Query 021082
Match_columns 317
No_of_seqs 147 out of 1194
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 12:29:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021082.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021082hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jg6_A DNA-3-methyladenine gly 100.0 4.7E-91 1.6E-95 622.5 18.6 184 120-305 1-184 (186)
2 2ofk_A 3-methyladenine DNA gly 100.0 5.7E-90 2E-94 614.3 19.0 182 120-303 1-182 (183)
3 3n0u_A Probable N-glycosylase/ 97.5 0.00025 8.7E-09 64.1 7.6 106 148-292 46-152 (219)
4 1kea_A Possible G-T mismatches 96.2 0.03 1E-06 50.0 10.5 101 152-290 35-135 (221)
5 1orn_A Endonuclease III; DNA r 96.2 0.055 1.9E-06 48.5 12.2 69 152-224 33-101 (226)
6 3n5n_X A/G-specific adenine DN 95.8 0.14 4.7E-06 48.1 13.3 103 149-289 46-148 (287)
7 2abk_A Endonuclease III; DNA-r 95.7 0.045 1.5E-06 48.3 9.2 71 151-225 28-98 (211)
8 2h56_A DNA-3-methyladenine gly 95.7 0.11 3.6E-06 46.9 11.6 130 130-292 29-161 (233)
9 1kg2_A A/G-specific adenine gl 95.4 0.12 4E-06 46.1 10.8 101 151-290 29-129 (225)
10 2yg9_A DNA-3-methyladenine gly 95.3 0.11 3.7E-06 46.7 10.3 128 130-290 38-166 (225)
11 1pu6_A 3-methyladenine DNA gly 95.1 0.15 5.2E-06 45.4 10.5 107 152-290 30-141 (218)
12 3fhg_A Mjogg, N-glycosylase/DN 94.9 0.092 3.2E-06 46.4 8.4 112 147-292 28-139 (207)
13 3s6i_A DNA-3-methyladenine gly 94.1 0.31 1E-05 43.8 10.2 128 130-292 25-162 (228)
14 4b21_A Probable DNA-3-methylad 93.9 0.41 1.4E-05 43.2 10.5 130 131-292 37-173 (232)
15 3fsp_A A/G-specific adenine gl 93.6 0.56 1.9E-05 44.4 11.3 103 149-290 36-138 (369)
16 3fhf_A Mjogg, N-glycosylase/DN 92.4 0.55 1.9E-05 42.2 9.0 107 147-292 39-147 (214)
17 2jhn_A ALKA, 3-methyladenine D 91.4 0.88 3E-05 42.1 9.4 123 131-291 95-232 (295)
18 3i0w_A 8-oxoguanine-DNA-glycos 89.0 2 6.9E-05 39.7 9.7 128 131-293 95-235 (290)
19 4e9f_A Methyl-CPG-binding doma 88.6 0.81 2.8E-05 39.4 6.2 56 153-210 32-87 (161)
20 2d3d_A VTS1 protein; RNA bindi 76.1 4.9 0.00017 31.9 5.6 47 175-223 31-77 (88)
21 1mpg_A ALKA, 3-methyladenine D 72.3 11 0.00036 34.5 7.6 122 142-298 103-241 (282)
22 2b6g_A VTS1P; alpha-helix, pen 71.8 8.2 0.00028 32.1 6.1 54 167-223 55-108 (119)
23 3h8m_A Ephrin type-A receptor 70.4 6.2 0.00021 30.8 4.9 42 175-220 38-84 (90)
24 1v38_A SAM-domain protein sams 70.0 4.9 0.00017 30.3 4.1 43 175-219 25-70 (78)
25 2kso_A Ephrin type-A receptor 68.9 7.6 0.00026 29.5 5.0 45 175-221 29-76 (82)
26 1ucv_A Ephrin type-A receptor 68.2 9.3 0.00032 28.8 5.3 46 175-222 20-68 (81)
27 1b4f_A EPHB2; SAM domain, EPH 68.1 7.2 0.00025 29.2 4.7 47 175-223 24-73 (82)
28 2xhi_A N-glycosylase/DNA lyase 68.0 16 0.00053 35.0 8.1 130 131-292 132-276 (360)
29 1b0x_A Protein (EPHA4 receptor 67.2 7.6 0.00026 30.1 4.8 46 175-222 39-87 (94)
30 2es6_A VTS1P; SAM domain, prot 66.3 8.5 0.00029 31.3 5.0 46 175-222 44-89 (101)
31 2p5k_A Arginine repressor; DNA 66.3 6.4 0.00022 27.0 3.8 30 263-293 22-51 (64)
32 3kka_C Ephrin type-A receptor 63.7 7.9 0.00027 29.9 4.2 41 175-219 34-79 (86)
33 1x40_A ARAP2; ASAP-related pro 63.7 5.7 0.00019 30.8 3.4 42 175-220 28-74 (91)
34 2e8n_A Ephrin type-A receptor 63.5 6.3 0.00022 30.2 3.6 46 175-222 25-73 (88)
35 2eao_A Ephrin type-B receptor 63.1 9.3 0.00032 29.9 4.6 45 175-221 35-82 (99)
36 3hil_A Ephrin type-A receptor 62.8 5.2 0.00018 30.7 3.0 40 175-218 36-80 (82)
37 3k1r_B Usher syndrome type-1G 59.8 19 0.00066 26.8 5.7 43 175-222 19-61 (74)
38 2dl0_A SAM and SH3 domain-cont 57.6 6.5 0.00022 31.1 2.8 43 175-219 36-81 (97)
39 3sei_A Caskin-1; SAM domain, p 52.0 11 0.00037 31.7 3.4 43 175-219 23-67 (149)
40 2k4p_A Phosphatidylinositol-3, 49.6 22 0.00076 27.4 4.6 42 175-218 39-83 (86)
41 2qkq_A Ephrin type-B receptor 42.8 32 0.0011 25.7 4.5 45 175-221 28-75 (83)
42 2kg5_A ARF-GAP, RHO-GAP domain 42.7 30 0.001 27.3 4.5 43 175-219 39-84 (100)
43 1oxj_A RNA-binding protein sma 41.6 28 0.00095 30.8 4.5 44 175-221 20-63 (173)
44 2lfe_A E3 ubiquitin-protein li 39.5 6.8 0.00023 33.4 0.3 25 36-60 14-44 (138)
45 2lc0_A Putative uncharacterize 37.8 11 0.00037 31.5 1.2 25 260-284 83-107 (132)
46 2yvq_A Carbamoyl-phosphate syn 36.6 24 0.00082 29.1 3.1 32 261-292 37-68 (143)
47 3sei_A Caskin-1; SAM domain, p 36.5 57 0.0019 27.2 5.5 47 175-223 92-141 (149)
48 2cme_A ORF-9B, ORF13, hypothet 35.3 9.5 0.00032 29.2 0.4 19 34-53 20-38 (78)
49 2lmr_A ODIN, ankyrin repeat an 33.3 22 0.00076 28.3 2.3 43 175-219 42-89 (101)
50 2ovk_B RLC, myosin regulatory 31.6 55 0.0019 24.9 4.3 61 174-241 15-75 (153)
51 2gle_A Neurabin-1; SAM domain, 29.7 1.4E+02 0.0049 21.3 6.1 44 175-222 22-69 (74)
52 1kdx_B CREB; complex (transcri 28.4 7.9 0.00027 24.9 -0.9 17 168-184 7-23 (28)
53 2ean_A Connector enhancer of k 28.3 94 0.0032 22.9 5.0 39 182-222 37-75 (83)
54 2p4g_A Hypothetical protein; p 27.9 43 0.0015 30.1 3.5 31 264-295 177-211 (270)
55 1eh2_A EPS15; calcium binding, 26.9 21 0.00072 27.8 1.2 42 163-205 3-44 (106)
56 3bs5_B Connector enhancer of k 26.2 1.3E+02 0.0043 21.9 5.3 43 177-221 26-70 (80)
57 2b1u_A Calmodulin-like protein 24.3 32 0.0011 22.8 1.6 34 174-207 5-38 (71)
58 2ktg_A Calmodulin, putative; e 23.7 28 0.00096 24.2 1.2 45 173-217 12-56 (85)
59 2lv7_A Calcium-binding protein 23.1 19 0.00065 27.5 0.2 44 175-218 36-79 (100)
60 2azn_A HTP reductase, putative 23.0 60 0.0021 27.8 3.4 31 264-295 132-166 (219)
61 2xw6_A MGS, methylglyoxal synt 21.4 60 0.002 27.1 3.0 32 261-292 16-50 (134)
62 1k94_A Grancalcin; penta-EF-ha 21.1 42 0.0014 26.1 1.9 50 170-219 65-114 (165)
63 2mys_B Myosin; muscle protein, 20.4 40 0.0014 26.1 1.6 61 173-240 23-84 (166)
No 1
>2jg6_A DNA-3-methyladenine glycosidase; 3-methyladenine-DNA-glycosylase-I, hydrolase; 1.70A {Staphylococcus aureus} PDB: 4aia_A* 4ai5_A* 4ai4_A
Probab=100.00 E-value=4.7e-91 Score=622.46 Aligned_cols=184 Identities=38% Similarity=0.698 Sum_probs=180.2
Q ss_pred CccccCccCCCChhHhhhhhhCCCccccChHHHHHHHHHHHhhccccHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHH
Q 021082 120 LKRCNWITKNSDKVYVAFHDECWGVPVYDDNQLFELLALSGMLMDYNWTEILKRKELFREAFGGFDPKSVAKMGEKEILE 199 (317)
Q Consensus 120 ~~RC~Wa~~~~dply~~YHD~EWG~Pv~DDr~LFE~L~LE~fQAGLSW~tILkKR~~fr~AF~~FD~~~VA~~~eedie~ 199 (317)
|+||.|++ +||+|++|||+|||+|+|||+.|||+||||||||||||.|||+||++||+||+||||++||.|+|++|++
T Consensus 1 m~RC~W~~--~~ply~~YHD~EWG~Pv~Dd~~LFE~L~LEgfQAGLSW~tIL~KRe~fR~AF~~FD~~~VA~~~e~dve~ 78 (186)
T 2jg6_A 1 MNECAFGT--KDPVYLNYHDHVWGQPLYDSKALFKLLALESQHAGLSWLTILKKKEAYEEAFYDFEPEKVAQMTAQDIDR 78 (186)
T ss_dssp CTTTTTTC--CCHHHHHHHHHTTTSCCCCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTGGGCHHHHTTCCHHHHHH
T ss_pred CCCCCCCC--CChHHHHHHHhccCCcccCcHHHHHHHHHHHHhccCCHHHHHHhHHHHHHHHcCCCHHHHhCCCHHHHHH
Confidence 57999996 5899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCcchhchhhHHHHHHhHHHHHHHHHhcCCHHHhccccCCCccccCCCCCCCCCCCCCHHHHHHHHHHHHcCCcccC
Q 021082 200 ISSNTAIMLAECRVRCIVDNAKCIVKILNEFGSFSSFMWGYVNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVG 279 (317)
Q Consensus 200 L~~d~~IIRnr~KI~AVi~NAr~il~i~~E~GSF~~ylWsfv~~kpi~n~~~~~~~vP~~t~lS~~lsKdLKkrGFkFVG 279 (317)
||+|++|||||+||+|||+|||++++|++|+|||++|||+||+++||+|++.+..++|++||+|++|||+||||||+|||
T Consensus 79 Ll~d~gIIRnr~KI~A~i~NA~~~l~i~~e~gsf~~ylW~fv~~~p~~~~~~~~~~vp~~t~~S~~lsKdLKkrGFkFvG 158 (186)
T 2jg6_A 79 LMTFPNIVHHRKKLEAIVNQAQGYLKIEQAYGSFSKFLWSYVNGKPKDLQYEHASDRITVDDTATQLSKDLKQYGFKFLG 158 (186)
T ss_dssp HTTCTTSCCCHHHHHHHHHHHHHHHHHHHHHSCHHHHHHGGGTTSCEECCCCSGGGCCSCCHHHHHHHHHHHTTTCCSCC
T ss_pred HhcCccchhhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHhcCCCCCccCCccchhhcCCCCHHHHHHHHHHHHCCCeeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHhccccccccccccchh
Q 021082 280 PVIVYSFMQAAGLTIDHLVDCFRYSE 305 (317)
Q Consensus 280 PttvysFMQAvG~vnDHl~~C~r~~~ 305 (317)
||||||||||+||||||+++|+++.+
T Consensus 159 pt~~YafmQA~G~vndH~~~C~~~~~ 184 (186)
T 2jg6_A 159 PVTVFSFLEAAGLYDAHLKDCPSKPK 184 (186)
T ss_dssp HHHHHHHHHHTTSEECCCTTCTTCCC
T ss_pred hHHHHHHHHHhcccCccccCccccCC
Confidence 99999999999999999999998743
No 2
>2ofk_A 3-methyladenine DNA glycosylase I, constitutive; DNA repair, base excision, helix-hairpin-helix, hydrolase; HET: PGE; 1.50A {Salmonella typhi} PDB: 2ofi_A* 1lmz_A 1nku_A 1p7m_A*
Probab=100.00 E-value=5.7e-90 Score=614.33 Aligned_cols=182 Identities=36% Similarity=0.784 Sum_probs=178.7
Q ss_pred CccccCccCCCChhHhhhhhhCCCccccChHHHHHHHHHHHhhccccHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHH
Q 021082 120 LKRCNWITKNSDKVYVAFHDECWGVPVYDDNQLFELLALSGMLMDYNWTEILKRKELFREAFGGFDPKSVAKMGEKEILE 199 (317)
Q Consensus 120 ~~RC~Wa~~~~dply~~YHD~EWG~Pv~DDr~LFE~L~LE~fQAGLSW~tILkKR~~fr~AF~~FD~~~VA~~~eedie~ 199 (317)
|+||.|++ +||+|++|||+|||+|+|||+.|||+||||||||||||.|||+||++||+||+||||++||.|+|++|++
T Consensus 1 ~~RC~W~~--~~ply~~YHD~EWG~P~~Dd~~LFE~L~Le~fQAGLSW~tIL~KRe~fr~AF~~Fd~~~VA~~~e~~ve~ 78 (183)
T 2ofk_A 1 MQRCDWVS--QDPLYIAYHDNEWGVPETDSRKLFEMICLEGQQAGLSWITVLKKRENYRACFHQFDPIRIAAMQEEDVER 78 (183)
T ss_dssp -CCCTTCC--SCHHHHHHHHHTTTCCCCCHHHHHHHHHHHHHTTTSCHHHHHHTHHHHHHHTGGGCHHHHHTCCHHHHHH
T ss_pred CCCCCCCC--CChHHHHHHHhccCCcccCcHHHHHHHHHHHHhccCCHHHHHHhHHHHHHHHcCCCHHHHcCCCHHHHHH
Confidence 46999996 5899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCcchhchhhHHHHHHhHHHHHHHHHhcCCHHHhccccCCCccccCCCCCCCCCCCCCHHHHHHHHHHHHcCCcccC
Q 021082 200 ISSNTAIMLAECRVRCIVDNAKCIVKILNEFGSFSSFMWGYVNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVG 279 (317)
Q Consensus 200 L~~d~~IIRnr~KI~AVi~NAr~il~i~~E~GSF~~ylWsfv~~kpi~n~~~~~~~vP~~t~lS~~lsKdLKkrGFkFVG 279 (317)
||+|++|||||+||+|||+||+++++|++|+|||++|||+||+++||+|++.+..++|++||+|++|||+||||||+|||
T Consensus 79 Ll~d~~IIRnr~KI~A~i~NA~~~l~i~~e~Gsf~~ylW~fv~~~pi~~~~~~~~~vp~~t~~S~~lsk~LKkrGfkFvG 158 (183)
T 2ofk_A 79 LLQNTGIIRHRGKIQAIISNARAWLAMEQNGESFADFVWSFVDGQPQITQAASLDKIPTSTPASDALAKALKKRGFKFVG 158 (183)
T ss_dssp HTTCTTSCCCHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHTTTTSCEECCCSSGGGSCSCCHHHHHHHHHHHHTTCCSCC
T ss_pred HhcCCcchhhHHHHHHHHHHHHHHHHHHHhcCCHHHHHhhcCCCCCccCCccchhhccCCCHHHHHHHHHHHhCCCeecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHhccccccccccccc
Q 021082 280 PVIVYSFMQAAGLTIDHLVDCFRY 303 (317)
Q Consensus 280 PttvysFMQAvG~vnDHl~~C~r~ 303 (317)
||||||||||+||||||+++|+++
T Consensus 159 pT~~yafmQA~G~VndH~~~C~~~ 182 (183)
T 2ofk_A 159 TTICYSFMQACGLVNDHITGCFCH 182 (183)
T ss_dssp HHHHHHHHHHTTSEECCCTTSTTC
T ss_pred hHHHHHHHHHcCcccCcccCCCCC
Confidence 999999999999999999999986
No 3
>3n0u_A Probable N-glycosylase/DNA lyase; structural genomics, ISFI, DNA repair, 8-oxoguanine, base EX repair, PSI-2, protein structure initiative; 1.50A {Thermotoga maritima}
Probab=97.45 E-value=0.00025 Score=64.14 Aligned_cols=106 Identities=15% Similarity=0.209 Sum_probs=82.2
Q ss_pred ChHHHHHHHHHHHhhccccHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhhCCCcchh-chhhHHHHHHhHHHHHHH
Q 021082 148 DDNQLFELLALSGMLMDYNWTEILKRKELFREAFGGFDPKSVAKMGEKEILEISSNTAIML-AECRVRCIVDNAKCIVKI 226 (317)
Q Consensus 148 DDr~LFE~L~LE~fQAGLSW~tILkKR~~fr~AF~~FD~~~VA~~~eedie~L~~d~~IIR-nr~KI~AVi~NAr~il~i 226 (317)
.+.-.||.|+..++.+.-+|..+.+-.+.+ |+.++.+++++|++++...| +| .+.|.+.++++|+.+
T Consensus 46 ~~~~~fe~Lv~~ILsqqts~~~~~~a~~~L--------p~~l~~~~~eeL~~~Ir~~G-~Rf~~~KA~~I~~~a~~i--- 113 (219)
T 3n0u_A 46 TEEDLFCELSFCVLTANWSAEGGIRAQKEI--------GKGFVHLPLEELAEKLREVG-HRYPQKRAEFIVENRKLL--- 113 (219)
T ss_dssp CHHHHHHHHHHHHHTTTSCHHHHHHHHHHH--------TTHHHHCCHHHHHHHHHHTT-CSSHHHHHHHHHHHGGGT---
T ss_pred CCCCHHHHHHHHHHhCCCCHHHHHHHHHHH--------HHHHHcCCHHHHHHHHHHhc-chHHHHHHHHHHHHHHHH---
Confidence 567799999999999999999988755555 78999999999999999888 46 778999999999876
Q ss_pred HHhcCCHHHhccccCCCccccCCCCCCCCCCCCCHHHHHHHHHHHHcCCcccChhhHHHHHHHhcc
Q 021082 227 LNEFGSFSSFMWGYVNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGPVIVYSFMQAAGL 292 (317)
Q Consensus 227 ~~E~GSF~~ylWsfv~~kpi~n~~~~~~~vP~~t~lS~~lsKdLKkrGFkFVGPttvysFMQAvG~ 292 (317)
|+|.+.. ++ + ....-++|.+ .++-|||.|+..||.-.|.
