BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 021086
         (317 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P42251|PPBD_BACSU Alkaline phosphatase D OS=Bacillus subtilis (strain 168) GN=phoD
           PE=1 SV=3
          Length = 583

 Score = 55.5 bits (132), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 57/125 (45%), Gaps = 18/125 (14%)

Query: 136 IYTSYTFGPVGRQIKIILLDTRYHRD-PLSSDG-------------TILGSTQWTWLEKE 181
           +Y  +T+G +       +LDTR +RD   ++DG             T+LG  Q  WL   
Sbjct: 317 LYRHFTYGNLA---SFNVLDTRQYRDDQANNDGNKPPSDESRNPNRTLLGKEQEQWLFNN 373

Query: 182 LNGPSSAITIIVSSIQVIS-NLSATTGPLFYMESWGRFPKERDRLFQLIADSKRNGVFFI 240
           L   ++   ++   I     N   +  P++ M+SW  +P +R+R+   I     N V  +
Sbjct: 374 LGSSTAHWNVLAQQIFFAKWNFGTSASPIYSMDSWDGYPAQRERVINFIKSKNLNNVVVL 433

Query: 241 SGDVH 245
           +GDVH
Sbjct: 434 TGDVH 438


>sp|Q8KRU5|PLD_STRCW Phospholipase D OS=Streptomyces chromofuscus GN=pld PE=1 SV=2
          Length = 556

 Score = 32.7 bits (73), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 66/166 (39%), Gaps = 30/166 (18%)

Query: 138 TSYTFGPVGRQIKIILLDTRYHR---------DPLSSDGTILGSTQWTWLEKELNGPSSA 188
           T+Y     G+   + LLD R  R         D    D T+ G  Q  WL+  L    + 
Sbjct: 304 TTYRRLRFGKLADLSLLDLRSFRAQQVSLGDGDVDDPDRTLTGRAQLDWLKAGLKSSDTT 363

Query: 189 ITIIVSSIQV----ISNLSAT-------------TGPLFYMESWGRFPKERDRLF-QLIA 230
             ++ +S+ +    I +LSA               G     + W  +  +R  L   L +
Sbjct: 364 WRLVGNSVMIAPFAIGSLSAELLKPLAKLLGLPQEGLAVNTDQWDGYTDDRRELLAHLRS 423

Query: 231 DSKRNGVFFISGDVHFGEITRYDCDVGYALYDITSSGLTQAVEKAV 276
           ++ RN VF ++GD+H       D  V    Y +++S  T+ V  +V
Sbjct: 424 NAIRNTVF-LTGDIHMAWAN--DVPVNAGTYPLSASAATEFVVTSV 466


>sp|Q01016|CCPH_SHV21 Complement control protein homolog OS=Saimiriine herpesvirus 2
           (strain 11) GN=4 PE=3 SV=1
          Length = 360

 Score = 32.7 bits (73), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 13/50 (26%), Positives = 26/50 (52%)

Query: 219 PKERDRLFQLIADSKRNGVFFISGDVHFGEITRYDCDVGYALYDITSSGL 268
           PK+  +          NG + ++G++++G +  Y C+ GY+L   T+S  
Sbjct: 76  PKKCQKKKCSTPQDLLNGRYTVTGNLYYGSVITYTCNSGYSLIGSTTSAC 125


>sp|P96513|AMYB_BACFI Beta-amylase (Fragment) OS=Bacillus firmus PE=3 SV=1
          Length = 468

 Score = 32.0 bits (71), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 9/87 (10%)

Query: 193 VSSIQVISNLSATT-GPLFYMESWGRFPKERDRLFQLIADSKRNGVFFISGDVHFGEI-T 250
            +S  V  ++ A+  GPL  +  WG F K+   L       K NGV+ I+ DV +G + +
Sbjct: 32  TASAAVADDIQASVMGPLAKINDWGSFKKQLQTL-------KNNGVYAITTDVWWGYVES 84

Query: 251 RYDCDVGYALYDITSSGLTQAVEKAVP 277
             D    ++ Y   +  + +A  K VP
Sbjct: 85  AGDNQFDWSYYKTYADAVKEAGLKWVP 111


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.324    0.138    0.451 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 123,185,306
Number of Sequences: 539616
Number of extensions: 5114212
Number of successful extensions: 9352
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 9348
Number of HSP's gapped (non-prelim): 6
length of query: 317
length of database: 191,569,459
effective HSP length: 117
effective length of query: 200
effective length of database: 128,434,387
effective search space: 25686877400
effective search space used: 25686877400
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 61 (28.1 bits)