Query 021086
Match_columns 317
No_of_seqs 176 out of 1234
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 07:29:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021086.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021086hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3540 PhoD Phosphodiesterase 100.0 2.7E-50 5.8E-55 384.6 16.1 267 26-313 126-478 (522)
2 PF09423 PhoD: PhoD-like phosp 100.0 2.5E-49 5.4E-54 391.5 18.8 277 23-314 88-442 (453)
3 cd07389 MPP_PhoD Bacillus subt 100.0 8.8E-32 1.9E-36 242.6 16.8 168 42-268 1-228 (228)
4 cd07378 MPP_ACP5 Homo sapiens 99.7 1.7E-16 3.7E-21 146.9 17.1 183 64-270 31-233 (277)
5 cd00839 MPP_PAPs purple acid p 99.7 2.3E-16 5.1E-21 147.1 14.9 195 39-251 3-209 (294)
6 PLN02533 probable purple acid 99.7 6.4E-16 1.4E-20 152.0 16.3 196 26-251 127-338 (427)
7 KOG2679 Purple (tartrate-resis 99.5 1.6E-13 3.6E-18 124.2 13.5 205 33-274 36-279 (336)
8 PTZ00422 glideosome-associated 99.5 9.5E-13 2.1E-17 127.1 19.5 212 38-271 24-279 (394)
9 cd07395 MPP_CSTP1 Homo sapiens 99.4 6.4E-12 1.4E-16 115.7 15.6 117 136-270 117-236 (262)
10 cd07396 MPP_Nbla03831 Homo sap 99.3 5.7E-12 1.2E-16 116.7 10.3 190 58-278 33-253 (267)
11 KOG1378 Purple acid phosphatas 99.3 8.2E-12 1.8E-16 121.3 10.5 200 25-251 133-348 (452)
12 cd07402 MPP_GpdQ Enterobacter 99.3 3E-11 6.5E-16 109.2 12.5 187 57-277 30-219 (240)
13 TIGR03767 P_acnes_RR metalloph 99.2 2.3E-10 5E-15 112.6 12.8 122 134-270 290-419 (496)
14 cd00842 MPP_ASMase acid sphing 99.1 2.1E-10 4.6E-15 107.4 10.5 106 134-254 158-268 (296)
15 PRK11148 cyclic 3',5'-adenosin 99.1 1.6E-09 3.5E-14 100.6 12.2 188 33-251 7-211 (275)
16 cd07401 MPP_TMEM62_N Homo sapi 98.9 1E-08 2.2E-13 94.5 12.1 88 149-251 124-214 (256)
17 TIGR03768 RPA4764 metallophosp 98.9 7.4E-09 1.6E-13 101.2 10.7 125 135-269 292-437 (492)
18 cd08163 MPP_Cdc1 Saccharomyces 98.8 3.6E-08 7.8E-13 91.0 12.1 121 137-269 118-253 (257)
19 cd07399 MPP_YvnB Bacillus subt 98.7 7.1E-07 1.5E-11 80.0 16.1 89 171-266 90-182 (214)
20 cd07392 MPP_PAE1087 Pyrobaculu 97.9 4.7E-05 1E-09 65.6 7.5 91 140-248 83-174 (188)
21 cd07393 MPP_DR1119 Deinococcus 97.7 0.00014 3E-09 66.0 8.1 61 172-251 145-209 (232)
22 cd07383 MPP_Dcr2 Saccharomyces 97.7 0.00023 5E-09 62.7 9.2 81 167-250 89-179 (199)
23 COG1409 Icc Predicted phosphoh 96.9 0.01 2.2E-07 54.4 11.0 84 149-247 105-193 (301)
24 KOG1432 Predicted DNA repair e 96.6 0.024 5.2E-07 53.9 11.3 99 148-250 202-314 (379)
25 TIGR03729 acc_ester putative p 96.4 0.0047 1E-07 56.1 4.8 76 169-249 146-223 (239)
26 cd07400 MPP_YydB Bacillus subt 96.3 0.052 1.1E-06 44.8 10.3 50 191-252 81-130 (144)
27 PF00149 Metallophos: Calcineu 96.3 0.0043 9.3E-08 50.4 3.6 66 172-246 134-199 (200)
28 cd07385 MPP_YkuE_C Bacillus su 96.1 0.047 1E-06 48.4 9.5 42 40-81 1-48 (223)
29 cd00840 MPP_Mre11_N Mre11 nucl 95.3 0.02 4.2E-07 50.6 4.0 80 147-250 124-204 (223)
30 cd07388 MPP_Tt1561 Thermus the 94.7 0.71 1.5E-05 41.8 12.4 76 149-246 107-190 (224)
31 KOG3770 Acid sphingomyelinase 93.9 0.68 1.5E-05 47.2 11.4 99 134-250 305-407 (577)
32 cd00838 MPP_superfamily metall 91.7 3.5 7.6E-05 31.9 10.8 50 191-251 70-119 (131)
33 cd08166 MPP_Cdc1_like_1 unchar 91.4 5.7 0.00012 35.2 12.7 43 191-254 112-154 (195)
34 cd07404 MPP_MS158 Microscilla 91.3 0.38 8.2E-06 40.7 5.1 70 170-251 83-153 (166)
35 cd07406 MPP_CG11883_N Drosophi 88.4 7.5 0.00016 35.6 11.5 87 135-249 118-209 (257)
36 PF00149 Metallophos: Calcineu 87.1 0.88 1.9E-05 36.5 4.1 41 41-81 1-47 (200)
37 COG0622 Predicted phosphoester 78.8 3.1 6.7E-05 36.1 4.3 39 41-79 2-42 (172)
38 PRK09453 phosphodiesterase; Pr 76.5 3.2 7E-05 35.7 3.8 37 41-77 1-39 (182)
39 PRK11340 phosphodiesterase Yae 73.7 12 0.00026 34.5 7.1 39 39-77 48-92 (271)
40 PF12850 Metallophos_2: Calcin 72.9 3.3 7.2E-05 33.9 2.8 27 223-251 99-125 (156)
41 TIGR00040 yfcE phosphoesterase 69.8 7.6 0.00016 32.5 4.4 36 41-76 1-39 (158)
42 cd00841 MPP_YfcE Escherichia c 62.0 13 0.00029 30.6 4.4 35 42-78 1-37 (155)
43 cd07394 MPP_Vps29 Homo sapiens 59.9 13 0.00027 32.2 4.0 36 42-77 1-41 (178)
44 cd07379 MPP_239FB Homo sapiens 58.4 19 0.00042 29.1 4.7 53 187-250 67-119 (135)
45 cd08165 MPP_MPPE1 human MPPE1 58.1 13 0.00028 31.3 3.7 35 229-269 118-152 (156)
46 cd08164 MPP_Ted1 Saccharomyces 57.2 19 0.00041 31.9 4.7 21 56-76 34-55 (193)
47 cd07403 MPP_TTHA0053 Thermus t 56.9 13 0.00029 30.1 3.5 51 189-251 57-107 (129)
48 cd07407 MPP_YHR202W_N Saccharo 51.6 43 0.00094 31.3 6.4 91 137-249 138-233 (282)
49 cd08164 MPP_Ted1 Saccharomyces 51.1 13 0.00028 32.9 2.6 16 238-253 147-162 (193)
50 cd07381 MPP_CapA CapA and rela 45.6 2.2E+02 0.0048 25.3 11.1 95 137-252 123-224 (239)
51 cd07397 MPP_DevT Myxococcus xa 45.6 32 0.00069 31.5 4.3 37 41-77 1-37 (238)
52 cd07384 MPP_Cdc1_like Saccharo 45.3 26 0.00056 30.1 3.5 40 228-270 129-168 (171)
53 cd07410 MPP_CpdB_N Escherichia 42.8 47 0.001 30.5 5.1 98 136-249 129-232 (277)
54 PF13956 Ibs_toxin: Toxin Ibs, 42.1 17 0.00036 19.6 1.1 13 12-24 5-17 (19)
55 smart00854 PGA_cap Bacterial c 40.0 1.7E+02 0.0036 26.2 8.2 57 176-251 164-221 (239)
56 TIGR00583 mre11 DNA repair pro 39.4 43 0.00093 33.1 4.5 41 39-79 2-56 (405)
57 PF12850 Metallophos_2: Calcin 38.2 67 0.0014 25.9 4.9 34 41-76 1-36 (156)
58 cd07384 MPP_Cdc1_like Saccharo 37.8 30 0.00065 29.7 2.8 18 61-78 41-58 (171)
59 PF09587 PGA_cap: Bacterial ca 37.1 1.8E+02 0.004 26.2 8.0 60 176-252 171-233 (250)
60 TIGR03729 acc_ester putative p 35.7 57 0.0012 29.2 4.4 35 42-76 1-43 (239)
61 TIGR03006 pepcterm_polyde poly 34.0 41 0.00088 31.2 3.2 62 211-273 15-80 (265)
62 cd08165 MPP_MPPE1 human MPPE1 32.0 34 0.00075 28.8 2.2 18 61-78 34-51 (156)
63 PF12273 RCR: Chitin synthesis 30.4 16 0.00035 29.9 -0.1 17 6-22 1-17 (130)
64 COG2129 Predicted phosphoester 29.8 2.2E+02 0.0047 25.9 6.9 67 171-248 120-188 (226)
65 KOG3325 Membrane coat complex 28.6 80 0.0017 27.0 3.7 26 226-253 99-125 (183)
66 PRK09968 serine/threonine-spec 28.5 50 0.0011 29.4 2.7 35 42-78 16-55 (218)
67 cd07398 MPP_YbbF-LpxH Escheric 27.8 83 0.0018 27.2 4.0 30 222-253 178-207 (217)
68 COG1408 Predicted phosphohydro 27.6 1.1E+02 0.0024 28.7 4.9 40 39-78 43-86 (284)
69 cd07391 MPP_PF1019 Pyrococcus 27.4 63 0.0014 27.4 3.1 19 61-79 37-55 (172)
70 TIGR03283 thy_syn_methano thym 25.9 2E+02 0.0042 25.5 6.0 79 171-249 91-194 (199)
71 COG1209 RfbA dTDP-glucose pyro 25.5 40 0.00086 31.6 1.5 17 64-80 98-114 (286)
72 COG4367 Uncharacterized protei 25.2 96 0.0021 24.0 3.2 37 212-252 51-89 (97)
73 cd07405 MPP_UshA_N Escherichia 25.1 1.2E+02 0.0026 28.1 4.7 58 176-248 164-222 (285)
74 PF08173 YbgT_YccB: Membrane b 25.0 57 0.0012 19.6 1.6 17 9-25 2-18 (28)
75 PRK11340 phosphodiesterase Yae 24.5 45 0.00099 30.7 1.7 19 230-250 199-217 (271)
76 COG2949 SanA Uncharacterized m 23.9 2.5E+02 0.0054 25.4 6.1 73 5-77 15-105 (235)
77 PF04790 Sarcoglycan_1: Sarcog 23.5 50 0.0011 30.7 1.8 23 3-25 5-27 (264)
78 TIGR01854 lipid_A_lpxH UDP-2,3 22.3 1E+02 0.0022 27.4 3.6 28 224-253 176-203 (231)
79 PF14582 Metallophos_3: Metall 22.0 84 0.0018 28.8 2.8 60 176-250 162-221 (255)
80 cd00844 MPP_Dbr1_N Dbr1 RNA la 21.9 98 0.0021 28.6 3.4 28 224-253 207-234 (262)
81 cd07409 MPP_CD73_N CD73 ecto-5 21.4 2E+02 0.0043 26.5 5.4 86 136-248 131-219 (281)
No 1
>COG3540 PhoD Phosphodiesterase/alkaline phosphatase D [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.7e-50 Score=384.56 Aligned_cols=267 Identities=22% Similarity=0.365 Sum_probs=219.9
Q ss_pred ccccCCCCCCCCC--ccceEEEEeeCCCC-CChhHHHHHHhcCCCEEEEeccccccCCCCCCcccCcccccCCCC-----
Q 021086 26 GGGNDSTKANHEA--LVSRIAFGSCANQT-APQPIWDAIIKFDPQVFIWMGDNIYGDIKRPSKMFGKERTIGPWK----- 97 (317)
Q Consensus 26 ~~~~~~t~p~~~~--~~~riAf~SC~~~~-~~~~~~~~ia~~~pD~~l~lGD~iY~d~~~~~~~~~~~r~~~~w~----- 97 (317)
-.|+|||+|+... +.+++|+.||++|+ +++++|++|++++||||||+||+||||+..+...- ...|+
T Consensus 126 pvGrtrTapa~~~~i~~~~fa~ascQ~~~~gy~~aY~~ma~~~~D~viH~GDyIYeyg~~~~~~~-----~~~~~~~~~~ 200 (522)
T COG3540 126 PVGRTRTAPAPGRAIRFVWFADASCQGWEIGYMTAYKTMAKEEPDFVIHLGDYIYEYGPIPDEVS-----LNSWKNVVVT 200 (522)
T ss_pred cccccccCCCCCCcchhhhhhhccccccccchhHHHHHHHhcCCCEEEEcCCeeeccCCcccccc-----cccccccccC
Confidence 4689999999964 67999999999996 88999999999999999999999999998753210 11233
Q ss_pred CCCCCCCCCHHHHHHHHHhhhcChhHHHHHhhh------------c----------------------------------
Q 021086 98 NVPRFVPTSQDEMNFKYHIIKNHPAYSRLRHNL------------N---------------------------------- 131 (317)
Q Consensus 98 ~~p~~~~~~~~~yr~~Y~~~~~dp~l~~~~~~~------------N---------------------------------- 131 (317)
+++.++..+++|||.+|+.|++|++||++|+.+ |
T Consensus 201 ~~~~~ei~TLddYR~rya~y~~D~nLqaahA~~Pwi~~WDDHEv~NN~~~~~~~nD~~~~~k~~~~r~a~A~qAyyE~mP 280 (522)
T COG3540 201 QHKSKEIETLDDYRGRYAYYKTDENLQAAHAAFPWIVQWDDHEVANNWSNSIDENDSRYDEKDFVLRAAAARQAYYEHMP 280 (522)
T ss_pred CCCCcceeeHHHHhhHHhhhcccHHHHHhhccCCEEEEeccccccccccccccccCCCCChHHHHHHHHHHHHHHHHhCc
Confidence 356678899999999999999999999999877 2
Q ss_pred -----C--CCCcEEEEEeCCCCceeEEEEecCCCCCC------CC--------CCCCCCCcHHHHHHHHHHhcCCCCCeE
Q 021086 132 -----T--KAGIYTSYTFGPVGRQIKIILLDTRYHRD------PL--------SSDGTILGSTQWTWLEKELNGPSSAIT 190 (317)
Q Consensus 132 -----~--~~~iY~s~~~G~~g~~v~~~~LDtR~~R~------~~--------~~~~~~LG~~Q~~WL~~~L~~s~a~~k 190 (317)
. ...+||+|.||++ +.|+|||+|+||+ +. .+..+|||++|.+||+++|..|+++||
T Consensus 281 iR~~~~p~~~~lYR~~tyG~L---a~~~~LDtR~YR~dqp~~dg~~~~~q~~~~~~~~mlG~~QeqWLk~~L~~SkatWn 357 (522)
T COG3540 281 IRYSSLPTDGRLYRSFTYGPL---ADLFVLDTRSYRTDQPCGDGNPPNCQAVAGSAATMLGEQQEQWLKRGLGASKATWN 357 (522)
T ss_pred cccccCCccceeeeeeccccc---cceeeeehhhhccccccCCCCcchhhhhhCccccchhhHHHHHHHhhhhhcchhhh
Confidence 1 1479999999998 9999999999993 32 245899999999999999999999999
Q ss_pred EEEecceeecC----CCCCCCCCccCCccCCCHHHHHHHHHHHHhhCCCCEEEEecCccCccceeeccC-----CCcceE
Q 021086 191 IIVSSIQVISN----LSATTGPLFYMESWGRFPKERDRLFQLIADSKRNGVFFISGDVHFGEITRYDCD-----VGYALY 261 (317)
Q Consensus 191 vv~s~vp~~~~----~~~~~~~~~~~d~W~~~~~er~~Ll~~l~~~~v~~vv~LSGDvH~~~~~~~~~~-----~~~~~~ 261 (317)
||++++||..- .++.++...+.|+|+||+.+|++||++|++.+++|+|+|+||||.+++..+..+ ...+++
T Consensus 358 Via~q~~~~~~~~d~~~a~~~~~a~~D~wdGy~~~RerLl~fi~~~~~~N~V~LtgDvH~~wA~~l~~d~a~~~~~~~f~ 437 (522)
T COG3540 358 VIAQQMPLGLVVFDGSPATEGQEANADGWDGYPAGRERLLRFIADRKIRNTVVLTGDVHYSWAHDLDPDFAQFEDFAPFW 437 (522)
T ss_pred hhhhhcceeEeecCCCccccCccccccCcCCCcccHHHHHHHHHhcCCCCcEEEechhHHHHHhhcCcchhcccccCcee
Confidence 99999998431 122345667899999999999999999999999999999999999999988753 445799
Q ss_pred EEcCCCcccccccccCCCchhhHHHhhhccc-CceeecCCceeeeccC-CCccc
Q 021086 262 DITSSGLTQAVEKAVPAPFHFVVRFLAWWTP-STMRVIGKNCRHRSCT-YGMRV 313 (317)
Q Consensus 262 eiTSSgl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~g~~~ 313 (317)
|++|.+++....- |. ..+ ..+-++|||+||.+.. -||+.
T Consensus 438 Efv~tsi~sG~~g--p~-----------~~~~~~~l~~np~vkF~~a~~~g~~~ 478 (522)
T COG3540 438 EFVSTSINSGGFG--PN-----------DLPDMAILTFNPEVKFNNAPGRGYVL 478 (522)
T ss_pred eEeeccCcCCCcC--CC-----------cCchhhhhccCceEEeeccccccccc
Confidence 9999988875421 11 111 3456789999998776 88864
No 2
>PF09423 PhoD: PhoD-like phosphatase; InterPro: IPR018946 This entry contains a number of putative proteins as well as Alkaline phosphatase D which catalyses the reaction: A phosphate monoester + H(2)O = an alcohol + phosphate ; PDB: 2YEQ_B.
Probab=100.00 E-value=2.5e-49 Score=391.52 Aligned_cols=277 Identities=28% Similarity=0.442 Sum_probs=166.4
Q ss_pred hhcccccCCCCCCCCCccceEEEEeeCCC-CCChhHHHHHHh-cCCCEEEEeccccccCCCCCCcccCcccccCCCCCCC
Q 021086 23 FACGGGNDSTKANHEALVSRIAFGSCANQ-TAPQPIWDAIIK-FDPQVFIWMGDNIYGDIKRPSKMFGKERTIGPWKNVP 100 (317)
Q Consensus 23 ~~~~~~~~~t~p~~~~~~~riAf~SC~~~-~~~~~~~~~ia~-~~pD~~l~lGD~iY~d~~~~~~~~~~~r~~~~w~~~p 100 (317)
..+..|++||+|..+...+||||+||+++ .+++++|++|++ ++||||||+||+||+|.......... +.+... ..|
T Consensus 88 ~~s~~g~~rT~p~~~~~~~r~a~~SC~~~~~~~~~~~~~~a~~~~~D~~l~lGD~IY~d~~~~~~~~~~-~~~~r~-~~p 165 (453)
T PF09423_consen 88 QTSPVGRFRTAPDGDPDPFRFAFGSCQNYEDGYFPAYRRIAERDDPDFVLHLGDQIYEDGGGGYGNLSR-RPIGRA-PEP 165 (453)
T ss_dssp EE---EEEE--TT-----EEEEEE----CCC---HHHHHHTT-S--SEEEE-S-SS----TTSS--TT----S------S
T ss_pred CCCCceEEEcCCCCCCCceEEEEECCCCcccChHHHHHhhhccCCCcEEEEeCCeeeccCCcccccccc-cccccc-ccc
Confidence 34567889999888888899999999998 478999999999 69999999999999997522110000 000000 245
Q ss_pred CCCCCCHHHHHHHHHhhhcChhHHHHHhhh-------------c---------------------------------C--
Q 021086 101 RFVPTSQDEMNFKYHIIKNHPAYSRLRHNL-------------N---------------------------------T-- 132 (317)
Q Consensus 101 ~~~~~~~~~yr~~Y~~~~~dp~l~~~~~~~-------------N---------------------------------~-- 132 (317)
..+..++++||.+|++++++|++|++++++ | .
T Consensus 166 ~~~~~~l~~yR~~y~~~~~~p~l~~~~~~~P~~~iwDDHdi~nn~~~~~~~~~~~~~~~~~~~~~~a~~ay~e~~p~r~~ 245 (453)
T PF09423_consen 166 AHEAETLDDYRRRYRQYRSDPDLRRLHANVPWIMIWDDHDIGNNWWGDGAENHQDTSGDFQDRRRAAYQAYFEYQPVRNP 245 (453)
T ss_dssp SSS--SHHHHHHHHHHHHT-HHHHHHHHHSEEEE---STTTSTT-BTTB-STT---HHHHHHHHHHHHHHHHHHS---GG
T ss_pred ccccccHHHHHHHHHHHcCCHHHHHHhhcccEEEEccCceecccccCCccccccccccchHHHHHHHHHHHHhhcCccCC
Confidence 567789999999999999999999999877 1 1
Q ss_pred -----CCCcEEEEEeCCCCceeEEEEecCCCCCCCC-------------CCCCCCCcHHHHHHHHHHhcCCCCCeEEEEe
Q 021086 133 -----KAGIYTSYTFGPVGRQIKIILLDTRYHRDPL-------------SSDGTILGSTQWTWLEKELNGPSSAITIIVS 194 (317)
Q Consensus 133 -----~~~iY~s~~~G~~g~~v~~~~LDtR~~R~~~-------------~~~~~~LG~~Q~~WL~~~L~~s~a~~kvv~s 194 (317)
..++|++|++|++ ++|||||+|+||++. .+.++|||++|++||+++|.+|.++||||+|
T Consensus 246 ~~~~~~~~~y~~~~~G~~---~~~~~LD~R~~R~~~~~~~~~~~~~~~~~~~~~mLG~~Q~~wL~~~L~~s~a~~kvi~s 322 (453)
T PF09423_consen 246 DPPGDQGRIYRSFRYGDL---VEFFMLDTRSYRSPPPCDGPGDTCPAADDPSRTMLGEEQWDWLEDWLASSQATWKVIGS 322 (453)
T ss_dssp G-BTTB----EEEEETTT---EEEEE--SSSS----CCCSSEE--HHHH-TT--SS-HHHHHHHHHHHHH--SSEEEEE-
T ss_pred CccCCCCceEEEEecCCc---eeEEEEechhccccccccccccccccccCCccCcCCHHHHHHHHHHHhcCCCcEEEEEe
Confidence 2468999999986 999999999999853 3678999999999999999999999999999
Q ss_pred cceeecCCCCC--CCCCccCCccCCCHHHHHHHHHHHHhhCCCCEEEEecCccCccceeeccCC-------CcceEEEcC
Q 021086 195 SIQVISNLSAT--TGPLFYMESWGRFPKERDRLFQLIADSKRNGVFFISGDVHFGEITRYDCDV-------GYALYDITS 265 (317)
Q Consensus 195 ~vp~~~~~~~~--~~~~~~~d~W~~~~~er~~Ll~~l~~~~v~~vv~LSGDvH~~~~~~~~~~~-------~~~~~eiTS 265 (317)
++||.+..... .....+.|+|++|+.||++|+++|++.+++|||+||||+|++++.++.... +..++||||
T Consensus 323 ~v~~~~~~~~~~~~~~~~~~d~W~g~~~er~~Ll~~l~~~~~~~vV~LSGDvH~~~~~~~~~~~~~~~~~~~~~~~Ef~~ 402 (453)
T PF09423_consen 323 SVPFSPLNFPDAAEGLPFNMDSWDGYPAERQRLLDFLRESGIRNVVFLSGDVHASAASRIPPDDADPPDGPGSVGVEFTS 402 (453)
T ss_dssp SS--S---SS-SS-S--EETTSGGGSHHHHHHHHHHHHHTT---EEEEE-SSSSEEEEEEESSTT---TTS-EEEEEEE-
T ss_pred CCceecccccccccccccCCCchhhCHHHHHHHHHHHHhhCCCCEEEEecCcchheeeecccccccccCCCCCeEEEEEC
Confidence 99986543110 122347899999999999999999999999999999999999999988643 468999999
Q ss_pred CCcccccccccCCCchhhHHHhhhcccCceeecCCceeeec-cCCCcccc
Q 021086 266 SGLTQAVEKAVPAPFHFVVRFLAWWTPSTMRVIGKNCRHRS-CTYGMRVI 314 (317)
Q Consensus 266 Sgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~ 314 (317)
|++++... ..+. ....+..+...|||++|.+ .++||..|
T Consensus 403 s~vts~~~-~~~~---------~~~~~~~~~~~np~~~~~~~~~~G~~~i 442 (453)
T PF09423_consen 403 SSVTSPGF-GLGT---------SPALDRALDKANPHLKFADLRNFGYVEI 442 (453)
T ss_dssp --SSTT-S--BSB----------TTHHH-HHHH-TTEEEEE-B-EEEEEE
T ss_pred CCccCCCc-cccc---------chhhhhhhhhcCCceEEeECCCCcEEEE
Confidence 99998776 2111 1112233444599999965 89999876
No 3
>cd07389 MPP_PhoD Bacillus subtilis PhoD and related proteins, metallophosphatase domain. PhoD (also known as alkaline phosphatase D/APaseD in Bacillus subtilis) is a secreted phosphodiesterase encoded by phoD of the Pho regulon in Bacillus subtilis. PhoD homologs are found in prokaryotes, eukaryotes, and archaea. PhoD contains a twin arginine (RR) motif and is transported by the Tat (Twin-arginine translocation) translocation pathway machinery (TatAyCy). This family also includes the Fusarium oxysporum Fso1 protein. PhoD belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF
Probab=99.98 E-value=8.8e-32 Score=242.65 Aligned_cols=168 Identities=36% Similarity=0.613 Sum_probs=141.2
Q ss_pred eEEEEeeCCCC-CChhHHHHHH----hcCCCEEEEeccccccCCCCCCcccCcccccCCCCCCCCCCCCCHHHHHHHHHh
Q 021086 42 RIAFGSCANQT-APQPIWDAII----KFDPQVFIWMGDNIYGDIKRPSKMFGKERTIGPWKNVPRFVPTSQDEMNFKYHI 116 (317)
Q Consensus 42 riAf~SC~~~~-~~~~~~~~ia----~~~pD~~l~lGD~iY~d~~~~~~~~~~~r~~~~w~~~p~~~~~~~~~yr~~Y~~ 116 (317)
||||+||++++ +....+..++ +.+||+|||+||+||+|.......... ......+...+.++++||++|+.