T Consensus 114 ----g~l~~~~----~~-~-----------------~~~~r~~L~~-~l~GVG~kTA~~vL~~~g~ 152 (219)
T 3n0u_A 114 ----GKLKNLV----KG-D-----------------PFQSREFLVR-NAKGIGWKEASHFLRNTGV 152 (219)
T ss_dssp ----TTHHHHH----HS-C-----------------HHHHHHHHHH-HSTTCCHHHHHHHHHTTTC
T ss_pred ----HHHHHHh----cC-C-----------------cHHHHHHHHH-hCCCCCHHHHHHHHHHcCC
Confidence 4554443 11 1 1123344552 3899999999999987776
No 4
>1kea_A Possible G-T mismatches repair enzyme; DNA repair, DNA glycosylase, DNA mismatch, methylation; 2.00A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.96.1.2
Probab=96.24 E-value=0.03 Score=49.98 Aligned_cols=101 Identities=17% Similarity=0.194 Sum_probs=79.7
Q ss_pred HHHHHHHHHhhccccHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhhCCCcchhchhhHHHHHHhHHHHHHHHHhcC
Q 021082 152 LFELLALSGMLMDYNWTEILKRKELFREAFGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIVKILNEFG 231 (317)
Q Consensus 152 LFE~L~LE~fQAGLSW~tILkKR~~fr~AF~~FD~~~VA~~~eedie~L~~d~~IIRnr~KI~AVi~NAr~il~i~~E~G 231 (317)
.||.|+-+++-.-.+|..+.+-...|.+.| .+|+.|+..++++|++++..-|.- +.|.+.++.=|+.+.+ ++|
T Consensus 35 pfe~lv~~IlsQqts~~~~~~~~~~l~~~f--ptp~~la~a~~e~l~~~i~~~G~~--~~KA~~l~~~a~~i~~---~~~ 107 (221)
T 1kea_A 35 PYVILITEILLRRTTAGHVKKIYDKFFVKY--KCFEDILKTPKSEIAKDIKEIGLS--NQRAEQLKELARVVIN---DYG 107 (221)
T ss_dssp HHHHHHHHHHTTTSCHHHHHHHHHHHHHHC--CSHHHHHHSCHHHHHHHTGGGSCH--HHHHHHHHHHHHHHHH---HHT
T ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHHC--CCHHHHHCCCHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHH---HhC
Confidence 799999999999999999999999998887 579999999999999999888876 4577888888887754 322
Q ss_pred CHHHhccccCCCccccCCCCCCCCCCCCCHHHHHHHHHHHHcCCcccChhhHHHHHHHh
Q 021082 232 SFSSFMWGYVNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGPVIVYSFMQAA 290 (317)
Q Consensus 232 SF~~ylWsfv~~kpi~n~~~~~~~vP~~t~lS~~lsKdLKkrGFkFVGPttvysFMQAv 290 (317)
+ ++|. .-++|. .++-|||.|+..+|.-+
T Consensus 108 g----------------------~~p~-------~~~~L~--~lpGIG~~TA~~il~~~ 135 (221)
T 1kea_A 108 G----------------------RVPR-------NRKAIL--DLPGVGKYTCAAVMCLA 135 (221)
T ss_dssp T----------------------SCCS-------CHHHHH--TSTTCCHHHHHHHHHHT
T ss_pred C----------------------CchH-------HHHHHH--hCCCCcHHHHHHHHHHh
Confidence 1 1231 112454 38899999999888654
No 5
>1orn_A Endonuclease III; DNA repair, DNA glycosylase, [4Fe-4S] cluster, iron-sulfur cluster, hydrolase/DNA complex; HET: PED; 1.70A {Geobacillus stearothermophilus} SCOP: a.96.1.1 PDB: 1orp_A* 1p59_A*
Probab=96.23 E-value=0.055 Score=48.52 Aligned_cols=69 Identities=14% Similarity=0.121 Sum_probs=60.8
Q ss_pred HHHHHHHHHhhccccHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhhCCCcchhchhhHHHHHHhHHHHH
Q 021082 152 LFELLALSGMLMDYNWTEILKRKELFREAFGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIV 224 (317)
Q Consensus 152 LFE~L~LE~fQAGLSW~tILkKR~~fr~AF~~FD~~~VA~~~eedie~L~~d~~IIRnr~KI~AVi~NAr~il 224 (317)
.||.|+-+++-.-.+|..+.+-...|.++|- +|+.++..++++|++++..-|.-+ .|.+.++.=|+.+.
T Consensus 33 pfe~Lv~~IlsQqts~~~v~~~~~~l~~~fp--t~~~la~a~~~~l~~~i~~~G~~~--~KA~~l~~~a~~i~ 101 (226)
T 1orn_A 33 PFELLIAVVLSAQCTDALVNKVTKRLFEKYR--TPHDYIAVPLEELEQDIRSIGLYR--NKARNIQKLCAMLI 101 (226)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHHHHCC--SHHHHHSSCHHHHHHHTGGGSSHH--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHHCC--CHHHHHcCCHHHHHHHHHHcCChH--HHHHHHHHHHHHHH
Confidence 5999999999999999999999999988874 899999999999999998888765 57777887787775
No 6
>3n5n_X A/G-specific adenine DNA glycosylase; alpha-helices, helix-hairpin-helix motif, iron-sulfur cluste hydrolase; 2.30A {Homo sapiens}
Probab=95.80 E-value=0.14 Score=48.11 Aligned_cols=103 Identities=15% Similarity=0.204 Sum_probs=80.3
Q ss_pred hHHHHHHHHHHHhhccccHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhhCCCcchhchhhHHHHHHhHHHHHHHHH
Q 021082 149 DNQLFELLALSGMLMDYNWTEILKRKELFREAFGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIVKILN 228 (317)
Q Consensus 149 Dr~LFE~L~LE~fQAGLSW~tILkKR~~fr~AF~~FD~~~VA~~~eedie~L~~d~~IIRnr~KI~AVi~NAr~il~i~~ 228 (317)
.+-.||.|+-+++-.-.+|..|.+-...|.+.|- +|+.+|..++++|++++.--|.-+ |.+.+..=|+.+.+
T Consensus 46 ~~dpfe~LVs~ILsQQts~~~v~~~~~rL~~~fp--tpe~La~a~~eel~~~ir~lG~~~---KA~~L~~~A~~i~~--- 117 (287)
T 3n5n_X 46 DRRAYAVWVSEVMLQQTQVATVINYYTGWMQKWP--TLQDLASASLEEVNQLWAGLGYYS---RGRRLQEGARKVVE--- 117 (287)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC--SHHHHHTSCHHHHHHHHTTSSCHH---HHHHHHHHHHHHHH---
T ss_pred CCCHHHHHHHHHHhCCCcHHHHHHHHHHHHHHCC--CHHHHHcCCHHHHHHHHHHcCCHH---HHHHHHHHHHHHHH---
Confidence 4678999999999999999999999999988875 899999999999999999888863 78888888887753
Q ss_pred hcCCHHHhccccCCCccccCCCCCCCCCCCCCHHHHHHHHHHHHcCCcccChhhHHHHHHH
Q 021082 229 EFGSFSSFMWGYVNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGPVIVYSFMQA 289 (317)
Q Consensus 229 E~GSF~~ylWsfv~~kpi~n~~~~~~~vP~~t~lS~~lsKdLKkrGFkFVGPttvysFMQA 289 (317)
++|+ ++|.. .++|.+. ++-|||.|+..+|.-
T Consensus 118 ~~~g----------------------~~p~~-------~~~Ll~~-LpGIG~kTA~~iL~~ 148 (287)
T 3n5n_X 118 ELGG----------------------HMPRT-------AETLQQL-LPGVGRYTAGAIASI 148 (287)
T ss_dssp HSTT----------------------CCCSS-------HHHHHHH-STTCCHHHHHHHHHH
T ss_pred HhCC----------------------CCcHH-------HHHHHHH-cCCCCHHHHHHHHHH
Confidence 4432 12221 1234331 578999999888754
No 7
>2abk_A Endonuclease III; DNA-repair, DNA glycosylase; 1.85A {Escherichia coli} SCOP: a.96.1.1
Probab=95.72 E-value=0.045 Score=48.28 Aligned_cols=71 Identities=11% Similarity=0.171 Sum_probs=58.8
Q ss_pred HHHHHHHHHHhhccccHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhhCCCcchhchhhHHHHHHhHHHHHH
Q 021082 151 QLFELLALSGMLMDYNWTEILKRKELFREAFGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIVK 225 (317)
Q Consensus 151 ~LFE~L~LE~fQAGLSW~tILkKR~~fr~AF~~FD~~~VA~~~eedie~L~~d~~IIRnr~KI~AVi~NAr~il~ 225 (317)
-.||.|+-+++-.-.+|..|.+-.+.+.+.| .+|+.++..++++|++++..-|.- +.|.+.++.=|+.+.+
T Consensus 28 ~pfe~lv~~Il~qqts~~~v~~~~~~l~~~f--pt~~~la~a~~~~l~~~i~~~G~~--~~KA~~l~~~a~~~~~ 98 (211)
T 2abk_A 28 SPFELLIAVLLSAQATDVSVNKATAKLYPVA--NTPAAMLELGVEGVKTYIKTIGLY--NSKAENIIKTCRILLE 98 (211)
T ss_dssp SHHHHHHHHHHTTTSCHHHHHHHHHHHTTTC--CSHHHHHHHHHHHHHHHHTTSTTH--HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCCHHHHHHHHHHHHHHC--CCHHHHHCCCHHHHHHHHHHcCCC--hHHHHHHHHHHHHHHH
Confidence 4799999999999999999988777665544 469999999999999999888874 5678888888887753
No 8
>2h56_A DNA-3-methyladenine glycosidase; 10174367, EC 3.2.2.-, struc genomics, PSI-2, protein structure initiative, joint center structural genomics; 2.55A {Bacillus halodurans}
Probab=95.68 E-value=0.11 Score=46.86 Aligned_cols=130 Identities=13% Similarity=0.159 Sum_probs=91.9
Q ss_pred CChhHhhhhhhCCCccccChHHHHHHHHHHHhhccccHHHHHHhHHHHHHHhcCC--CHHHHhcCCHHHHHHhhCCCcch
Q 021082 130 SDKVYVAFHDECWGVPVYDDNQLFELLALSGMLMDYNWTEILKRKELFREAFGGF--DPKSVAKMGEKEILEISSNTAIM 207 (317)
Q Consensus 130 ~dply~~YHD~EWG~Pv~DDr~LFE~L~LE~fQAGLSW~tILkKR~~fr~AF~~F--D~~~VA~~~eedie~L~~d~~II 207 (317)
.||.+....+..-|.+.....-.||.|+-.+.-.-.+|..+.+-...+.+.|..+ +|+.|+..++++|.. -|
T Consensus 29 ~d~~l~~l~~~~~~~~~~~~~dpfe~Lv~~IlsQqts~~~a~~~~~rL~~~~G~~fPtp~~la~~~~e~Lr~----~G-- 102 (233)
T 2h56_A 29 QDSRLFQFIEIAGEVQLPTKPNPFQSLVSSIVEQQLSIKAASAIYGRVEQLVGGALEKPEQLYRVSDEALRQ----AG-- 102 (233)
T ss_dssp TCHHHHHHHHHHCCEEEECCSCHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTSCCCCTHHHHTSCHHHHHH----TT--
T ss_pred cCHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCCCHHHHHcCCHHHHHH----cC--
Confidence 3677765555444544434445799999999999999999999999999999777 999999999998822 23
Q ss_pred hchhhHHHHHHhHHHHHHHHHhcCCHHHhccccCCCccccCCCCCCCCCCCCCHHHHHHHHHHHHcCCcccChhhHHHHH
Q 021082 208 LAECRVRCIVDNAKCIVKILNEFGSFSSFMWGYVNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGPVIVYSFM 287 (317)
Q Consensus 208 Rnr~KI~AVi~NAr~il~i~~E~GSF~~ylWsfv~~kpi~n~~~~~~~vP~~t~lS~~lsKdLKkrGFkFVGPttvysFM 287 (317)
-.++|.+.|+.=|+.+.+ .+.++.... .+| .+..-++|. .++-|||-|+-.+|
T Consensus 103 ~~~~KA~~I~~~A~~i~~---~~~~~~~l~-----------------~~p-----~~~~~~~L~--~lpGIG~kTA~~il 155 (233)
T 2h56_A 103 VSKRKIEYIRHVCEHVES---GRLDFTELE-----------------GAE-----ATTVIEKLT--AIKGIGQWTAEMFM 155 (233)
T ss_dssp CCHHHHHHHHHHHHHHHT---TSSCHHHHT-----------------TSC-----HHHHHHHHH--TSTTCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHh---CCCCHHHHh-----------------cCC-----HHHHHHHHH--hCCCcCHHHHHHHH
Confidence 356788999988888753 222333211 111 123445665 48999999999987
Q ss_pred HH-hcc
Q 021082 288 QA-AGL 292 (317)
Q Consensus 288 QA-vG~ 292 (317)
.- .|.
