BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 021082
         (317 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q7VG78|GUAA_HELHP Probable GMP synthase [glutamine-hydrolyzing] OS=Helicobacter
           hepaticus (strain ATCC 51449 / 3B1) GN=guaA PE=3 SV=1
          Length = 1375

 Score =  164 bits (416), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 78/197 (39%), Positives = 115/197 (58%), Gaps = 5/197 (2%)

Query: 111 QSQDSCCG--ELKRCNWITKNSD---KVYVAFHDECWGVPVYDDNQLFELLALSGMLMDY 165
           ++QDS  G  E  RC W T   +   K+Y  +HD  WG P+++D +LFE L L G     
Sbjct: 774 EAQDSNEGVREKVRCAWATDKDEAARKLYEDYHDTEWGEPLHEDKKLFEHLVLEGFQAGL 833

Query: 166 NWTEILKRKELFREAFGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIVK 225
           +W  ILK++E FR AF  FDP  VA   E +I E+  N  I+    ++   + NAK  + 
Sbjct: 834 SWITILKKREAFRVAFDDFDPHIVANYDEDKIKELMRNEGIIRNRAKIEAAIINAKAFMA 893

Query: 226 ILNEFGSFSSFMWGYVNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGPVIVYS 285
           +  EFGSF  ++WG+V  KP+IN F    ++P  +P ++ I++DL KRGF+ VG   +Y+
Sbjct: 894 VQREFGSFDKYIWGFVGGKPIINAFESIADLPASTPLSDKIAKDLKKRGFKFVGTTTMYA 953

Query: 286 FMQAAGLTIDHLVDCFR 302
            MQ+ G+  DHL  CF+
Sbjct: 954 MMQSIGMVNDHLTSCFK 970


>sp|P44321|3MGA_HAEIN DNA-3-methyladenine glycosylase OS=Haemophilus influenzae (strain
           ATCC 51907 / DSM 11121 / KW20 / Rd) GN=tag PE=3 SV=1
          Length = 185

 Score =  147 bits (370), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 69/179 (38%), Positives = 107/179 (59%), Gaps = 2/179 (1%)

Query: 122 RCNWITKNSDKVYVAFHDECWGVPVYDDNQLFELLALSGMLMDYNWTEILKRKELFREAF 181
           RC W+ + S  +Y+ +HD+ WG P +D  +LFE + L G     +W  +LK++E +REAF
Sbjct: 4   RCPWVGEQS--IYIDYHDKEWGKPEFDSQKLFEKICLEGQQAGLSWITVLKKRESYREAF 61

Query: 182 GGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIVKILNEFGSFSSFMWGYV 241
             FDPK +AKM   +I     N+ ++    ++  IV NAK  + +     +FS F+W +V
Sbjct: 62  HQFDPKKIAKMTALDIDACMQNSGLIRHRAKLEAIVKNAKAYLAMEKCGENFSDFIWSFV 121

Query: 242 NFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGPVIVYSFMQAAGLTIDHLVDC 300
           N KP++N     R+VP ++  ++A+S+ L KRGF  +G    Y+FMQ+ GL  DHL DC
Sbjct: 122 NHKPIVNDVPDLRSVPTKTEVSKALSKALKKRGFVFIGETTCYAFMQSMGLVDDHLNDC 180


>sp|P05100|3MG1_ECOLI DNA-3-methyladenine glycosylase 1 OS=Escherichia coli (strain K12)
           GN=tag PE=1 SV=1
          Length = 187

 Score =  146 bits (369), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 65/184 (35%), Positives = 108/184 (58%), Gaps = 2/184 (1%)

Query: 120 LKRCNWITKNSDKVYVAFHDECWGVPVYDDNQLFELLALSGMLMDYNWTEILKRKELFRE 179
           ++RC W+++  D +Y+A+HD  WGVP  D  +LFE++ L G     +W  +LK++E +R 
Sbjct: 1   MERCGWVSQ--DPLYIAYHDNEWGVPETDSKKLFEMICLEGQQAGLSWITVLKKRENYRA 58

Query: 180 AFGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIVKILNEFGSFSSFMWG 239
            F  FDP  VA M E+++  +  +  I+    +++ I+ NA+  +++      F  F+W 
Sbjct: 59  CFHQFDPVKVAAMQEEDVERLVQDAGIIRHRGKIQAIIGNARAYLQMEQNGEPFVDFVWS 118

Query: 240 YVNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGPVIVYSFMQAAGLTIDHLVD 299
           +VN +P + +      +P  +  ++A+S+ L KRGF+ VG  I YSFMQA GL  DH+V 
Sbjct: 119 FVNHQPQVTQATTLSEIPTSTSASDALSKALKKRGFKFVGTTICYSFMQACGLVNDHVVG 178

Query: 300 CFRY 303
           C  Y
Sbjct: 179 CCCY 182


>sp|O94508|CWF11_SCHPO Pre-mRNA-splicing factor cwf11 OS=Schizosaccharomyces pombe (strain
           972 / ATCC 24843) GN=cwf11 PE=1 SV=1
          Length = 1284

 Score = 34.3 bits (77), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 27/113 (23%), Positives = 49/113 (43%), Gaps = 11/113 (9%)

Query: 203 NTAIMLAECRVRCIVD------NAKCIVKILNEFGSFSSFMWGYVNFKPMINKFRYPRNV 256
           N  +   E  ++CI++      +AK ++ +L+E   F +F+W  VN +  +N       +
Sbjct: 22  NEGVEFQETMLQCILEAVIVSKDAKQVLSLLHELKLFENFLWQRVNTEMSLNHINLTCML 81

Query: 257 PLRSPKAEAISRDLLKRG-----FRLVGPVIVYSFMQAAGLTIDHLVDCFRYS 304
            L   K E I+ DL+        F  V  V +   +      I  +  CF++S
Sbjct: 82  LLYKSKYEYITWDLIDENRFQLFFEKVIEVSLSLNLSEVVYMIQFITLCFQFS 134


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.319    0.133    0.395 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 111,418,616
Number of Sequences: 539616
Number of extensions: 4413301
Number of successful extensions: 49054
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 241
Number of HSP's that attempted gapping in prelim test: 35830
Number of HSP's gapped (non-prelim): 9088
length of query: 317
length of database: 191,569,459
effective HSP length: 117
effective length of query: 200
effective length of database: 128,434,387
effective search space: 25686877400
effective search space used: 25686877400
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)