BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021086
(317 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YEQ|A Chain A, Structure Of Phod
pdb|2YEQ|B Chain B, Structure Of Phod
Length = 527
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 52/125 (41%), Gaps = 18/125 (14%)
Query: 136 IYTSYTFGPVGRQIKIILLDTRYHRD-PLSSDG-------------TILGSTQWTWLEKE 181
+Y +T+G + +LDTR +RD ++DG T+LG Q WL
Sbjct: 261 LYRHFTYGNLA---SFNVLDTRQYRDDQANNDGNKPPSDESRNPNRTLLGKEQEQWLFNN 317
Query: 182 LNGPXXXXXXXXXXXXXXX-NLSATTGPLFYMESWGRFPKERDRLFQLIADSKRNGVFFI 240
L N + P++ M+SW +P +R+R+ I N V +
Sbjct: 318 LGSSTAHWNVLAQQIFFAKWNFGTSASPIYSMDSWDGYPAQRERVINFIKSKNLNNVVVL 377
Query: 241 SGDVH 245
+GDVH
Sbjct: 378 TGDVH 382
>pdb|3IYP|F Chain F, The Interaction Of Decay-Accelerating Factor With
Echovirus 7
Length = 381
Score = 32.0 bits (71), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 234 RNGVFFISGDVHFGEITRYDCDVGYALYDITSS 266
RNG + G + FG + C+ GY L+ TSS
Sbjct: 170 RNGQIDVPGGILFGATISFSCNTGYKLFGSTSS 202
>pdb|1NWV|A Chain A, Solution Structure Of A Functionally Active Component Of
Decay Accelerating Factor
pdb|2QZH|A Chain A, Scr23 OF DAF FROM THE NMR STRUCTURE 1NWV FITTED INTO A
Cryoem Reconstruction Of Cvb3-Rd Complexed With Daf
Length = 129
Score = 31.6 bits (70), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 234 RNGVFFISGDVHFGEITRYDCDVGYALYDITSS 266
RNG + G + FG + C+ GY L+ TSS
Sbjct: 76 RNGQIDVPGGILFGATISFSCNTGYKLFGSTSS 108
>pdb|3VOC|A Chain A, Crystal Structure Of The Catalytic Domain Of Beta-amylase
From Paenibacillus Polymyxa
Length = 419
Score = 31.2 bits (69), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 8/76 (10%)
Query: 203 SATTGPLFYMESWGRFPKERDRLFQLIADSKRNGVFFISGDVHFGEI-TRYDCDVGYALY 261
++ GPL + WG F K+ L K NGV+ I+ DV +G + + D ++ Y
Sbjct: 8 ASVMGPLAKINDWGSFKKQLQTL-------KNNGVYAITTDVWWGYVESAGDNQFDWSYY 60
Query: 262 DITSSGLTQAVEKAVP 277
++ + +A K VP
Sbjct: 61 KTYANAVKEAGLKWVP 76
>pdb|1OK3|A Chain A, Decay Accelerating Factor (cd55): The Structure Of An
Intact Human Complement Regulator.
pdb|1OK3|B Chain B, Decay Accelerating Factor (cd55): The Structure Of An
Intact Human Complement Regulator
Length = 254
Score = 31.2 bits (69), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 234 RNGVFFISGDVHFGEITRYDCDVGYALYDITSS 266
RNG + G + FG + C+ GY L+ TSS
Sbjct: 138 RNGQIDVPGGILFGATISFSCNTGYKLFGSTSS 170
>pdb|2C8I|E Chain E, Complex Of Echovirus Type 12 With Domains 1, 2, 3 And 4 Of
Its Receptor Decay Accelerating Factor (Cd55) By Cryo
Electron Microscopy At 16 A
Length = 316
Score = 30.8 bits (68), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 234 RNGVFFISGDVHFGEITRYDCDVGYALYDITSS 266
RNG + G + FG + C+ GY L+ TSS
Sbjct: 201 RNGQIDVPGGILFGATISFSCNTGYKLFGSTSS 233
>pdb|1OJV|A Chain A, Decay Accelerating Factor (Cd55): The Structure Of An
Intact Human Complement Regulator.
pdb|1OJV|B Chain B, Decay Accelerating Factor (Cd55): The Structure Of An
Intact Human Complement Regulator.
pdb|1OJW|A Chain A, Decay Accelerating Factor (Cd55): The Structure Of An
Intact Human Complement Regulator.
pdb|1OJW|B Chain B, Decay Accelerating Factor (Cd55): The Structure Of An
Intact Human Complement Regulator.
pdb|1OJY|A Chain A, Decay Accelerating Factor (Cd55): The Structure Of An
Intact Human Complement Regulator.
pdb|1OJY|B Chain B, Decay Accelerating Factor (Cd55): The Structure Of An
Intact Human Complement Regulator.
pdb|1OJY|C Chain C, Decay Accelerating Factor (Cd55): The Structure Of An
Intact Human Complement Regulator.
pdb|1OJY|D Chain D, Decay Accelerating Factor (Cd55): The Structure Of An
Intact Human Complement Regulator.
pdb|1OK1|A Chain A, Decay Accelerating Factor (cd55): The Structure Of An
Intact Human Complement Regulator.
pdb|1OK1|B Chain B, Decay Accelerating Factor (cd55): The Structure Of An
Intact Human Complement Regulator.
pdb|1OK2|A Chain A, Decay Accelerating Factor (Cd55): The Structure Of An
Intact Human Complement Regulator.
pdb|1OK2|B Chain B, Decay Accelerating Factor (Cd55): The Structure Of An
Intact Human Complement Regulator.
pdb|1OK9|A Chain A, Decay Accelerating Factor (Cd55): The Structure Of An
Intact Human Complement Regulator.