T Consensus 156 l~alg~ 161 (233)
T 2h56_A 156 MFSLGR 161 (233)
T ss_dssp HHTTCC
T ss_pred HHhCCC
Confidence 75 454
No 9
>1kg2_A A/G-specific adenine glycosylase; DNA repair, hydrolase; 1.20A {Escherichia coli} SCOP: a.96.1.2 PDB: 1kg3_A 1muy_A 1kg6_A 1kg5_A 1mun_A 1mud_A 1kg4_A 1weg_A 1wei_A* 1wef_A* 1kg7_A 1kqj_A
Probab=95.42 E-value=0.12 Score=46.13 Aligned_cols=101 Identities=15% Similarity=0.175 Sum_probs=77.5
Q ss_pred HHHHHHHHHHhhccccHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhhCCCcchhchhhHHHHHHhHHHHHHHHHhc
Q 021082 151 QLFELLALSGMLMDYNWTEILKRKELFREAFGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIVKILNEF 230 (317)
Q Consensus 151 ~LFE~L~LE~fQAGLSW~tILkKR~~fr~AF~~FD~~~VA~~~eedie~L~~d~~IIRnr~KI~AVi~NAr~il~i~~E~ 230 (317)
-.||.|+-+++-.-.+|..+.+-...|.+.| .+|+.++..++++|++++.--|.- + |.+.++.=|+.+.+ ++
T Consensus 29 ~pfe~lv~~IlsQqt~~~~v~~~~~~l~~~~--pt~~~la~~~~~~l~~~i~~~G~~--~-kA~~l~~~a~~i~~---~~ 100 (225)
T 1kg2_A 29 TPYKVWLSEVMLQQTQVATVIPYFERFMARF--PTVTDLANAPLDEVLHLWTGLGYY--A-RARNLHKAAQQVAT---LH 100 (225)
T ss_dssp CHHHHHHHHHHHTSSCHHHHHHHHHHHHHHC--SSHHHHHHSCHHHHHHHHTTSCCT--H-HHHHHHHHHHHHHH---HS
T ss_pred CHHHHHHHHHHHCcCCHHHHHHHHHHHHHHC--CCHHHHHCCCHHHHHHHHHhCChH--H-HHHHHHHHHHHHHH---Hh
Confidence 3699999999999999999998777777666 379999999999999999888886 2 78888888887753 32
Q ss_pred CCHHHhccccCCCccccCCCCCCCCCCCCCHHHHHHHHHHHHcCCcccChhhHHHHHHHh
Q 021082 231 GSFSSFMWGYVNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGPVIVYSFMQAA 290 (317)
Q Consensus 231 GSF~~ylWsfv~~kpi~n~~~~~~~vP~~t~lS~~lsKdLKkrGFkFVGPttvysFMQAv 290 (317)
|+ ++|. .-++|. .++-|||.|+..+|.-+
T Consensus 101 ~g----------------------~~p~-------~~~~L~--~lpGIG~~TA~~il~~a 129 (225)
T 1kg2_A 101 GG----------------------KFPE-------TFEEVA--ALPGVGRSTAGAILSLS 129 (225)
T ss_dssp TT----------------------SCCC-------SHHHHH--TSTTCCHHHHHHHHHHH
T ss_pred CC----------------------CchH-------HHHHHh--cCCCCcHHHHHHHHHHh
Confidence 21 1221 123454 48899999998887643
No 10
>2yg9_A DNA-3-methyladenine glycosidase II, putative; hydrolase, DNA repair; 1.95A {Deinococcus radiodurans} PDB: 2yg8_A
Probab=95.33 E-value=0.11 Score=46.67 Aligned_cols=128 Identities=17% Similarity=0.155 Sum_probs=91.6
Q ss_pred CChhHhhhhhhCCCc-cccChHHHHHHHHHHHhhccccHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhhCCCcchh
Q 021082 130 SDKVYVAFHDECWGV-PVYDDNQLFELLALSGMLMDYNWTEILKRKELFREAFGGFDPKSVAKMGEKEILEISSNTAIML 208 (317)
Q Consensus 130 ~dply~~YHD~EWG~-Pv~DDr~LFE~L~LE~fQAGLSW~tILkKR~~fr~AF~~FD~~~VA~~~eedie~L~~d~~IIR 208 (317)
.||.+..-.+..-|. +.....-.||.|+-.+.-.-.||..+.+-...+.+.|...+|+.|+..+++++.. -+ -
T Consensus 38 ~D~~l~~l~~~~~~~~~~~~~~dpfe~Lv~~IlsQq~s~~~a~~~~~rL~~~~G~ptp~~la~~~~e~Lr~----~G--~ 111 (225)
T 2yg9_A 38 RDPVLAQVTSLCGELPVLAPTPDPFGRLVRSVAGQQLSVKAAQAIYGRLEGLPGGVVPAALLKVSGDDLRG----VG--L 111 (225)
T ss_dssp TSHHHHHHHHHHCCCCCCCCCSCHHHHHHHHHHHTTSCHHHHHHHHHHHHTSTTCSCHHHHTTSCHHHHHH----TT--C
T ss_pred cCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHhCcChHHHHHHHHHHHHHHhCcCCHHHHHcCCHHHHHH----CC--C
Confidence 478877666655554 3444445799999999999999999999999998888878999999999998732 22 2
Q ss_pred chhhHHHHHHhHHHHHHHHHhcCCHHHhccccCCCccccCCCCCCCCCCCCCHHHHHHHHHHHHcCCcccChhhHHHHHH
Q 021082 209 AECRVRCIVDNAKCIVKILNEFGSFSSFMWGYVNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGPVIVYSFMQ 288 (317)
Q Consensus 209 nr~KI~AVi~NAr~il~i~~E~GSF~~ylWsfv~~kpi~n~~~~~~~vP~~t~lS~~lsKdLKkrGFkFVGPttvysFMQ 288 (317)
.+.|.+.|+.=|+.+.+ ...+++. ...+| .+.+-++|. .++-|||-|+..+|.
T Consensus 112 ~~~KA~~i~~lA~~~~~---g~~~l~~-----------------l~~~~-----~~e~~~~L~--~l~GIG~~TA~~ill 164 (225)
T 2yg9_A 112 SWAKVRTVQAAAAAAVS---GQIDFAH-----------------LSGQP-----DELVIAELV--QLPGIGRWTAEMFLL 164 (225)
T ss_dssp CHHHHHHHHHHHHHHHT---TSSCGGG-----------------CTTSC-----HHHHHHHHH--TSTTCCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHh---CCcCHHH-----------------HhcCC-----HHHHHHHHH--cCCCCCHHHHHHHHH
Confidence 35789999988888754 1112221 11112 234555666 489999999998887
Q ss_pred Hh
Q 021082 289 AA 290 (317)
Q Consensus 289 Av 290 (317)
-+
T Consensus 165 ~~ 166 (225)
T 2yg9_A 165 FA 166 (225)
T ss_dssp HT
T ss_pred Hh
Confidence 54
No 11
>1pu6_A 3-methyladenine DNA glycosylase; helix-hairpin-helix, base excision repair, hydrolase; HET: KCX; 1.64A {Helicobacter pylori} SCOP: a.96.1.5 PDB: 1pu7_A* 1pu8_A*
Probab=95.08 E-value=0.15 Score=45.39 Aligned_cols=107 Identities=20% Similarity=0.212 Sum_probs=79.9
Q ss_pred HHHHHHHHHhhccccHHHHHHhHHHHHHH-hcCCC----HHHHhcCCHHHHHHhhCCCcchhchhhHHHHHHhHHHHHHH
Q 021082 152 LFELLALSGMLMDYNWTEILKRKELFREA-FGGFD----PKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIVKI 226 (317)
Q Consensus 152 LFE~L~LE~fQAGLSW~tILkKR~~fr~A-F~~FD----~~~VA~~~eedie~L~~d~~IIRnr~KI~AVi~NAr~il~i 226 (317)
-||.|+-.+.-.-.+|..+.+-...+.++ |-..+ |+.++..+++++++++..-|.-+ .|.+.+..=|+.+.
T Consensus 30 pfe~Lv~~ILsQqts~~~v~~~~~~L~~~~~pt~~~~~t~~~la~~~~e~L~~~ir~~G~~~--~KA~~L~~~a~~i~-- 105 (218)
T 1pu6_A 30 KFEALLGAVLTQNTKFEAVLKSLENLKNAFILENDDEINLKKIAYIEFSKLAECVRPSGFYN--QKAKRLIDLSGNIL-- 105 (218)
T ss_dssp SHHHHHHHHHTTTSCHHHHHHHHHHHHHTTSSCSCHHHHHHHHHHSCHHHHHHHTGGGSCHH--HHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHccCCCccccccHHHHHhCCHHHHHHHHHHCCCcH--HHHHHHHHHHHHHH--
Confidence 58999999999999999999888888776 54322 99999999999999998888654 57778887777764
Q ss_pred HHhcCCHHHhccccCCCccccCCCCCCCCCCCCCHHHHHHHHHHHHcCCcccChhhHHHHHHHh
Q 021082 227 LNEFGSFSSFMWGYVNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGPVIVYSFMQAA 290 (317)
Q Consensus 227 ~~E~GSF~~ylWsfv~~kpi~n~~~~~~~vP~~t~lS~~lsKdLKkrGFkFVGPttvysFMQAv 290 (317)
+++|+|...- +| ..-++|. .++-|||.|+..+|.-+
T Consensus 106 -~~~~~l~~~~------------------~~-------~~~~~L~--~lpGIG~kTA~~il~~a 141 (218)
T 1pu6_A 106 -KDFQSFENFK------------------QE-------VTREWLL--DQKGIGKESADAILCYA 141 (218)
T ss_dssp -HHHSSHHHHH------------------HH-------CCHHHHH--TSTTCCHHHHHHHHHHT
T ss_pred -HhcCChhhcc------------------ch-------HHHHHHH--cCCCcCHHHHHHHHHHH
Confidence 4567765320 01 1122454 48889999998888754
No 12
>3fhg_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase, hydrolase; 1.90A {Sulfolobus solfataricus}
Probab=94.89 E-value=0.092 Score=46.38 Aligned_cols=112 Identities=12% Similarity=0.155 Sum_probs=81.5
Q ss_pred cChHHHHHHHHHHHhhccccHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhhCCCcchhchhhHHHHHHhHHHHHHH
Q 021082 147 YDDNQLFELLALSGMLMDYNWTEILKRKELFREAFGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIVKI 226 (317)
Q Consensus 147 ~DDr~LFE~L~LE~fQAGLSW~tILkKR~~fr~AF~~FD~~~VA~~~eedie~L~~d~~IIRnr~KI~AVi~NAr~il~i 226 (317)
...+-.||.|+-++.-.-.+|..+.+-.+.+ ++.++..++++|++++..-++=-.+.|.+.+..-|+++.+.
T Consensus 28 ~~~~~~fe~Lv~~ILsqqts~~~~~~~~~~L--------~~~l~~~~~e~l~~~ir~~G~g~~~~KA~~l~~~a~~~~~~ 99 (207)
T 3fhg_A 28 SNEEVWFRELTLCLLTANSSFISAYQALNCL--------GQKIYYANEEEIRNILKSCKYRFYNLKAKYIIMAREKVYGR 99 (207)
T ss_dssp SCHHHHHHHHHHHHHHTTSCHHHHHHHHHHH--------GGGGGTCCHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHTTT
T ss_pred CCcCCHHHHHHHHHHcCCCCHHHHHHHHHHH--------HHHHHcCCHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHH
Confidence 3567899999999999999999999888777 58899999999999877555423567888888888866421
Q ss_pred HHhcCCHHHhccccCCCccccCCCCCCCCCCCCCHHHHHHHHHHHHcCCcccChhhHHHHHHHhcc
Q 021082 227 LNEFGSFSSFMWGYVNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGPVIVYSFMQAAGL 292 (317)
Q Consensus 227 ~~E~GSF~~ylWsfv~~kpi~n~~~~~~~vP~~t~lS~~lsKdLKkrGFkFVGPttvysFMQAvG~ 292 (317)
-.|++..|- + .+ | +..-++|. .++-|||.|+-.+|..+|.
T Consensus 100 --~~~~l~~~~-~----~~---------------~--~~~~~~L~--~lpGIG~kTA~~il~~~~~ 139 (207)
T 3fhg_A 100 --LKEEIKPLA-D----ED---------------Q--QLARERLL--NIKGIGMQEASHFLRNVGY 139 (207)
T ss_dssp --HHHHHHHHH-H----HC---------------H--HHHHHHHT--TSTTCCHHHHHHHHHHTTC
T ss_pred --hhhhHHHHh-C----CC---------------H--HHHHHHHH--cCCCcCHHHHHHHHHHhCC
Confidence 112333321 0 00 1 13445565 6999999999999987676
No 13
>3s6i_A DNA-3-methyladenine glycosylase 1; DNA glycosylase, DNA repair, helix-hairpin-helix (HHH), ABAS tetrahydrofuran (THF); HET: 3DR; 2.28A {Schizosaccharomyces pombe}
Probab=94.14 E-value=0.31 Score=43.83 Aligned_cols=128 Identities=11% Similarity=0.093 Sum_probs=91.2
Q ss_pred CChhHhhhhhhCCCccccC--hH-HHHHHHHHHHhhccccHHHHHHhHHHHHHHh---cCC-CHHHHhcCCHHHHHHhhC
Q 021082 130 SDKVYVAFHDECWGVPVYD--DN-QLFELLALSGMLMDYNWTEILKRKELFREAF---GGF-DPKSVAKMGEKEILEISS 202 (317)
Q Consensus 130 ~dply~~YHD~EWG~Pv~D--Dr-~LFE~L~LE~fQAGLSW~tILkKR~~fr~AF---~~F-D~~~VA~~~eedie~L~~ 202 (317)
.||.+..-.+..-|..+.- .+ -.||.|+-.+.-.-.||..+.+-...| +.| ..| +|+.|+..++++|..
T Consensus 25 ~Dp~l~~li~~~g~~r~~~~~~~~d~fe~Lv~~Il~Qq~s~~~a~~~~~rL-~~~Gg~~~fPtp~~la~~~~e~Lr~--- 100 (228)
T 3s6i_A 25 LDENWKRLVKLVGNYRPNRSMEKKEPYEELIRAVASQQLHSKAANAIFNRF-KSISNNGQFPTPEEIRDMDFEIMRA--- 100 (228)
T ss_dssp SCHHHHHHHHHHCSCCCCCTTTTSCHHHHHHHHHHHSSSCHHHHHHHHHHH-HTSSGGGSCCCHHHHHHSCHHHHHH---
T ss_pred hChHHHHHHHHcCCCCCCCCCCcCCHHHHHHHHHHhCcCCHHHHHHHHHHH-HHhcCCCCCCCHHHHHcCCHHHHHH---
Confidence 4888877776655654432 22 579999999999999999999999999 888 335 999999999998732
Q ss_pred CCcchhchhhHHHHHHhHHHHHHHHHhcCCHH--HhccccCCCccccCCCCCCCCCCCCCHHHHHHHHHHHHcCCcccCh
Q 021082 203 NTAIMLAECRVRCIVDNAKCIVKILNEFGSFS--SFMWGYVNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGP 280 (317)
Q Consensus 203 d~~IIRnr~KI~AVi~NAr~il~i~~E~GSF~--~ylWsfv~~kpi~n~~~~~~~vP~~t~lS~~lsKdLKkrGFkFVGP 280 (317)
+=-.++|.+.|+.=|+++.+ |.+. +.+-. ++ .+.+-+.|. .++-|||
T Consensus 101 ---~G~~~rKa~~i~~~A~~~~~-----g~~p~~~~l~~----------------~~-----~~e~~~~L~--~l~GIG~ 149 (228)
T 3s6i_A 101 ---CGFSARKIDSLKSIAEATIS-----GLIPTKEEAER----------------LS-----NEELIERLT--QIKGIGR 149 (228)
T ss_dssp ---HTCCHHHHHHHHHHHHHHHH-----TSSCCHHHHTT----------------SC-----HHHHHHHHT--TSTTCCH
T ss_pred ---cCCCHHHHHHHHHHHHHHHc-----CCCCChHHHhc----------------CC-----HHHHHHHHH--hCCCcCH
Confidence 33356789999988888752 3321 11211 11 234556665 4999999
Q ss_pred hhHHHHHH-Hhcc
Q 021082 281 VIVYSFMQ-AAGL 292 (317)
Q Consensus 281 ttvysFMQ-AvG~ 292 (317)
-|+..+|. +.|.