T Consensus 1 r~a~~SC~~~~~~~~~~~~~~~~~~~~~~~d~~l~~GD~IY~d~~~~~~~~~~----~~~~~~~~~~~~~~~~~r~~Y~~ 76 (228)
T cd07389 1 RFAFGSCNKYESGYFNAYRALAYDHSEEDPDLFLHLGDQIYADDVGGLMPALI----EGRPLEPAHEALTLEEYRERYRQ 76 (228)
T ss_pred CEEEEECCCCCCCCcHHHHHHhhhccccCCCEEEEcCCeecccCCCccccccc----CCcCcCCcccccCHHHHHHHHHH
Confidence 69999999986 5678888887 789999999999999998654211110 00112233467789999999999
Q ss_pred hhcChhHHHHHhhh-------------c---------------------------------------CCCCcEEEEEeCC
Q 021086 117 IKNHPAYSRLRHNL-------------N---------------------------------------TKAGIYTSYTFGP 144 (317)
Q Consensus 117 ~~~dp~l~~~~~~~-------------N---------------------------------------~~~~iY~s~~~G~ 144 (317)
++++|.++++++++ | ...++|+++++|.
T Consensus 77 ~~~~p~~~~~~~~~p~~~iwDDHDi~~n~~~~~~~~~~~~~~~~~~~~a~~ay~e~~~~~~~~~~~~~~~~~y~~~~~G~ 156 (228)
T cd07389 77 YRSDPDLQRLLAQVPTIGIWDDHDIGDNWGGDGAWVQDSPVFYARKAAARQAYLEFQPVRNPSPRRGGRGGIYRSFRFGD 156 (228)
T ss_pred HcCCHHHHHHhhcCCEEEeccccccccccccccccccCcchHHHHHHHHHHHHHHHcCCCCCCccCCCCceEEEEEecCC
Confidence 99999999999876 1 1246999999998
Q ss_pred CCceeEEEEecCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCeEEEEecceeecCCCCCCCCCccCCccCCCHHHHHH
Q 021086 145 VGRQIKIILLDTRYHRDPLSSDGTILGSTQWTWLEKELNGPSSAITIIVSSIQVISNLSATTGPLFYMESWGRFPKERDR 224 (317)
Q Consensus 145 ~g~~v~~~~LDtR~~R~~~~~~~~~LG~~Q~~WL~~~L~~s~a~~kvv~s~vp~~~~~~~~~~~~~~~d~W~~~~~er~~ 224 (317)
. +.||+||+|++| |+|++|++||++
T Consensus 157 ~---~~~~~lD~R~~R----------------------------------------------------d~W~~~~~er~~ 181 (228)
T cd07389 157 L---VDLILLDTRTYR----------------------------------------------------DSWDGYPAERER 181 (228)
T ss_pred c---ceEEEEeccccc----------------------------------------------------ccccccHHHHHH
Confidence 5 799999999999 789999999999
Q ss_pred HHHHHHhhCCCCEEEEecCccCccceeecc---CCCcceEEEcCCCc
Q 021086 225 LFQLIADSKRNGVFFISGDVHFGEITRYDC---DVGYALYDITSSGL 268 (317)
Q Consensus 225 Ll~~l~~~~v~~vv~LSGDvH~~~~~~~~~---~~~~~~~eiTSSgl 268 (317)
|+++|++.++++||+||||+|++++.++.. ..+..++|||||||
T Consensus 182 l~~~~~~~~~~~vv~lSGDvH~~~~~~~~~~~~~~~~~~~e~~sS~l 228 (228)
T cd07389 182 LLDLLAKRKIKNVVFLSGDVHLAEASDLPLDAPGDGYVLVEFTSSGL 228 (228)
T ss_pred HHHHHHHhCCCCeEEEecHHHHHHHhhcccccCCCCccEEEEecCCC
Confidence 999999999999999999999999999876 67889999999986
No 4
>cd07378 MPP_ACP5 Homo sapiens acid phosphatase 5 and related proteins, metallophosphatase domain. Acid phosphatase 5 (ACP5) removes the mannose 6-phosphate recognition marker from lysosomal proteins. The exact site of dephosphorylation is not clear. Evidence suggests dephosphorylation may take place in a prelysosomal compartment as well as in the lysosome. ACP5 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site ma
Probab=99.72 E-value=1.7e-16 Score=146.91 Aligned_cols=183 Identities=21% Similarity=0.266 Sum_probs=118.0
Q ss_pred cCCCEEEEeccccccCCCCCCc--ccCc--ccccCCC-CCCCCCCCCCHHHHHHHHHhh---hc---ChhHHHHHhhhcC
Q 021086 64 FDPQVFIWMGDNIYGDIKRPSK--MFGK--ERTIGPW-KNVPRFVPTSQDEMNFKYHII---KN---HPAYSRLRHNLNT 132 (317)
Q Consensus 64 ~~pD~~l~lGD~iY~d~~~~~~--~~~~--~r~~~~w-~~~p~~~~~~~~~yr~~Y~~~---~~---dp~l~~~~~~~N~ 132 (317)
.+|||+|++||++|.++..... .... +...... ...|.....+.+|+....... .. .|.+ .
T Consensus 31 ~~~dfvv~~GD~~y~~g~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~GNHD~~~~~~~~~~~~~~~~~~~~--------~ 102 (277)
T cd07378 31 LGPDFILSLGDNFYDDGVGSVDDPRFETTFEDVYSAPSLQVPWYLVLGNHDYSGNVSAQIDYTKRPNSPRW--------T 102 (277)
T ss_pred cCCCEEEeCCCccccCCCCCCcchHHHHHHHHHccchhhcCCeEEecCCcccCCCchheeehhccCCCCCc--------c
Confidence 7999999999999998753210 0000 0011111 133444445555554221111 00 0110 1
Q ss_pred CCCcEEEEEeCC--CCceeEEEEecCCCCCCCCC-------CCCCCCcHHHHHHHHHHhcCCCCCeEEEEecceeecCCC
Q 021086 133 KAGIYTSYTFGP--VGRQIKIILLDTRYHRDPLS-------SDGTILGSTQWTWLEKELNGPSSAITIIVSSIQVISNLS 203 (317)
Q Consensus 133 ~~~iY~s~~~G~--~g~~v~~~~LDtR~~R~~~~-------~~~~~LG~~Q~~WL~~~L~~s~a~~kvv~s~vp~~~~~~ 203 (317)
.+..|++|.++. .+..++||+|||+.++.... .....++++|++||+++|+++.++|+||++|+|+++...
T Consensus 103 ~~~~~y~~~~~~~~~~~~~~~i~LDt~~~~~~~~~~~~~~~~~~~~~~~~Q~~wL~~~L~~~~~~~~iv~~H~P~~~~~~ 182 (277)
T cd07378 103 MPAYYYRVSFPFPSSDTTVEFIMIDTVPLCGNSDDIASPYGPPNGKLAEEQLAWLEKTLAASTADWKIVVGHHPIYSSGE 182 (277)
T ss_pred CcchheEEEeecCCCCCEEEEEEEeChhHcCccccccccccCcchhhHHHHHHHHHHHHHhcCCCeEEEEeCccceeCCC
Confidence 345788898872 12349999999998865321 234578999999999999988889999999999865311
Q ss_pred CCCCCCccCCccCCCHHHHHHHHHHHHhhCCCCEEEEecCccCccceeeccCCCcceEEEcCCCccc
Q 021086 204 ATTGPLFYMESWGRFPKERDRLFQLIADSKRNGVFFISGDVHFGEITRYDCDVGYALYDITSSGLTQ 270 (317)
Q Consensus 204 ~~~~~~~~~d~W~~~~~er~~Ll~~l~~~~v~~vv~LSGDvH~~~~~~~~~~~~~~~~eiTSSgl~~ 270 (317)
... -+..+++|.++|+++++. ++||||+|..+..... ...++.+++++...
T Consensus 183 ----------~~~-~~~~~~~l~~l~~~~~v~--~vl~GH~H~~~~~~~~---~~~~~~i~~G~~~~ 233 (277)
T cd07378 183 ----------HGP-TSCLVDRLLPLLKKYKVD--AYLSGHDHNLQHIKDD---GSGTSFVVSGAGSK 233 (277)
T ss_pred ----------CCC-cHHHHHHHHHHHHHcCCC--EEEeCCcccceeeecC---CCCcEEEEeCCCcc
Confidence 011 156789999999999886 8999999998877543 13567777665444
No 5
>cd00839 MPP_PAPs purple acid phosphatases of the metallophosphatase superfamily, metallophosphatase domain. Purple acid phosphatases (PAPs) belong to a diverse family of binuclear metallohydrolases that have been identified and characterized in plants, animals, and fungi. PAPs contain a binuclear metal center and their characteristic pink or purple color derives from a charge-transfer transition between a tyrosine residue and a chromophoric ferric ion within the binuclear center. PAPs catalyze the hydrolysis of a wide range of activated phosphoric acid mono- and di-esters and anhydrides. PAPs are distinguished from the other phosphatases by their insensitivity to L-(+) tartrate inhibition and are therefore also known as tartrate resistant acid phosphatases (TRAPs). While only a few copies of PAP-like genes are present in mammalian and fungal genomes, multiple copies are present in plant genomes. PAPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diver
Probab=99.70 E-value=2.3e-16 Score=147.12 Aligned_cols=195 Identities=21% Similarity=0.250 Sum_probs=122.4
Q ss_pred ccceEEEEeeCCC--CCChhHHHHHHh--cCCCEEEEeccccccCCCCCCcccC-cccccCCC-CCCCCCCCCCHHHHHH
Q 021086 39 LVSRIAFGSCANQ--TAPQPIWDAIIK--FDPQVFIWMGDNIYGDIKRPSKMFG-KERTIGPW-KNVPRFVPTSQDEMNF 112 (317)
Q Consensus 39 ~~~riAf~SC~~~--~~~~~~~~~ia~--~~pD~~l~lGD~iY~d~~~~~~~~~-~~r~~~~w-~~~p~~~~~~~~~yr~ 112 (317)
.++||++++=... ......++.|++ .+|||+|++||.+|.++........ -.+.+.++ ...|.......+|+..
T Consensus 3 ~~~~f~v~gD~~~~~~~~~~~~~~l~~~~~~~d~vl~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~GNHD~~~ 82 (294)
T cd00839 3 TPFKFAVFGDMGQNTNNSTNTLDHLEKELGNYDAILHVGDLAYADGYNNGSRWDTFMRQIEPLASYVPYMVTPGNHEADY 82 (294)
T ss_pred CcEEEEEEEECCCCCCCcHHHHHHHHhccCCccEEEEcCchhhhcCCccchhHHHHHHHHHHHHhcCCcEEcCccccccc
Confidence 4688888754443 345688999887 7999999999999987653100000 00001111 1244444455565543
Q ss_pred HHHhhhcChhHH-HHHhh--hcCCCCcEEEEEeCCCCceeEEEEecCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCC--
Q 021086 113 KYHIIKNHPAYS-RLRHN--LNTKAGIYTSYTFGPVGRQIKIILLDTRYHRDPLSSDGTILGSTQWTWLEKELNGPSS-- 187 (317)
Q Consensus 113 ~Y~~~~~dp~l~-~~~~~--~N~~~~iY~s~~~G~~g~~v~~~~LDtR~~R~~~~~~~~~LG~~Q~~WL~~~L~~s~a-- 187 (317)
............ ..... .......|++|++|+ ++|++||+..... ...++.+|++||++.|++.++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ysf~~g~----v~fi~Lds~~~~~-----~~~~~~~q~~WL~~~L~~~~~~~ 153 (294)
T cd00839 83 NFSFYKIKAFFPRFRFPHSPSGSTSNLWYSFDVGP----VHFVSLSTEVDFY-----GDGPGSPQYDWLEADLAKVDRSK 153 (294)
T ss_pred CCCCcccccccccccccCCCCCCCCCceEEEeeCC----EEEEEEecccccc-----cCCCCcHHHHHHHHHHHHhcccC
Confidence 322111110000 00000 002346799999997 9999999975432 235689999999999986643
Q ss_pred -CeEEEEecceeecCCCCCCCCCccCCccCCCHHHHHHHHHHHHhhCCCCEEEEecCccCcccee
Q 021086 188 -AITIIVSSIQVISNLSATTGPLFYMESWGRFPKERDRLFQLIADSKRNGVFFISGDVHFGEITR 251 (317)
Q Consensus 188 -~~kvv~s~vp~~~~~~~~~~~~~~~d~W~~~~~er~~Ll~~l~~~~v~~vv~LSGDvH~~~~~~ 251 (317)
+|+||+.|.|++.... ..+.-......+++|.++|++++++ ++|+||+|..+...
T Consensus 154 ~~~~iv~~H~P~~~~~~-------~~~~~~~~~~~~~~l~~ll~~~~v~--~vl~GH~H~y~r~~ 209 (294)
T cd00839 154 TPWIIVMGHRPMYCSNT-------DHDDCIEGEKMRAALEDLFYKYGVD--LVLSGHVHAYERTC 209 (294)
T ss_pred CCeEEEEeccCcEecCc-------cccccchhHHHHHHHHHHHHHhCCC--EEEEccceeeEeec
Confidence 7999999999865321 0111012357789999999999987 89999999998764
No 6
>PLN02533 probable purple acid phosphatase
Probab=99.69 E-value=6.4e-16 Score=152.03 Aligned_cols=196 Identities=19% Similarity=0.266 Sum_probs=124.8
Q ss_pred ccccCCCCCCCCCccceEEEEeeCCCCC-ChhHHHHHHhcCCCEEEEeccccccCCCCCC-cccCcccccCCC-CCCCCC
Q 021086 26 GGGNDSTKANHEALVSRIAFGSCANQTA-PQPIWDAIIKFDPQVFIWMGDNIYGDIKRPS-KMFGKERTIGPW-KNVPRF 102 (317)
Q Consensus 26 ~~~~~~t~p~~~~~~~riAf~SC~~~~~-~~~~~~~ia~~~pD~~l~lGD~iY~d~~~~~-~~~~~~r~~~~w-~~~p~~ 102 (317)
...+.+|+|+. .++||++.++..... .....++|.+.+|||+||+||.+|++..... ..+ .+.+.+. ...|..
T Consensus 127 ~~~~F~T~p~~--~~~~f~v~GDlG~~~~~~~tl~~i~~~~pD~vl~~GDl~y~~~~~~~wd~f--~~~i~~l~s~~P~m 202 (427)
T PLN02533 127 QEFSFRTPPSK--FPIKFAVSGDLGTSEWTKSTLEHVSKWDYDVFILPGDLSYANFYQPLWDTF--GRLVQPLASQRPWM 202 (427)
T ss_pred cceEEECCCCC--CCeEEEEEEeCCCCcccHHHHHHHHhcCCCEEEEcCccccccchHHHHHHH--HHHhhhHhhcCceE
Confidence 34567788864 479999999876532 3457788888999999999999998754210 000 0111111 123433
Q ss_pred CCCCHHHHHH----------HHHhhhcChhHHHHHhhhcCCCCcEEEEEeCCCCceeEEEEecCCCCCCCCCCCCCCCcH
Q 021086 103 VPTSQDEMNF----------KYHIIKNHPAYSRLRHNLNTKAGIYTSYTFGPVGRQIKIILLDTRYHRDPLSSDGTILGS 172 (317)
Q Consensus 103 ~~~~~~~yr~----------~Y~~~~~dp~l~~~~~~~N~~~~iY~s~~~G~~g~~v~~~~LDtR~~R~~~~~~~~~LG~ 172 (317)
.+...||++. .|...+.-|.-.. ......|++|++|. ++|++||+-..- -.+.
T Consensus 203 ~~~GNHE~~~~~~~~~~~f~~y~~rf~mP~~~~-----g~~~~~yYSfd~g~----vhfI~Lds~~~~--------~~~~ 265 (427)
T PLN02533 203 VTHGNHELEKIPILHPEKFTAYNARWRMPFEES-----GSTSNLYYSFNVYG----VHIIMLGSYTDF--------EPGS 265 (427)
T ss_pred EeCccccccccccccCcCccchhhcccCCcccc-----CCCCCceEEEEECC----EEEEEEeCCccc--------cCch
Confidence 3444555431 1222222222100 01245799999997 999999994311 1368
Q ss_pred HHHHHHHHHhcCC---CCCeEEEEecceeecCCCCCCCCCccCCccCCCHHHHHHHHHHHHhhCCCCEEEEecCccCccc
Q 021086 173 TQWTWLEKELNGP---SSAITIIVSSIQVISNLSATTGPLFYMESWGRFPKERDRLFQLIADSKRNGVFFISGDVHFGEI 249 (317)
Q Consensus 173 ~Q~~WL~~~L~~s---~a~~kvv~s~vp~~~~~~~~~~~~~~~d~W~~~~~er~~Ll~~l~~~~v~~vv~LSGDvH~~~~ 249 (317)
+|++||++.|++. ..+|+|+..|.|++.... ....+.. ...-|+.|.++|.+++|+ ++||||+|..+.
T Consensus 266 ~Q~~WLe~dL~~~~r~~~pwiIv~~H~P~y~s~~-----~~~~~~~--~~~~r~~le~Ll~~~~Vd--lvlsGH~H~YeR 336 (427)
T PLN02533 266 EQYQWLENNLKKIDRKTTPWVVAVVHAPWYNSNE-----AHQGEKE--SVGMKESMETLLYKARVD--LVFAGHVHAYER 336 (427)
T ss_pred HHHHHHHHHHHhhcccCCCEEEEEeCCCeeeccc-----ccCCcch--hHHHHHHHHHHHHHhCCc--EEEecceecccc
Confidence 9999999999864 357999999999875311 0001111 134578899999999998 899999999887
Q ss_pred ee
Q 021086 250 TR 251 (317)
Q Consensus 250 ~~ 251 (317)
..
T Consensus 337 ~~ 338 (427)
T PLN02533 337 FD 338 (427)
T ss_pred cc
Confidence 53
No 7
>KOG2679 consensus Purple (tartrate-resistant) acid phosphatase [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=1.6e-13 Score=124.24 Aligned_cols=205 Identities=14% Similarity=0.107 Sum_probs=123.8
Q ss_pred CCCCCCccceEEEEeeCCCCCChh---HHHHH---Hh-cCCCEEEEeccccccCCCCCCcccCcccccCCCCCCCCCCCC
Q 021086 33 KANHEALVSRIAFGSCANQTAPQP---IWDAI---IK-FDPQVFIWMGDNIYGDIKRPSKMFGKERTIGPWKNVPRFVPT 105 (317)
Q Consensus 33 ~p~~~~~~~riAf~SC~~~~~~~~---~~~~i---a~-~~pD~~l~lGD~iY~d~~~~~~~~~~~r~~~~w~~~p~~~~~ 105 (317)
.|+.+.+.++|.++-=-...+.++ +-..| ++ .+.||+|-+|||+|.++..+. +.|+
T Consensus 36 ~p~~~dgslsflvvGDwGr~g~~nqs~va~qmg~ige~l~idfvlS~GDNfYd~G~~~~-------------~Dp~---- 98 (336)
T KOG2679|consen 36 DPAKSDGSLSFLVVGDWGRRGSFNQSQVALQMGEIGEKLDIDFVLSTGDNFYDTGLTSE-------------NDPR---- 98 (336)
T ss_pred CCCCCCCceEEEEEcccccCCchhHHHHHHHHHhHHHhccceEEEecCCcccccCCCCC-------------CChh----
Confidence 344444567766553222233331 22333 33 699999999999999887642 2222
Q ss_pred CHHHHHHHHHhhhcChhHHHHHhhh--c---------CCCCcEEE----------EEeCC-C----CceeEEEEecCCCC
Q 021086 106 SQDEMNFKYHIIKNHPAYSRLRHNL--N---------TKAGIYTS----------YTFGP-V----GRQIKIILLDTRYH 159 (317)
Q Consensus 106 ~~~~yr~~Y~~~~~dp~l~~~~~~~--N---------~~~~iY~s----------~~~G~-~----g~~v~~~~LDtR~~ 159 (317)
|+..|...+++|.||+-+-.+ | +-..+|++ |-... . +.++.+||+|+-+.