pdb|1OK9|B Chain B, Decay Accelerating Factor (Cd55): The Structure Of An
Intact Human Complement Regulator.
pdb|3J24|B Chain B, Cryoem Reconstruction Of Complement Decay-Accelerating
Factor
Length = 254
Score = 30.8 bits (68), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 234 RNGVFFISGDVHFGEITRYDCDVGYALYDITSS 266
RNG + G + FG + C+ GY L+ TSS
Sbjct: 138 RNGQIDVPGGILFGATISFSCNTGYKLFGSTSS 170
>pdb|1M11|R Chain R, Structural Model Of Human Decay-accelerating Factor Bound
To Echovirus 7 From Cryo-electron Microscopy
Length = 243
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 234 RNGVFFISGDVHFGEITRYDCDVGYALYDITSS 266
RNG + G + FG + C+ GY L+ TSS
Sbjct: 136 RNGQIDVPGGILFGATISFSCNTGYKLFGSTSS 168
>pdb|1H2P|P Chain P, Human Cd55 Domains 3 & 4
Length = 125
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 234 RNGVFFISGDVHFGEITRYDCDVGYALYDITSS 266
RNG + G + FG + C+ GY L+ TSS
Sbjct: 10 RNGQIDVPGGILFGATISFSCNTGYKLFGSTSS 42
>pdb|1UPN|E Chain E, Complex Of Echovirus Type 12 With Domains 3 And 4 Of Its
Receptor Decay Accelerating Factor (Cd55) By Cryo
Electron Microscopy At 16 A
Length = 129
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 234 RNGVFFISGDVHFGEITRYDCDVGYALYDITSS 266
RNG + G + FG + C+ GY L+ TSS
Sbjct: 14 RNGQIDVPGGILFGATISFSCNTGYKLFGSTSS 46
>pdb|1H03|P Chain P, Human Cd55 Domains 3 & 4
pdb|1H03|Q Chain Q, Human Cd55 Domains 3 & 4
pdb|1H2Q|P Chain P, Human Cd55 Domains 3 & 4
pdb|1UOT|P Chain P, Human Cd55 Domains 3 & 4
Length = 125
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 234 RNGVFFISGDVHFGEITRYDCDVGYALYDITSS 266
RNG + G + FG + C+ GY L+ TSS
Sbjct: 10 RNGQIDVPGGILFGATISFSCNTGYKLFGSTSS 42
>pdb|2XRB|A Chain A, Structure Of The N-Terminal Four Domains Of The Complement
Regulator Rat Crry
pdb|2XRD|A Chain A, Structure Of The N-Terminal Four Domains Of The Complement
Regulator Rat Crry
Length = 290
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 234 RNGVFFISGDVHFGEITRYDCDVGYALYDITSS 266
+NG+ ++ D+ FG Y C+ GY L +S+
Sbjct: 106 QNGIVHVNTDIRFGSSITYTCNEGYRLIGSSSA 138
>pdb|1NTJ|A Chain A, Model Of Rat Crry Determined By Solution Scattering, Curve
Fitting And Homology Modelling
Length = 320
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 234 RNGVFFISGDVHFGEITRYDCDVGYALYDITSS 266
+NG+ ++ D+ FG Y C+ GY L +S+
Sbjct: 73 QNGIVHVNTDIRFGSSITYTCNEGYRLIGSSSA 105
>pdb|4GX5|A Chain A, Gsuk Channel
pdb|4GX5|B Chain B, Gsuk Channel
pdb|4GX5|C Chain C, Gsuk Channel
pdb|4GX5|D Chain D, Gsuk Channel
Length = 565
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 246 FGEITRYDCDVGYALYDITSSGLTQAVEKAVPAPFHFVVRFLAWWTPSTMR 296
FG+IT ++ D GY I + ++ + + PF FV FLA W +R
Sbjct: 68 FGDIT-FESDAGYLFASIVT--VSGVIFLLIILPFGFVSMFLAPWIERRLR 115
>pdb|4GX0|A Chain A, Crystal Structure Of The Gsuk L97d Mutant
pdb|4GX0|B Chain B, Crystal Structure Of The Gsuk L97d Mutant
pdb|4GX0|C Chain C, Crystal Structure Of The Gsuk L97d Mutant
pdb|4GX0|D Chain D, Crystal Structure Of The Gsuk L97d Mutant
pdb|4GX1|A Chain A, Crystal Structure Of The Gsuk Bound To Adp
pdb|4GX1|B Chain B, Crystal Structure Of The Gsuk Bound To Adp
pdb|4GX1|C Chain C, Crystal Structure Of The Gsuk Bound To Adp
pdb|4GX1|D Chain D, Crystal Structure Of The Gsuk Bound To Adp
pdb|4GX2|A Chain A, Gsuk Channel Bound To Nad
pdb|4GX2|B Chain B, Gsuk Channel Bound To Nad
pdb|4GX2|C Chain C, Gsuk Channel Bound To Nad
pdb|4GX2|D Chain D, Gsuk Channel Bound To Nad
Length = 565
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 246 FGEITRYDCDVGYALYDITSSGLTQAVEKAVPAPFHFVVRFLAWWTPSTMR 296
FG+IT ++ D GY I + ++ + + PF FV FLA W +R
Sbjct: 68 FGDIT-FESDAGYLFASIVT--VSGVIFLDIILPFGFVSMFLAPWIERRLR 115
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.139 0.461
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,776,134
Number of Sequences: 62578
Number of extensions: 395741
Number of successful extensions: 647
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 634
Number of HSP's gapped (non-prelim): 15
length of query: 317
length of database: 14,973,337
effective HSP length: 99
effective length of query: 218
effective length of database: 8,778,115
effective search space: 1913629070
effective search space used: 1913629070
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.3 bits)