T Consensus 150 ~TA~~ill~~lg~ 162 (228)
T 3s6i_A 150 WTVEMLLIFSLNR 162 (228)
T ss_dssp HHHHHHHHHTSCC
T ss_pred HHHHHHHHHhCCC
Confidence 99988875 5564
No 14
>4b21_A Probable DNA-3-methyladenine glycosylase 2; hydrolase-DNA complex, helix-hairpin-helix; HET: BGC 3DR; 1.45A {Schizosaccharomyces pombe} PDB: 4b22_A* 4b23_A* 4b24_A*
Probab=93.87 E-value=0.41 Score=43.23 Aligned_cols=130 Identities=12% Similarity=0.077 Sum_probs=90.3
Q ss_pred ChhHhhhhhhCCCcc--ccChHHHHHHHHHHHhhccccHHHHHHhHHHHHHHhcC---C-CHHHHhcCCHHHHHHhhCCC
Q 021082 131 DKVYVAFHDECWGVP--VYDDNQLFELLALSGMLMDYNWTEILKRKELFREAFGG---F-DPKSVAKMGEKEILEISSNT 204 (317)
Q Consensus 131 dply~~YHD~EWG~P--v~DDr~LFE~L~LE~fQAGLSW~tILkKR~~fr~AF~~---F-D~~~VA~~~eedie~L~~d~ 204 (317)
||.+..-.+..-|.. ....+-.||.|+-.+.-.-.||..+.+-...|.++|.. | +|+.|+..++++|.. -
T Consensus 37 Dp~l~~li~~~~g~rl~~~~~~dpfe~Lv~~Il~Qq~s~~~a~~~~~rL~~~~G~~~~fPtpe~la~~~~e~Lr~----~ 112 (232)
T 4b21_A 37 DNKWSSLVKKVGPCTLTPHPEHAPYEGIIRAITSQKLSDAATNSIINKFCTQCSDNDEFPTPKQIMETDVETLHE----C 112 (232)
T ss_dssp CHHHHHHHHHHCSCCCCCCTTSCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHCSSSSCCCHHHHHTSCHHHHHT----T
T ss_pred CHHHHHHHHHcCCCCCCCCCCCCHHHHHHHHHHhCcCcHHHHHHHHHHHHHHhCCCCCCCCHHHHHcCCHHHHHH----c
Confidence 777766665555532 22233479999999999999999999999999999975 5 999999999998743 3
Q ss_pred cchhchhhHHHHHHhHHHHHHHHHhcCCHHHhccccCCCccccCCCCCCCCCCCCCHHHHHHHHHHHHcCCcccChhhHH
Q 021082 205 AIMLAECRVRCIVDNAKCIVKILNEFGSFSSFMWGYVNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGPVIVY 284 (317)
Q Consensus 205 ~IIRnr~KI~AVi~NAr~il~i~~E~GSF~~ylWsfv~~kpi~n~~~~~~~vP~~t~lS~~lsKdLKkrGFkFVGPttvy 284 (317)
++ .++|.+.|..=|+++.+ .+.+++.. +... | .+.+-++|.+ ++-|||-|+-
T Consensus 113 Gl--~~~Ka~~l~~~A~~~~~--g~~p~l~~-l~~~----------------~-----~~~~~~~L~~--l~GIG~~TA~ 164 (232)
T 4b21_A 113 GF--SKLKSQEIHIVAEAALN--KQIPSKSE-IEKM----------------S-----EEELMESLSK--IKGVKRWTIE 164 (232)
T ss_dssp TC--CHHHHHHHHHHHHHHHT--TCSCCHHH-HHHS----------------C-----HHHHHHHHTT--STTCCHHHHH
T ss_pred CC--cHHHHHHHHHHHHHHHh--CCCCCHHH-HHcC----------------C-----HHHHHHHHHh--CCCcCHHHHH
Confidence 55 46789999888888753 01112222 1111 1 1244556654 8999999998
Q ss_pred HHHHH-hcc
Q 021082 285 SFMQA-AGL 292 (317)
Q Consensus 285 sFMQA-vG~ 292 (317)
.+|.. .|.
T Consensus 165 ~ill~alg~ 173 (232)
T 4b21_A 165 MYSIFTLGR 173 (232)
T ss_dssp HHHHHTSCC
T ss_pred HHHHHhCCC
Confidence 87764 453
No 15
>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*
Probab=93.58 E-value=0.56 Score=44.43 Aligned_cols=103 Identities=21% Similarity=0.302 Sum_probs=79.0
Q ss_pred hHHHHHHHHHHHhhccccHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhhCCCcchhchhhHHHHHHhHHHHHHHHH
Q 021082 149 DNQLFELLALSGMLMDYNWTEILKRKELFREAFGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIVKILN 228 (317)
Q Consensus 149 Dr~LFE~L~LE~fQAGLSW~tILkKR~~fr~AF~~FD~~~VA~~~eedie~L~~d~~IIRnr~KI~AVi~NAr~il~i~~ 228 (317)
.+--||.|+-+++-.-.+|.+|..-...|.+.| .+|+.+|..++++|++++.--|.- + |.+.++.=|+.+.+
T Consensus 36 ~~~p~~~lv~~il~qqt~~~~~~~~~~~l~~~~--pt~~~la~a~~~~l~~~i~~~G~~--~-ra~~l~~~a~~~~~--- 107 (369)
T 3fsp_A 36 DRDPYKVWVSEVMLQQTRVETVIPYFEQFIDRF--PTLEALADADEDEVLKAWEGLGYY--S-RVRNLHAAVKEVKT--- 107 (369)
T ss_dssp CCCHHHHHHHHHHTTTSCHHHHHHHHHHHHHHC--CSHHHHHTSCHHHHHHTTTTSSCT--H-HHHHHHHHHHHHHH---
T ss_pred CCChHHHHHHHHHhccCcHHHHHHHHHHHHHHC--CCHHHHHCCCHHHHHHHHHhcChH--H-HHHHHHHHHHHHHH---
Confidence 344689999999999999999999888888877 589999999999999999888885 3 78888888888754
Q ss_pred hcCCHHHhccccCCCccccCCCCCCCCCCCCCHHHHHHHHHHHHcCCcccChhhHHHHHHHh
Q 021082 229 EFGSFSSFMWGYVNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGPVIVYSFMQAA 290 (317)
Q Consensus 229 E~GSF~~ylWsfv~~kpi~n~~~~~~~vP~~t~lS~~lsKdLKkrGFkFVGPttvysFMQAv 290 (317)
++|+ ++|. .-++|.+ ++-|||.|+-.+|.-+
T Consensus 108 ~~~g----------------------~~p~-------~~~~L~~--l~GIG~~tA~~il~~~ 138 (369)
T 3fsp_A 108 RYGG----------------------KVPD-------DPDEFSR--LKGVGPYTVGAVLSLA 138 (369)
T ss_dssp HHTT----------------------CCCC-------SHHHHHT--STTCCHHHHHHHHHHH
T ss_pred HcCC----------------------CChh-------HHHHHhc--CCCcCHHHHHHHHHHH
Confidence 3331 1121 1234543 8889999888877654
No 16
>3fhf_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase; 2.00A {Methanocaldococcus jannaschii} PDB: 3knt_A*
Probab=92.45 E-value=0.55 Score=42.20 Aligned_cols=107 Identities=12% Similarity=0.177 Sum_probs=72.5
Q ss_pred cChHHHHHHHHHHHhhccccHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhhCCCc--chhchhhHHHHHHhHHHHH
Q 021082 147 YDDNQLFELLALSGMLMDYNWTEILKRKELFREAFGGFDPKSVAKMGEKEILEISSNTA--IMLAECRVRCIVDNAKCIV 224 (317)
Q Consensus 147 ~DDr~LFE~L~LE~fQAGLSW~tILkKR~~fr~AF~~FD~~~VA~~~eedie~L~~d~~--IIRnr~KI~AVi~NAr~il 224 (317)
.+.+-.||.|+..+.-+--+|..+.+--+.+. +.++.+++++|++++..-| .-+ .|-+-+++-|+ +
T Consensus 39 ~~~~~~fe~Lv~~ILsqqt~~~~v~~a~~~L~--------~~l~~~~~eeL~~~Ir~~G~rf~~--~KA~~I~~~a~-~- 106 (214)
T 3fhf_A 39 KSNEEWFKELCFCILTANFTAEGGIRIQKEIG--------DGFLTLPREELEEKLKNLGHRFYR--KRAEYIVLARR-F- 106 (214)
T ss_dssp SCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHT--------THHHHSCHHHHHHHHHHTTCTTHH--HHHHHHHHHGG-G-
T ss_pred CCCCChHHHHHHHHHcCCCCHHHHHHHHHHHH--------HHHHCCCHHHHHHHHHHHhhHHHH--HHHHHHHHHHH-h-
Confidence 35678999999999999999999998777773 5689999999999988767 444 45444544444 2
Q ss_pred HHHHhcCCHHHhccccCCCccccCCCCCCCCCCCCCHHHHHHHHHHHHcCCcccChhhHHHHHHHhcc
Q 021082 225 KILNEFGSFSSFMWGYVNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGPVIVYSFMQAAGL 292 (317)
Q Consensus 225 ~i~~E~GSF~~ylWsfv~~kpi~n~~~~~~~vP~~t~lS~~lsKdLKkrGFkFVGPttvysFMQAvG~ 292 (317)
|..-+.+-++ .++ | ..-++|.+ .++-|||.|+..+|.-+|.
T Consensus 107 ------~~l~~~~~~~-------------~~~----~---~~re~Ll~-~LpGVG~KTA~~vL~~~g~ 147 (214)
T 3fhf_A 107 ------KNIKDIVESF-------------ENE----K---VAREFLVR-NIKGIGYKEASHFLRNVGY 147 (214)
T ss_dssp ------CCHHHHHHHS-------------SSH----H---HHHHHHHH-HSTTCCHHHHHHHHHHTTC
T ss_pred ------hHHHHHhccc-------------CCc----H---HHHHHHHH-hCCCCCHHHHHHHHHHcCC
Confidence 2222222111 011 1 22334441 3889999999999987776
No 17
>2jhn_A ALKA, 3-methyladenine DNA-glycosylase; DNA repair, N1-methyladenine, N3-methylcytosine, hyperthermophiles, hydrolase; HET: MBO MES; 1.8A {Archaeoglobus fulgidus} PDB: 2jhj_A
Probab=91.42 E-value=0.88 Score=42.08 Aligned_cols=123 Identities=18% Similarity=0.230 Sum_probs=86.1
Q ss_pred ChhHhhhhhhCCCccccC--hHHHHHHHHHHHhhccccHHHHHHhHHHHHHHhcC-----------C-CHHHHhcCCHHH
Q 021082 131 DKVYVAFHDECWGVPVYD--DNQLFELLALSGMLMDYNWTEILKRKELFREAFGG-----------F-DPKSVAKMGEKE 196 (317)
Q Consensus 131 dply~~YHD~EWG~Pv~D--Dr~LFE~L~LE~fQAGLSW~tILkKR~~fr~AF~~-----------F-D~~~VA~~~eed 196 (317)
||.+..-.+..-|.++.- ..-.||.|+-.+.-.-.||..+.+-...+.+.|.. | +|+.|+..++++
T Consensus 95 D~~l~~l~~~~~glr~~~~~~~d~fe~lv~~Il~Qq~s~~~a~~~~~rL~~~~G~~~~~~g~~~~~fPtp~~la~~~~~~ 174 (295)
T 2jhn_A 95 DEKLRMLKNRFYGFGRAGLMSMSVFEGIAKAIIQQQISFVVAEKLAAKIVGRFGDEVEWNGLKFYGFPTQEAILKAGVEG 174 (295)
T ss_dssp SHHHHHHHHHTTTCCSCCCSCSSHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHSCEEEETTEEEECCCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCCCCCCCCCCHHHHHHHHHHcCcccHHHHHHHHHHHHHHhCCCCCCCCCccccCCCHHHHHcCCHHH
Confidence 677766666555655543 45589999999999999999999999999999864 4 799999998888
Q ss_pred HHHhhCCCcchhchhhHHHHHHhHHHHHHHHHhcCCHHHhccccCCCccccCCCCCCCCCCCCCHHHHHHHHHHHHcCCc
Q 021082 197 ILEISSNTAIMLAECRVRCIVDNAKCIVKILNEFGSFSSFMWGYVNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFR 276 (317)
Q Consensus 197 ie~L~~d~~IIRnr~KI~AVi~NAr~il~i~~E~GSF~~ylWsfv~~kpi~n~~~~~~~vP~~t~lS~~lsKdLKkrGFk 276 (317)
+.. -+ -.++|.+.|+.=|++ |+|... ..+| . +.+-+.|. .++
T Consensus 175 Lr~----~G--~~~rKa~~i~~~A~~--------g~l~~l-----------------~~~~----~-~e~~~~L~--~lp 216 (295)
T 2jhn_A 175 LRE----CG--LSRRKAELIVEIAKE--------ENLEEL-----------------KEWG----E-EEAYEYLT--SFK 216 (295)
T ss_dssp HHH----TT--CCHHHHHHHHHHHTC--------SSGGGG-----------------GGSC----H-HHHHHHHH--TST
T ss_pred HHH----cC--CCHHHHHHHHHHHHC--------CCHhhh-----------------hcCC----H-HHHHHHHh--cCC
Confidence 732 12 245676666666554 444321 0111 1 34555666 489
Q ss_pred ccChhhHHHHHHH-hc
Q 021082 277 LVGPVIVYSFMQA-AG 291 (317)
Q Consensus 277 FVGPttvysFMQA-vG 291 (317)
-|||-|+-.+|.. .|
T Consensus 217 GIG~~TA~~ill~~lg 232 (295)
T 2jhn_A 217 GIGRWTAELVLSIALG 232 (295)
T ss_dssp TCCHHHHHHHHHHTTC
T ss_pred CcCHHHHHHHHHHccC
Confidence 9999999887764 56
No 18
>3i0w_A 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-OXOG, 8OXOG, glycosylase, cytosine, hydrolase,lyase/DNA complex; HET: 8OG; 1.73A {Clostridium acetobutylicum} PDB: 3i0x_A* 3f10_A* 3f0z_A
Probab=89.03 E-value=2 Score=39.74 Aligned_cols=128 Identities=18% Similarity=0.145 Sum_probs=92.0
Q ss_pred ChhHhhhhhhCCCccccChHHHHHHHHHHHhhccccHHHHHHhHHHHHHHhcC-----------C-CHHHHhcCCHHHHH
Q 021082 131 DKVYVAFHDECWGVPVYDDNQLFELLALSGMLMDYNWTEILKRKELFREAFGG-----------F-DPKSVAKMGEKEIL 198 (317)
Q Consensus 131 dply~~YHD~EWG~Pv~DDr~LFE~L~LE~fQAGLSW~tILkKR~~fr~AF~~-----------F-D~~~VA~~~eedie 198 (317)
||.+..-.+.--|..+.. .-.||.|+-.+.-.-.||..+.+-...+.++|.. | +|+.+|..+++++.