T Consensus 99 ----Fq~sF~nIYT~pSLQkpWy~vlGNHDyrGnV~AQls~~l~~~d~RW~c~rsf~~~ae~ve~f~v~~~~f~~d~~~~ 174 (336)
T KOG2679|consen 99 ----FQDSFENIYTAPSLQKPWYSVLGNHDYRGNVEAQLSPVLRKIDKRWICPRSFYVDAEIVEMFFVDTTPFMDDTFTL 174 (336)
T ss_pred ----HHhhhhhcccCcccccchhhhccCccccCchhhhhhHHHHhhccceecccHHhhcceeeeeeccccccchhhheec
Confidence 456777777888888743222 2 11112221 11100 0 11244455444443
Q ss_pred CCCC------CCCCCCCcHHHHHHHHHHhcCCCCCeEEEEecceeecCCCCCCCCCccCCccCCCHHHHHHHHHHHHhhC
Q 021086 160 RDPL------SSDGTILGSTQWTWLEKELNGPSSAITIIVSSIQVISNLSATTGPLFYMESWGRFPKERDRLFQLIADSK 233 (317)
Q Consensus 160 R~~~------~~~~~~LG~~Q~~WL~~~L~~s~a~~kvv~s~vp~~~~~~~~~~~~~~~d~W~~~~~er~~Ll~~l~~~~ 233 (317)
.+.. ...+.-+-.+|+.||+.+|++|.|+||||+.|.|+-+... -+.-..-+++|+.+|++++
T Consensus 175 ~~~~~ydw~~v~PR~~~~~~~l~~le~~L~~S~a~wkiVvGHh~i~S~~~-----------HG~T~eL~~~LlPiL~~n~ 243 (336)
T KOG2679|consen 175 CTDDVYDWRGVLPRVKYLRALLSWLEVALKASRAKWKIVVGHHPIKSAGH-----------HGPTKELEKQLLPILEANG 243 (336)
T ss_pred ccccccccccCChHHHHHHHHHHHHHHHHHHhhcceEEEecccceehhhc-----------cCChHHHHHHHHHHHHhcC
Confidence 3321 0123444578999999999999999999999999854321 1111345899999999999
Q ss_pred CCCEEEEecCccCccceeeccCCCcceEEEcCCCccccccc
Q 021086 234 RNGVFFISGDVHFGEITRYDCDVGYALYDITSSGLTQAVEK 274 (317)
Q Consensus 234 v~~vv~LSGDvH~~~~~~~~~~~~~~~~eiTSSgl~~~~~~ 274 (317)
|+ +.++||-|+.++..-+ +-.+-=+||++-+..++.
T Consensus 244 Vd--lY~nGHDHcLQhis~~---e~~iqf~tSGagSkaw~g 279 (336)
T KOG2679|consen 244 VD--LYINGHDHCLQHISSP---ESGIQFVTSGAGSKAWRG 279 (336)
T ss_pred Cc--EEEecchhhhhhccCC---CCCeeEEeeCCcccccCC
Confidence 98 8999999999877543 233444566666655554
No 8
>PTZ00422 glideosome-associated protein 50; Provisional
Probab=99.52 E-value=9.5e-13 Score=127.07 Aligned_cols=212 Identities=16% Similarity=0.116 Sum_probs=123.1
Q ss_pred CccceEEEEeeCCCC-CCh-hHHHHHH----hcCCCEEEEeccccccCCCCCCc--ccC--cccccCC-C--CCCCCCCC
Q 021086 38 ALVSRIAFGSCANQT-APQ-PIWDAII----KFDPQVFIWMGDNIYGDIKRPSK--MFG--KERTIGP-W--KNVPRFVP 104 (317)
Q Consensus 38 ~~~~riAf~SC~~~~-~~~-~~~~~ia----~~~pD~~l~lGD~iY~d~~~~~~--~~~--~~r~~~~-w--~~~p~~~~ 104 (317)
...+||..+.+-... ..| .+-+.|. +.++||++.+|||+ .++..+.. .+. -+..... - -..|.+.+
T Consensus 24 ~~~l~F~~vGDwG~g~~~Q~~VA~~M~~~~~~~~~~FVls~GDNF-~~Gv~sv~Dp~f~~~FE~vY~~~s~~L~~Pwy~v 102 (394)
T PTZ00422 24 KAQLRFASLGNWGTGSKQQKLVASYLKQYAKNERVTFLVSPGSNF-PGGVDGLNDPKWKHCFENVYSEESGDMQIPFFTV 102 (394)
T ss_pred CCeEEEEEEecCCCCchhHHHHHHHHHHHHHhCCCCEEEECCccc-cCCCCCccchhHHhhHhhhccCcchhhCCCeEEe
Confidence 346676665554421 122 3555555 37999999999998 66654321 000 0111100 0 02355555
Q ss_pred CCHHHHHHHHHhhhc---Ch----------hHHHH---HhhhcCCCCcEEEE--Ee-----------CCCCceeEEEEec
Q 021086 105 TSQDEMNFKYHIIKN---HP----------AYSRL---RHNLNTKAGIYTSY--TF-----------GPVGRQIKIILLD 155 (317)
Q Consensus 105 ~~~~~yr~~Y~~~~~---dp----------~l~~~---~~~~N~~~~iY~s~--~~-----------G~~g~~v~~~~LD 155 (317)
...+||+.......+ .+ ++... -.+. ..+..||.+ .| |..+..++||++|
T Consensus 103 LGNHDy~Gn~~AQi~r~~~~y~~~~~~~~~~y~~~~~~~~RW-~mP~~yY~~~~~f~~~~~~~~~~~~~~~~~v~fifiD 181 (394)
T PTZ00422 103 LGQADWDGNYNAELLKGQNVYLNGHGQTDIEYDSNNDIYPKW-IMPNYWYHYFTHFTDTSGPSLLKSGHKDMSVAFIFID 181 (394)
T ss_pred CCcccccCCchhhhccccccccccccccccccccccccCCCc-cCCchhheeeeeeecccccccccccCCCCEEEEEEEE
Confidence 667776533322111 00 00000 0000 234556643 22 1123459999999
Q ss_pred CCCCCCCCCCCCCCCcHHHHHHHHHHhc--CCCCCeEEEEecceeecCCCCCCCCCccCCccCCCHHHHHHHHHHHHhhC
Q 021086 156 TRYHRDPLSSDGTILGSTQWTWLEKELN--GPSSAITIIVSSIQVISNLSATTGPLFYMESWGRFPKERDRLFQLIADSK 233 (317)
Q Consensus 156 tR~~R~~~~~~~~~LG~~Q~~WL~~~L~--~s~a~~kvv~s~vp~~~~~~~~~~~~~~~d~W~~~~~er~~Ll~~l~~~~ 233 (317)
|-...+.. +.. -..++||+||+++|+ .+.++||||+.|.|+++... + .+-..-+++|+.+|++++
T Consensus 182 T~~l~~~~-~~~-~~~~~~w~~L~~~L~~a~k~a~WkIVvGHhPIySsG~----------h-g~~~~L~~~L~PLL~ky~ 248 (394)
T PTZ00422 182 TWILSSSF-PYK-KVSERAWQDLKATLEYAPKIADYIIVVGDKPIYSSGS----------S-KGDSYLSYYLLPLLKDAQ 248 (394)
T ss_pred CchhcccC-Ccc-ccCHHHHHHHHHHHHhhccCCCeEEEEecCceeecCC----------C-CCCHHHHHHHHHHHHHcC
Confidence 97444311 111 124789999999995 44589999999999987421 0 112456889999999999
Q ss_pred CCCEEEEecCccCccceeeccCCCcceEEEcCCCcccc
Q 021086 234 RNGVFFISGDVHFGEITRYDCDVGYALYDITSSGLTQA 271 (317)
Q Consensus 234 v~~vv~LSGDvH~~~~~~~~~~~~~~~~eiTSSgl~~~ 271 (317)
|+ +++|||.|+.++.+.. .+.-|||++-+..
T Consensus 249 Vd--lYisGHDH~lq~i~~~-----gt~yIvSGaGs~~ 279 (394)
T PTZ00422 249 VD--LYISGYDRNMEVLTDE-----GTAHINCGSGGNS 279 (394)
T ss_pred cC--EEEEccccceEEecCC-----CceEEEeCccccc
Confidence 98 8999999999987532 4777887775543
No 9
>cd07395 MPP_CSTP1 Homo sapiens CSTP1 and related proteins, metallophosphatase domain. CSTP1 (complete S-transactivated protein 1) is an uncharacterized Homo sapiens protein with a metallophosphatase domain, that is transactivated by the complete S protein of hepatitis B virus. CSTP1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is th
Probab=99.41 E-value=6.4e-12 Score=115.65 Aligned_cols=117 Identities=21% Similarity=0.215 Sum_probs=82.3
Q ss_pred cEEEEEeCCCCceeEEEEecCCCCCCCCCCCCCCCcHHHHHHHHHHhcCC---CCCeEEEEecceeecCCCCCCCCCccC
Q 021086 136 IYTSYTFGPVGRQIKIILLDTRYHRDPLSSDGTILGSTQWTWLEKELNGP---SSAITIIVSSIQVISNLSATTGPLFYM 212 (317)
Q Consensus 136 iY~s~~~G~~g~~v~~~~LDtR~~R~~~~~~~~~LG~~Q~~WL~~~L~~s---~a~~kvv~s~vp~~~~~~~~~~~~~~~ 212 (317)
.|+++.+|+ ++|++||+-.+-.+. ...-++++|++||+++|+++ +.+++||++|+|++.... ....
T Consensus 117 ~~y~~~~~~----~~~i~lds~~~~~~~--~~~~~~~~ql~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~-----~~~~ 185 (262)
T cd07395 117 DYFSFWVGG----VFFIVLNSQLFFDPS--EVPELAQAQDVWLEEQLEIAKESDCKHVIVFQHIPWFLEDP-----DEED 185 (262)
T ss_pred cceEEEECC----EEEEEeccccccCcc--ccccchHHHHHHHHHHHHHHHhccCCcEEEEECcCCccCCC-----CCCc
Confidence 477888886 999999997653321 12246799999999999876 467999999999754211 0011
Q ss_pred CccCCCHHHHHHHHHHHHhhCCCCEEEEecCccCccceeeccCCCcceEEEcCCCccc
Q 021086 213 ESWGRFPKERDRLFQLIADSKRNGVFFISGDVHFGEITRYDCDVGYALYDITSSGLTQ 270 (317)
Q Consensus 213 d~W~~~~~er~~Ll~~l~~~~v~~vv~LSGDvH~~~~~~~~~~~~~~~~eiTSSgl~~ 270 (317)
..|..-...+++|.++|++++++ +++|||.|......+. .+..+++++...
T Consensus 186 ~~~~~~~~~~~~l~~ll~~~~V~--~v~~GH~H~~~~~~~~-----g~~~~~~~~~~~ 236 (262)
T cd07395 186 SYFNIPKSVRKPLLDKFKKAGVK--AVFSGHYHRNAGGRYG-----GLEMVVTSAIGA 236 (262)
T ss_pred ccCCcCHHHHHHHHHHHHhcCce--EEEECccccCCceEEC-----CEEEEEcCceec
Confidence 11222246789999999998876 8999999998876543 345566665554
No 10
>cd07396 MPP_Nbla03831 Homo sapiens Nbla03831 and related proteins, metallophosphatase domain. Nbla03831 (also known as LOC56985) is an uncharacterized Homo sapiens protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=99.33 E-value=5.7e-12 Score=116.66 Aligned_cols=190 Identities=18% Similarity=0.196 Sum_probs=110.2
Q ss_pred HHHHHhcCCCEEEEeccccccCCCCCCcccCcccccCCCC--CCCCCCCCCHHHHHHHHHhhhcChhHHHHHhhhcCCCC
Q 021086 58 WDAIIKFDPQVFIWMGDNIYGDIKRPSKMFGKERTIGPWK--NVPRFVPTSQDEMNFKYHIIKNHPAYSRLRHNLNTKAG 135 (317)
Q Consensus 58 ~~~ia~~~pD~~l~lGD~iY~d~~~~~~~~~~~r~~~~w~--~~p~~~~~~~~~yr~~Y~~~~~dp~l~~~~~~~N~~~~ 135 (317)
-+.|.+.+||+++++||.+..........+. ...+.++ ..|.....+.+|+...-........ ......
T Consensus 33 i~~i~~~~~d~vv~~GDlv~~~~~~~~~~~~--~~~~~l~~l~~p~~~v~GNHD~~~~~~~~~~~~~-------~~~~~~ 103 (267)
T cd07396 33 VEEWNRESLDFVVQLGDIIDGDNARAEEALD--AVLAILDRLKGPVHHVLGNHDLYNPSREYLLLYT-------LLGLGA 103 (267)
T ss_pred HHHHHcCCCCEEEECCCeecCCCchHHHHHH--HHHHHHHhcCCCEEEecCccccccccHhhhhccc-------ccCCCC
Confidence 3445557899999999999654321000000 0001111 2344444555555322111111000 012345
Q ss_pred cEEEEEeCCCCceeEEEEecCCCCCC---CCCC-----------------------CCCCCcHHHHHHHHHHhcCCC--C
Q 021086 136 IYTSYTFGPVGRQIKIILLDTRYHRD---PLSS-----------------------DGTILGSTQWTWLEKELNGPS--S 187 (317)
Q Consensus 136 iY~s~~~G~~g~~v~~~~LDtR~~R~---~~~~-----------------------~~~~LG~~Q~~WL~~~L~~s~--a 187 (317)
.|++|..|+ ++|++||+-.+-. +... -...++++|++||+++|++++ .
T Consensus 104 ~yysf~~~~----~~~i~lds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~~Ql~WL~~~L~~~~~~~ 179 (267)
T cd07396 104 PYYSFSPGG----IRFIVLDGYDISALGRPEDTPKAENADDNSNLGLYLSEPRFVDWNGGIGEEQLQWLRNELQEADANG 179 (267)
T ss_pred ceEEEecCC----cEEEEEeCCccccccCCCCChhhhhHHHhchhhhhccCccceeccCcCCHHHHHHHHHHHHHHHhcC
Confidence 689999986 9999999853210 0000 023588999999999998653 3
Q ss_pred CeEEEEecceeecCCCCCCCCCccCCccCCCHHHHHHHHHHHHhh-CCCCEEEEecCccCccceeeccCCCcceEEEcCC
Q 021086 188 AITIIVSSIQVISNLSATTGPLFYMESWGRFPKERDRLFQLIADS-KRNGVFFISGDVHFGEITRYDCDVGYALYDITSS 266 (317)
Q Consensus 188 ~~kvv~s~vp~~~~~~~~~~~~~~~d~W~~~~~er~~Ll~~l~~~-~v~~vv~LSGDvH~~~~~~~~~~~~~~~~eiTSS 266 (317)
...||++|.|+.+... ..... ...+++++++|+++ +++ +++|||+|........ .+..++++
T Consensus 180 ~~viV~~Hhp~~~~~~---------~~~~~-~~~~~~~~~ll~~~~~V~--~v~~GH~H~~~~~~~~-----gi~~~~~~ 242 (267)
T cd07396 180 EKVIIFSHFPLHPEST---------SPHGL-LWNHEEVLSILRAYGCVK--ACISGHDHEGGYAQRH-----GIHFLTLE 242 (267)
T ss_pred CeEEEEEeccCCCCCC---------Ccccc-ccCHHHHHHHHHhCCCEE--EEEcCCcCCCCccccC-----CeeEEEec
Confidence 5678999998754210 11111 12357889999884 443 7899999999866532 47788888
Q ss_pred CcccccccccCC
Q 021086 267 GLTQAVEKAVPA 278 (317)
Q Consensus 267 gl~~~~~~~~~~ 278 (317)
++... .+..|.
T Consensus 243 a~~~~-~~~~~~ 253 (267)
T cd07396 243 GMVET-PPESNA 253 (267)
T ss_pred hhhcC-CCCCCc
Confidence 88877 544443
No 11
>KOG1378 consensus Purple acid phosphatase [Carbohydrate transport and metabolism]
Probab=99.32 E-value=8.2e-12 Score=121.26 Aligned_cols=200 Identities=21% Similarity=0.272 Sum_probs=122.4
Q ss_pred cccccCCCCCCCCCccceEEEEeeCCCC-CChhHHHHHH-hcCCCEEEEeccccccCCCCC-C-cccCcccccCCCC-CC
Q 021086 25 CGGGNDSTKANHEALVSRIAFGSCANQT-APQPIWDAII-KFDPQVFIWMGDNIYGDIKRP-S-KMFGKERTIGPWK-NV 99 (317)
Q Consensus 25 ~~~~~~~t~p~~~~~~~riAf~SC~~~~-~~~~~~~~ia-~~~pD~~l~lGD~iY~d~~~~-~-~~~~~~r~~~~w~-~~ 99 (317)
+++...+|.| ++.-+.|+|++.=-.+. .....-..+. ..++|+|||+||..|++.... . ..++ |.+++.. .+
T Consensus 133 S~~f~F~t~p-~~~~~~~~~i~GDlG~~~~~~s~~~~~~~~~k~d~vlhiGDlsYa~~~~n~~wD~f~--r~vEp~As~v 209 (452)
T KOG1378|consen 133 SEIFSFKTPP-GQDSPTRAAIFGDMGCTEPYTSTLRNQEENLKPDAVLHIGDLSYAMGYSNWQWDEFG--RQVEPIASYV 209 (452)
T ss_pred ccceEeECCC-CccCceeEEEEccccccccccchHhHHhcccCCcEEEEecchhhcCCCCccchHHHH--hhhhhhhccC
Confidence 4566778888 44457888886433332 2223333333 357999999999999987753 1 0111 1222211 23
Q ss_pred CCCCCCCHHHHHHH----H---HhhhcChhHHHHHhhhcCC-CCcEEEEEeCCCCceeEEEEecCCCCCCCCCCCCCCCc
Q 021086 100 PRFVPTSQDEMNFK----Y---HIIKNHPAYSRLRHNLNTK-AGIYTSYTFGPVGRQIKIILLDTRYHRDPLSSDGTILG 171 (317)
Q Consensus 100 p~~~~~~~~~yr~~----Y---~~~~~dp~l~~~~~~~N~~-~~iY~s~~~G~~g~~v~~~~LDtR~~R~~~~~~~~~LG 171 (317)
|.-.+...+|+... | ..-+.-|.-. ... ...|+||++|. ++|++|++-++= ....+
T Consensus 210 Pymv~~GNHE~d~~~~~~F~~y~~Rf~mP~~~------s~s~~~l~YSfd~G~----vhfv~lsse~~~------~~~~~ 273 (452)
T KOG1378|consen 210 PYMVCSGNHEIDWPPQPCFVPYSARFNMPGNS------SESDSNLYYSFDVGG----VHFVVLSTETYY------NFLKG 273 (452)
T ss_pred ceEEecccccccCCCcccccccceeeccCCCc------CCCCCceeEEEeecc----EEEEEEeccccc------ccccc
Confidence 33333344432110 1 1111112110 011 23899999998 999999998664 33568
Q ss_pred HHHHHHHHHHhcCCC---CCeEEEEecceeecCCCCCCCCCccCCccCCCHHHHHHHHHHHHhhCCCCEEEEecCccCcc
Q 021086 172 STQWTWLEKELNGPS---SAITIIVSSIQVISNLSATTGPLFYMESWGRFPKERDRLFQLIADSKRNGVFFISGDVHFGE 248 (317)
Q Consensus 172 ~~Q~~WL~~~L~~s~---a~~kvv~s~vp~~~~~~~~~~~~~~~d~W~~~~~er~~Ll~~l~~~~v~~vv~LSGDvH~~~ 248 (317)
.+|.+||++.|++-+ .+|.|+..|.|++..-. .....+.+ +..-|..|=+++.+++|+ |++.||+|..|
T Consensus 274 ~~QY~WL~~dL~~v~r~~tPWlIv~~HrP~Y~S~~----~~~~reG~--~~~~~~~LE~l~~~~~VD--vvf~GHvH~YE 345 (452)
T KOG1378|consen 274 TAQYQWLERDLASVDRKKTPWLIVQGHRPMYCSSN----DAHYREGE--FESMREGLEPLFVKYKVD--VVFWGHVHRYE 345 (452)
T ss_pred chHHHHHHHHHHHhcccCCCeEEEEecccceecCC----chhhccCc--chhhHHHHHHHHHHhcee--EEEeccceehh
Confidence 999999999997543 58999999999975321 00122333 123466788899999998 89999999998
Q ss_pred cee
Q 021086 249 ITR 251 (317)
Q Consensus 249 ~~~ 251 (317)
...
T Consensus 346 R~~ 348 (452)
T KOG1378|consen 346 RFC 348 (452)
T ss_pred ccc
Confidence 763
No 12
>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosa
Probab=99.29 E-value=3e-11 Score=109.23 Aligned_cols=187 Identities=14% Similarity=0.193 Sum_probs=117.5
Q ss_pred HHHHHHhc--CCCEEEEeccccccCCCCCCcccCcccccCCCCCCCCCCCCCHHHHHHHHHhhhcChhHHHHHhhhcCCC
Q 021086 57 IWDAIIKF--DPQVFIWMGDNIYGDIKRPSKMFGKERTIGPWKNVPRFVPTSQDEMNFKYHIIKNHPAYSRLRHNLNTKA 134 (317)
Q Consensus 57 ~~~~ia~~--~pD~~l~lGD~iY~d~~~~~~~~~~~r~~~~w~~~p~~~~~~~~~yr~~Y~~~~~dp~l~~~~~~~N~~~ 134 (317)
+.+.+.+. +||+++++||.+........... ...+... ..|.......+|+...+..++..... ...
T Consensus 30 ~~~~i~~~~~~~d~vi~~GDl~~~~~~~~~~~~--~~~l~~~-~~p~~~v~GNHD~~~~~~~~~~~~~~--------~~~ 98 (240)
T cd07402 30 VLAHINALHPRPDLVLVTGDLTDDGSPESYERL--RELLAAL-PIPVYLLPGNHDDRAAMRAVFPELPP--------APG 98 (240)
T ss_pred HHHHHHhcCCCCCEEEECccCCCCCCHHHHHHH--HHHHhhc-CCCEEEeCCCCCCHHHHHHhhccccc--------ccc
Confidence 44445555 89999999999976322111000 0001111 34444455666655444444433211 123
Q ss_pred CcEEEEEeCCCCceeEEEEecCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCeEEEEecceeecCCCCCCCCCccCCc
Q 021086 135 GIYTSYTFGPVGRQIKIILLDTRYHRDPLSSDGTILGSTQWTWLEKELNGPSSAITIIVSSIQVISNLSATTGPLFYMES 214 (317)
Q Consensus 135 ~iY~s~~~G~~g~~v~~~~LDtR~~R~~~~~~~~~LG~~Q~~WL~~~L~~s~a~~kvv~s~vp~~~~~~~~~~~~~~~d~ 214 (317)
..++++..|+ ++|++||+-.... ....++++|++||++.|++......||++|.|.+.... ...+.
T Consensus 99 ~~~~~~~~~~----~~~i~lds~~~~~----~~~~~~~~ql~wL~~~L~~~~~~~~il~~H~pp~~~~~------~~~~~ 164 (240)
T cd07402 99 FVQYVVDLGG----WRLILLDSSVPGQ----HGGELCAAQLDWLEAALAEAPDKPTLVFLHHPPFPVGI------AWMDA 164 (240)
T ss_pred ccceeEecCC----EEEEEEeCCCCCC----cCCEECHHHHHHHHHHHHhCCCCCEEEEECCCCccCCc------hhhhh
Confidence 4567888886 9999999864322 23467899999999999988778899999998644210 01111
Q ss_pred cCCCHHHHHHHHHHHHhh-CCCCEEEEecCccCccceeeccCCCcceEEEcCCCcccccccccC
Q 021086 215 WGRFPKERDRLFQLIADS-KRNGVFFISGDVHFGEITRYDCDVGYALYDITSSGLTQAVEKAVP 277 (317)
Q Consensus 215 W~~~~~er~~Ll~~l~~~-~v~~vv~LSGDvH~~~~~~~~~~~~~~~~eiTSSgl~~~~~~~~~ 277 (317)
+. ...+++++++|.+. +++ ++++||+|.....++. ...-+++++++..+....|
T Consensus 165 ~~--~~~~~~~~~~l~~~~~v~--~v~~GH~H~~~~~~~~-----g~~~~~~gs~~~~~~~~~~ 219 (240)
T cd07402 165 IG--LRNAEALAAVLARHPNVR--AILCGHVHRPIDGSWG-----GIPLLTAPSTCHQFAPDLD 219 (240)
T ss_pred hh--CCCHHHHHHHHhcCCCee--EEEECCcCchHHeEEC-----CEEEEEcCcceeeecCCCC
Confidence 11 23478999999987 665 8899999998777653 3566777777776655544
No 13
>TIGR03767 P_acnes_RR metallophosphoesterase, PPA1498 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149 but with long inserts separating some of the shared motifs such that the homology is apparent only through multiple sequence alignment. Members of this protein family, in general, have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. Members include YP_056203.1 from Propionibacterium acnes KPA171202.
