-175) Rib 4.3 2E+02 0.015 22.3 2.4 18 150-167 29-46 (175)
No 1
>d1v8fa_ c.26.1.4 (A:) Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC) {Thermus thermophilus [TaxId: 274]}
Probab=9.44 E-value=33 Score=29.45 Aligned_cols=19 Identities=26% Similarity=0.489 Sum_probs=12.9
Q ss_pred ceeecchh---------hhHHHHHHHHH
Q 021081 152 PIYVNAKQ---------YHGIIRRRKSR 170 (317)
Q Consensus 152 PvyVNaKQ---------y~~IlrRR~~R 170 (317)
.|||||.| |.|-+..=.+.
T Consensus 49 SIFVNP~QF~~~eD~~~YPr~~~~D~~~ 76 (276)
T d1v8fa_ 49 SVFVNPLQFGPGEDYHRYPRDLERDRAL 76 (276)
T ss_dssp EECCCGGGCCTTSSTTTSCCCHHHHHHH
T ss_pred EEEecCccCCCcchhhccccchhhhHHH
Confidence 68999999 55655544333
No 2
>d1xjua_ d.2.1.3 (A:) Endolysin Lyz {Bacteriophage P1 [TaxId: 10678]}
Probab=9.05 E-value=87 Score=23.39 Aligned_cols=27 Identities=19% Similarity=0.306 Sum_probs=20.1
Q ss_pred eeecchhhhHHHHHHHHHHHHHHhhhh
Q 021081 153 IYVNAKQYHGIIRRRKSRAKAVLENKI 179 (317)
Q Consensus 153 vyVNaKQy~~IlrRR~~Rak~e~~~kl 179 (317)
+|.+-|-..++.+||++.+++=+++.+
T Consensus 129 ~~~~g~~~~GL~~RR~~E~~L~l~g~~ 155 (158)
T d1xjua_ 129 VNSNGVPLRGLKIRREKERQLCLTGLV 155 (158)
T ss_dssp CEETTEECHHHHHHHHHHHHHHHTTTS
T ss_pred HhcCCEEChhHHHHHHHHHHHHHcccc
Confidence 344455688999999999888777653
No 3
>d1ihoa_ c.26.1.4 (A:) Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC) {Escherichia coli [TaxId: 562]}
Probab=7.30 E-value=46 Score=28.56 Aligned_cols=10 Identities=40% Similarity=0.793 Sum_probs=8.2
Q ss_pred ceeecchhhh
Q 021081 152 PIYVNAKQYH 161 (317)
Q Consensus 152 PvyVNaKQy~ 161 (317)
.|||||.||.
T Consensus 54 SIFVNP~QF~ 63 (282)
T d1ihoa_ 54 SIFVNPMQFD 63 (282)
T ss_dssp EECCCGGGCS
T ss_pred EEEecCccCc
Confidence 5899998864
No 4
>d2a84a1 c.26.1.4 (A:3-288) Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC) {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=6.41 E-value=50 Score=28.33 Aligned_cols=11 Identities=36% Similarity=0.682 Sum_probs=8.9
Q ss_pred ceeecchhhhH
Q 021081 152 PIYVNAKQYHG 162 (317)
Q Consensus 152 PvyVNaKQy~~ 162 (317)
.|||||.||.-
T Consensus 63 SIFVNP~QF~~ 73 (286)
T d2a84a1 63 SIFVNPMQFGA 73 (286)
T ss_dssp EECCCCCCTTC
T ss_pred EEeecccccCc
Confidence 68999999654
No 5
>d2je8a1 b.1.4.1 (A:220-330) Beta-mannosidase, domains 2, 4 and 5 {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=6.29 E-value=85 Score=21.71 Aligned_cols=16 Identities=19% Similarity=0.686 Sum_probs=13.0
Q ss_pred CCCCCcc-ccCCCCCCC
Q 021081 28 SSAPWWS-SLGSQSVYG 43 (317)
Q Consensus 28 ~s~PWW~-~~G~q~~~~ 43 (317)
.+.-||- ++|.+.||.