T Consensus 95 Dp~l~~~~~~~~glR~~~-~dpfE~Lv~~IlsQq~s~~~a~~~~~rL~~~~G~~~~~~g~~~~~fPtpe~la~~~~e~L~ 173 (290)
T 3i0w_A 95 DPLLKKSVDFGEGIRILR-QDPFEILLSFIISANNRIPMIKKCINNISEKAGKKLEYKGKIYYAFPTVDKLHEFTEKDFE 173 (290)
T ss_dssp SHHHHHHHHHTTTCCCCC-CCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSCEEEETTEEEECCCCHHHHTTCCHHHHH
T ss_pred CHHHHHHHHHCCCCCCCC-CCHHHHHHHHHHhCcccHHHHHHHHHHHHHHhCCCcccCCcccccCCcHHHHHCCCHHHHH
Confidence 677766666667766655 6689999999999999999999999999999864 5 99999999999998
Q ss_pred HhhCCCcchhchhhHHHHHHhHHHHHHHHHhcCCHHHhccccCCCccccCCCCCCCCCCCCCHHHHHHHHHHHHcCCccc
Q 021082 199 EISSNTAIMLAECRVRCIVDNAKCIVKILNEFGSFSSFMWGYVNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLV 278 (317)
Q Consensus 199 ~L~~d~~IIRnr~KI~AVi~NAr~il~i~~E~GSF~~ylWsfv~~kpi~n~~~~~~~vP~~t~lS~~lsKdLKkrGFkFV 278 (317)
++ ++= .|.+.|+.=|+++.+ .+.++...- .. + ....-+.|. .++-|
T Consensus 174 ~~----g~g---~Ra~~I~~~A~~i~~---g~~~l~~l~-~~----~-----------------~~~~~~~L~--~lpGI 219 (290)
T 3i0w_A 174 EC----TAG---FRAKYLKDTVDRIYN---GELNLEYIK-SL----N-----------------DNECHEELK--KFMGV 219 (290)
T ss_dssp HT----TCG---GGHHHHHHHHHHHHT---TSSCHHHHH-HS----C-----------------HHHHHHHHT--TSTTC
T ss_pred Hc----CCc---hHHHHHHHHHHHHHh---CCCCHHHHh-cC----C-----------------HHHHHHHHH--hCCCc
Confidence 83 331 278888888887742 233443221 10 0 123445555 58999
Q ss_pred ChhhHHHHHH-Hhccc
Q 021082 279 GPVIVYSFMQ-AAGLT 293 (317)
Q Consensus 279 GPttvysFMQ-AvG~v 293 (317)
||-|+-.+|. +.|..
T Consensus 220 G~~TA~~ill~~lg~p 235 (290)
T 3i0w_A 220 GPQVADCIMLFSMQKY 235 (290)
T ss_dssp CHHHHHHHHHHHHCCT
T ss_pred CHHHHHHHHHHhCCCC
Confidence 9999877764 45653
No 19
>4e9f_A Methyl-CPG-binding domain protein 4; HHH DNA glycosylase family, hydrolase-DNA complex; HET: DNA 3DR; 1.79A {Homo sapiens} PDB: 4e9e_A* 4e9g_A* 4e9h_A* 4ea5_A* 4dk9_A* 1ngn_A 4ea4_A* 4ew4_A* 4evv_A* 4ew0_A* 3iho_A
Probab=88.56 E-value=0.81 Score=39.35 Aligned_cols=56 Identities=11% Similarity=0.056 Sum_probs=50.2
Q ss_pred HHHHHHHHhhccccHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhhCCCcchhch
Q 021082 153 FELLALSGMLMDYNWTEILKRKELFREAFGGFDPKSVAKMGEKEILEISSNTAIMLAE 210 (317)
Q Consensus 153 FE~L~LE~fQAGLSW~tILkKR~~fr~AF~~FD~~~VA~~~eedie~L~~d~~IIRnr 210 (317)
|+.|+-+++-+=-+|.+|.+--+.|.+.|- +|+.+|..++++|+++..--|.-++|
T Consensus 32 ~~vLVs~ILsqQT~~~~v~~~~~~l~~~~p--t~~~la~a~~~el~~~i~~lG~y~~K 87 (161)
T 4e9f_A 32 WKLLIATIFLNRTSGKMAIPVLWKFLEKYP--SAEVARTADWRDVSELLKPLGLYDLR 87 (161)
T ss_dssp HHHHHHHHHTTTSCHHHHHHHHHHHHHHSC--SHHHHTTSCHHHHHHHHGGGSCHHHH
T ss_pred HHHHHHHHHHhhCcHHHHHHHHHHHHHHCC--CHHHHhccChHhHHhHhhhcCCHHHH
Confidence 899999999999999999987777777765 89999999999999999999988764
No 20
>2d3d_A VTS1 protein; RNA binding, SAM domain, SRE hairpin binding, RNA binding protein; 1.60A {Saccharomyces cerevisiae} PDB: 2f8k_A 2fe9_A
Probab=76.13 E-value=4.9 Score=31.87 Aligned_cols=47 Identities=6% Similarity=-0.006 Sum_probs=38.0
Q ss_pred HHHHHHhcCCCHHHHhcCCHHHHHHhhCCCcchhchhhHHHHHHhHHHH
Q 021082 175 ELFREAFGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCI 223 (317)
Q Consensus 175 ~~fr~AF~~FD~~~VA~~~eedie~L~~d~~IIRnr~KI~AVi~NAr~i 223 (317)
.-|.+.|.+.+.+.+..|+|+|++++=- ...-+|+||...|..-|..
T Consensus 31 hKY~~~F~~~~~~~l~~LtdedL~~~GV--ta~GaRrKil~aI~~lr~~ 77 (88)
T 2d3d_A 31 HKYSDALSGTPWIELIYLDDETLEKKGV--LALGARRKLLKAFGIVIDY 77 (88)
T ss_dssp GGGHHHHTTSCHHHHTTCCHHHHHHTTC--CCHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHhcCCHHHHHHcCHHHHHHcCC--ccHhHHHHHHHHHHHHHHH
Confidence 5688899999999999999999999653 3457899999888755543
No 21
>1mpg_A ALKA, 3-methyladenine DNA glycosylase II; DNA repair, base excision, methylation, ALK hydrolase; 1.80A {Escherichia coli} SCOP: a.96.1.3 d.129.1.2 PDB: 1diz_A 1pvs_A* 3cvs_A* 3cvt_A* 3cw7_A* 3cwa_A* 3cws_A* 3cwt_A* 3cwu_A* 3d4v_A* 3ogd_A* 3oh9_A* 3oh6_A*
Probab=72.27 E-value=11 Score=34.46 Aligned_cols=122 Identities=16% Similarity=0.152 Sum_probs=84.1
Q ss_pred CCccccChHHHHHHHHHHHhhccccHHHHHHhHHHHHHHhcC----------C-CHHHHhcCCHHHHHHhhCCCcchhch
Q 021082 142 WGVPVYDDNQLFELLALSGMLMDYNWTEILKRKELFREAFGG----------F-DPKSVAKMGEKEILEISSNTAIMLAE 210 (317)
Q Consensus 142 WG~Pv~DDr~LFE~L~LE~fQAGLSW~tILkKR~~fr~AF~~----------F-D~~~VA~~~eedie~L~~d~~IIRnr 210 (317)
-|..+....-.||.|+-.+.-.-.||..+.+-...+.++|.. | +|+.|+..+++++.. -++ .+
T Consensus 103 ~glR~~~~~d~fe~lv~~Il~Qq~s~~~a~~~~~rL~~~~G~~~~~~~~~~~fPtp~~la~~~~~~Lr~----~G~--~~ 176 (282)
T 1mpg_A 103 PGLRLPGCVDAFEQGVRAILGQLVSVAMAAKLTARVAQLYGERLDDFPEYICFPTPQRLAAADPQALKA----LGM--PL 176 (282)
T ss_dssp TTCCCCCCSCHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHCCBCSSCTTCBCCCCHHHHHTCCHHHHHH----TTS--CH
T ss_pred CCCcCCCCCCHHHHHHHHHHhCcccHHHHHHHHHHHHHHhCCCCCCCCCcccCCCHHHHHcCCHHHHHH----cCC--CH
Confidence 344444445589999999999999999999999999998743 4 799999999998832 222 35
Q ss_pred hhHHHHHHhHHHHHHHHHhcCCHHHhccccCCCccccCCCCCCCCCCCCCHHHHHHHHHHHHcCCcccChhhHHHHHH-H
Q 021082 211 CRVRCIVDNAKCIVKILNEFGSFSSFMWGYVNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGPVIVYSFMQ-A 289 (317)
Q Consensus 211 ~KI~AVi~NAr~il~i~~E~GSF~~ylWsfv~~kpi~n~~~~~~~vP~~t~lS~~lsKdLKkrGFkFVGPttvysFMQ-A 289 (317)
.|.+.|+.=|+++.+ |.+ +.. .+. + .+..-+.|. .++-|||-|+-.+|. +
T Consensus 177 ~ra~~i~~~A~~~~~-----~~~--------~~~-----------~~~--~-~~~~~~~L~--~lpGIG~~TA~~ill~~ 227 (282)
T 1mpg_A 177 KRAEALIHLANAALE-----GTL--------PMT-----------IPG--D-VEQAMKTLQ--TFPGIGRWTANYFALRG 227 (282)
T ss_dssp HHHHHHHHHHHHHHH-----TCS--------CSS-----------CCS--C-HHHHHHHHT--TSTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc-----CCC--------Ccc-----------ccC--C-HHHHHHHHh--cCCCcCHHHHHHHHHHh
Confidence 788888888888753 111 110 111 1 123445664 489999999988766 4
Q ss_pred hcc-----cccccc
Q 021082 290 AGL-----TIDHLV 298 (317)
Q Consensus 290 vG~-----vnDHl~ 298 (317)
.|. +.||.+
T Consensus 228 lg~~d~~pvdd~~~ 241 (282)
T 1mpg_A 228 WQAKDVFLPDDYLI 241 (282)
T ss_dssp SCCSSCCCTTCHHH
T ss_pred CCCCCcCccccHHH
Confidence 553 356653
No 22
>2b6g_A VTS1P; alpha-helix, pentaloop, hairpin, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=71.81 E-value=8.2 Score=32.15 Aligned_cols=54 Identities=11% Similarity=0.111 Sum_probs=41.6
Q ss_pred HHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhhCCCcchhchhhHHHHHHhHHHH
Q 021082 167 WTEILKRKELFREAFGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCI 223 (317)
Q Consensus 167 W~tILkKR~~fr~AF~~FD~~~VA~~~eedie~L~~d~~IIRnr~KI~AVi~NAr~i 223 (317)
|..-| +-..|.+.|.+-+.+.+..++|+|++++=- ...-+|+||...|.--+..
T Consensus 55 WL~sL-rL~KY~~~F~~~~~d~l~~LTeeDL~~lGV--ta~GaRrKlL~AI~~Lr~~ 108 (119)
T 2b6g_A 55 WLKSL-RLHKYSDALSGTPWIELIYLDDETLEKKGV--LALGARRKLLKAFGIVIDY 108 (119)
T ss_dssp HHHHH-TCHHHHHHHTTSCHHHHTTCCHHHHHHHSC--CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHC-CChhHHHHHccCCHHHHHhcCHHHHHHCCC--CccccHHHHHHHHHHHHhh
Confidence 54433 247799999999999999999999999752 3468999998887654443
No 23
>3h8m_A Ephrin type-A receptor 7; SAM domain, kinase,structural genomics, structural genomics consortium, SGC, alternative splicing, ATP-binding; 2.10A {Homo sapiens}
Probab=70.38 E-value=6.2 Score=30.78 Aligned_cols=42 Identities=19% Similarity=0.475 Sum_probs=32.5
Q ss_pred HHHHHHh--cCCC-HHHHhcCCHHHHHHhhCCCcch--hchhhHHHHHHhH
Q 021082 175 ELFREAF--GGFD-PKSVAKMGEKEILEISSNTAIM--LAECRVRCIVDNA 220 (317)
Q Consensus 175 ~~fr~AF--~~FD-~~~VA~~~eedie~L~~d~~II--Rnr~KI~AVi~NA 220 (317)
+.|.+.| .+|| .+.|+.++++|+.+| +|- -||+||-..|..-
T Consensus 38 ~qY~~~F~~~g~d~~e~l~~lt~~DL~~l----GIt~~GHRkkIL~ai~~L 84 (90)
T 3h8m_A 38 ERYKDNFTAAGYNSLESVARMTIEDVMSL----GITLVGHQKKIMSSIQTM 84 (90)
T ss_dssp GGGHHHHHHTTCCSHHHHHTCCHHHHHHT----TCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHhhCCHHHHHHC----CCCCHHHHHHHHHHHHHH
Confidence 4566666 5788 899999999999887 553 5999998777543
No 24
>1v38_A SAM-domain protein samsn-1; structural genomics, hypothetical protein, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.60.1.2
Probab=70.04 E-value=4.9 Score=30.28 Aligned_cols=43 Identities=9% Similarity=0.290 Sum_probs=33.0
Q ss_pred HHHHHHh--cCCC-HHHHhcCCHHHHHHhhCCCcchhchhhHHHHHHh
Q 021082 175 ELFREAF--GGFD-PKSVAKMGEKEILEISSNTAIMLAECRVRCIVDN 219 (317)
Q Consensus 175 ~~fr~AF--~~FD-~~~VA~~~eedie~L~~d~~IIRnr~KI~AVi~N 219 (317)
+.|...| .||| .+.|+.++++|+.+|=-. ..-||+||.+.|..
T Consensus 25 ~~Y~~~F~~~gy~~~~~~~~lt~~DL~~lGI~--~~ghrkkil~ai~~ 70 (78)
T 1v38_A 25 QEYTSTLLLNGYETLDDLKDIKESHLIELNIA--DPEDRARLLSAAES 70 (78)
T ss_dssp GGGHHHHHHHTCCBHHHHTTCCHHHHHHTTTC--CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHhhcCHHHHHHcCCC--CHHHHHHHHHHHHH
Confidence 5677777 7994 999999999999987432 24699999865543
No 25
>2kso_A Ephrin type-A receptor 2; SAM domain, heterodimer, cell signaling, angiogenesis, apopt ATP-binding, cataract; NMR {Homo sapiens}
Probab=68.89 E-value=7.6 Score=29.53 Aligned_cols=45 Identities=20% Similarity=0.321 Sum_probs=33.5
Q ss_pred HHHHHHh--cCCC-HHHHhcCCHHHHHHhhCCCcchhchhhHHHHHHhHH
Q 021082 175 ELFREAF--GGFD-PKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAK 221 (317)
Q Consensus 175 ~~fr~AF--~~FD-~~~VA~~~eedie~L~~d~~IIRnr~KI~AVi~NAr 221 (317)
+.|...| .+|| .+.+..++++|+.+|=-. ..-+|+||...|..-+
T Consensus 29 ~qY~~~F~~~gid~~~~L~~lt~~DL~~lGI~--~~GhRkkIl~ai~~Lr 76 (82)
T 2kso_A 29 QQYTEHFMAAGYTAIEKVVQMTNDDIKRIGVR--LPGHQKRIAYSLLGLK 76 (82)
T ss_dssp TTHHHHHHHTTCCSHHHHTTCCHHHHHHHHCC--CTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHhCCHHHHHHCCCC--ChhHHHHHHHHHHHHH
Confidence 5667777 4688 899999999999887432 1359999987776544
No 26
>1ucv_A Ephrin type-A receptor 8; receptor oligomerization, developmental regulation, tyrosine kinase, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: a.60.1.2
Probab=68.17 E-value=9.3 Score=28.76 Aligned_cols=46 Identities=15% Similarity=0.392 Sum_probs=34.5
Q ss_pred HHHHHHh--cCCC-HHHHhcCCHHHHHHhhCCCcchhchhhHHHHHHhHHH
Q 021082 175 ELFREAF--GGFD-PKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKC 222 (317)
Q Consensus 175 ~~fr~AF--~~FD-~~~VA~~~eedie~L~~d~~IIRnr~KI~AVi~NAr~ 222 (317)
+.|.+.| .+|| .+.|..++++|+.+|=-. ..-||+||...|..-+.