Probab=99.18 E-value=2.3e-10 Score=112.57 Aligned_cols=122 Identities=18% Similarity=0.287 Sum_probs=87.7
Q ss_pred CCcEEEEE-eCCCCceeEEEEecCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCeEEEEecceeecCCCCCCCCCccC
Q 021086 134 AGIYTSYT-FGPVGRQIKIILLDTRYHRDPLSSDGTILGSTQWTWLEKELNGPSSAITIIVSSIQVISNLSATTGPLFYM 212 (317)
Q Consensus 134 ~~iY~s~~-~G~~g~~v~~~~LDtR~~R~~~~~~~~~LG~~Q~~WL~~~L~~s~a~~kvv~s~vp~~~~~~~~~~~~~~~ 212 (317)
...||+|+ .++ ++||+||+..+- .....-|+++|++||+++|++++.+++||++|+|++..... ..
T Consensus 290 G~~YYSFd~~gg----vrfIvLDSt~~~---G~~~G~L~eeQL~WLeqeLa~a~~k~VVVf~HHPp~s~g~~------~~ 356 (496)
T TIGR03767 290 GTGYYTFDIAGG----VRGISMDTTNRA---GGDEGSLGQTQFKWIKDTLRASSDTLFVLFSHHTSWSMVNE------LT 356 (496)
T ss_pred CCceEEEEeECC----EEEEEEeCCCcC---CCcCCccCHHHHHHHHHHHhcCCCCCEEEEECCCCcccccc------cc
Confidence 45699999 776 999999997431 12234589999999999999888889999999997652110 01
Q ss_pred Ccc-CCC-HHHHHHHHHHHHhh-CCCCEEEEecCccCccceeecc----CCCcceEEEcCCCccc
Q 021086 213 ESW-GRF-PKERDRLFQLIADS-KRNGVFFISGDVHFGEITRYDC----DVGYALYDITSSGLTQ 270 (317)
Q Consensus 213 d~W-~~~-~~er~~Ll~~l~~~-~v~~vv~LSGDvH~~~~~~~~~----~~~~~~~eiTSSgl~~ 270 (317)
|.. .+. ....++|+++|+++ +|. .++|||+|...+..... ..+..++||+|+++-.
T Consensus 357 Dp~~pg~~~~n~~eLldLL~~ypnV~--aVfsGHvH~n~i~~~~~~~~~~p~~gfweI~TaSlvd 419 (496)
T TIGR03767 357 DPVDPGEKRHLGTELVSLLLEHPNVL--AWVNGHTHSNKITAHRRVEGVGKDKGFWEINTASHID 419 (496)
T ss_pred ccccccccccCHHHHHHHHhcCCCce--EEEECCcCCCccccccCCCCCCCcCCeEEEecccccc
Confidence 100 010 12347899999987 565 57999999998776542 2456899999998654
No 14
>cd00842 MPP_ASMase acid sphingomyelinase and related proteins, metallophosphatase domain. Acid sphingomyelinase (ASMase) is a ubiquitously expressed phosphodiesterase which hydrolyzes sphingomyelin in acid pH conditions to form ceramide, a bioactive second messenger, as part of the sphingomyelin signaling pathway. ASMase is localized at the noncytosolic leaflet of biomembranes (for example the luminal leaflet of endosomes, lysosomes and phagosomes, and the extracellular leaflet of plasma membranes). ASMase-deficient humans develop Niemann-Pick disease. This disease is characterized by lysosomal storage of sphingomyelin in all tissues. Although ASMase-deficient mice are resistant to stress-induced apoptosis, they have greater susceptibility to bacterial infection. The latter correlates with defective phagolysosomal fusion and antibacterial killing activity in ASMase-deficient macrophages. ASMase belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but
Probab=99.15 E-value=2.1e-10 Score=107.43 Aligned_cols=106 Identities=22% Similarity=0.221 Sum_probs=72.0
Q ss_pred CCcEEEEEeCCCCceeEEEEecCCCCCCCCCC---CCCCCcHHHHHHHHHHhcCCCC--CeEEEEecceeecCCCCCCCC
Q 021086 134 AGIYTSYTFGPVGRQIKIILLDTRYHRDPLSS---DGTILGSTQWTWLEKELNGPSS--AITIIVSSIQVISNLSATTGP 208 (317)
Q Consensus 134 ~~iY~s~~~G~~g~~v~~~~LDtR~~R~~~~~---~~~~LG~~Q~~WL~~~L~~s~a--~~kvv~s~vp~~~~~~~~~~~ 208 (317)
.+.|+++.+.. +++||+|||..+...... .....+.+|++||+++|+++++ ...+|++|+|....
T Consensus 158 ~ggYY~~~~~~---~l~vI~Lnt~~~~~~~~~~~~~~~~~~~~Ql~WL~~~L~~a~~~~~~v~I~~HiPp~~~------- 227 (296)
T cd00842 158 KGGYYSVPVKP---GLRVISLNTNLYYKKNFWLLGSNETDPAGQLQWLEDELQEAEQAGEKVWIIGHIPPGVN------- 227 (296)
T ss_pred cceEEEEEcCC---CeEEEEEeCccccccChhhhccCCCCHHHHHHHHHHHHHHHHHCCCeEEEEeccCCCCc-------
Confidence 46788887432 399999999977543221 1334578999999999987643 34568889885321
Q ss_pred CccCCccCCCHHHHHHHHHHHHhhCCCCEEEEecCccCccceeecc
Q 021086 209 LFYMESWGRFPKERDRLFQLIADSKRNGVFFISGDVHFGEITRYDC 254 (317)
Q Consensus 209 ~~~~d~W~~~~~er~~Ll~~l~~~~v~~vv~LSGDvH~~~~~~~~~ 254 (317)
.+...+.-++++.++|++..-.=+.+|+||.|..++.-+..
T Consensus 228 -----~~~~~~~~~~~~~~ii~~y~~~i~~~~~GH~H~d~~~~~~~ 268 (296)
T cd00842 228 -----SYDTLENWSERYLQIINRYSDTIAGQFFGHTHRDEFRVFYD 268 (296)
T ss_pred -----ccccchHHHHHHHHHHHHHHHhhheeeecccccceEEEEeC
Confidence 11111456788999999876111258999999998876553
No 15
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=99.06 E-value=1.6e-09 Score=100.64 Aligned_cols=188 Identities=14% Similarity=0.150 Sum_probs=102.9
Q ss_pred CCCCCCccceEEEEeeCC-CC---C------Chh----HHHHHHh--cCCCEEEEeccccccCCCCCCcccCcccccCCC
Q 021086 33 KANHEALVSRIAFGSCAN-QT---A------PQP----IWDAIIK--FDPQVFIWMGDNIYGDIKRPSKMFGKERTIGPW 96 (317)
Q Consensus 33 ~p~~~~~~~riAf~SC~~-~~---~------~~~----~~~~ia~--~~pD~~l~lGD~iY~d~~~~~~~~~~~r~~~~w 96 (317)
.|.+....+||+..|=-+ .. + ... +.+.+.+ .+||++|+.||.+-.......... .+.+...
T Consensus 7 ~~~~~~~~~~i~~iSD~Hl~~~~~~~~~~~~~~~~l~~~i~~i~~~~~~~D~vvitGDl~~~~~~~~~~~~--~~~l~~l 84 (275)
T PRK11148 7 LPLAGEARVRILQITDTHLFADEHETLLGVNTWESYQAVLEAIRAQQHEFDLIVATGDLAQDHSSEAYQHF--AEGIAPL 84 (275)
T ss_pred cccCCCCCEEEEEEcCcccCCCCCCceeccCHHHHHHHHHHHHHhhCCCCCEEEECCCCCCCCCHHHHHHH--HHHHhhc
Confidence 344555679999986433 21 1 112 3333433 369999999999863211110000 0001111
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhcChhHHHHHhhhcCCCCcEEEEEeCCCCceeEEEEecCCCCCCCCCCCCCCCcHHHHH
Q 021086 97 KNVPRFVPTSQDEMNFKYHIIKNHPAYSRLRHNLNTKAGIYTSYTFGPVGRQIKIILLDTRYHRDPLSSDGTILGSTQWT 176 (317)
Q Consensus 97 ~~~p~~~~~~~~~yr~~Y~~~~~dp~l~~~~~~~N~~~~iY~s~~~G~~g~~v~~~~LDtR~~R~~~~~~~~~LG~~Q~~ 176 (317)
..|.+.....+|++..+..+.... ....++.+..++ ++.|++||+..+-. ...-++++|++
T Consensus 85 -~~Pv~~v~GNHD~~~~~~~~~~~~-----------~~~~~~~~~~~~---~~~~i~Lds~~~g~----~~G~l~~~ql~ 145 (275)
T PRK11148 85 -RKPCVWLPGNHDFQPAMYSALQDA-----------GISPAKHVLIGE---HWQILLLDSQVFGV----PHGELSEYQLE 145 (275)
T ss_pred -CCcEEEeCCCCCChHHHHHHHhhc-----------CCCccceEEecC---CEEEEEecCCCCCC----cCCEeCHHHHH
Confidence 234444555666543332222111 011122233343 38999999964322 23357899999
Q ss_pred HHHHHhcCCCCCeEEEEecceeecCCCCCCCCCccCCccCCCHHHHHHHHHHHHhh-CCCCEEEEecCccCcccee
Q 021086 177 WLEKELNGPSSAITIIVSSIQVISNLSATTGPLFYMESWGRFPKERDRLFQLIADS-KRNGVFFISGDVHFGEITR 251 (317)
Q Consensus 177 WL~~~L~~s~a~~kvv~s~vp~~~~~~~~~~~~~~~d~W~~~~~er~~Ll~~l~~~-~v~~vv~LSGDvH~~~~~~ 251 (317)
||+++|++.+.+..+|+.|++.++... + ..|... ....++|+++|+++ +++ ++|+||+|.....+
T Consensus 146 wL~~~L~~~~~~~~vv~~hH~P~~~~~----~--~~d~~~--l~n~~~l~~ll~~~~~v~--~vl~GH~H~~~~~~ 211 (275)
T PRK11148 146 WLERKLADAPERHTLVLLHHHPLPAGC----A--WLDQHS--LRNAHELAEVLAKFPNVK--AILCGHIHQELDLD 211 (275)
T ss_pred HHHHHHhhCCCCCeEEEEcCCCCCCCc----c--hhhccC--CCCHHHHHHHHhcCCCce--EEEecccChHHhce
Confidence 999999887777777766654332110 0 011111 12457899999986 665 78999999976544
No 16
>cd07401 MPP_TMEM62_N Homo sapiens TMEM62, N-terminal metallophosphatase domain. TMEM62 (transmembrane protein 62) is an uncharacterized Homo sapiens transmembrane protein with an N-terminal metallophosphatase domain. TMEM62 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=98.93 E-value=1e-08 Score=94.48 Aligned_cols=88 Identities=17% Similarity=0.124 Sum_probs=62.4
Q ss_pred eEEEEecCCCCCCCCCC--CCCCCcHHHHHHHHHHhcCC-CCCeEEEEecceeecCCCCCCCCCccCCccCCCHHHHHHH
Q 021086 149 IKIILLDTRYHRDPLSS--DGTILGSTQWTWLEKELNGP-SSAITIIVSSIQVISNLSATTGPLFYMESWGRFPKERDRL 225 (317)
Q Consensus 149 v~~~~LDtR~~R~~~~~--~~~~LG~~Q~~WL~~~L~~s-~a~~kvv~s~vp~~~~~~~~~~~~~~~d~W~~~~~er~~L 225 (317)
+.|++||+-.+.+...+ ...-++++|++||++.|+++ +++++||++|.|+.... + ...+ ..+ ++
T Consensus 124 ~~~I~Ldt~~~~~~~~~~~~~g~l~~~ql~wL~~~L~~~~~~~~~IV~~HhP~~~~~-----~---~~~~----~~~-~~ 190 (256)
T cd07401 124 YSFIGVDPTLFPGPKRPFNFFGSLDKKLLDRLEKELEKSTNSNYTIWFGHYPTSTII-----S---PSAK----SSS-KF 190 (256)
T ss_pred EEEEEEcCccCCCCCCCCceeccCCHHHHHHHHHHHHhcccCCeEEEEEcccchhcc-----C---CCcc----hhH-HH
Confidence 99999999765332111 12457899999999999865 46799999999973210 0 0111 122 39
Q ss_pred HHHHHhhCCCCEEEEecCccCcccee
Q 021086 226 FQLIADSKRNGVFFISGDVHFGEITR 251 (317)
Q Consensus 226 l~~l~~~~v~~vv~LSGDvH~~~~~~ 251 (317)
+++|++++++ ++||||+|..+...
T Consensus 191 ~~ll~~~~v~--~vl~GH~H~~~~~~ 214 (256)
T cd07401 191 KDLLKKYNVT--AYLCGHLHPLGGLE 214 (256)
T ss_pred HHHHHhcCCc--EEEeCCccCCCcce
Confidence 9999999886 78999999998743
No 17
>TIGR03768 RPA4764 metallophosphoesterase, RPA4764 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149. Members of this protein family usually have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. This model and TIGR03767 divide a narrow clade of pfam00149-related enzymes.
Probab=98.91 E-value=7.4e-09 Score=101.25 Aligned_cols=125 Identities=18% Similarity=0.343 Sum_probs=84.7
Q ss_pred CcEEEEEe-CCCCceeEEEEecCCCCCCC---CCCCCCCCcHHHHHHHHHHhcCCCC--CeEEEEecceeecCCCCCCCC
Q 021086 135 GIYTSYTF-GPVGRQIKIILLDTRYHRDP---LSSDGTILGSTQWTWLEKELNGPSS--AITIIVSSIQVISNLSATTGP 208 (317)
Q Consensus 135 ~iY~s~~~-G~~g~~v~~~~LDtR~~R~~---~~~~~~~LG~~Q~~WL~~~L~~s~a--~~kvv~s~vp~~~~~~~~~~~ 208 (317)
..||+|+. |+. .+++|+||+-.+-.. .....-.|+++|++||+++|+.+++ .+.|+++|.|+....
T Consensus 292 ~~yYsFd~~g~v--plrvIvLDSt~~~~~~s~pG~~~G~Ld~eQLaWLe~~La~a~a~~p~VVV~hHpPi~t~g------ 363 (492)
T TIGR03768 292 FACYSFVPKSDV--PLKVIVLDDTQSEHDGSHDIHGHGSLDAKRWDWLKAELARGQADGQLMIIAAHIPIAVSP------ 363 (492)
T ss_pred cceeEEecCCCc--ceEEEEECCCccccccCCCCCcceeeCHHHHHHHHHHHHhCcCCCceEEEEeCCCcccCC------
Confidence 36999994 630 159999998754321 1223456899999999999987753 478888999985410
Q ss_pred CccCCccCC--------CHH--HHHHHHHHHHhhCCCCEE-EEecCccCccceeeccC----CCcceEEEcCCCcc
Q 021086 209 LFYMESWGR--------FPK--ERDRLFQLIADSKRNGVF-FISGDVHFGEITRYDCD----VGYALYDITSSGLT 269 (317)
Q Consensus 209 ~~~~d~W~~--------~~~--er~~Ll~~l~~~~v~~vv-~LSGDvH~~~~~~~~~~----~~~~~~eiTSSgl~ 269 (317)
.-..+.|.. ... .-.+|+++|+++. ||+ +||||+|...+...+.. .+..++||+++++-
T Consensus 364 i~~md~w~~~~~~~~~~L~n~~~~~eLlaLL~~hP--nVla~LsGHvHrn~v~a~~~p~~~~pe~gFWeveTaSl~ 437 (492)
T TIGR03768 364 IGSEMEWWLGAADANPDLQNAVSLTGLVTTLQKYP--NLLMWIAGHRHLNTVKAFPSPDPARPEYGFWQVETASLR 437 (492)
T ss_pred ccchhhhccccccccccccccccHHHHHHHHhcCC--CeEEEEcCCcccccccccCCCCCCCCcCceEEEeehhhc
Confidence 012345552 111 1248999999873 444 99999999887765432 45789999888754
No 18
>cd08163 MPP_Cdc1 Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. Cdc1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site
Probab=98.84 E-value=3.6e-08 Score=91.04 Aligned_cols=121 Identities=17% Similarity=0.178 Sum_probs=77.2
Q ss_pred EEEEEeCCCCceeEEEEecCCCCCCCCCCCCCCCcHHHHHHHHHHhcCC-CCCeEEEEecceeecCCCCCCCCC------
Q 021086 137 YTSYTFGPVGRQIKIILLDTRYHRDPLSSDGTILGSTQWTWLEKELNGP-SSAITIIVSSIQVISNLSATTGPL------ 209 (317)
Q Consensus 137 Y~s~~~G~~g~~v~~~~LDtR~~R~~~~~~~~~LG~~Q~~WL~~~L~~s-~a~~kvv~s~vp~~~~~~~~~~~~------ 209 (317)
++.+.+|+ ++|++||+-..-.. ...-++++|++||++.|+.. ....+||++|+|++.......||.
T Consensus 118 ~~~~~~~~----~~fV~Lds~~l~~~---~~~~~~~~~~~~l~~~l~~~~~~~p~ILl~H~Plyr~~~~~cg~~re~~~~ 190 (257)
T cd08163 118 SRVIDVGN----HTFVILDTISLSNK---DDPDVYQPPREFLHSFSAMKVKSKPRILLTHVPLYRPPNTSCGPLRESKTP 190 (257)
T ss_pred ceEEEECC----EEEEEEccccccCC---cccccchhHHHHHHhhhhccCCCCcEEEEeccccccCCCCCCCCccccCCC
Confidence 46788887 99999999754332 23347789999999998765 345789999999975432222221
Q ss_pred ---ccCCccCCC--HHHHHHHHHHHHhhCCCCEEEEecCccCccceeecc---CCCcceEEEcCCCcc
Q 021086 210 ---FYMESWGRF--PKERDRLFQLIADSKRNGVFFISGDVHFGEITRYDC---DVGYALYDITSSGLT 269 (317)
Q Consensus 210 ---~~~d~W~~~--~~er~~Ll~~l~~~~v~~vv~LSGDvH~~~~~~~~~---~~~~~~~eiTSSgl~ 269 (317)
....+|... +..=++||+.| +. .+++|||.|.+.....+. +....+.|+|-.+++
T Consensus 191 ~~~~~g~~yq~~l~~~~s~~il~~~---~P--~~vfsGhdH~~C~~~h~~~~~~~~~~~~E~tv~S~s 253 (257)
T cd08163 191 LPYGYGYQYQNLLEPSLSEVILKAV---QP--VIAFSGDDHDYCEVVHEYQFNGKSGSTREITVKSIS 253 (257)
T ss_pred CCCCCCccceeecCHHHHHHHHHhh---CC--cEEEecCCCccceeEcccccCCCCCCceEEEecccc
Confidence 112334422 12234666555 33 489999999987665441 234567888876654
No 19
>cd07399 MPP_YvnB Bacillus subtilis YvnB and related proteins, metallophosphatase domain. YvnB (BSU35040) is an uncharacterized Bacillus subtilis protein with a metallophosphatase domain. This family includes bacterial and eukaryotic proteins similar to YvnB. YvnB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for
Probab=98.71 E-value=7.1e-07 Score=80.05 Aligned_cols=89 Identities=13% Similarity=0.092 Sum_probs=59.4
Q ss_pred cHHHHHHHHHHhcCCCCCeEEEEecceeecCCCCCCCCCccCCc-cCCCHHHHHHHHHHHHhh-CCCCEEEEecCccCcc
Q 021086 171 GSTQWTWLEKELNGPSSAITIIVSSIQVISNLSATTGPLFYMES-WGRFPKERDRLFQLIADS-KRNGVFFISGDVHFGE 248 (317)
Q Consensus 171 G~~Q~~WL~~~L~~s~a~~kvv~s~vp~~~~~~~~~~~~~~~d~-W~~~~~er~~Ll~~l~~~-~v~~vv~LSGDvH~~~ 248 (317)
+++|++||++.|++.+..+.||+.|.|+.+... ...... |......++.+.++|+++ +|. .++|||+|...
T Consensus 90 ~~~ql~WL~~~L~~~~~~~~iv~~H~p~~~~~~-----~~~~~~~~~~~~~~~~~~~~ll~~~~~V~--~v~~GH~H~~~ 162 (214)
T cd07399 90 RDEVLQWANEVLKKHPDRPAILTTHAYLNCDDS-----RPDSIDYDSDVNDGQQIWDKLVKKNDNVF--MVLSGHVHGAG 162 (214)
T ss_pred CHHHHHHHHHHHHHCCCCCEEEEecccccCCCC-----cCcccccccccccHHHHHHHHHhCCCCEE--EEEccccCCCc
Confidence 589999999999987778899999999764321 111111 222234455677888876 565 68999999997
Q ss_pred ceee--ccCCCcceEEEcCC
Q 021086 249 ITRY--DCDVGYALYDITSS 266 (317)
Q Consensus 249 ~~~~--~~~~~~~~~eiTSS 266 (317)
.... ....+-+++++-+.
T Consensus 163 ~~~~~~~~~~g~~v~~~~~~ 182 (214)
T cd07399 163 RTTLVSVGDAGRTVHQMLAD 182 (214)
T ss_pred eEEEcccCCCCCEeeEEeec
Confidence 7765 22234556666443
No 20
>cd07392 MPP_PAE1087 Pyrobaculum aerophilum PAE1087 and related proteins, metallophosphatase domain. PAE1087 is an uncharacterized Pyrobaculum aerophilum protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordina
Probab=97.86 E-value=4.7e-05 Score=65.62 Aligned_cols=91 Identities=13% Similarity=0.154 Sum_probs=58.7
Q ss_pred EEeCCCCceeEEEEecCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCCeEEEEecceeecCCCCCCCCCccCCccC-CC
Q 021086 140 YTFGPVGRQIKIILLDTRYHRDPLSSDGTILGSTQWTWLEKELNGPSSAITIIVSSIQVISNLSATTGPLFYMESWG-RF 218 (317)
Q Consensus 140 ~~~G~~g~~v~~~~LDtR~~R~~~~~~~~~LG~~Q~~WL~~~L~~s~a~~kvv~s~vp~~~~~~~~~~~~~~~d~W~-~~ 218 (317)
+.++. +.|+.+|+-... +. .....+.++|.+|+ +.+..+..+.+|+++|.|.++.. .|... .+
T Consensus 83 ~~~~~----~~~~g~~~~~~~-~~-~~~~~~~~~~l~~~-~~l~~~~~~~~ilv~H~pp~~~~---------~d~~~~~~ 146 (188)
T cd07392 83 VEVGG----YTFVGIGGSNPT-PF-NTPIELSEEEIVSD-GRLNNLLAKNLILVTHAPPYGTA---------VDRVSGGF 146 (188)
T ss_pred EEECC----EEEEEeCCCCCC-CC-CCccccCHHHHHHh-hhhhccCCCCeEEEECCCCcCCc---------ccccCCCC
Confidence 44564 899999863211 10 11224578999999 66666667889999999865421 11111 11
Q ss_pred HHHHHHHHHHHHhhCCCCEEEEecCccCcc
Q 021086 219 PKERDRLFQLIADSKRNGVFFISGDVHFGE 248 (317)
Q Consensus 219 ~~er~~Ll~~l~~~~v~~vv~LSGDvH~~~ 248 (317)
....++|.+++++.+++ ++|+||+|...