T Consensus 74 ~p~LW~P~g~g~P~LY~ 90 (111)
T d2je8a1 74 NPVRWMPNGWGTPTLYD 90 (111)
T ss_dssp SCCCBCCTTSSCBCCEE
T ss_pred CccCcCCCCCCCCceEE
Confidence 3678996 899999986
No 6
>d1at3a_ b.57.1.1 (A:) HSV-2 protease {Herpes simplex virus type 2 [TaxId: 10310]}
Probab=5.84 E-value=1.5e+02 Score=24.88 Aligned_cols=12 Identities=8% Similarity=0.274 Sum_probs=10.7
Q ss_pred ecchhhhHHHHH
Q 021081 155 VNAKQYHGIIRR 166 (317)
Q Consensus 155 VNaKQy~~IlrR 166 (317)
||.+||-.||.+
T Consensus 70 Its~~fl~il~~ 81 (231)
T d1at3a_ 70 IACVQLERVLET 81 (231)
T ss_dssp ECCHHHHHHHHH
T ss_pred eccHHHHHHHHH
Confidence 789999999965
No 7
>d2huja1 a.24.26.1 (A:1-120) Hypothetical protein Lin2004 {Listeria innocua [TaxId: 1642]}
Probab=5.24 E-value=2e+02 Score=21.88 Aligned_cols=38 Identities=16% Similarity=0.262 Sum_probs=23.2
Q ss_pred eecchhhhHHHHHHHHHHHHHHhhhhhhcCCCCcccch
Q 021081 154 YVNAKQYHGIIRRRKSRAKAVLENKITRKRKPYMHHSR 191 (317)
Q Consensus 154 yVNaKQy~~IlrRR~~Rak~e~~~kl~k~rk~YlhESR 191 (317)
|-.-|=|-..+.+...+=+..+..-+...|-+|||++-
T Consensus 34 y~~VKPf~d~vd~~l~~W~~~a~~~i~~~rp~y~h~~Q 71 (120)
T d2huja1 34 YKDMKPFVDEAKRCADDFLELAIPWVNTERPPYLGELQ 71 (120)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCCHHH
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHhCcccCCHHH
Confidence 33444555555666555544444445568999999875
No 8
>d1y7ua1 d.38.1.1 (A:8-171) Acyl-coa hydrolase BC2038 {Bacillus cereus [TaxId: 1396]}
Probab=4.85 E-value=2.8e+02 Score=20.88 Aligned_cols=22 Identities=18% Similarity=0.101 Sum_probs=14.0
Q ss_pred chhhhHHHHHHHHHHHHHHhhh
Q 021081 157 AKQYHGIIRRRKSRAKAVLENK 178 (317)
Q Consensus 157 aKQy~~IlrRR~~Rak~e~~~k 178 (317)
.+.|..-.+||++|..++.+.+
T Consensus 135 ~~~~~~a~~r~~~R~~r~~~~~ 156 (164)
T d1y7ua1 135 KESHRIAVLRAEQRHIRKAESK 156 (164)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666677777766665544
No 9
>d1uwka_ e.51.1.1 (A:) Urocanate hydratase HutU {Pseudomonas putida [TaxId: 303]}
Probab=4.33 E-value=60 Score=30.91 Aligned_cols=22 Identities=23% Similarity=0.495 Sum_probs=16.6
Q ss_pred cccCCcccCCCcccccccccccccc
Q 021081 287 HSFSGIMDTGRGIVMPSQWVAAADN 311 (317)
Q Consensus 287 ~~~~~m~d~g~G~~~p~kW~aaa~~ 311 (317)
-.++.|.+-|-| ||.||+.+++
T Consensus 345 ~yirPlFc~G~G---PFRWValSGd 366 (554)
T d1uwka_ 345 AYIRPLFCRGVG---PFRWAALSGE 366 (554)
T ss_dssp HTTHHHHTTTCB---CEEEEETTCC
T ss_pred HHhHHHhhcCcC---CceeeeccCC
Confidence 455667788877 9999998754
No 10
>d2zjrs1 b.53.1.1 (S:1-175) Ribosomal protein TL5 (general stress protein CTC) {Deinococcus radiodurans [TaxId: 1299]}
Probab=4.33 E-value=2e+02 Score=22.35 Aligned_cols=18 Identities=11% Similarity=0.314 Sum_probs=14.3
Q ss_pred CCceeecchhhhHHHHHH
Q 021081 150 DGPIYVNAKQYHGIIRRR 167 (317)
Q Consensus 150 ~~PvyVNaKQy~~IlrRR 167 (317)
..+|.|+.|++.++|++.
T Consensus 29 ~~~i~v~~~~l~k~l~~~ 46 (175)
T d2zjrs1 29 NVSFALDRKAFDRAFRQQ 46 (175)
T ss_dssp CCCCBCCHHHHHHHHHHH
T ss_pred CEEEEEcHHHHHHHHHhc
Confidence 357889999999998653
Done!