T Consensus 20 ~~Y~~~F~~~~~d~~~~l~~lt~~DL~~lGI~--~~GhrkkIl~ai~~l~~ 68 (81)
T 1ucv_A 20 GRYRDHFAAGGYSSLGMVLRMNAQDVRALGIT--LMGHQKKILGSIQTMRA 68 (81)
T ss_dssp GGGHHHHHHTTCCBHHHHTTCCHHHHHHHTCC--CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHHcCHHHHHhCCCC--ChhHHHHHHHHHHHHHH
Confidence 4677777 5688 899999999999876322 24699999877766543
No 27
>1b4f_A EPHB2; SAM domain, EPH receptor, signal transduction, oligomer; 1.95A {Homo sapiens} SCOP: a.60.1.2 PDB: 1f0m_A 1sgg_A
Probab=68.09 E-value=7.2 Score=29.25 Aligned_cols=47 Identities=17% Similarity=0.326 Sum_probs=34.0
Q ss_pred HHHHHHh--cCC-CHHHHhcCCHHHHHHhhCCCcchhchhhHHHHHHhHHHH
Q 021082 175 ELFREAF--GGF-DPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCI 223 (317)
Q Consensus 175 ~~fr~AF--~~F-D~~~VA~~~eedie~L~~d~~IIRnr~KI~AVi~NAr~i 223 (317)
+.|.+.| .+| |.+.+..++++|+.+|=-. ..-||+||...|..-+.-
T Consensus 24 ~~Y~~~F~~~~~~~~~~l~~lt~~dL~~lGI~--~~GhrkkIl~ai~~l~~~ 73 (82)
T 1b4f_A 24 GQYKESFANAGFTSFDVVSQMMMEDILRVGVT--LAGHQKKILNSIQVMRAQ 73 (82)
T ss_dssp GGGHHHHHHTTCCSHHHHTTCCHHHHHHTTCC--CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHhCCHHHHHHcCCC--CHHHHHHHHHHHHHHHHH
Confidence 3466666 467 7899999999999975322 145999998887776644
No 28
>2xhi_A N-glycosylase/DNA lyase; lyase-DNA complex, lyase/DNA complex, separation-OF-function helix-hairpin-helix, DNA repair; HET: 8OG; 1.55A {Homo sapiens} PDB: 1ko9_A 1lwy_A* 1hu0_A* 1lwv_A* 1lww_A* 2noe_A* 2noh_A* 2nol_A* 1n3c_A* 1fn7_A* 2noz_A* 1yqk_A 1yqr_A* 1yql_A* 1yqm_A* 2noi_A 1ebm_A* 1m3q_A* 1m3h_A* 1n39_A* ...
Probab=68.04 E-value=16 Score=34.98 Aligned_cols=130 Identities=18% Similarity=0.123 Sum_probs=86.1
Q ss_pred ChhHhhhhhhCCCccccChHHHHHHHHHHHhhccccHHHHHHhHHHHHHHhcC-------------CCHHHHhcCCHHHH
Q 021082 131 DKVYVAFHDECWGVPVYDDNQLFELLALSGMLMDYNWTEILKRKELFREAFGG-------------FDPKSVAKMGEKEI 197 (317)
Q Consensus 131 dply~~YHD~EWG~Pv~DDr~LFE~L~LE~fQAGLSW~tILkKR~~fr~AF~~-------------FD~~~VA~~~eedi 197 (317)
||.+..-.+..-|..+.. .-.||.|+-.+...-.+|..+.+-...+.++|.. -+|+.|+..+.++.
T Consensus 132 Dp~l~~l~~~~~glR~~~-~dpfE~LV~~ILsQq~s~~~a~~~~~rL~~~~G~~~~~~~g~~~~~fPtpe~La~~~~ee~ 210 (360)
T 2xhi_A 132 DSHFQEVAQKFQGVRLLR-QDPIECLFSFICSSNNNIARITGMVERLCQAFGPRLIQLDDVTYHGFPSLQALAGPEVEAH 210 (360)
T ss_dssp CHHHHHHHHHSTTCCCCC-CCHHHHHHHHHTTTTSCHHHHHHHHHHHHHHHSCEEEEETTEEEECCCCHHHHTSTTHHHH
T ss_pred CHHHHHHHHHcCCCCCCC-CCHHHHHHHHHHhCcCcHHHHHHHHHHHHHHhCCCcccCCCcccccCCCHHHHHcCCHHHH
Confidence 455555555556665544 4689999999999999999999999999998853 37999999865432
Q ss_pred HHhhCCCcchhchhhHHHHHHhHHHHHHHHHhcCC-HHHhccccCCCccccCCCCCCCCCCCCCHHHHHHHHHHHHcCCc
Q 021082 198 LEISSNTAIMLAECRVRCIVDNAKCIVKILNEFGS-FSSFMWGYVNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFR 276 (317)
Q Consensus 198 e~L~~d~~IIRnr~KI~AVi~NAr~il~i~~E~GS-F~~ylWsfv~~kpi~n~~~~~~~vP~~t~lS~~lsKdLKkrGFk 276 (317)
+..-++ . .|.+.|+.=|+++. +++|+ ++ +-.. ..+| .+..-+.|. .++
T Consensus 211 ---Lr~~Gl-~--~RA~~I~~~A~~i~---~~~~G~~~--L~~l-------------~~~~-----~~~~~~~L~--~Lp 259 (360)
T 2xhi_A 211 ---LRKLGL-G--YRARYVSASARAIL---EEQGGLAW--LQQL-------------RESS-----YEEAHKALC--ILP 259 (360)
T ss_dssp ---HHHTTC-T--THHHHHHHHHHHHH---HTTCTHHH--HHGG-------------GTSC-----HHHHHHHHT--TST
T ss_pred ---HHHcCC-c--HHHHHHHHHHHHHH---hccCCccC--HHHH-------------hcCC-----HHHHHHHHH--hCC
Confidence 223456 3 47888888888774 34432 11 1001 0111 123445565 589
Q ss_pred ccChhhHHHHHHH-hcc
Q 021082 277 LVGPVIVYSFMQA-AGL 292 (317)
Q Consensus 277 FVGPttvysFMQA-vG~ 292 (317)
-|||-|+-.+|.. .|.
T Consensus 260 GIGp~TA~~ill~alg~ 276 (360)
T 2xhi_A 260 GVGTCVADKICLMALDK 276 (360)
T ss_dssp TCCHHHHHHHHHHHSCC
T ss_pred CCCHHHHHHHHHHhCCC
Confidence 9999999888765 454
No 29
>1b0x_A Protein (EPHA4 receptor tyrosine kinase); protein interaction module, dimerization domain, transferase; 2.00A {Mus musculus} SCOP: a.60.1.2
Probab=67.19 E-value=7.6 Score=30.12 Aligned_cols=46 Identities=13% Similarity=0.393 Sum_probs=34.0
Q ss_pred HHHHHHhc--CC-CHHHHhcCCHHHHHHhhCCCcchhchhhHHHHHHhHHH
Q 021082 175 ELFREAFG--GF-DPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKC 222 (317)
Q Consensus 175 ~~fr~AF~--~F-D~~~VA~~~eedie~L~~d~~IIRnr~KI~AVi~NAr~ 222 (317)
+.|...|. +| |.+.+..|+++|+.+|=-. .+-||+||...|..-+.
T Consensus 39 ~~Y~~~F~~~g~~~~~~l~~lt~~DL~~lGI~--~~GhrkkIl~ai~~L~~ 87 (94)
T 1b0x_A 39 DRYKDNFTAAGYTTLEAVVHMSQDDLARIGIT--AITHQNKILSSVQAMRT 87 (94)
T ss_dssp GGGHHHHHHTTCCSHHHHTTCCHHHHHHHTCC--CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHhhCCHHHHHHCCCC--ChhHHHHHHHHHHHHHH
Confidence 55666664 57 7899999999999886422 24699999877776553
No 30
>2es6_A VTS1P; SAM domain, protein structure, gene regulation; NMR {Saccharomyces cerevisiae} PDB: 2ese_A
Probab=66.30 E-value=8.5 Score=31.30 Aligned_cols=46 Identities=7% Similarity=-0.001 Sum_probs=36.5
Q ss_pred HHHHHHhcCCCHHHHhcCCHHHHHHhhCCCcchhchhhHHHHHHhHHH
Q 021082 175 ELFREAFGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKC 222 (317)
Q Consensus 175 ~~fr~AF~~FD~~~VA~~~eedie~L~~d~~IIRnr~KI~AVi~NAr~ 222 (317)
.-|.+.|.+-+.+.+..++|+|++++=- ...-+|+||...|..-|.
T Consensus 44 hKY~~~F~~~~~~~l~~LTdedL~~~GV--ta~GARrKiL~aI~~Lr~ 89 (101)
T 2es6_A 44 HKYSDALSGTPWIELIYLDDETLEKKGV--LALGARRKLLKAFGIVID 89 (101)
T ss_dssp CCTHHHHTTSCHHHHTTCCHHHHHHHTC--CSHHHHHHHHHHHHHHHH
T ss_pred cchHHHHccCCHHHHHhcCHHHHHHcCC--ccHhHHHHHHHHHHHHHH
Confidence 4577888888999999999999999753 345789999988875443
No 31
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=66.26 E-value=6.4 Score=27.02 Aligned_cols=30 Identities=17% Similarity=0.196 Sum_probs=26.7
Q ss_pred HHHHHHHHHHcCCcccChhhHHHHHHHhccc
Q 021082 263 AEAISRDLLKRGFRLVGPVIVYSFMQAAGLT 293 (317)
Q Consensus 263 S~~lsKdLKkrGFkFVGPttvysFMQAvG~v 293 (317)
...|+..|+++|. -|+..|+|-.|...|++
T Consensus 22 ~~el~~~l~~~~~-~vs~~Tv~R~L~~lg~v 51 (64)
T 2p5k_A 22 QDELVDMLKQDGY-KVTQATVSRDIKELHLV 51 (64)
T ss_dssp HHHHHHHHHHTTC-CCCHHHHHHHHHHHTCE
T ss_pred HHHHHHHHHHhCC-CcCHHHHHHHHHHcCCE
Confidence 5689999999986 58999999999999988
No 32
>3kka_C Ephrin type-A receptor 2; ATP-binding, kinase, nucleotide-binding, transferase, tyrosine-protein kinase, signal, sterIle alpha motif; 2.40A {Homo sapiens} SCOP: a.60.1.0
Probab=63.72 E-value=7.9 Score=29.90 Aligned_cols=41 Identities=20% Similarity=0.345 Sum_probs=31.7
Q ss_pred HHHHHHh--cCCC-HHHHhcCCHHHHHHhhCCCcc--hhchhhHHHHHHh
Q 021082 175 ELFREAF--GGFD-PKSVAKMGEKEILEISSNTAI--MLAECRVRCIVDN 219 (317)
Q Consensus 175 ~~fr~AF--~~FD-~~~VA~~~eedie~L~~d~~I--IRnr~KI~AVi~N 219 (317)
+.|.+.| .+|| .+.|+.++++|+.+| +| +-||+||-..|..
T Consensus 34 ~qY~~~F~~~g~d~le~l~~lt~~DL~~L----GIt~~GHRkkIL~ai~~ 79 (86)
T 3kka_C 34 QQYTEHFMAAGYTAIEKVVQMTNDDIKRI----GVRLPGHQKRIAYSLLG 79 (86)
T ss_dssp GGGHHHHHHTTCCSHHHHHTCCHHHHHHT----TCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHhCCHHHHHHC----CCCCHHHHHHHHHHHHH
Confidence 5566666 4688 899999999999976 44 3599999877654
No 33
>1x40_A ARAP2; ASAP-related protein2, GTPase activity, signal transduction, SAM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.1.2
Probab=63.68 E-value=5.7 Score=30.78 Aligned_cols=42 Identities=21% Similarity=0.245 Sum_probs=31.5
Q ss_pred HHHHHHhc--CCC-HHHHhcCCHHHHHHhhCCCcc--hhchhhHHHHHHhH
Q 021082 175 ELFREAFG--GFD-PKSVAKMGEKEILEISSNTAI--MLAECRVRCIVDNA 220 (317)
Q Consensus 175 ~~fr~AF~--~FD-~~~VA~~~eedie~L~~d~~I--IRnr~KI~AVi~NA 220 (317)
+.|.+.|. +|| .+.|+.++++|+.+| +| .-||+||...|..-
T Consensus 28 ~qY~~~F~~~g~~~~~~l~~lt~~DL~~l----GI~~~GHrkkIl~ai~~L 74 (91)
T 1x40_A 28 EQYLLHFHESGFTTVKDCAAINDSLLQKI----GISPTGHRRRILKQLQII 74 (91)
T ss_dssp GGGHHHHHHHTCCBSGGGGGCCHHHHHHH----TCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcHHHHhhcCHHHHHHC----CCCCHhHHHHHHHHHHHH
Confidence 45666663 574 789999999999987 44 57999998766553
No 34
>2e8n_A Ephrin type-A receptor 2; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=63.45 E-value=6.3 Score=30.16 Aligned_cols=46 Identities=17% Similarity=0.285 Sum_probs=33.5
Q ss_pred HHHHHHh--cCCC-HHHHhcCCHHHHHHhhCCCcchhchhhHHHHHHhHHH
Q 021082 175 ELFREAF--GGFD-PKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKC 222 (317)
Q Consensus 175 ~~fr~AF--~~FD-~~~VA~~~eedie~L~~d~~IIRnr~KI~AVi~NAr~ 222 (317)
+.|...| .+|| .+.+..|+++|+.+|=-. .+-||+||...|..-+.
T Consensus 25 ~~Y~~~F~~~~~~~~~~l~~lt~~dL~~lGI~--~~GhRkkIl~ai~~l~~ 73 (88)
T 2e8n_A 25 QQYTEHFMAAGYTAIEKVVQMTNDDVKRIGVR--LPGHQKRIAYSLLGLKD 73 (88)
T ss_dssp GGGHHHHHHHTCSSHHHHTTSCTTHHHHTTCC--SHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHhCCHHHHHHCCCC--ChhHHHHHHHHHHHHHH
Confidence 4556666 3688 899999999999886322 24599999877766543
No 35
>2eao_A Ephrin type-B receptor 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=63.10 E-value=9.3 Score=29.88 Aligned_cols=45 Identities=18% Similarity=0.398 Sum_probs=32.0
Q ss_pred HHHHHHh--cCCC-HHHHhcCCHHHHHHhhCCCcchhchhhHHHHHHhHH
Q 021082 175 ELFREAF--GGFD-PKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAK 221 (317)
Q Consensus 175 ~~fr~AF--~~FD-~~~VA~~~eedie~L~~d~~IIRnr~KI~AVi~NAr 221 (317)
+.|.+.| .+|| .+.+..|+++|+.+|=-. .+-||+||...|..-+
T Consensus 35 ~~Y~~~F~~~~~~~~~~L~~lt~~DL~~lGI~--~~GhRkkIl~ai~~l~ 82 (99)
T 2eao_A 35 VQYRDSFLTAGFTSLQLVTQMTSEDLLRIGIT--LAGHQKKILNSIHSMR 82 (99)
T ss_dssp GGGHHHHHHHTCCBHHHHTTCCHHHHHHHTCC--CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHhhCCHHHHHHCCCC--ChhHHHHHHHHHHHHH
Confidence 3455555 3688 899999999999986322 2459999987665533
No 36
>3hil_A Ephrin type-A receptor 1; ATP-binding, kinase, nucleotide-binding, transferase, tyrosine-protein kinase, signal, sterIle alpha motif; 2.00A {Homo sapiens} PDB: 3kka_A
Probab=62.78 E-value=5.2 Score=30.69 Aligned_cols=40 Identities=18% Similarity=0.398 Sum_probs=30.5
Q ss_pred HHHHHHh--cCCC-HHHHhcCCHHHHHHhhCCCcc--hhchhhHHHHHH
Q 021082 175 ELFREAF--GGFD-PKSVAKMGEKEILEISSNTAI--MLAECRVRCIVD 218 (317)
Q Consensus 175 ~~fr~AF--~~FD-~~~VA~~~eedie~L~~d~~I--IRnr~KI~AVi~ 218 (317)
+.|.+.| .+|| .+.|+.++++|+.+| +| +-||+||-..|.