T Consensus 147 ~~g~~~l~~li~~~~~~--~~l~GH~H~~~ 174 (188)
T cd07392 147 HVGSKAIRKFIEERQPL--LCICGHIHESR 174 (188)
T ss_pred ccCCHHHHHHHHHhCCc--EEEEecccccc
Confidence 12346788888887776 78999999985
No 21
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain. DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat
Probab=97.70 E-value=0.00014 Score=66.00 Aligned_cols=61 Identities=16% Similarity=0.181 Sum_probs=45.1
Q ss_pred HHHHHHHHHHhcCCCC----CeEEEEecceeecCCCCCCCCCccCCccCCCHHHHHHHHHHHHhhCCCCEEEEecCccCc
Q 021086 172 STQWTWLEKELNGPSS----AITIIVSSIQVISNLSATTGPLFYMESWGRFPKERDRLFQLIADSKRNGVFFISGDVHFG 247 (317)
Q Consensus 172 ~~Q~~WL~~~L~~s~a----~~kvv~s~vp~~~~~~~~~~~~~~~d~W~~~~~er~~Ll~~l~~~~v~~vv~LSGDvH~~ 247 (317)
++|..||++.|++... .++|+++|.|.++.. . ..+++.+.+++.+++ ++++||+|..
T Consensus 145 ~~~l~~l~~~L~~~~~~~~~~~~i~~~H~p~~~~~------------~-----~~~~~~~~~~~~~v~--~vl~GH~H~~ 205 (232)
T cd07393 145 ERELERLELSLKAAKKREKEKIKIVMLHYPPANEN------------G-----DDSPISKLIEEYGVD--ICVYGHLHGV 205 (232)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCEEEEECCCCcCCC------------C-----CHHHHHHHHHHcCCC--EEEECCCCCC
Confidence 6799999999976432 478999998854310 0 124678888888887 8899999999
Q ss_pred ccee
Q 021086 248 EITR 251 (317)
Q Consensus 248 ~~~~ 251 (317)
....
T Consensus 206 ~~~~ 209 (232)
T cd07393 206 GRDR 209 (232)
T ss_pred cccc
Confidence 7654
No 22
>cd07383 MPP_Dcr2 Saccharomyces cerevisiae DCR2 phosphatase and related proteins, metallophosphatase domain. DCR2 phosphatase (Dosage-dependent Cell Cycle Regulator 2) functions together with DCR1 (Gid8) in a common pathway to accelerate initiation of DNA replication in Saccharomyces cerevisiae. Genetic analysis suggests that DCR1 functions upstream of DCR2. DCR2 interacts with and dephosphorylates Sic1, an inhibitor of mitotic cyclin/cyclin-dependent kinase complexes, which may serve to trigger the initiation of cell division. DCR2 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAP
Probab=97.69 E-value=0.00023 Score=62.75 Aligned_cols=81 Identities=14% Similarity=0.123 Sum_probs=49.1
Q ss_pred CCCCcHHHHHHHHHHhcCC-----CCCeEEEEecceeecCCCCCC----CCCccCCccCCCHHHHHHHHHHHHh-hCCCC
Q 021086 167 GTILGSTQWTWLEKELNGP-----SSAITIIVSSIQVISNLSATT----GPLFYMESWGRFPKERDRLFQLIAD-SKRNG 236 (317)
Q Consensus 167 ~~~LG~~Q~~WL~~~L~~s-----~a~~kvv~s~vp~~~~~~~~~----~~~~~~d~W~~~~~er~~Ll~~l~~-~~v~~ 236 (317)
...+.++|.+||+++|.+. ...+.++..|+|......... .+....|. .........+++.|.+ .+++
T Consensus 89 ~g~l~~~ql~wL~~~l~~~~~~~~~~~~~l~f~H~P~~~~~~~~~~~~~~~g~~~d~-~~~~~~~~~~~~~~~~~~~v~- 166 (199)
T cd07383 89 YDWIRPSQIEWFKETSAALKKKYGKPIPSLAFFHIPLPEYREVWEGKGKVPGINNEK-VCCPKINSGLFKALLERGDVK- 166 (199)
T ss_pred CCCCCHHHHHHHHHHHHHHhhccCCCCcceEEEecChHHHHhhhcccCCCCccCCcc-cCCCcCCcHHHHHHHHcCCeE-
Confidence 3467899999999999764 346889999998643211000 00011121 1122344566666644 4665
Q ss_pred EEEEecCccCccce
Q 021086 237 VFFISGDVHFGEIT 250 (317)
Q Consensus 237 vv~LSGDvH~~~~~ 250 (317)
++++||+|..+..
T Consensus 167 -~v~~GH~H~~~~~ 179 (199)
T cd07383 167 -GVFCGHDHGNDFC 179 (199)
T ss_pred -EEEeCCCCCccee
Confidence 7899999996544
No 23
>COG1409 Icc Predicted phosphohydrolases [General function prediction only]
Probab=96.90 E-value=0.01 Score=54.39 Aligned_cols=84 Identities=19% Similarity=0.313 Sum_probs=53.5
Q ss_pred eEEEEecCCCCCCCCCCCCCCCcHHHHHHHHHHhcCCCCC---eEEEEecceeecCCCCCCCCCccCCccCCCHHHHHHH
Q 021086 149 IKIILLDTRYHRDPLSSDGTILGSTQWTWLEKELNGPSSA---ITIIVSSIQVISNLSATTGPLFYMESWGRFPKERDRL 225 (317)
Q Consensus 149 v~~~~LDtR~~R~~~~~~~~~LG~~Q~~WL~~~L~~s~a~---~kvv~s~vp~~~~~~~~~~~~~~~d~W~~~~~er~~L 225 (317)
++++.+|+-..-.+ ...+++.|++||++.|+..... ..+++.+.|+..... ....+.+ ....++
T Consensus 105 ~~~~~~d~~~~~~~----~G~~~~~q~~~l~~~l~~~~~~~~~~~v~~~hh~~~~~~~-----~~~~~~l----~~~~~~ 171 (301)
T COG1409 105 WRVIGLDSSVPGVP----LGRLGAEQLDWLEEALAAAPERAKDTVVVLHHHPLPSPGT-----GVDRVAL----RDAGEL 171 (301)
T ss_pred eEEEEecCCCCCCC----CCEECHHHHHHHHHHHHhCccccCceEEEecCCCCCCCCC-----ccceeee----ecchhH
Confidence 89999999755432 3348999999999999876554 445666655432211 0011112 223455
Q ss_pred HHHHHhhC--CCCEEEEecCccCc
Q 021086 226 FQLIADSK--RNGVFFISGDVHFG 247 (317)
Q Consensus 226 l~~l~~~~--v~~vv~LSGDvH~~ 247 (317)
...+...+ ++ ++|+||+|..
T Consensus 172 ~~~~~~~~~~v~--~vl~GH~H~~ 193 (301)
T COG1409 172 LDVLIAHGNDVR--LVLSGHIHLA 193 (301)
T ss_pred HHHHHhcCCceE--EEEeCccccc
Confidence 56666665 55 8999999998
No 24
>KOG1432 consensus Predicted DNA repair exonuclease SIA1 [General function prediction only]
Probab=96.64 E-value=0.024 Score=53.94 Aligned_cols=99 Identities=11% Similarity=0.138 Sum_probs=53.5
Q ss_pred eeEEEEecCCCCCCCC--CCCCCCCcHHHHHHHHHHhcC-----CC-CC-eEEEEecceeecCCCC----CCCCCccCCc
Q 021086 148 QIKIILLDTRYHRDPL--SSDGTILGSTQWTWLEKELNG-----PS-SA-ITIIVSSIQVISNLSA----TTGPLFYMES 214 (317)
Q Consensus 148 ~v~~~~LDtR~~R~~~--~~~~~~LG~~Q~~WL~~~L~~-----s~-a~-~kvv~s~vp~~~~~~~----~~~~~~~~d~ 214 (317)
...+++||+-++-+.+ -+.-.-+++.|+.||+++-.. ++ .+ --++.=|+|+ +.+.. ++-.....|.
T Consensus 202 v~~lyfld~~~~~s~~~~~~~Ydwik~sq~~wl~~~~~~~~~~~~~~~P~p~La~~HIP~-~E~~~~~~~tp~~g~~~E~ 280 (379)
T KOG1432|consen 202 VFNLYFLDSSSYTSVPPLLPGYDWIKESQLEWLSDTSKEFKEPNSKYNPQPGLAFFHIPL-PEFLELESKTPLIGVFQEG 280 (379)
T ss_pred eeeEEEEecCCcccccccccCccchhhhhHHHHhhhhhhhhcccCccCCCCceEEEEccc-HHHhhccCCCcccceeecc
Confidence 3678899998775532 233456789999999987622 11 11 2344445553 21100 0000011222
Q ss_pred cCCCHHHHHHHHHHHH-hhCCCCEEEEecCccCccce
Q 021086 215 WGRFPKERDRLFQLIA-DSKRNGVFFISGDVHFGEIT 250 (317)
Q Consensus 215 W~~~~~er~~Ll~~l~-~~~v~~vv~LSGDvH~~~~~ 250 (317)
-.. +.--...++.|. ..+|+ .+.+||-|.....
T Consensus 281 ~~~-~~~~sg~~~~L~~r~~Vk--~vf~GHdHvNDfC 314 (379)
T KOG1432|consen 281 VSA-SKHNSGFLTTLVNRGNVK--GVFCGHDHVNDFC 314 (379)
T ss_pred ccc-cccccHHHHHHHhccCcc--eEEecccccccee
Confidence 211 222345566666 56788 6799999997554
No 25
>TIGR03729 acc_ester putative phosphoesterase. Members of this protein family belong to the larger family pfam00149 (calcineurin-like phosphoesterase), a family largely defined by small motifs of metal-chelating residues. The subfamily in this model shows a good but imperfect co-occurrence in species with domain TIGR03715 that defines a novel class of signal peptide typical of the accessory secretory system.
Probab=96.38 E-value=0.0047 Score=56.08 Aligned_cols=76 Identities=17% Similarity=0.093 Sum_probs=51.1
Q ss_pred CCcHHHHHHHHHHhcCCCCCeEEEEecceeecCCCCCCCCCccCCccCCCH--HHHHHHHHHHHhhCCCCEEEEecCccC
Q 021086 169 ILGSTQWTWLEKELNGPSSAITIIVSSIQVISNLSATTGPLFYMESWGRFP--KERDRLFQLIADSKRNGVFFISGDVHF 246 (317)
Q Consensus 169 ~LG~~Q~~WL~~~L~~s~a~~kvv~s~vp~~~~~~~~~~~~~~~d~W~~~~--~er~~Ll~~l~~~~v~~vv~LSGDvH~ 246 (317)
-+.++|.+||++.|++...+-.||++|.|..+..-. .+ .....|.... .....|.++|++++++ ++++||+|.
T Consensus 146 ~~~~~~l~~l~~~l~~~~~~~~ivvtH~pP~~~~~~--~~-~~~~~~~~~~~~~~s~~l~~li~~~~v~--~~i~GH~H~ 220 (239)
T TIGR03729 146 ERTAIVLKQLKKQLNQLDNKQVIFVTHFVPHRDFIY--VP-MDHRRFDMFNAFLGSQHFGQLLVKYEIK--DVIFGHLHR 220 (239)
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEEcccchHHHhc--CC-CCCcchhhhhhccChHHHHHHHHHhCCC--EEEECCccC
Confidence 356889999999998877777899999875432100 00 0112354322 1246788888888876 789999999
Q ss_pred ccc
Q 021086 247 GEI 249 (317)
Q Consensus 247 ~~~ 249 (317)
...
T Consensus 221 ~~~ 223 (239)
T TIGR03729 221 RFG 223 (239)
T ss_pred CCC
Confidence 963
No 26
>cd07400 MPP_YydB Bacillus subtilis YydB and related proteins, metallophosphatase domain. YydB (BSU40220) is an uncharacterized Bacillus subtilis protein that belongs to the following Bacillus subtilis gene cluster yydB-yydC-yydD-yydG-yydH-yydI-yydJ. YydB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productiv
Probab=96.29 E-value=0.052 Score=44.80 Aligned_cols=50 Identities=14% Similarity=0.228 Sum_probs=34.7
Q ss_pred EEEecceeecCCCCCCCCCccCCccCCCHHHHHHHHHHHHhhCCCCEEEEecCccCccceee
Q 021086 191 IIVSSIQVISNLSATTGPLFYMESWGRFPKERDRLFQLIADSKRNGVFFISGDVHFGEITRY 252 (317)
Q Consensus 191 vv~s~vp~~~~~~~~~~~~~~~d~W~~~~~er~~Ll~~l~~~~v~~vv~LSGDvH~~~~~~~ 252 (317)
|++.|.|..+.... ..+.+ ..++++++++++.+++ ++|+||+|......+
T Consensus 81 iv~~Hhp~~~~~~~------~~~~~----~~~~~~~~~l~~~~~~--~~l~GH~H~~~~~~~ 130 (144)
T cd07400 81 IVVLHHPLVPPPGS------GRERL----LDAGDALKLLAEAGVD--LVLHGHKHVPYVGNI 130 (144)
T ss_pred EEEecCCCCCCCcc------ccccC----CCHHHHHHHHHHcCCC--EEEECCCCCcCeeec
Confidence 88999886543110 11111 1567899999988877 899999999987664
No 27
>PF00149 Metallophos: Calcineurin-like phosphoesterase; InterPro: IPR004843 This domain is found in a diverse range of phosphoesterases [], including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases, as well as nucleases such as bacterial SbcD or yeast MRE11. The most conserved regions in this domain centre around the metal chelating residues.; GO: 0016787 hydrolase activity; PDB: 2IAE_C 3DW8_F 3FGA_C 2IE4_C 2NYM_C 2NYL_C 3K7V_C 2NPP_C 2IE3_C 3K7W_C ....
Probab=96.26 E-value=0.0043 Score=50.41 Aligned_cols=66 Identities=24% Similarity=0.370 Sum_probs=45.2
Q ss_pred HHHHHHHHHHhcCCCCCeEEEEecceeecCCCCCCCCCccCCccCCCHHHHHHHHHHHHhhCCCCEEEEecCccC
Q 021086 172 STQWTWLEKELNGPSSAITIIVSSIQVISNLSATTGPLFYMESWGRFPKERDRLFQLIADSKRNGVFFISGDVHF 246 (317)
Q Consensus 172 ~~Q~~WL~~~L~~s~a~~kvv~s~vp~~~~~~~~~~~~~~~d~W~~~~~er~~Ll~~l~~~~v~~vv~LSGDvH~ 246 (317)
+.|+.|+...+......++||++|.|+.+.... ...-......++.+..++++.++. ++++||.|.
T Consensus 134 ~~~~~~~~~~~~~~~~~~~iv~~H~p~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~v~--~~~~GH~H~ 199 (200)
T PF00149_consen 134 QEWWLWLLLLLEAKNDDPVIVFTHHPPYSSSSD-------SSSYGNESKGREALEELLKKYNVD--LVLSGHTHR 199 (200)
T ss_dssp HHHHHHHHHHHHEEEESEEEEEESSSSSTTSSS-------THHHSSEEEHHHHHHHHHHHTTCS--EEEEESSSS
T ss_pred hhcccccccccccccccceeEEEecCCCCcccc-------ccccchhhccHHHHHHHHhhCCCC--EEEeCceec
Confidence 456666666666667889999999997543210 000011234678888888988887 899999996
No 28
>cd07385 MPP_YkuE_C Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain. YkuE is an uncharacterized Bacillus subtilis protein with a C-terminal metallophosphatase domain and an N-terminal twin-arginine (RR) motif. An RR-signal peptide derived from the Bacillus subtilis YkuE protein can direct Tat-dependent secretion of agarase in Streptomyces lividans. This is an indication that YkuE is transported by the Bacillus subtilis Tat (Twin-arginine translocation) pathway machinery. YkuE belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-dia
Probab=96.05 E-value=0.047 Score=48.45 Aligned_cols=42 Identities=21% Similarity=0.256 Sum_probs=29.8
Q ss_pred cceEEEEeeCCCCCC------hhHHHHHHhcCCCEEEEeccccccCCC
Q 021086 40 VSRIAFGSCANQTAP------QPIWDAIIKFDPQVFIWMGDNIYGDIK 81 (317)
Q Consensus 40 ~~riAf~SC~~~~~~------~~~~~~ia~~~pD~~l~lGD~iY~d~~ 81 (317)
.+||++.|--+.... ..+.+.+.+++||+++++||.+.....
T Consensus 1 ~~~i~~~sDlH~~~~~~~~~~~~~~~~~~~~~~d~vl~~GD~~~~~~~ 48 (223)
T cd07385 1 GLRIAHLSDLHLGPFVSRERLERLVEKINALKPDLVVLTGDLVDGSVD 48 (223)
T ss_pred CCEEEEEeecCCCccCCHHHHHHHHHHHhccCCCEEEEcCcccCCcch
Confidence 368999987775422 234444556899999999999986543
No 29
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi
Probab=95.30 E-value=0.02 Score=50.62 Aligned_cols=80 Identities=11% Similarity=-0.025 Sum_probs=45.7
Q ss_pred ceeEEEEecCCCCCCCCCCCCCCCcHHHHHHHHHHh-cCCCCCeEEEEecceeecCCCCCCCCCccCCccCCCHHHHHHH
Q 021086 147 RQIKIILLDTRYHRDPLSSDGTILGSTQWTWLEKEL-NGPSSAITIIVSSIQVISNLSATTGPLFYMESWGRFPKERDRL 225 (317)
Q Consensus 147 ~~v~~~~LDtR~~R~~~~~~~~~LG~~Q~~WL~~~L-~~s~a~~kvv~s~vp~~~~~~~~~~~~~~~d~W~~~~~er~~L 225 (317)
.++.|+.++...... ...+.++++..+ ..++...+|++.|.++.+.... .... ....
T Consensus 124 ~~v~i~g~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~Il~~H~~~~~~~~~------~~~~-------~~~~ 181 (223)
T cd00840 124 TGVAIYGLPYLRRSR---------LRDLLADAELRPRPLDPDDFNILLLHGGVAGAGPS------DSER-------APFV 181 (223)
T ss_pred eEEEEEECCCCCHHH---------HHHHHHHHHHHhhccCCCCcEEEEEeeeeecCCCC------cccc-------cccC
Confidence 357777777542211 123333334333 3455778999999887542100 0000 2334
Q ss_pred HHHHHhhCCCCEEEEecCccCccce
Q 021086 226 FQLIADSKRNGVFFISGDVHFGEIT 250 (317)
Q Consensus 226 l~~l~~~~v~~vv~LSGDvH~~~~~ 250 (317)
++.+...+++ ++++||+|.....
T Consensus 182 ~~~~~~~~~d--~v~~GH~H~~~~~ 204 (223)
T cd00840 182 PEALLPAGFD--YVALGHIHRPQII 204 (223)
T ss_pred cHhhcCcCCC--EEECCCcccCeee
Confidence 4556667777 8899999998754
No 30
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=94.69 E-value=0.71 Score=41.81 Aligned_cols=76 Identities=8% Similarity=0.050 Sum_probs=46.9
Q ss_pred eEEEEecCCCCCCCCCCCCCCCcHHHH----HHHHH----HhcCCCCCeEEEEecceeecCCCCCCCCCccCCccCCCHH
Q 021086 149 IKIILLDTRYHRDPLSSDGTILGSTQW----TWLEK----ELNGPSSAITIIVSSIQVISNLSATTGPLFYMESWGRFPK 220 (317)
Q Consensus 149 v~~~~LDtR~~R~~~~~~~~~LG~~Q~----~WL~~----~L~~s~a~~kvv~s~vp~~~~~~~~~~~~~~~d~W~~~~~ 220 (317)
+.|+-++... +++ .-+.++|. +||.+ .+........|+++|.|-+.. +..+ .
T Consensus 107 ~~~~GlGGs~-~~~-----~e~sE~e~~~~~~~~~~~~l~~~~~~~~~~~VLv~H~PP~g~---------g~~h-----~ 166 (224)
T cd07388 107 YLVAGVGGEI-ADE-----GEPEEHEALRYPAWVAEYRLKALWELKDYRKVFLFHTPPYHK---------GLNE-----Q 166 (224)
T ss_pred eEEEEecCCc-CCC-----CCcCHHHHhhhhhhHHHHHHHHHHhCCCCCeEEEECCCCCCC---------CCCc-----c
Confidence 8899999653 222 12356662 55443 555545668899999984321 0111 1
Q ss_pred HHHHHHHHHHhhCCCCEEEEecCccC
Q 021086 221 ERDRLFQLIADSKRNGVFFISGDVHF 246 (317)
Q Consensus 221 er~~Ll~~l~~~~v~~vv~LSGDvH~ 246 (317)
.=+.+.++|++.+.+ ++++||+|.
T Consensus 167 GS~alr~~I~~~~P~--l~i~GHih~ 190 (224)
T cd07388 167 GSHEVAHLIKTHNPL--VVLVGGKGQ 190 (224)
T ss_pred CHHHHHHHHHHhCCC--EEEEcCCce
Confidence 225566788888766 889999993
No 31
>KOG3770 consensus Acid sphingomyelinase and PHM5 phosphate metabolism protein [Lipid transport and metabolism]
Probab=93.88 E-value=0.68 Score=47.19 Aligned_cols=99 Identities=17% Similarity=0.231 Sum_probs=57.4
Q ss_pred CCcEEEEEeCCCCceeEEEEecCCCCCCCCC--CCCCCCcHHHHHHHHHHhcCC-CCCeEE-EEecceeecCCCCCCCCC
Q 021086 134 AGIYTSYTFGPVGRQIKIILLDTRYHRDPLS--SDGTILGSTQWTWLEKELNGP-SSAITI-IVSSIQVISNLSATTGPL 209 (317)
Q Consensus 134 ~~iY~s~~~G~~g~~v~~~~LDtR~~R~~~~--~~~~~LG~~Q~~WL~~~L~~s-~a~~kv-v~s~vp~~~~~~~~~~~~ 209 (317)
.+.|-....+. +++|.|++-+--.++. .....--..|.+||..+|..+ .+.=+| |+.|+| | |
T Consensus 305 ga~Y~~~~~~G----lr~IslNt~~c~~~N~~L~~n~tdp~~~lqWf~~~L~~ae~~GekVhil~HIP--p------G-- 370 (577)
T KOG3770|consen 305 GAYYLVLVIDG----LRLISLNTNYCSAPNFWLYANQTDPIDQLQWFVDQLQEAESAGEKVHILGHIP--P------G-- 370 (577)
T ss_pred CcEEEEeecCC----ceEEEeccccccccceeeeecCCCchHHhhHHHHHHHHHHhcCCEEEEEEeeC--C------C--
Confidence 45555555543 9999999985322110 011222366799999999654 345555 677776 1 1
Q ss_pred ccCCccCCCHHHHHHHHHHHHhhCCCCEEEEecCccCccce
Q 021086 210 FYMESWGRFPKERDRLFQLIADSKRNGVFFISGDVHFGEIT 250 (317)
Q Consensus 210 ~~~d~W~~~~~er~~Ll~~l~~~~v~~vv~LSGDvH~~~~~ 250 (317)
..+-|.++..++-+++.-.++- +. -.+.||.|.-+..
T Consensus 371 -~~~c~~~ws~~f~~iv~r~~~t-I~--gqf~GH~h~d~f~ 407 (577)
T KOG3770|consen 371 -DGVCLEGWSINFYRIVNRFRST-IA--GQFYGHTHIDEFR 407 (577)
T ss_pred -CcchhhhhhHHHHHHHHHHHHh-hh--hhccccCcceeEE
Confidence 1334444456666666555542 22 1378999987633
No 32
>cd00838 MPP_superfamily metallophosphatase superfamily, metallophosphatase domain. Metallophosphatases (MPPs), also known as metallophosphoesterases, phosphodiesterases (PDEs), binuclear metallophosphoesterases, and dimetal-containing phosphoesterases (DMPs), represent a diverse superfamily of enzymes with a conserved domain containing an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. This superfamily includes: the phosphoprotein phosphatases (PPPs), Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive me
Probab=91.68 E-value=3.5 Score=31.90 Aligned_cols=50 Identities=18% Similarity=0.197 Sum_probs=32.2
Q ss_pred EEEecceeecCCCCCCCCCccCCccCCCHHHHHHHHHHHHhhCCCCEEEEecCccCcccee
Q 021086 191 IIVSSIQVISNLSATTGPLFYMESWGRFPKERDRLFQLIADSKRNGVFFISGDVHFGEITR 251 (317)
Q Consensus 191 vv~s~vp~~~~~~~~~~~~~~~d~W~~~~~er~~Ll~~l~~~~v~~vv~LSGDvH~~~~~~ 251 (317)
|+++|.|..+... ...+.. ...+..+..++...++. ++++||.|......
T Consensus 70 i~~~H~~~~~~~~--------~~~~~~-~~~~~~~~~~~~~~~~~--~~~~GH~H~~~~~~ 119 (131)
T cd00838 70 ILLTHGPPYDPLD--------ELSPDE-DPGSEALLELLEKYGVD--LVLSGHTHVYERRE 119 (131)
T ss_pred EEEeccCCCCCch--------hhcccc-hhhHHHHHHHHHHhCCC--EEEeCCeecccccc
Confidence 8889988644321 011111 11567777777777765 78999999998765
No 33
>cd08166 MPP_Cdc1_like_1 uncharacterized subgroup related to Saccharomyces cerevisiae CDC1, metallophosphatase domain. A functionally uncharacterized subgroup related to the metallophosphatase domain of Saccharomyces cerevisiae Cdc1, S. cerevisiae Ted1 and human MPPE1. Cdc1 is an endoplasmic reticulum-localized transmembrane lipid phosphatase and is a subunit of DNA polymerase delta. TED1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), acts together with Emp24p and Erv25p in cargo exit from the ER. The MPPE1 gene is a candidate susceptibility gene for Bipolar disorder. Proteins in this uncharacterized subgroup belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like R
Probab=91.43 E-value=5.7 Score=35.24 Aligned_cols=43 Identities=21% Similarity=0.354 Sum_probs=30.0
Q ss_pred EEEecceeecCCCCCCCCCccCCccCCCHHHHHHHHHHHHhhCCCCEEEEecCccCccceeecc
Q 021086 191 IIVSSIQVISNLSATTGPLFYMESWGRFPKERDRLFQLIADSKRNGVFFISGDVHFGEITRYDC 254 (317)
Q Consensus 191 vv~s~vp~~~~~~~~~~~~~~~d~W~~~~~er~~Ll~~l~~~~v~~vv~LSGDvH~~~~~~~~~ 254 (317)
|+.||+|++... + ..+...+.+..+. +++|||.|.+.+...+.
T Consensus 112 i~lsH~P~~~~~----------~---------~~~~~~~~~~~p~--~Ifs~H~H~s~~~~~~~ 154 (195)
T cd08166 112 IMLSHVPLLAEG----------G---------QALKHVVTDLDPD--LIFSAHRHKSSIFMYDR 154 (195)
T ss_pred eeeecccccccc----------c---------HHHHHHHHhcCce--EEEEcCccceeeEEeec
Confidence 999999975321 0 1444555665554 89999999998887664
No 34
>cd07404 MPP_MS158 Microscilla MS158 and related proteins, metallophosphatase domain. MS158 is an uncharacterized Microscilla protein with a metallophosphatase domain. Microscilla proteins MS152, and MS153 are also included in this family. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is t
Probab=91.35 E-value=0.38 Score=40.72 Aligned_cols=70 Identities=17% Similarity=0.087 Sum_probs=44.0
Q ss_pred CcHHHHHHHHHHhcCCCCCeEEEEecceeecCCCCCCCCCccCCccCCC-HHHHHHHHHHHHhhCCCCEEEEecCccCcc
Q 021086 170 LGSTQWTWLEKELNGPSSAITIIVSSIQVISNLSATTGPLFYMESWGRF-PKERDRLFQLIADSKRNGVFFISGDVHFGE 248 (317)
Q Consensus 170 LG~~Q~~WL~~~L~~s~a~~kvv~s~vp~~~~~~~~~~~~~~~d~W~~~-~~er~~Ll~~l~~~~v~~vv~LSGDvH~~~ 248 (317)
.++++.+|+.+.+. +.+||++|.|.++.... ..+.-... ...++.|.+++++.+++ ++++||+|...
T Consensus 83 ~~~~~~~~~~~d~~----~~~vv~~HhpP~~~~~~------~~~~~~~~~~~~~~~l~~~~~~~~v~--~~i~GH~H~~~ 150 (166)
T cd07404 83 FGEAAARMRMNDFR----GKTVVVTHHAPSPLSLA------PQYGDSLVNAAFAVDLDDLILADPID--LWIHGHTHFNF 150 (166)
T ss_pred cchHHHHhCCCCCC----CCEEEEeCCCCCccccC------ccccCCCcchhhhhccHhHHhhcCCC--EEEECCccccc
Confidence 35566666665555 56899999986543210 11111111 24566788888887776 78999999986
Q ss_pred cee
Q 021086 249 ITR 251 (317)
Q Consensus 249 ~~~ 251 (317)
..+
T Consensus 151 ~~~ 153 (166)
T cd07404 151 DYR 153 (166)
T ss_pred eEE
Confidence 554
No 35
>cd07406 MPP_CG11883_N Drosophila melanogaster CG11883 and related proteins, N-terminal metallophosphatase domain. CG11883 is an uncharacterized Drosophila melanogaster UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at th
Probab=88.44 E-value=7.5 Score=35.60 Aligned_cols=87 Identities=13% Similarity=0.133 Sum_probs=49.4
Q ss_pred CcEEEEEeCCCCceeEEEEecCCCCCC--CC-CCCCCCCcH--HHHHHHHHHhcCCCCCeEEEEecceeecCCCCCCCCC
Q 021086 135 GIYTSYTFGPVGRQIKIILLDTRYHRD--PL-SSDGTILGS--TQWTWLEKELNGPSSAITIIVSSIQVISNLSATTGPL 209 (317)
Q Consensus 135 ~iY~s~~~G~~g~~v~~~~LDtR~~R~--~~-~~~~~~LG~--~Q~~WL~~~L~~s~a~~kvv~s~vp~~~~~~~~~~~~ 209 (317)
..|.-+..+ |.++.|+-+.+..... +. .+.-++... +-.+|++ .+.+..++..|+.+|.+.-
T Consensus 118 ~~~~i~~~~--g~kIgviG~~~~~~~~~~~~~~~~~~~~d~~~~~~~~v~-~~~~~~~D~iVvl~H~g~~---------- 184 (257)
T cd07406 118 KESAIIERA--GVKIGLLGLVEEEWLETLTIDPEYVRYRDYVETARELVD-ELREQGADLIIALTHMRLP---------- 184 (257)
T ss_pred CCeEEEEEC--CeEEEEEEEecccccccccCCCCcceEcCHHHHHHHHHH-HHHhCCCCEEEEEeccCch----------
Confidence 357777776 4578888887764321 11 111122222 2234553 4556678999999886530
Q ss_pred ccCCccCCCHHHHHHHHHHHHhhCCCCEEEEecCccCccc
Q 021086 210 FYMESWGRFPKERDRLFQLIADSKRNGVFFISGDVHFGEI 249 (317)
Q Consensus 210 ~~~d~W~~~~~er~~Ll~~l~~~~v~~vv~LSGDvH~~~~ 249 (317)
+-.+|.+.+ .+++ ++|+||.|....
T Consensus 185 -----------~d~~la~~~--~~iD--~IlgGH~H~~~~ 209 (257)
T cd07406 185 -----------NDKRLAREV--PEID--LILGGHDHEYIL 209 (257)
T ss_pred -----------hhHHHHHhC--CCCc--eEEecccceeEe
Confidence 112333333 4677 789999998763
No 36
>PF00149 Metallophos: Calcineurin-like phosphoesterase; InterPro: IPR004843 This domain is found in a diverse range of phosphoesterases [], including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases, as well as nucleases such as bacterial SbcD or yeast MRE11. The most conserved regions in this domain centre around the metal chelating residues.; GO: 0016787 hydrolase activity; PDB: 2IAE_C 3DW8_F 3FGA_C 2IE4_C 2NYM_C 2NYL_C 3K7V_C 2NPP_C 2IE3_C 3K7W_C ....
Probab=87.12 E-value=0.88 Score=36.46 Aligned_cols=41 Identities=22% Similarity=0.217 Sum_probs=27.4
Q ss_pred ceEEEEeeCCCCCCh-----hHHHH-HHhcCCCEEEEeccccccCCC
Q 021086 41 SRIAFGSCANQTAPQ-----PIWDA-IIKFDPQVFIWMGDNIYGDIK 81 (317)
Q Consensus 41 ~riAf~SC~~~~~~~-----~~~~~-ia~~~pD~~l~lGD~iY~d~~ 81 (317)
+||++.|.-...... ..... ..+.+||++|++||.++....
T Consensus 1 ~ri~~isD~H~~~~~~~~~~~~~~~~~~~~~~d~ii~~GD~~~~~~~ 47 (200)
T PF00149_consen 1 MRILVISDLHGGYDDDSDAFRKLDEIAAENKPDFIIFLGDLVDGGNP 47 (200)
T ss_dssp EEEEEEEBBTTTHHHHCHHHHHHHHHHHHTTTSEEEEESTSSSSSSH
T ss_pred CeEEEEcCCCCCCcchhHHHHHHHHHhccCCCCEEEeeccccccccc
Confidence 588998877754211 12222 334799999999999997643
No 37
>COG0622 Predicted phosphoesterase [General function prediction only]
Probab=78.79 E-value=3.1 Score=36.13 Aligned_cols=39 Identities=13% Similarity=-0.041 Sum_probs=28.9
Q ss_pred ceEEEEeeCCCCCC--hhHHHHHHhcCCCEEEEeccccccC
Q 021086 41 SRIAFGSCANQTAP--QPIWDAIIKFDPQVFIWMGDNIYGD 79 (317)
Q Consensus 41 ~riAf~SC~~~~~~--~~~~~~ia~~~pD~~l~lGD~iY~d 79 (317)
.+|.+.|+.+.+.. ..........++|+++|+||.+...
T Consensus 2 m~ilviSDtH~~~~~~~~~~~~~~~~~~d~vih~GD~~~~~ 42 (172)
T COG0622 2 MKILVISDTHGPLRAIEKALKIFNLEKVDAVIHAGDSTSPF 42 (172)
T ss_pred cEEEEEeccCCChhhhhHHHHHhhhcCCCEEEECCCcCCcc
Confidence 58899999886432 2344444558999999999999864
No 38
>PRK09453 phosphodiesterase; Provisional
Probab=76.54 E-value=3.2 Score=35.73 Aligned_cols=37 Identities=16% Similarity=0.398 Sum_probs=26.5
Q ss_pred ceEEEEeeCCCCCC--hhHHHHHHhcCCCEEEEeccccc
Q 021086 41 SRIAFGSCANQTAP--QPIWDAIIKFDPQVFIWMGDNIY 77 (317)
Q Consensus 41 ~riAf~SC~~~~~~--~~~~~~ia~~~pD~~l~lGD~iY 77 (317)
+||++.|..+-+.+ ..+.+.+.+.++|.++++||.+.
T Consensus 1 mri~viSD~Hg~~~~~~~~l~~~~~~~~d~ii~lGDi~~ 39 (182)
T PRK09453 1 MKLMFASDTHGSLPATEKALELFAQSGADWLVHLGDVLY 39 (182)
T ss_pred CeEEEEEeccCCHHHHHHHHHHHHhcCCCEEEEcccccc
Confidence 48999998874321 23444455679999999999875
No 39
>PRK11340 phosphodiesterase YaeI; Provisional
Probab=73.68 E-value=12 Score=34.55 Aligned_cols=39 Identities=18% Similarity=0.191 Sum_probs=27.7
Q ss_pred ccceEEEEeeCCCCC--Ch----hHHHHHHhcCCCEEEEeccccc
Q 021086 39 LVSRIAFGSCANQTA--PQ----PIWDAIIKFDPQVFIWMGDNIY 77 (317)
Q Consensus 39 ~~~riAf~SC~~~~~--~~----~~~~~ia~~~pD~~l~lGD~iY 77 (317)
+.+||++.|=-+... +. .+.+.+.+.+||+++.+||.+.
T Consensus 48 ~~~rI~~lSDlH~~~~~~~~~l~~~v~~i~~~~pDlVli~GD~~d 92 (271)
T PRK11340 48 APFKILFLADLHYSRFVPLSLISDAIALGIEQKPDLILLGGDYVL 92 (271)
T ss_pred CCcEEEEEcccCCCCcCCHHHHHHHHHHHHhcCCCEEEEccCcCC
Confidence 469999998655431 12 3444455689999999999886
No 40
>PF12850 Metallophos_2: Calcineurin-like phosphoesterase superfamily domain; InterPro: IPR024654 Domains in this entry are members of the calcineurin-like phosphoesterase domain superfamily [].; PDB: 2GJU_A 1Z2W_A 1Z2X_B 3PSO_B 3PSN_B 1W24_A 2R17_B 3QFN_B 3QFO_A 3QFM_A ....
Probab=72.86 E-value=3.3 Score=33.93 Aligned_cols=27 Identities=11% Similarity=0.352 Sum_probs=21.0
Q ss_pred HHHHHHHHhhCCCCEEEEecCccCcccee
Q 021086 223 DRLFQLIADSKRNGVFFISGDVHFGEITR 251 (317)
Q Consensus 223 ~~Ll~~l~~~~v~~vv~LSGDvH~~~~~~ 251 (317)
+.+.+.+...+++ ++++||.|.....+
T Consensus 99 ~~~~~~~~~~~~~--~~~~GH~H~~~~~~ 125 (156)
T PF12850_consen 99 AELREILSRENVD--LVLHGHTHRPQVFK 125 (156)
T ss_dssp HHHHHHHHHTTSS--EEEESSSSSEEEEE
T ss_pred hhhhhhhcccCCC--EEEcCCcccceEEE
Confidence 3556677777777 88999999988765
No 41
>TIGR00040 yfcE phosphoesterase, MJ0936 family. Members of this largely uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11, and a family of uncharacterized archaeal putative phosphoesterases described by TIGR00024. In this family, the His residue in GNHD portion of the motif is not conserved. The member MJ0936, one of two from Methanococcus jannaschii, was shown (PubMed:15128743) to act on model phosphodiesterase substrates; a divalent cation was required.
Probab=69.81 E-value=7.6 Score=32.48 Aligned_cols=36 Identities=14% Similarity=-0.008 Sum_probs=24.3
Q ss_pred ceEEEEeeCCCCCC--hhHHHHHHhc-CCCEEEEecccc
Q 021086 41 SRIAFGSCANQTAP--QPIWDAIIKF-DPQVFIWMGDNI 76 (317)
Q Consensus 41 ~riAf~SC~~~~~~--~~~~~~ia~~-~pD~~l~lGD~i 76 (317)
+||++.|-.+-+.. ..+.+.+... ++|.++++||.+
T Consensus 1 m~i~viSD~H~~~~~~~~~~~~~~~~~~~d~ii~~GD~~ 39 (158)
T TIGR00040 1 MKILVISDTHGPLRATELPVELFNLESNVDLVIHAGDLT 39 (158)
T ss_pred CEEEEEecccCCcchhHhHHHHHhhccCCCEEEEcCCCC
Confidence 47888888764321 2233444455 899999999977
No 42
>cd00841 MPP_YfcE Escherichia coli YfcE and related proteins, metallophosphatase domain. YfcE is a manganase-dependent metallophosphatase, found in bacteria and archaea, that cleaves bis-p-nitrophenyl phosphate, thymidine 5'-monophosphate-p-nitrophenyl ester, and p-nitrophenyl phosphorylcholine, but is unable to hydrolyze 2',3 ' or 3',5' cyclic nucleic phosphodiesters, and various phosphomonoesters, including p-nitrophenyl phosphate. This family also includes the Bacilus subtilis YsnB and Methanococcus jannaschii MJ0936 proteins. This domain family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid ph
Probab=61.97 E-value=13 Score=30.64 Aligned_cols=35 Identities=20% Similarity=0.338 Sum_probs=21.8
Q ss_pred eEEEEeeCCCCCChhHHHHHHh--cCCCEEEEecccccc
Q 021086 42 RIAFGSCANQTAPQPIWDAIIK--FDPQVFIWMGDNIYG 78 (317)
Q Consensus 42 riAf~SC~~~~~~~~~~~~ia~--~~pD~~l~lGD~iY~ 78 (317)
||++.| +.++....+..+.+ .++|.++++||.+..
T Consensus 1 ~i~~is--D~H~~~~~~~~~~~~~~~~d~ii~~GD~~~~ 37 (155)
T cd00841 1 KIGVIS--DTHGSLELLEKALELFGDVDLIIHAGDVLYP 37 (155)
T ss_pred CEEEEe--cCCCCHHHHHHHHHHhcCCCEEEECCccccc
Confidence 456665 43344445555443 249999999997654
No 43
>cd07394 MPP_Vps29 Homo sapiens Vps29 and related proteins, metallophosphatase domain. Vps29 (vacuolar sorting protein 29), also known as vacuolar membrane protein Pep11, is a subunit of the retromer complex which is responsible for the retrieval of mannose-6-phosphate receptors (MPRs) from the endosomes for retrograde transport back to the Golgi. Vps29 has a phosphoesterase fold that acts as a protein interaction scaffold for retromer complex assembly as well as a phosphatase with specificity for the cytoplasmic tail of the MPR. The retromer includes the following 5 subunits: Vps35, Vps26, Vps29, and a dimer of the sorting nexins Vps5 (Snx1), and Vps17 (Snx2). Vps29 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily incl
Probab=59.94 E-value=13 Score=32.21 Aligned_cols=36 Identities=6% Similarity=-0.091 Sum_probs=23.3
Q ss_pred eEEEEeeCCCC---CC--hhHHHHHHhcCCCEEEEeccccc
Q 021086 42 RIAFGSCANQT---AP--QPIWDAIIKFDPQVFIWMGDNIY 77 (317)
Q Consensus 42 riAf~SC~~~~---~~--~~~~~~ia~~~pD~~l~lGD~iY 77 (317)
+|++.|=.+-. .. ..+.+.+.+.++|.++|+||.++
T Consensus 1 ~i~viSDtHl~~~~~~~~~~~~~~~~~~~~d~iih~GDi~~ 41 (178)
T cd07394 1 LVLVIGDLHIPHRASDLPAKFKKLLVPGKIQHVLCTGNLCS 41 (178)
T ss_pred CEEEEEecCCCCCchhhHHHHHHHhccCCCCEEEECCCCCC
Confidence 46777766621 11 13444444468999999999976
No 44
>cd07379 MPP_239FB Homo sapiens 239FB and related proteins, metallophosphatase domain. 239FB (Fetal brain protein 239) is thought to play a role in central nervous system development, but its specific role in unknown. 239FB is expressed predominantly in human fetal brain from a gene located in the chromosome 11p13 region associated with the mental retardation component of the WAGR (Wilms tumor, Aniridia, Genitourinary anomalies, Mental retardation) syndrome. Orthologous brp-like (brain protein 239-like) proteins have been identified in the invertebrate amphioxus group and in vertebrates. 239FB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzyme
Probab=58.40 E-value=19 Score=29.10 Aligned_cols=53 Identities=15% Similarity=0.155 Sum_probs=31.2
Q ss_pred CCeEEEEecceeecCCCCCCCCCccCCccCCCHHHHHHHHHHHHhhCCCCEEEEecCccCccce
Q 021086 187 SAITIIVSSIQVISNLSATTGPLFYMESWGRFPKERDRLFQLIADSKRNGVFFISGDVHFGEIT 250 (317)
Q Consensus 187 a~~kvv~s~vp~~~~~~~~~~~~~~~d~W~~~~~er~~Ll~~l~~~~v~~vv~LSGDvH~~~~~ 250 (317)
...+|+++|.|..+.. ...+.+. ...-+.+.+++++.+++ ++++||+|.....
T Consensus 67 ~~~~ilv~H~~p~~~~-------~~~~~~~--~~g~~~~~~~~~~~~~~--~~i~GH~H~~~~~ 119 (135)
T cd07379 67 EDTDILVTHGPPYGHL-------DLVSSGQ--RVGCEELLNRVQRVRPK--LHVFGHIHEGYGA 119 (135)
T ss_pred CCCEEEEECCCCCcCc-------cccccCc--ccCCHHHHHHHHHHCCc--EEEEcCcCCcCce
Confidence 5678888887753311 0111111 11224556666776665 8999999998633
No 45
>cd08165 MPP_MPPE1 human MPPE1 and related proteins, metallophosphatase domain. MPPE1 is a functionally uncharacterized metallophosphatase domain-containing protein. The MPPE1 gene is located on chromosome 18 and is a candidate susceptibility gene for Bipolar disorder. MPPE1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to
Probab=58.14 E-value=13 Score=31.35 Aligned_cols=35 Identities=14% Similarity=0.060 Sum_probs=24.4
Q ss_pred HHhhCCCCEEEEecCccCccceeeccCCCcceEEEcCCCcc
Q 021086 229 IADSKRNGVFFISGDVHFGEITRYDCDVGYALYDITSSGLT 269 (317)
Q Consensus 229 l~~~~v~~vv~LSGDvH~~~~~~~~~~~~~~~~eiTSSgl~ 269 (317)
+.+.++. ++||||.|-....+.. -.+.|+|.++|+
T Consensus 118 ~~~~~~~--~~l~GH~H~~~~~~~~----~~~~e~~~~~~~ 152 (156)
T cd08165 118 LQWLKPR--LVLSGHTHSFCEVTHP----DGTPEVTVPSFS 152 (156)
T ss_pred HHhhCCC--EEEEcccCCCceeEEE----CCEEEEEEecce
Confidence 3344444 7899999997555433 358899988876
No 46
>cd08164 MPP_Ted1 Saccharomyces cerevisiae Ted1 and related proteins, metallophosphatase domain. Saccharomyces cerevisiae Ted1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1) is a metallophosphatase domain-containing protein which acts together with Emp24p and Erv25p in cargo exit from the ER. Ted1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the
Probab=57.23 E-value=19 Score=31.87 Aligned_cols=21 Identities=19% Similarity=0.338 Sum_probs=18.8
Q ss_pred hHHHHHHh-cCCCEEEEecccc
Q 021086 56 PIWDAIIK-FDPQVFIWMGDNI 76 (317)
Q Consensus 56 ~~~~~ia~-~~pD~~l~lGD~i 76 (317)
.+|+.|.. .+||.+++|||-+
T Consensus 34 ~~~~~~~~~l~Pd~V~fLGDLf 55 (193)
T cd08164 34 HIVSMMQFWLKPDAVVVLGDLF 55 (193)
T ss_pred HHHHHHHHhcCCCEEEEecccc
Confidence 68888876 7999999999999
No 47
>cd07403 MPP_TTHA0053 Thermus thermophilus TTHA0053 and related proteins, metallophosphatase domain. TTHA0053 is an uncharacterized Thermus thermophilus protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=56.87 E-value=13 Score=30.14 Aligned_cols=51 Identities=14% Similarity=0.212 Sum_probs=33.4
Q ss_pred eEEEEecceeecCCCCCCCCCccCCccCCCHHHHHHHHHHHHhhCCCCEEEEecCccCcccee
Q 021086 189 ITIIVSSIQVISNLSATTGPLFYMESWGRFPKERDRLFQLIADSKRNGVFFISGDVHFGEITR 251 (317)
Q Consensus 189 ~kvv~s~vp~~~~~~~~~~~~~~~d~W~~~~~er~~Ll~~l~~~~v~~vv~LSGDvH~~~~~~ 251 (317)
.+|+++|.|..+.. ..+.. .....+.+.+++.+.+++ ++|+||+|......