T Consensus 36 ~qY~~~F~~~g~~s~e~l~~lt~~DL~~l----GIt~~GHRkkIL~aiq 80 (82)
T 3hil_A 36 KRYILHFHSAGLDTMECVLELTAEDLTQM----GITLPGHQKRILCSIQ 80 (82)
T ss_dssp GGGHHHHHHTTCCSGGGGTTCCHHHHHHT----TCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHhcCCHHHHHHC----CCCCHHHHHHHHHHHH
Confidence 4555666 4788 889999999999877 55 358999876654
No 37
>3k1r_B Usher syndrome type-1G protein; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens}
Probab=59.79 E-value=19 Score=26.83 Aligned_cols=43 Identities=14% Similarity=0.181 Sum_probs=33.4
Q ss_pred HHHHHHhcCCCHHHHhcCCHHHHHHhhCCCcchhchhhHHHHHHhHHH
Q 021082 175 ELFREAFGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKC 222 (317)
Q Consensus 175 ~~fr~AF~~FD~~~VA~~~eedie~L~~d~~IIRnr~KI~AVi~NAr~ 222 (317)
+.|.+ .++|.+.+..|+++|+.+|=-. +=+|+||-..|..=+.
T Consensus 19 ~~F~~--~~id~e~l~~lt~~DL~~lGI~---~G~RkkIl~ai~~~~~ 61 (74)
T 3k1r_B 19 ALLRQ--EKIDLEALMLCSDLDLRSISVP---LGPREKILGAVRRRRQ 61 (74)
T ss_dssp HHHHH--TTCCHHHHTTCCHHHHHHTTCC---HHHHHHHHHHHHHHHH
T ss_pred HHHHH--cCcCHHHHhHCCHHHHHHcCCC---cchHHHHHHHHHHHHH
Confidence 55555 5789999999999999988665 5599999877754443
No 38
>2dl0_A SAM and SH3 domain-containing protein 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.63 E-value=6.5 Score=31.05 Aligned_cols=43 Identities=9% Similarity=0.115 Sum_probs=32.9
Q ss_pred HHHHHHh--cCCC-HHHHhcCCHHHHHHhhCCCcchhchhhHHHHHHh
Q 021082 175 ELFREAF--GGFD-PKSVAKMGEKEILEISSNTAIMLAECRVRCIVDN 219 (317)
Q Consensus 175 ~~fr~AF--~~FD-~~~VA~~~eedie~L~~d~~IIRnr~KI~AVi~N 219 (317)
+.|.+.| .||| .+.|..++++|+.+|=-. ...||+||.+.|..
T Consensus 36 ~qY~~~F~~~g~d~le~l~~lt~~DL~~lGIt--~~gHrkkIl~ai~~ 81 (97)
T 2dl0_A 36 PMYAGTLSTAGFSTLSQVPSLSHTCLQEAGIT--EERHIRKLLSAARL 81 (97)
T ss_dssp GGGHHHHHHHTCCSTTSGGGCCHHHHHHHTCC--CHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCcHHHHHhcCHHHHHHCCCC--CHHHHHHHHHHHHH
Confidence 5677777 4688 789999999999988432 25799999866654
No 39
>3sei_A Caskin-1; SAM domain, protein-protein interaction, signaling protein; 2.40A {Homo sapiens} PDB: 3sen_A
Probab=51.99 E-value=11 Score=31.67 Aligned_cols=43 Identities=14% Similarity=0.334 Sum_probs=31.9
Q ss_pred HHHHHHhc--CCCHHHHhcCCHHHHHHhhCCCcchhchhhHHHHHHh
Q 021082 175 ELFREAFG--GFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDN 219 (317)
Q Consensus 175 ~~fr~AF~--~FD~~~VA~~~eedie~L~~d~~IIRnr~KI~AVi~N 219 (317)
+.|.+.|. +||.+.+..|+++|+.+|=-.. .-||+||...|..
T Consensus 23 ~~Y~~~F~~~g~d~~~l~~lt~~DL~~lGIt~--~gHrkkil~ai~~ 67 (149)
T 3sei_A 23 QLYAPNFISAGYDLPTISRMTPEDLTAIGVTK--PGHRKKIAAEISG 67 (149)
T ss_dssp GGGHHHHHHTTCCHHHHTTCCHHHHHHTTCCS--HHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHccCCHHHHHHcCCCC--HHHHHHHHHHHHH
Confidence 45666675 8999999999999998763221 3589998766654
No 40
>2k4p_A Phosphatidylinositol-3,4,5-trisphosphate 5- phosphatase 2; helix bundle, signaling protein, actin-binding, alternative splicing, cell adhesion; NMR {Homo sapiens} PDB: 2kso_B
Probab=49.64 E-value=22 Score=27.43 Aligned_cols=42 Identities=14% Similarity=0.184 Sum_probs=31.5
Q ss_pred HHHHHHhc--CCC-HHHHhcCCHHHHHHhhCCCcchhchhhHHHHHH
Q 021082 175 ELFREAFG--GFD-PKSVAKMGEKEILEISSNTAIMLAECRVRCIVD 218 (317)
Q Consensus 175 ~~fr~AF~--~FD-~~~VA~~~eedie~L~~d~~IIRnr~KI~AVi~ 218 (317)
+.|.+.|. +|| .+.|+.++++|+.+|=-. .+-||+||...|.
T Consensus 39 ~qY~~~F~~~g~~~le~l~~lt~~DL~~lGIt--~~GHRkkIL~aI~ 83 (86)
T 2k4p_A 39 ERYEEGLVHNGWDDLEFLSDITEEDLEEAGVQ--DPAHKRLLLDTLQ 83 (86)
T ss_dssp GGGHHHHHTTTCCCHHHHTTCCHHHHHHTTCC--CHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHhCCHHHHHHCCCC--CHHHHHHHHHHHH
Confidence 66778884 674 899999999999886322 2568999976654
No 41
>2qkq_A Ephrin type-B receptor 4; ATP-binding, glycoprotein, kinase, membrane, nucleotide- binding, phosphorylation, repeat, signal, transferase; 2.10A {Homo sapiens}
Probab=42.78 E-value=32 Score=25.74 Aligned_cols=45 Identities=20% Similarity=0.402 Sum_probs=32.8
Q ss_pred HHHHHHhc--CC-CHHHHhcCCHHHHHHhhCCCcchhchhhHHHHHHhHH
Q 021082 175 ELFREAFG--GF-DPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAK 221 (317)
Q Consensus 175 ~~fr~AF~--~F-D~~~VA~~~eedie~L~~d~~IIRnr~KI~AVi~NAr 221 (317)
+.|...|. +| |.+.+..++++|+.+|=-. ..-||+||...|..-+
T Consensus 28 ~~Y~~~F~~~~~~~~~~l~~lt~~dL~~lGI~--~~GhrkkIl~ai~~l~ 75 (83)
T 2qkq_A 28 GRYEESFAAAGFGSFELVSQISAEDLLRIGVT--LAGHQKKILASVQHMK 75 (83)
T ss_dssp GGGHHHHHHTTCCSHHHHTTCCHHHHHHHTCC--CHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHcCCCcHHHHhhCCHHHHHHCCCC--CHHHHHHHHHHHHHHH
Confidence 45777775 54 7899999999999986322 2569999987766544
No 42
>2kg5_A ARF-GAP, RHO-GAP domain, ANK repeat and PH domain-containing protein 3; SAM domain, helix bundle, cell membrane, cell projection, cytoplasm; NMR {Homo sapiens}
Probab=42.70 E-value=30 Score=27.28 Aligned_cols=43 Identities=14% Similarity=0.328 Sum_probs=31.9
Q ss_pred HHHHHHh--cCCC-HHHHhcCCHHHHHHhhCCCcchhchhhHHHHHHh
Q 021082 175 ELFREAF--GGFD-PKSVAKMGEKEILEISSNTAIMLAECRVRCIVDN 219 (317)
Q Consensus 175 ~~fr~AF--~~FD-~~~VA~~~eedie~L~~d~~IIRnr~KI~AVi~N 219 (317)
+.|.+.| .+|| .+.+..++++|+.+|=-. .+-||+||...|..
T Consensus 39 ~qY~~~F~~~gid~~~~L~~Lt~eDLkeLGIt--~~GhRkkIL~aI~~ 84 (100)
T 2kg5_A 39 EQYADTFRRHGLATAGAARGLGHEELKQLGIS--ATGHRKRILRLLQT 84 (100)
T ss_dssp GGGHHHHHHTTCCBHHHHTTCCHHHHHHHTCC--CHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCChHHHHHhcCHHHHHHCCCC--ChhHHHHHHHHHHH
Confidence 4566666 4788 899999999999987332 25699999766654
No 43
>1oxj_A RNA-binding protein smaug; SAM domain, PHAT domain; 1.80A {Drosophila melanogaster} SCOP: a.60.1.2 a.118.1.13
Probab=41.60 E-value=28 Score=30.77 Aligned_cols=44 Identities=14% Similarity=0.158 Sum_probs=36.5
Q ss_pred HHHHHHhcCCCHHHHhcCCHHHHHHhhCCCcchhchhhHHHHHHhHH
Q 021082 175 ELFREAFGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAK 221 (317)
Q Consensus 175 ~~fr~AF~~FD~~~VA~~~eedie~L~~d~~IIRnr~KI~AVi~NAr 221 (317)
.-|.+.|.+.+.+.+..|+|+|++++=-. . -+|+||...|..-|
T Consensus 20 hKY~~~F~~~~~e~~~~LTdedL~~~GVT--~-GARrKIL~aIq~Lr 63 (173)
T 1oxj_A 20 HKYIELFKNMTYEEMLLITEDFLQSVGVT--K-GASHKLALCIDKLK 63 (173)
T ss_dssp GGGGGGGTTCCHHHHTTCCHHHHHHTTCC--H-HHHHHHHHHHHHHH
T ss_pred chhHHHHccCCHHHHHhcCHHHHHHCCCc--h-HHHHHHHHHHHHHH
Confidence 45788999999999999999999998655 2 89999887776544
No 44
>2lfe_A E3 ubiquitin-protein ligase HECW2; structural genomics, northeast structural genomics consortiu SGC; NMR {Homo sapiens}
Probab=39.53 E-value=6.8 Score=33.38 Aligned_cols=25 Identities=44% Similarity=0.482 Sum_probs=6.3
Q ss_pred ccccceecccC------cccccccccccccC
Q 021082 36 VYPIGLHRSSS------SLSLSSLSLSLSQN 60 (317)
Q Consensus 36 ~yp~~~~~s~s------~~slss~s~slsqn 60 (317)
.+|+||+||+| +-|-|||+.|.+|-
T Consensus 14 ~~~~~l~Rs~SDtdLvt~~sRSsLt~S~~~y 44 (138)
T 2lfe_A 14 LYFQGLQRANSDTDLVTSESRSSLTASMYEY 44 (138)
T ss_dssp -------------------CCCEEEESCSEE
T ss_pred ccccccccccCccceecccccceeEEEeeEE
Confidence 68999999999 33456665554443
No 45
>2lc0_A Putative uncharacterized protein TB39.8; FHAA, kinase substrate, protein binding; NMR {Mycobacterium tuberculosis}
Probab=37.81 E-value=11 Score=31.51 Aligned_cols=25 Identities=20% Similarity=0.363 Sum_probs=21.2
Q ss_pred CHHHHHHHHHHHHcCCcccChhhHH
Q 021082 260 SPKAEAISRDLLKRGFRLVGPVIVY 284 (317)
Q Consensus 260 t~lS~~lsKdLKkrGFkFVGPttvy 284 (317)
.++++.+.+....+||.|+||++|.
T Consensus 83 ~el~~~l~~~a~~qgy~~~G~v~V~ 107 (132)
T 2lc0_A 83 TGFARDLADYIQEQGWQTYGDVVVR 107 (132)
T ss_dssp HHHHHHHHHHHHHHTCBCSSCCEEE
T ss_pred HHHHHHHHHHHHHCCCeecCCeEEE
Confidence 4677788888889999999999875
No 46
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=36.59 E-value=24 Score=29.06 Aligned_cols=32 Identities=19% Similarity=0.447 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHcCCcccChhhHHHHHHHhcc
Q 021082 261 PKAEAISRDLLKRGFRLVGPVIVYSFMQAAGL 292 (317)
Q Consensus 261 ~lS~~lsKdLKkrGFkFVGPttvysFMQAvG~ 292 (317)
+....+++.|...||+++..-..+.||+..|+
T Consensus 37 ~~l~~~a~~l~~lGf~i~AT~GTa~~L~~~Gi 68 (143)
T 2yvq_A 37 PRFLGVAEQLHNEGFKLFATEATSDWLNANNV 68 (143)
T ss_dssp HHHHHHHHHHHTTTCEEEEEHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHCCCEEEECchHHHHHHHcCC
Confidence 44567999999999999988888999999985
No 47
>3sei_A Caskin-1; SAM domain, protein-protein interaction, signaling protein; 2.40A {Homo sapiens} PDB: 3sen_A
Probab=36.55 E-value=57 Score=27.20 Aligned_cols=47 Identities=9% Similarity=0.179 Sum_probs=33.7
Q ss_pred HHHHHHh--cCCC-HHHHhcCCHHHHHHhhCCCcchhchhhHHHHHHhHHHH
Q 021082 175 ELFREAF--GGFD-PKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCI 223 (317)
Q Consensus 175 ~~fr~AF--~~FD-~~~VA~~~eedie~L~~d~~IIRnr~KI~AVi~NAr~i 223 (317)
+.|.+.| .||| .+.|..++++|+.+|=-. ..-||+||-..|..-+.+
T Consensus 92 ~qY~~~F~~~g~d~~~~l~~lt~~dL~~lGI~--~~gHr~kIl~ai~~l~~~ 141 (149)
T 3sei_A 92 AQYYKVLVDNGYENIDFITDITWEDLQEIGIT--KLGHQKKLMLAVRKLAEL 141 (149)
T ss_dssp GGGHHHHHHTTCCSHHHHTTCCHHHHHHHTCC--CHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHCCCchHHHHhhCCHHHHHHCCCC--CHHHHHHHHHHHHHHHHH
Confidence 3455555 5798 899999999999876322 146899998887655544
No 48
>2cme_A ORF-9B, ORF13, hypothetical protein 5; alternative open reading frame, lipid-binding, virus assembly; HET: D10; 2.8A {Human sars coronavirus} SCOP: b.164.1.1 PDB: 2cme_B* 2cme_E* 2cme_C*
Probab=35.33 E-value=9.5 Score=29.16 Aligned_cols=19 Identities=63% Similarity=0.716 Sum_probs=14.5
Q ss_pred ccccccceecccCccccccc
Q 021082 34 KKVYPIGLHRSSSSLSLSSL 53 (317)
Q Consensus 34 ~~~yp~~~~~s~s~~slss~ 53 (317)
-|||||-| |=.|.||||-+
T Consensus 20 ~kvypiil-rlgs~lslsm~ 38 (78)
T 2cme_A 20 PKVYPIIL-RLGSNLSLSMA 38 (78)
T ss_dssp CCEEEEEE-CCSSCCEEEEE
T ss_pred Cceeeeee-eeccccchHHH
Confidence 47999965 67788888765
No 49
>2lmr_A ODIN, ankyrin repeat and SAM domain-containing protein; signaling protein; NMR {Homo sapiens}
Probab=33.32 E-value=22 Score=28.26 Aligned_cols=43 Identities=14% Similarity=0.199 Sum_probs=31.6
Q ss_pred HHHHHHhc--CCC-HHHHh--cCCHHHHHHhhCCCcchhchhhHHHHHHh
Q 021082 175 ELFREAFG--GFD-PKSVA--KMGEKEILEISSNTAIMLAECRVRCIVDN 219 (317)
Q Consensus 175 ~~fr~AF~--~FD-~~~VA--~~~eedie~L~~d~~IIRnr~KI~AVi~N 219 (317)
+.|.+.|. +|| .+.|+ .++++|+.+|=-. .+-||+||...|..
T Consensus 42 ~qY~~~F~~~g~d~~e~l~~~~Lt~eDL~eLGIt--~~GHRkkIL~aI~~ 89 (101)
T 2lmr_A 42 QQYESKLLLNGFDDVHFLGSNVMEEQDLRDIGIS--DPQHRRKLLQAARS 89 (101)
T ss_dssp GGGHHHHHHTTCCCTTSTTTSCCCHHHHHHHTCC--CHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCChHHHHhhccCCHHHHHHCCCC--CHHHHHHHHHHHHH
Confidence 66777774 576 67888 8999999887432 24699999876654
No 50
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Probab=31.60 E-value=55 Score=24.92 Aligned_cols=61 Identities=13% Similarity=0.212 Sum_probs=46.4
Q ss_pred HHHHHHHhcCCCHHHHhcCCHHHHHHhhCCCcchhchhhHHHHHHhHHHHHHHHHhcCCHHHhccccC
Q 021082 174 KELFREAFGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIVKILNEFGSFSSFMWGYV 241 (317)
Q Consensus 174 R~~fr~AF~~FD~~~VA~~~eedie~L~~d~~IIRnr~KI~AVi~NAr~il~i~~E~GSF~~ylWsfv 241 (317)
...++++|..||...=-.++.+++..++..-++--....|..++... ...-+|.+|+-.+.
T Consensus 15 ~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~-------~g~i~~~eF~~~~~ 75 (153)
T 2ovk_B 15 MQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPPDDELNAMLKEC-------PGQLNFTAFLTLFG 75 (153)
T ss_dssp HHHHHHHHHHHCCSTTTCCCHHHHHHHTTTTTSCCCHHHHHHHHHHS-------SSCCCSHHHHHTTT
T ss_pred HHHHHHHHHHhCCCCCCeECHHHHHHHHHHhCCCCCHHHHHHHHHHc-------CCCCCHHHHHHHHH
Confidence 36788999999998888899999999998877766777777776654 22237888876553
No 51
>2gle_A Neurabin-1; SAM domain, scaffold, protein protein interaction, protein binding; NMR {Rattus norvegicus}
Probab=29.67 E-value=1.4e+02 Score=21.29 Aligned_cols=44 Identities=7% Similarity=0.211 Sum_probs=32.4
Q ss_pred HHHHHHhc--CCCHHHHhcCCHHHHHHhhCCCcc--hhchhhHHHHHHhHHH
Q 021082 175 ELFREAFG--GFDPKSVAKMGEKEILEISSNTAI--MLAECRVRCIVDNAKC 222 (317)
Q Consensus 175 ~~fr~AF~--~FD~~~VA~~~eedie~L~~d~~I--IRnr~KI~AVi~NAr~ 222 (317)
+.|...|. +.|-..+..++++++.+| +| +-||.||...|..-+.
T Consensus 22 ~~y~~~F~~~~i~g~~Ll~l~~~dL~~l----GI~~~g~r~kil~~i~~L~~ 69 (74)
T 2gle_A 22 DQYVSEFSAQNISGEQLLQLDGNKLKAL----GMTSSQDRALVKKKLKEMKM 69 (74)
T ss_dssp HHHHHHHTTTTCCHHHHHTCCHHHHHTT----TCCCHHHHHHHHHHHHSHHH
T ss_pred HHHHHHHHHcCCCHHHHhhCCHHHHHHc----CCCCHHHHHHHHHHHHHHHH
Confidence 45777774 567799999999997654 44 5689999877776553
No 52
>1kdx_B CREB; complex (transcription activator/CO-activator), protein- protein interaction, phosphoserine recognition; HET: SEP; NMR {Rattus norvegicus}
Probab=28.43 E-value=7.9 Score=24.91 Aligned_cols=17 Identities=29% Similarity=0.608 Sum_probs=14.6
Q ss_pred HHHHHhHHHHHHHhcCC
Q 021082 168 TEILKRKELFREAFGGF 184 (317)
Q Consensus 168 ~tILkKR~~fr~AF~~F 184 (317)
..||.+|+.||+.|.+|
T Consensus 7 r~iL~rrpSYrkIlndl 23 (28)
T 1kdx_B 7 REILSRRPSYRKILNDL 23 (28)
T ss_dssp HHHHTTSTHHHHHHHHH
T ss_pred hhhhhcCchHHHHHHhh
Confidence 46899999999998765
No 53
>2ean_A Connector enhancer of kinase suppressor of RAS 2; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.32 E-value=94 Score=22.90 Aligned_cols=39 Identities=8% Similarity=0.043 Sum_probs=29.3
Q ss_pred cCCCHHHHhcCCHHHHHHhhCCCcchhchhhHHHHHHhHHH
Q 021082 182 GGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKC 222 (317)
Q Consensus 182 ~~FD~~~VA~~~eedie~L~~d~~IIRnr~KI~AVi~NAr~ 222 (317)
.+.|-+.+..++++|+.+|--. -+-||.||...|..-+.
T Consensus 37 ~~I~G~~Ll~Lt~~dL~~LGI~--~~ghr~~il~~I~~L~~ 75 (83)
T 2ean_A 37 EKISGDQLLRITHQELEDLGVS--RIGHQELILEAVDLLCA 75 (83)
T ss_dssp HTCCHHHHTTCCHHHHHHHTCC--CSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHhhCCHHHHHHhCCC--CHHHHHHHHHHHHHHHH
Confidence 4678899999999999886332 25689999877766554
No 54
>2p4g_A Hypothetical protein; pyrimidine reductase-like protein, structural genomics, JOIN for structural genomics, JCSG; 2.30A {Corynebacterium diphtheriae}
Probab=27.93 E-value=43 Score=30.09 Aligned_cols=31 Identities=16% Similarity=0.202 Sum_probs=25.5
Q ss_pred HHHHHHHHHcCCc----ccChhhHHHHHHHhccccc
Q 021082 264 EAISRDLLKRGFR----LVGPVIVYSFMQAAGLTID 295 (317)
Q Consensus 264 ~~lsKdLKkrGFk----FVGPttvysFMQAvG~vnD 295 (317)
..+-+.|+++|.+ ..|++++-+||++ |+|+.
T Consensus 177 ~~~l~~L~~~g~~~vlvEGG~~l~~sfL~a-gLVDE 211 (270)
T 2p4g_A 177 KIAFDALHARRLKKISIEGGPSVYRQALSL-GIVDR 211 (270)
T ss_dssp HHHHHHHHTTTCCEEEEEECHHHHHHHHHH-TCCCE
T ss_pred HHHHHHHHHCCCCEEEEecCHHHHHHHHHC-CCCeE
Confidence 3566789999998 5699999999876 88874
No 55
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A 1f8h_A 1ff1_A
Probab=26.88 E-value=21 Score=27.78 Aligned_cols=42 Identities=12% Similarity=0.246 Sum_probs=30.5
Q ss_pred ccccHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhhCCCc
Q 021082 163 MDYNWTEILKRKELFREAFGGFDPKSVAKMGEKEILEISSNTA 205 (317)
Q Consensus 163 AGLSW~tILkKR~~fr~AF~~FD~~~VA~~~eedie~L~~d~~ 205 (317)
.|..|..--..+..|+++|.-||. .=-.++-+++..+|..-+
T Consensus 3 ~~~~w~ls~~e~~~~~~~F~~~D~-~dG~Is~~el~~~l~~~g 44 (106)
T 1eh2_A 3 WGSPWAVKPEDKAKYDAIFDSLSP-VNGFLSGDKVKPVLLNSK 44 (106)
T ss_dssp ---CCSSCHHHHHHHHHHHTTSCC-SSSCCBHHHHHHHHHTTT
T ss_pred cCCCCCCCHHHHHHHHHHHHHhCC-CCCeEcHHHHHHHHHHcC
Confidence 455666545677889999999998 545678888888887655
No 56
>3bs5_B Connector enhancer of kinase suppressor of RAS 2; sterIle alpha motif, SAM domain, SAM domain dimer, SAM domain complex, cytoplasm, membrane; 2.00A {Homo sapiens}
Probab=26.17 E-value=1.3e+02 Score=21.93 Aligned_cols=43 Identities=9% Similarity=0.118 Sum_probs=30.3
Q ss_pred HHHHh--cCCCHHHHhcCCHHHHHHhhCCCcchhchhhHHHHHHhHH
Q 021082 177 FREAF--GGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAK 221 (317)
Q Consensus 177 fr~AF--~~FD~~~VA~~~eedie~L~~d~~IIRnr~KI~AVi~NAr 221 (317)
|.+.| .+.|-..+..++++++.+|--. -+-||.||...|..-+
T Consensus 26 Y~~~F~~~~i~G~~Ll~L~~~dL~~lGI~--~~ghr~~il~~I~~L~ 70 (80)
T 3bs5_B 26 YIKNFEREKISGDQLLRITHQELEDLGVS--RIGHQELILEAVDLLC 70 (80)
T ss_dssp GHHHHHHHTCCHHHHHTCCHHHHHHTTCC--CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHCCHHHHHHcCCC--CHHHHHHHHHHHHHHH
Confidence 34444 5678899999999999875322 1568899987666544
No 57
>2b1u_A Calmodulin-like protein 5; CLSP, calmodulin-like SKIN protein, solution structure, backbone dynamic, structural genomics; NMR {Homo sapiens}
Probab=24.34 E-value=32 Score=22.82 Aligned_cols=34 Identities=18% Similarity=0.173 Sum_probs=27.4
Q ss_pred HHHHHHHhcCCCHHHHhcCCHHHHHHhhCCCcch
Q 021082 174 KELFREAFGGFDPKSVAKMGEKEILEISSNTAIM 207 (317)
Q Consensus 174 R~~fr~AF~~FD~~~VA~~~eedie~L~~d~~II 207 (317)
.+.++++|.-||...=-.++.+++..++..-+.-
T Consensus 5 ~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~ 38 (71)
T 2b1u_A 5 LEDLQVAFRAFDQDGDGHITVDELRRAMAGLGQP 38 (71)
T ss_dssp HHHHHHHHTTSCCSSSSEEEHHHHHHHGGGTTCS
T ss_pred HHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCC
Confidence 4678999999998877778899999888765543
No 58
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially structured protein, CAM-like; NMR {Entamoeba histolytica} PDB: 2lc5_A
Probab=23.66 E-value=28 Score=24.18 Aligned_cols=45 Identities=20% Similarity=0.283 Sum_probs=32.9
Q ss_pred hHHHHHHHhcCCCHHHHhcCCHHHHHHhhCCCcchhchhhHHHHH
Q 021082 173 RKELFREAFGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIV 217 (317)
Q Consensus 173 KR~~fr~AF~~FD~~~VA~~~eedie~L~~d~~IIRnr~KI~AVi 217 (317)
....++++|.-||...=-.++.+++..++..-++--....+..++
T Consensus 12 ~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~ 56 (85)
T 2ktg_A 12 EQQEYKEAFQLFDKDNDNKLTAEELGTVMRALGANPTKQKISEIV 56 (85)
T ss_dssp HHHHHHHHHHHTCTTCCSEEEHHHHHHHHHTTSSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 356789999999988766788899998887766544544554443
No 59
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=23.14 E-value=19 Score=27.46 Aligned_cols=44 Identities=25% Similarity=0.321 Sum_probs=34.3
Q ss_pred HHHHHHhcCCCHHHHhcCCHHHHHHhhCCCcchhchhhHHHHHH
Q 021082 175 ELFREAFGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVD 218 (317)
Q Consensus 175 ~~fr~AF~~FD~~~VA~~~eedie~L~~d~~IIRnr~KI~AVi~ 218 (317)
..+++||.-||...=-.++-+++..+|..-++--....|+.++.
T Consensus 36 ~el~~~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~~ 79 (100)
T 2lv7_A 36 EEIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQ 79 (100)
T ss_dssp HHHHHHHHHTCSSCSSCBCHHHHHHHHHHHTCCCCTTTHHHHHH
T ss_pred HHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 45789999999998888999999998877666556666665543
No 60
>2azn_A HTP reductase, putative 5-amino-6-(5-phosphoribosylamino)uracil; oxidoreductase; HET: MA5 NAP EPE; 2.70A {Methanocaldococcus jannaschii} SCOP: c.71.1.2
Probab=23.04 E-value=60 Score=27.79 Aligned_cols=31 Identities=16% Similarity=0.365 Sum_probs=24.6
Q ss_pred HHHHHHHHHcCCc----ccChhhHHHHHHHhccccc
Q 021082 264 EAISRDLLKRGFR----LVGPVIVYSFMQAAGLTID 295 (317)
Q Consensus 264 ~~lsKdLKkrGFk----FVGPttvysFMQAvG~vnD 295 (317)
..+-+.|+++|.+ ..|++++-+||++ |+|+.
T Consensus 132 ~~~l~~L~~~g~~~ilveGG~~l~~s~l~~-gLvDe 166 (219)
T 2azn_A 132 KKLMDILYDKGIKSILLEGGGTLNWGMFKE-GLVDE 166 (219)
T ss_dssp HHHHHHHHHTTCCEEEEEECHHHHHHHHHT-TCCCE
T ss_pred HHHHHHHHHcCCCEEEEeeCHHHHHHHHHC-CCCcE
Confidence 3567889999988 3599999999765 88764
No 61
>2xw6_A MGS, methylglyoxal synthase; lyase; 1.08A {Thermus SP} PDB: 2x8w_A 1wo8_A
Probab=21.44 E-value=60 Score=27.12 Aligned_cols=32 Identities=19% Similarity=0.159 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHc--CCcccChhhHHHHHHH-hcc
Q 021082 261 PKAEAISRDLLKR--GFRLVGPVIVYSFMQA-AGL 292 (317)
Q Consensus 261 ~lS~~lsKdLKkr--GFkFVGPttvysFMQA-vG~ 292 (317)
+....+++.++.. ||+.++.-+...+|+. .|+
T Consensus 16 ~~~v~~a~~~~~ll~Gf~l~AT~gTa~~L~e~~Gl 50 (134)
T 2xw6_A 16 EEMVAFCQRHREVLARFPLVATGTTGRRIEEATGL 50 (134)
T ss_dssp HHHHHHHHHTHHHHTTSCEEECHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHhCCCEEEEccHHHHHHHHhhCc
Confidence 5677899999999 9999999999999998 896
No 62
>1k94_A Grancalcin; penta-EF-hand protein, calcium binding protein, metal binding protein; 1.70A {Homo sapiens} SCOP: a.39.1.8 PDB: 1k95_A 1f4q_A 1f4o_A
Probab=21.14 E-value=42 Score=26.14 Aligned_cols=50 Identities=14% Similarity=0.183 Sum_probs=36.3
Q ss_pred HHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhhCCCcchhchhhHHHHHHh
Q 021082 170 ILKRKELFREAFGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDN 219 (317)
Q Consensus 170 ILkKR~~fr~AF~~FD~~~VA~~~eedie~L~~d~~IIRnr~KI~AVi~N 219 (317)
++.+.+.++++|..||...=-.++.+++..++..-+.--....+..++..
T Consensus 65 ~~~~~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~ 114 (165)
T 1k94_A 65 LWAALNAWKENFMTVDQDGSGTVEHHELRQAIGLMGYRLSPQTLTTIVKR 114 (165)
T ss_dssp HHHHHHHHHHHHHHHCTTCCSBCCHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCceECHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 33445789999999999887789999999888765544455555555543
No 63
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B* 1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B* 1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Probab=20.43 E-value=40 Score=26.12 Aligned_cols=61 Identities=16% Similarity=0.232 Sum_probs=41.5
Q ss_pred hHHHHHHHhcCCCHHHHhcCCHHHHHHhhCCCcc-hhchhhHHHHHHhHHHHHHHHHhcCCHHHhcccc
Q 021082 173 RKELFREAFGGFDPKSVAKMGEKEILEISSNTAI-MLAECRVRCIVDNAKCIVKILNEFGSFSSFMWGY 240 (317)
Q Consensus 173 KR~~fr~AF~~FD~~~VA~~~eedie~L~~d~~I-IRnr~KI~AVi~NAr~il~i~~E~GSF~~ylWsf 240 (317)
....++++|..||...=-.++.+++..++..-++ --....|..++.+. ...-+|.+|+-.+
T Consensus 23 ~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~l~~~~-------dg~i~~~eF~~~~ 84 (166)
T 2mys_B 23 EIEDFKEAFTVIDQNADGIIDKDDLRETFAAMGRLNVKNEELDAMIKEA-------SGPINFTVFLTMF 84 (166)
T ss_pred HHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHhCCCCCCHHHHHHHHHHC-------CCCcCHHHHHHHH
Confidence 3467899999999887777899999888876665 44555566666542 1122677776544
Done!