T Consensus 57 ~~Ilv~H~pp~~~~--------~~~~~--~~~g~~~l~~~l~~~~~~--~vl~GH~H~~~~~~ 107 (129)
T cd07403 57 VDILLTHAPPAGIG--------DGEDF--AHRGFEAFLDFIDRFRPK--LFIHGHTHLNYGYQ 107 (129)
T ss_pred cCEEEECCCCCcCc--------Ccccc--cccCHHHHHHHHHHHCCc--EEEEcCcCCCcCcc
Confidence 67899998754321 01111 112456778888888776 89999999886654
No 48
>cd07407 MPP_YHR202W_N Saccharomyces cerevisiae YHR202W and related proteins, N-terminal metallophosphatase domain. YHR202W is an uncharacterized Saccharomyces cerevisiae UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at
Probab=51.60 E-value=43 Score=31.25 Aligned_cols=91 Identities=15% Similarity=0.294 Sum_probs=49.1
Q ss_pred EEEEEeCCCCceeEEEEecCCCCCCCCCCCCCC---CcHHHHHHHHHHhcCCCCCeEEEEecceeecCCCCCCCCCccCC
Q 021086 137 YTSYTFGPVGRQIKIILLDTRYHRDPLSSDGTI---LGSTQWTWLEKELNGPSSAITIIVSSIQVISNLSATTGPLFYME 213 (317)
Q Consensus 137 Y~s~~~G~~g~~v~~~~LDtR~~R~~~~~~~~~---LG~~Q~~WL~~~L~~s~a~~kvv~s~vp~~~~~~~~~~~~~~~d 213 (317)
|.-+..+. |.++.||-+=+-. .+....-++ +-..|.+|+.+.|++..++..|+.+|.-+ ..|
T Consensus 138 y~i~~~~~-G~kIgiiGltt~~--~~~~~~~~f~d~~~~~~~~~v~~~l~~~~~DvIIvlsH~G~------------~~d 202 (282)
T cd07407 138 YRKFTTKH-GLRVLAFGFLFDF--KGAANGVTVQPVADVVQEPWFQDAINNEDVDLILVLGHMPV------------RDD 202 (282)
T ss_pred eEEEEcCC-CcEEEEEEEeccc--ccCCCCcEEcCHHHHHHHHHHHHHHHhcCCCEEEEEeCCCC------------CCC
Confidence 55555542 4467777774432 111112222 23355568888887667899999998653 112
Q ss_pred ccCCCHHHHHHHHHHHHhh--CCCCEEEEecCccCccc
Q 021086 214 SWGRFPKERDRLFQLIADS--KRNGVFFISGDVHFGEI 249 (317)
Q Consensus 214 ~W~~~~~er~~Ll~~l~~~--~v~~vv~LSGDvH~~~~ 249 (317)
. +-.++.+.|.+. ++ ..++|+||.|....
T Consensus 203 --~----~~~~~~~~la~~~~~i-d~~Ii~GHsH~~~~ 233 (282)
T cd07407 203 --A----EFKVLHDAIRKIFPDT-PIQFLGGHSHVRDF 233 (282)
T ss_pred --c----cHHHHHHHHHHhCCCC-CEEEEeCCcccccc
Confidence 0 111122334443 22 23689999997543
No 49
>cd08164 MPP_Ted1 Saccharomyces cerevisiae Ted1 and related proteins, metallophosphatase domain. Saccharomyces cerevisiae Ted1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1) is a metallophosphatase domain-containing protein which acts together with Emp24p and Erv25p in cargo exit from the ER. Ted1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the
Probab=51.06 E-value=13 Score=32.95 Aligned_cols=16 Identities=19% Similarity=0.210 Sum_probs=14.3
Q ss_pred EEEecCccCccceeec
Q 021086 238 FFISGDVHFGEITRYD 253 (317)
Q Consensus 238 v~LSGDvH~~~~~~~~ 253 (317)
++||||.|-+.+...+
T Consensus 147 l~lSGHtHgGqi~~~~ 162 (193)
T cd08164 147 LILTGHDHEGCDYQHP 162 (193)
T ss_pred EEEeCccCCCeEEEec
Confidence 8999999999988765
No 50
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal
Probab=45.60 E-value=2.2e+02 Score=25.33 Aligned_cols=95 Identities=15% Similarity=0.172 Sum_probs=51.2
Q ss_pred EEEEEeCCCCceeEEEEecCCCCCCCCCCCC-----CCCcHH-HHHHHHHHhcCCCCCeEEEEecceeecCCCCCCCCCc
Q 021086 137 YTSYTFGPVGRQIKIILLDTRYHRDPLSSDG-----TILGST-QWTWLEKELNGPSSAITIIVSSIQVISNLSATTGPLF 210 (317)
Q Consensus 137 Y~s~~~G~~g~~v~~~~LDtR~~R~~~~~~~-----~~LG~~-Q~~WL~~~L~~s~a~~kvv~s~vp~~~~~~~~~~~~~ 210 (317)
|.-+..+ |.++.|+-+-+........+.. .....+ -.++++ +|++. +++.|+..|.-.
T Consensus 123 ~~i~~~~--g~kVg~ig~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~lr~~-~D~vIv~~H~G~------------ 186 (239)
T cd07381 123 PAILEVN--GIKVAFLAYTYGTNGIPLAAGARPGGVNPLDLERIAADIA-EAKKK-ADIVIVSLHWGV------------ 186 (239)
T ss_pred cEEEEEC--CEEEEEEEEECCCCCCcCcccCCccccCccCHHHHHHHHH-HHhhc-CCEEEEEecCcc------------
Confidence 4444554 3457777776554332211111 111222 233433 55544 888888777321
Q ss_pred cCCccCCCH-HHHHHHHHHHHhhCCCCEEEEecCccCccceee
Q 021086 211 YMESWGRFP-KERDRLFQLIADSKRNGVFFISGDVHFGEITRY 252 (317)
Q Consensus 211 ~~d~W~~~~-~er~~Ll~~l~~~~v~~vv~LSGDvH~~~~~~~ 252 (317)
.+...| .++.++.+.+.+.+++ ++++||-|..+-.++
T Consensus 187 ---e~~~~p~~~~~~la~~l~~~G~D--~IiG~H~Hv~q~~E~ 224 (239)
T cd07381 187 ---EYSYYPTPEQRELARALIDAGAD--LVIGHHPHVLQGIEI 224 (239)
T ss_pred ---cCCCCCCHHHHHHHHHHHHCCCC--EEEcCCCCcCCCeEE
Confidence 111223 3456677777778888 889999998765543
No 51
>cd07397 MPP_DevT Myxococcus xanthus DevT and related proteins, metallophosphatase domain. DevT is a component in the C-signal response pathway in Myxococcus xanthus that stimulates the developmentally regulated expression of the FruA response regulator protein and is required for methylation of FrzCD during fruiting body formation. DevT mutants having an in-frame deletion in the devT gene, display delayed aggregation and a cell autonomous sporulation defect. DevT belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomy
Probab=45.55 E-value=32 Score=31.47 Aligned_cols=37 Identities=19% Similarity=0.157 Sum_probs=22.8
Q ss_pred ceEEEEeeCCCCCChhHHHHHHhcCCCEEEEeccccc
Q 021086 41 SRIAFGSCANQTAPQPIWDAIIKFDPQVFIWMGDNIY 77 (317)
Q Consensus 41 ~riAf~SC~~~~~~~~~~~~ia~~~pD~~l~lGD~iY 77 (317)
+||++.|=-+-......-+.+.+.+||+++.+||.+-
T Consensus 1 ~rIa~isDiHg~~~~~~~~~l~~~~pD~Vl~~GDi~~ 37 (238)
T cd07397 1 LRIAIVGDVHGQWDLEDIKALHLLQPDLVLFVGDFGN 37 (238)
T ss_pred CEEEEEecCCCCchHHHHHHHhccCCCEEEECCCCCc
Confidence 5788876333111111223455679999999999863
No 52
>cd07384 MPP_Cdc1_like Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. This group also contains Saccharomyces cerevisiae TED1 (Trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), which acts together wit
Probab=45.29 E-value=26 Score=30.05 Aligned_cols=40 Identities=20% Similarity=0.161 Sum_probs=26.1
Q ss_pred HHHhhCCCCEEEEecCccCccceeeccCCCcceEEEcCCCccc
Q 021086 228 LIADSKRNGVFFISGDVHFGEITRYDCDVGYALYDITSSGLTQ 270 (317)
Q Consensus 228 ~l~~~~v~~vv~LSGDvH~~~~~~~~~~~~~~~~eiTSSgl~~ 270 (317)
++.+.++ .++||||.|-........ ..-.+.|+|.++++.
T Consensus 129 ~~~~~~~--~~~lsGH~H~~~~~~~~~-~~~~~~ei~v~S~s~ 168 (171)
T cd07384 129 LLDTIKP--VLILSGHDHDQCEVVHSS-KAGSVREITVKSFSW 168 (171)
T ss_pred HHhccCc--eEEEeCcccCCeEEEecC-CCCCceEEeeccchh
Confidence 3444444 389999999996554432 234588888776654
No 53
>cd07410 MPP_CpdB_N Escherichia coli CpdB and related proteins, N-terminal metallophosphatase domain. CpdB is a bacterial periplasmic protein with an N-terminal metallophosphatase domain and a C-terminal 3'-nucleotidase domain. This alignment model represents the N-terminal metallophosphatase domain, which has 2',3'-cyclic phosphodiesterase activity, hydrolyzing the 2',3'-cyclic phosphates of adenosine, guanosine, cytosine and uridine to yield nucleoside and phosphate. CpdB also hydrolyzes the chromogenic substrates p-nitrophenyl phosphate (PNPP), bis(PNPP) and p-nitrophenyl phosphorylcholine (NPPC). CpdB is thought to play a scavenging role during RNA hydrolysis by converting the non-transportable nucleotides produced by RNaseI to nucleosides which can easily enter a cell for use as a carbon source. This family also includes YfkN, a Bacillus subtilis nucleotide phosphoesterase with two copies of each of the metallophosphatase and 3'-nucleotidase domains. The N-terminal metallophos
Probab=42.81 E-value=47 Score=30.49 Aligned_cols=98 Identities=12% Similarity=0.082 Sum_probs=49.8
Q ss_pred cEEEEEeCCCCceeEEEEecCCCCCCCCC----CCCCCCcHH-HHHHHHHHhcCCCCCeEEEEecceeecCCCCCCCCCc
Q 021086 136 IYTSYTFGPVGRQIKIILLDTRYHRDPLS----SDGTILGST-QWTWLEKELNGPSSAITIIVSSIQVISNLSATTGPLF 210 (317)
Q Consensus 136 iY~s~~~G~~g~~v~~~~LDtR~~R~~~~----~~~~~LG~~-Q~~WL~~~L~~s~a~~kvv~s~vp~~~~~~~~~~~~~ 210 (317)
.|.-+..+. |.++.|+-+=+........ +.-.+.... ..++..++|++..++..|+.+|..+-.+.
T Consensus 129 ~~~i~~~~~-g~kVgviG~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~v~~lr~~~~D~IIvl~H~g~~~~~-------- 199 (277)
T cd07410 129 PYVILERDV-GVKVGIIGLTTPQIPNWEKPNLIGGLKFTDPVETAKKYVPKLRAEGADVVVVLAHGGFERDL-------- 199 (277)
T ss_pred CEEEEEecC-CCEEEEEecCCcccccccCcccCCCcEEcCHHHHHHHHHHHHHHcCCCEEEEEecCCcCCCc--------
Confidence 455556651 3467777764432221100 112223332 34566667776678888999987642110
Q ss_pred cCCccCCCHHHHHHHHHHHHh-hCCCCEEEEecCccCccc
Q 021086 211 YMESWGRFPKERDRLFQLIAD-SKRNGVFFISGDVHFGEI 249 (317)
Q Consensus 211 ~~d~W~~~~~er~~Ll~~l~~-~~v~~vv~LSGDvH~~~~ 249 (317)
+ ..+..++...++.++ .+++ ++|+||.|....
T Consensus 200 --~---~~~~~~~~~~~la~~~~~vD--~IlgGHsH~~~~ 232 (277)
T cd07410 200 --E---ESLTGENAAYELAEEVPGID--AILTGHQHRRFP 232 (277)
T ss_pred --c---cccCCccHHHHHHhcCCCCc--EEEeCCCccccc
Confidence 0 001111222233333 4676 789999998654
No 54
>PF13956 Ibs_toxin: Toxin Ibs, type I toxin-antitoxin system
Probab=42.07 E-value=17 Score=19.58 Aligned_cols=13 Identities=38% Similarity=0.444 Sum_probs=10.4
Q ss_pred HHHHHHhhhhhhh
Q 021086 12 VFILGALIGSQFA 24 (317)
Q Consensus 12 ~~~~~~~~~~~~~ 24 (317)
|+|++++|.++|.
T Consensus 5 vIIlvvLLliSf~ 17 (19)
T PF13956_consen 5 VIILVVLLLISFP 17 (19)
T ss_pred hHHHHHHHhcccc
Confidence 6788888888875
No 55
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=39.97 E-value=1.7e+02 Score=26.23 Aligned_cols=57 Identities=16% Similarity=0.185 Sum_probs=35.7
Q ss_pred HHHHHHhcCCCCCeEEEEecceeecCCCCCCCCCccCCccCCCH-HHHHHHHHHHHhhCCCCEEEEecCccCcccee
Q 021086 176 TWLEKELNGPSSAITIIVSSIQVISNLSATTGPLFYMESWGRFP-KERDRLFQLIADSKRNGVFFISGDVHFGEITR 251 (317)
Q Consensus 176 ~WL~~~L~~s~a~~kvv~s~vp~~~~~~~~~~~~~~~d~W~~~~-~er~~Ll~~l~~~~v~~vv~LSGDvH~~~~~~ 251 (317)
+++ ++|++ ++++.|+.+|.-. | ....| .++.++.+.|.+.+++ ++++||-|...-.+
T Consensus 164 ~~i-~~lr~-~~D~vIv~~H~G~--------------e-~~~~p~~~~~~~A~~l~~~G~D--vIiG~H~H~~~~~e 221 (239)
T smart00854 164 ADI-ARARK-KADVVIVSLHWGV--------------E-YQYEPTDEQRELAHALIDAGAD--VVIGHHPHVLQPIE 221 (239)
T ss_pred HHH-HHHhc-cCCEEEEEecCcc--------------c-cCCCCCHHHHHHHHHHHHcCCC--EEEcCCCCcCCceE
Confidence 444 45665 5888888776321 1 11122 3445676777677888 88999999876544
No 56
>TIGR00583 mre11 DNA repair protein (mre11). All proteins in this family for which functions are known are subunits of a nuclease complex made up of multiple proteins including MRE11 and RAD50 homologs. The functions of this nuclease complex include recombinational repair and non-homolgous end joining. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The proteins in this family are distantly related to proteins in the SbcCD complex of bacteria.
Probab=39.44 E-value=43 Score=33.11 Aligned_cols=41 Identities=15% Similarity=0.215 Sum_probs=28.0
Q ss_pred ccceEEEEeeCCCC----CC------hhHHHHHH----hcCCCEEEEeccccccC
Q 021086 39 LVSRIAFGSCANQT----AP------QPIWDAII----KFDPQVFIWMGDNIYGD 79 (317)
Q Consensus 39 ~~~riAf~SC~~~~----~~------~~~~~~ia----~~~pD~~l~lGD~iY~d 79 (317)
+.+||.+.|..+.. .+ ...++.|. ++++|++|+.||-+=..
T Consensus 2 ~~mKIlh~SD~HlG~~~~~~~r~~D~~~~f~eil~~a~~~~vD~VLiaGDLFd~~ 56 (405)
T TIGR00583 2 DTIRILVSTDNHVGYGENDPVRGDDSWNTFEEVLQIAKEQDVDMILLGGDLFHEN 56 (405)
T ss_pred CceEEEEEcCCCCCCccCCchhhhhHHHHHHHHHHHHHHcCCCEEEECCccCCCC
Confidence 35899999887743 11 23455543 47999999999976543
No 57
>PF12850 Metallophos_2: Calcineurin-like phosphoesterase superfamily domain; InterPro: IPR024654 Domains in this entry are members of the calcineurin-like phosphoesterase domain superfamily [].; PDB: 2GJU_A 1Z2W_A 1Z2X_B 3PSO_B 3PSN_B 1W24_A 2R17_B 3QFN_B 3QFO_A 3QFM_A ....
Probab=38.19 E-value=67 Score=25.94 Aligned_cols=34 Identities=24% Similarity=0.296 Sum_probs=20.8
Q ss_pred ceEEEEeeCCCCC--ChhHHHHHHhcCCCEEEEecccc
Q 021086 41 SRIAFGSCANQTA--PQPIWDAIIKFDPQVFIWMGDNI 76 (317)
Q Consensus 41 ~riAf~SC~~~~~--~~~~~~~ia~~~pD~~l~lGD~i 76 (317)
+||++.|..+.+. ...+++.+ .+||+++++||.+
T Consensus 1 Mki~~~sD~H~~~~~~~~~~~~~--~~~d~vi~~GDi~ 36 (156)
T PF12850_consen 1 MKIAVISDLHGNLDALEAVLEYI--NEPDFVIILGDIF 36 (156)
T ss_dssp EEEEEEE--TTTHHHHHHHHHHH--TTESEEEEES-SC
T ss_pred CEEEEEeCCCCChhHHHHHHHHh--cCCCEEEECCCch
Confidence 5889988777531 12344444 5799999999943
No 58
>cd07384 MPP_Cdc1_like Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. This group also contains Saccharomyces cerevisiae TED1 (Trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), which acts together wit
Probab=37.76 E-value=30 Score=29.65 Aligned_cols=18 Identities=28% Similarity=0.748 Sum_probs=15.0
Q ss_pred HHhcCCCEEEEecccccc
Q 021086 61 IIKFDPQVFIWMGDNIYG 78 (317)
Q Consensus 61 ia~~~pD~~l~lGD~iY~ 78 (317)
+.+.+||+++++||.+..
T Consensus 41 i~~~~pd~vi~lGDl~d~ 58 (171)
T cd07384 41 LQRLKPDVVLFLGDLFDG 58 (171)
T ss_pred HHhcCCCEEEEeccccCC
Confidence 445899999999998864
No 59
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=37.06 E-value=1.8e+02 Score=26.16 Aligned_cols=60 Identities=12% Similarity=0.238 Sum_probs=38.0
Q ss_pred HHHHHHhcC--CCCCeEEEEecceeecCCCCCCCCCccCCccCCCH-HHHHHHHHHHHhhCCCCEEEEecCccCccceee
Q 021086 176 TWLEKELNG--PSSAITIIVSSIQVISNLSATTGPLFYMESWGRFP-KERDRLFQLIADSKRNGVFFISGDVHFGEITRY 252 (317)
Q Consensus 176 ~WL~~~L~~--s~a~~kvv~s~vp~~~~~~~~~~~~~~~d~W~~~~-~er~~Ll~~l~~~~v~~vv~LSGDvH~~~~~~~ 252 (317)
+.+++.+++ ..+++.||..|- . ..|..+| .+++++.+.+-+.|++ +++.+|-|..+-.++
T Consensus 171 ~~i~~~i~~~r~~~D~vIv~~Hw--------------G-~e~~~~p~~~q~~~a~~lidaGaD--iIiG~HpHv~q~~E~ 233 (250)
T PF09587_consen 171 ERIKEDIREARKKADVVIVSLHW--------------G-IEYENYPTPEQRELARALIDAGAD--IIIGHHPHVIQPVEI 233 (250)
T ss_pred HHHHHHHHHHhcCCCEEEEEecc--------------C-CCCCCCCCHHHHHHHHHHHHcCCC--EEEeCCCCcccceEE
Confidence 444444432 357777776552 1 1223333 4566777888888988 899999999876653
No 60
>TIGR03729 acc_ester putative phosphoesterase. Members of this protein family belong to the larger family pfam00149 (calcineurin-like phosphoesterase), a family largely defined by small motifs of metal-chelating residues. The subfamily in this model shows a good but imperfect co-occurrence in species with domain TIGR03715 that defines a novel class of signal peptide typical of the accessory secretory system.
Probab=35.74 E-value=57 Score=29.22 Aligned_cols=35 Identities=20% Similarity=0.105 Sum_probs=24.1
Q ss_pred eEEEEeeCCCC--CC--h----hHHHHHHhcCCCEEEEecccc
Q 021086 42 RIAFGSCANQT--AP--Q----PIWDAIIKFDPQVFIWMGDNI 76 (317)
Q Consensus 42 riAf~SC~~~~--~~--~----~~~~~ia~~~pD~~l~lGD~i 76 (317)
||++.|.-+.+ +. . .+.+.+.+.+||+++.+||.+
T Consensus 1 ki~~iSDlH~~~~~~~~~~~l~~~~~~~~~~~~d~vv~~GDl~ 43 (239)
T TIGR03729 1 KIAFSSDLHIDLNHFDTEEMLETLAQYLKKQKIDHLHIAGDIS 43 (239)
T ss_pred CEEEEEeecCCCCCCCHHHHHHHHHHHHHhcCCCEEEECCccc
Confidence 57888766632 21 2 244556668999999999977
No 61
>TIGR03006 pepcterm_polyde polysaccharide deactylase family protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide deacetylases (pfam01522). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene. The highest scoring homologs below the trusted cutoff for this model are found in several species of Methanosarcina, an archaeal genus.
Probab=34.01 E-value=41 Score=31.18 Aligned_cols=62 Identities=19% Similarity=0.240 Sum_probs=39.4
Q ss_pred cCCccCCCHH----HHHHHHHHHHhhCCCCEEEEecCccCccceeeccCCCcceEEEcCCCcccccc
Q 021086 211 YMESWGRFPK----ERDRLFQLIADSKRNGVFFISGDVHFGEITRYDCDVGYALYDITSSGLTQAVE 273 (317)
Q Consensus 211 ~~d~W~~~~~----er~~Ll~~l~~~~v~~vv~LSGDvH~~~~~~~~~~~~~~~~eiTSSgl~~~~~ 273 (317)
..++|+.++. .-.+|+++|++++++.++|+.|.+=.-....+. ..--..+||-|-+.+|...
T Consensus 15 ~~~~W~~~~~rv~~nt~riL~lL~~~gikATFFv~g~~~e~~p~lir-~i~~~GhEIgsHg~sH~~l 80 (265)
T TIGR03006 15 PRDEWDSLPCRVERNTDRILDLLDRHGVKATFFTLGWVAERYPELVR-RIVAAGHELASHGYGHERV 80 (265)
T ss_pred ChhhcCCccchHHHhHHHHHHHHHHcCCcEEEEEeccchhhCHHHHH-HHHHcCCEeeeccccCcCc
Confidence 4678888753 457999999999999999999864211101011 0001246887777777643
No 62
>cd08165 MPP_MPPE1 human MPPE1 and related proteins, metallophosphatase domain. MPPE1 is a functionally uncharacterized metallophosphatase domain-containing protein. The MPPE1 gene is located on chromosome 18 and is a candidate susceptibility gene for Bipolar disorder. MPPE1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to
Probab=31.96 E-value=34 Score=28.76 Aligned_cols=18 Identities=22% Similarity=0.385 Sum_probs=15.0
Q ss_pred HHhcCCCEEEEecccccc
Q 021086 61 IIKFDPQVFIWMGDNIYG 78 (317)
Q Consensus 61 ia~~~pD~~l~lGD~iY~ 78 (317)
+.+.+||+++++||.+..
T Consensus 34 i~~~~pd~vv~~GDl~~~ 51 (156)
T cd08165 34 LWLLQPDVVFVLGDLFDE 51 (156)
T ss_pred HHhcCCCEEEECCCCCCC
Confidence 445799999999999864
No 63
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=30.43 E-value=16 Score=29.90 Aligned_cols=17 Identities=29% Similarity=0.563 Sum_probs=10.7
Q ss_pred hhHHHHHHHHHHhhhhh
Q 021086 6 RWRWWAVFILGALIGSQ 22 (317)
Q Consensus 6 ~~~~~~~~~~~~~~~~~ 22 (317)
||-.|+|||++++|-+.
T Consensus 1 RW~l~~iii~~i~l~~~ 17 (130)
T PF12273_consen 1 RWVLFAIIIVAILLFLF 17 (130)
T ss_pred CeeeHHHHHHHHHHHHH
Confidence 67778776666554443
No 64
>COG2129 Predicted phosphoesterases, related to the Icc protein [General function prediction only]
Probab=29.77 E-value=2.2e+02 Score=25.92 Aligned_cols=67 Identities=10% Similarity=0.197 Sum_probs=37.5
Q ss_pred cHHHH-HHHHHHhcCCCCCeEEEEecceeecCCCCCCCCCccCCccCCCH-HHHHHHHHHHHhhCCCCEEEEecCccCcc
Q 021086 171 GSTQW-TWLEKELNGPSSAITIIVSSIQVISNLSATTGPLFYMESWGRFP-KERDRLFQLIADSKRNGVFFISGDVHFGE 248 (317)
Q Consensus 171 G~~Q~-~WL~~~L~~s~a~~kvv~s~vp~~~~~~~~~~~~~~~d~W~~~~-~er~~Ll~~l~~~~v~~vv~LSGDvH~~~ 248 (317)
+|++. .-|+.-+......-+|+.+|.|-++.. .|.-.++. ..=..+-+++.+.+.. +.|+||+|-+.
T Consensus 120 ~E~~I~s~l~~~v~~~~~~~~Il~~HaPP~gt~---------~d~~~g~~hvGS~~vr~~ieefqP~--l~i~GHIHEs~ 188 (226)
T COG2129 120 SEDEIYSKLKSLVKKADNPVNILLTHAPPYGTL---------LDTPSGYVHVGSKAVRKLIEEFQPL--LGLHGHIHESR 188 (226)
T ss_pred CHHHHHHHHHHHHhcccCcceEEEecCCCCCcc---------ccCCCCccccchHHHHHHHHHhCCc--eEEEeeecccc
Confidence 44444 344433333333344999998854422 12212222 2335666777777764 89999999764
No 65
>KOG3325 consensus Membrane coat complex Retromer, subunit VPS29/PEP11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.64 E-value=80 Score=27.04 Aligned_cols=26 Identities=19% Similarity=0.295 Sum_probs=19.7
Q ss_pred HHHHHh-hCCCCEEEEecCccCccceeec
Q 021086 226 FQLIAD-SKRNGVFFISGDVHFGEITRYD 253 (317)
Q Consensus 226 l~~l~~-~~v~~vv~LSGDvH~~~~~~~~ 253 (317)
|.+|++ -.++ ++|+|+.|-.++.+.+
T Consensus 99 L~~LaRqldvD--ILl~G~Th~f~Aye~e 125 (183)
T KOG3325|consen 99 LALLARQLDVD--ILLTGHTHKFEAYEHE 125 (183)
T ss_pred HHHHHHhcCCc--EEEeCCceeEEEEEeC
Confidence 444444 4677 8999999999988765
No 66
>PRK09968 serine/threonine-specific protein phosphatase 2; Provisional
Probab=28.54 E-value=50 Score=29.41 Aligned_cols=35 Identities=17% Similarity=0.191 Sum_probs=24.4
Q ss_pred eEEEEeeCCCCCChhHHHHHHh-----cCCCEEEEecccccc
Q 021086 42 RIAFGSCANQTAPQPIWDAIIK-----FDPQVFIWMGDNIYG 78 (317)
Q Consensus 42 riAf~SC~~~~~~~~~~~~ia~-----~~pD~~l~lGD~iY~ 78 (317)
||++.|.-+ |....+.++.+ .+.|.++++||.|.-
T Consensus 16 ri~visDiH--g~~~~l~~~l~~~~~~~~~d~l~~lGD~vdr 55 (218)
T PRK09968 16 HIWVVGDIH--GEYQLLQSRLHQLSFCPETDLLISVGDNIDR 55 (218)
T ss_pred eEEEEEecc--CCHHHHHHHHHhcCCCCCCCEEEECCCCcCC
Confidence 788887654 44555555432 367999999999974
No 67
>cd07398 MPP_YbbF-LpxH Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain. YbbF/LpxH is an Escherichia coli UDP-2,3-diacylglucosamine hydrolase thought to catalyze the fourth step of lipid A biosynthesis, in which a precursor UDP-2,3-diacylglucosamine is hydrolyzed to yield 2,3-diacylglucosamine 1-phosphate and UMP. YbbF belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues l
Probab=27.80 E-value=83 Score=27.23 Aligned_cols=30 Identities=17% Similarity=0.222 Sum_probs=21.5
Q ss_pred HHHHHHHHHhhCCCCEEEEecCccCccceeec
Q 021086 222 RDRLFQLIADSKRNGVFFISGDVHFGEITRYD 253 (317)
Q Consensus 222 r~~Ll~~l~~~~v~~vv~LSGDvH~~~~~~~~ 253 (317)
.+.+.+++++.+++ ++++||.|.....+..
T Consensus 178 ~~~~~~~~~~~~~~--~~i~GH~H~~~~~~~~ 207 (217)
T cd07398 178 EEAVARLARRKGVD--GVICGHTHRPALHELD 207 (217)
T ss_pred HHHHHHHHHhcCCC--EEEECCCCCCCeEEEC
Confidence 34455566667766 8999999999776543
No 68
>COG1408 Predicted phosphohydrolases [General function prediction only]
Probab=27.56 E-value=1.1e+02 Score=28.69 Aligned_cols=40 Identities=20% Similarity=0.133 Sum_probs=29.3
Q ss_pred ccceEEEEeeCCCCCCh----hHHHHHHhcCCCEEEEecccccc
Q 021086 39 LVSRIAFGSCANQTAPQ----PIWDAIIKFDPQVFIWMGDNIYG 78 (317)
Q Consensus 39 ~~~riAf~SC~~~~~~~----~~~~~ia~~~pD~~l~lGD~iY~ 78 (317)
..+||.+.|=-+..... ..-..+..+.||+++.+||++..
T Consensus 43 ~~~~iv~lSDlH~~~~~~~~~~~~~~i~~~~~DlivltGD~~~~ 86 (284)
T COG1408 43 QGLKIVQLSDLHSLPFREEKLALLIAIANELPDLIVLTGDYVDG 86 (284)
T ss_pred CCeEEEEeehhhhchhhHHHHHHHHHHHhcCCCEEEEEeeeecC
Confidence 46889999866654322 34445666888999999999996
No 69
>cd07391 MPP_PF1019 Pyrococcus furiosus PF1019 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to PF1019, an uncharacterized Pyrococcus furiosus protein. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for pro
Probab=27.41 E-value=63 Score=27.36 Aligned_cols=19 Identities=26% Similarity=0.385 Sum_probs=15.7
Q ss_pred HHhcCCCEEEEeccccccC
Q 021086 61 IIKFDPQVFIWMGDNIYGD 79 (317)
Q Consensus 61 ia~~~pD~~l~lGD~iY~d 79 (317)
+.+.+||.++++||.+...
T Consensus 37 ~~~~~~d~lii~GDl~~~~ 55 (172)
T cd07391 37 IEEYGPERLIILGDLKHSF 55 (172)
T ss_pred HHhcCCCEEEEeCcccccc
Confidence 4457999999999999753
No 70
>TIGR03283 thy_syn_methano thymidylate synthase, methanogen type. Thymidylate synthase makes dTMP for DNA synthesis, and is among the most widely distributed of all enzymes. Members of this protein family are encoded within a completed genome sequence if and only if that species is one of the methanogenenic archaea. In these species, tetrahydromethanopterin replaces tetrahydrofolate, The member from Methanobacterium thermoautotrophicum was shown to behave as a thymidylate synthase based on similar side reactions (the exchange of a characteristic proton with water), although the full reaction was not reconstituted. Partial sequence data showed no similarity to known thymidylate synthases simply because the region sequenced was from a distinctive N-terminal region not found in other thymidylate synthases. Members of this protein family appear, therefore, to a novel, tetrahydromethanopterin-dependent thymidylate synthase.
Probab=25.94 E-value=2e+02 Score=25.53 Aligned_cols=79 Identities=15% Similarity=0.083 Sum_probs=48.2
Q ss_pred cHHHHHHHHHHhcCCCCCeEEEEecc-ee------ecCCC------CCCCCC------ccCCccCCCHH---HHHHHHHH
Q 021086 171 GSTQWTWLEKELNGPSSAITIIVSSI-QV------ISNLS------ATTGPL------FYMESWGRFPK---ERDRLFQL 228 (317)
Q Consensus 171 G~~Q~~WL~~~L~~s~a~~kvv~s~v-p~------~~~~~------~~~~~~------~~~d~W~~~~~---er~~Ll~~ 228 (317)
|-.|++++.+.|++.+..=+.|++.. |- .++.. ...+.. -+.|-|.++|. .-..|+++
T Consensus 91 g~dQl~~vI~~Lk~~p~sRR~i~~~w~p~~d~~~~~~PC~~~~qf~vr~g~L~~~~~~RS~D~~~g~p~N~~~~~~L~~~ 170 (199)
T TIGR03283 91 GIDQIDYIIERLNQSPNSRRAIAITWDPPQDIKVDEVPCLQLVQFLIRDNKLYLTAFFRSNDVGGAWVANAIGLRRLQEY 170 (199)
T ss_pred ChhHHHHHHHHHhcCCCccceeEEEECcchhcccCCCCCcEEEEEEEeCCEEEEEEEEhhhhhhchhhhHHHHHHHHHHH
Confidence 68999999999988766555554321 10 00000 001110 13566777653 45667777
Q ss_pred HHhh---CCCCEEEEecCccCccc
Q 021086 229 IADS---KRNGVFFISGDVHFGEI 249 (317)
Q Consensus 229 l~~~---~v~~vv~LSGDvH~~~~ 249 (317)
|.+. ++...+..+||.|..+.
T Consensus 171 iA~~~gl~~G~~~~~~~~~HIYe~ 194 (199)
T TIGR03283 171 VAEKVGVEPGTLTTHAISAHIYER 194 (199)
T ss_pred HHHHhCCcceEEEEEEEEEEEecc
Confidence 7764 45678999999998853
No 71
>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=25.52 E-value=40 Score=31.61 Aligned_cols=17 Identities=35% Similarity=0.647 Sum_probs=14.6
Q ss_pred cCCCEEEEeccccccCC
Q 021086 64 FDPQVFIWMGDNIYGDI 80 (317)
Q Consensus 64 ~~pD~~l~lGD~iY~d~ 80 (317)
.+=+|+|.||||||.++
T Consensus 98 ~~~~f~l~LGDNi~~~~ 114 (286)
T COG1209 98 GDDDFVLYLGDNIFQDG 114 (286)
T ss_pred CCCceEEEecCceeccC
Confidence 35689999999999984
No 72
>COG4367 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.20 E-value=96 Score=23.98 Aligned_cols=37 Identities=30% Similarity=0.368 Sum_probs=28.8
Q ss_pred CCccCCCHHHHHHHHHHHHhhCC--CCEEEEecCccCccceee
Q 021086 212 MESWGRFPKERDRLFQLIADSKR--NGVFFISGDVHFGEITRY 252 (317)
Q Consensus 212 ~d~W~~~~~er~~Ll~~l~~~~v--~~vv~LSGDvH~~~~~~~ 252 (317)
.|-| .-|+-|.+.|++.|- --...||||-|-++....
T Consensus 51 ~dvW----~lRd~l~~~i~e~GqtP~PfT~Lsgdk~~yWFl~~ 89 (97)
T COG4367 51 ADVW----RLRDFLVQAIRESGQTPVPFTALSGDKHQYWFLSW 89 (97)
T ss_pred chhH----HHHHHHHHHHHhcCCCCCCeeeecCccccceeecc
Confidence 5666 469999999998763 246789999999887753
No 73
>cd07405 MPP_UshA_N Escherichia coli UshA and related proteins, N-terminal metallophosphatase domain. UshA is a bacterial periplasmic enzyme with UDP-sugar hydrolase and dinucleoside-polyphosphate hydrolase activities associated with its N-terminal metallophosphatase domain, and 5'-nucleotidase activity associated with its C-terminal domain. UshA has been studied in Escherichia coli where it is expressed from the ushA gene as an immature precursor and proteolytically cleaved to form a mature product upon export to the periplasm. UshA hydrolyzes many different nucleotides and nucleotide derivitives and has been shown to degrade external UDP-glucose to uridine, glucose 1-phosphate and phosphate for utilization by the cell. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs
Probab=25.11 E-value=1.2e+02 Score=28.13 Aligned_cols=58 Identities=10% Similarity=0.077 Sum_probs=34.1
Q ss_pred HHHHHHhcCCCCCeEEEEecceeecCCCCCCCCCccCCccCCC-HHHHHHHHHHHHhhCCCCEEEEecCccCcc
Q 021086 176 TWLEKELNGPSSAITIIVSSIQVISNLSATTGPLFYMESWGRF-PKERDRLFQLIADSKRNGVFFISGDVHFGE 248 (317)
Q Consensus 176 ~WL~~~L~~s~a~~kvv~s~vp~~~~~~~~~~~~~~~d~W~~~-~~er~~Ll~~l~~~~v~~vv~LSGDvH~~~ 248 (317)
++++ +|++..++..|+.+|...-.+ ...+- ..+..+|.+.+...+++ ++|+||.|...
T Consensus 164 ~~v~-~lk~~~~D~VI~lsH~G~~~~------------~~~~~~~~~~~~lA~~~~~~giD--~IigGHsH~~~ 222 (285)
T cd07405 164 EVVP-ELKQEKPDIVIAATHMGHYDN------------GEHGSNAPGDVEMARALPAGGLD--LIVGGHSQDPV 222 (285)
T ss_pred HHHH-HHHHcCCCEEEEEecccccCC------------ccccccCchHHHHHHhcCCCCCC--EEEeCCCCccc
Confidence 3444 466557899999998654211 10000 12334555555445787 78999999865
No 74
>PF08173 YbgT_YccB: Membrane bound YbgT-like protein; InterPro: IPR012994 This family contains a set of membrane proteins, typically 33 amino acids long. The family has no known function, but the protein is found in the operon CydAB in Escherichia coli. Members have a consensus motif (MWYFXW), which is rich in aromatic residues. The protein forms a single membrane-spanning helix. This family seems to be restricted to proteobacteria [].
Probab=24.98 E-value=57 Score=19.64 Aligned_cols=17 Identities=35% Similarity=0.940 Sum_probs=12.5
Q ss_pred HHHHHHHHHhhhhhhhc
Q 021086 9 WWAVFILGALIGSQFAC 25 (317)
Q Consensus 9 ~~~~~~~~~~~~~~~~~ 25 (317)
|....|+|++|+++|++
T Consensus 2 WYfaWilG~~lA~~~~i 18 (28)
T PF08173_consen 2 WYFAWILGVLLACAFGI 18 (28)
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 55667888888887764
No 75
>PRK11340 phosphodiesterase YaeI; Provisional
Probab=24.50 E-value=45 Score=30.68 Aligned_cols=19 Identities=21% Similarity=0.518 Sum_probs=15.0
Q ss_pred HhhCCCCEEEEecCccCccce
Q 021086 230 ADSKRNGVFFISGDVHFGEIT 250 (317)
Q Consensus 230 ~~~~v~~vv~LSGDvH~~~~~ 250 (317)
.+.+++ ++||||.|-+++.
T Consensus 199 ~~~~~d--L~lsGHTHGGQi~ 217 (271)
T PRK11340 199 RDEPWD--LMLCGHTHGGQLR 217 (271)
T ss_pred ccCCCC--EEEeccccCCeEE
Confidence 345666 8999999999875
No 76
>COG2949 SanA Uncharacterized membrane protein [Function unknown]
Probab=23.94 E-value=2.5e+02 Score=25.42 Aligned_cols=73 Identities=18% Similarity=0.241 Sum_probs=39.2
Q ss_pred chhHHHHHHHHHHhhhhhhhc-------ccccCCCCCCC-CCccceEEEEeeCCC-C-CChhHHH-----HHH---hcCC
Q 021086 5 KRWRWWAVFILGALIGSQFAC-------GGGNDSTKANH-EALVSRIAFGSCANQ-T-APQPIWD-----AII---KFDP 66 (317)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~-------~~~~~~t~p~~-~~~~~riAf~SC~~~-~-~~~~~~~-----~ia---~~~p 66 (317)
||-+||+.+++++++.-+++- +++.+=+.+.. +++++-+.+|.--.. . .++..|. +++ +.+.
T Consensus 15 rrl~~~ll~lv~~~~a~~l~~dr~i~~~t~~~i~~~~~~lP~r~vgvVLGtsky~~~g~~N~yy~~Ri~aA~~ly~~gKV 94 (235)
T COG2949 15 RRLFRILLVLVGALLATVLIADRWISWATAGLIYDDIQDLPARQVGVVLGTSKYLAKGPPNRYYTYRIDAAIALYKAGKV 94 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccChhhCCccceEEEEeccccccCCCccHhHHHHHHHHHHHHhcCCe
Confidence 344567777766665554432 22333333333 335677777744232 2 2233332 222 3699
Q ss_pred CEEEEeccccc
Q 021086 67 QVFIWMGDNIY 77 (317)
Q Consensus 67 D~~l~lGD~iY 77 (317)
+.+|..|||-=
T Consensus 95 ~~LLlSGDN~~ 105 (235)
T COG2949 95 NYLLLSGDNAT 105 (235)
T ss_pred eEEEEecCCCc
Confidence 99999999854
No 77
>PF04790 Sarcoglycan_1: Sarcoglycan complex subunit protein; InterPro: IPR006875 The dystrophin glycoprotein complex (DGC) is a membrane-spanning complex that links the interior cytoskeleton to the extracellular matrix in muscle. The sarcoglycan complex is a subcomplex within the DGC and is composed of several muscle-specific, transmembrane proteins (alpha-, beta-, gamma-, delta- and zeta-sarcoglycan). The sarcoglycans are asparagine-linked glycosylated proteins with single transmembrane domains. This family contains beta, gamma and delta members [, ].; GO: 0007010 cytoskeleton organization, 0016012 sarcoglycan complex, 0016021 integral to membrane
Probab=23.46 E-value=50 Score=30.70 Aligned_cols=23 Identities=17% Similarity=0.322 Sum_probs=18.3
Q ss_pred ccchhHHHHHHHHHHhhhhhhhc
Q 021086 3 GVKRWRWWAVFILGALIGSQFAC 25 (317)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~ 25 (317)
|...||-|++|+|+++|.+-.+.
T Consensus 5 Gi~Gwrk~cly~~vllL~il~ii 27 (264)
T PF04790_consen 5 GIYGWRKRCLYLFVLLLFILAII 27 (264)
T ss_pred chhhhhhhhHHHHHHHHHHHHHH
Confidence 78899999999998887654443
No 78
>TIGR01854 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase. This model represents LpxH, UDP-2,3-diacylglucosamine hydrolase, and essential enzyme in E. coli that catalyzes the fourth step in lipid A biosynthesis. Note that Pseudomonas aeruginosa has both a member of this family that shares this function and a more distant homolog, designated LpxH2, that does not. Many species that produce lipid A lack an lpxH gene in this family; some of those species have an lpxH2 gene instead, although for which the function is unknown.
Probab=22.34 E-value=1e+02 Score=27.45 Aligned_cols=28 Identities=14% Similarity=0.178 Sum_probs=20.9
Q ss_pred HHHHHHHhhCCCCEEEEecCccCccceeec
Q 021086 224 RLFQLIADSKRNGVFFISGDVHFGEITRYD 253 (317)
Q Consensus 224 ~Ll~~l~~~~v~~vv~LSGDvH~~~~~~~~ 253 (317)
.+.+++++.+++ ++++||.|........
T Consensus 176 ~~~~~~~~~~~~--~~i~GHtH~~~~~~~~ 203 (231)
T TIGR01854 176 EVAAVMRRYGVD--RLIHGHTHRPAIHPLQ 203 (231)
T ss_pred HHHHHHHHcCCC--EEEECCccCcceeecc
Confidence 356666777776 8999999999866543
No 79
>PF14582 Metallophos_3: Metallophosphoesterase, calcineurin superfamily; PDB: 1UF3_B 2YVT_A.
Probab=22.03 E-value=84 Score=28.85 Aligned_cols=60 Identities=13% Similarity=0.088 Sum_probs=31.4
Q ss_pred HHHHHHhcCCCCCeEEEEecceeecCCCCCCCCCccCCccCCCHHHHHHHHHHHHhhCCCCEEEEecCccCccce
Q 021086 176 TWLEKELNGPSSAITIIVSSIQVISNLSATTGPLFYMESWGRFPKERDRLFQLIADSKRNGVFFISGDVHFGEIT 250 (317)
Q Consensus 176 ~WL~~~L~~s~a~~kvv~s~vp~~~~~~~~~~~~~~~d~W~~~~~er~~Ll~~l~~~~v~~vv~LSGDvH~~~~~ 250 (317)
.+..+.|..-+..-+|+.-++|- +.. . .... . .=+.+-++|++++.. |+|+||+|-+...
T Consensus 162 ey~lk~l~elk~~r~IlLfhtpP--d~~--k----g~~h-~----GS~~V~dlIk~~~P~--ivl~Ghihe~~~~ 221 (255)
T PF14582_consen 162 EYSLKFLRELKDYRKILLFHTPP--DLH--K----GLIH-V----GSAAVRDLIKTYNPD--IVLCGHIHESHGK 221 (255)
T ss_dssp HHHHGGGGGCTSSEEEEEESS-B--TBC--T----CTBT-T----SBHHHHHHHHHH--S--EEEE-SSS-EE--
T ss_pred HHHHHHHHhcccccEEEEEecCC--ccC--C----Cccc-c----cHHHHHHHHHhcCCc--EEEecccccchhh
Confidence 44456666655556777777763 110 0 0011 1 125567888888876 8899999988643
No 80
>cd00844 MPP_Dbr1_N Dbr1 RNA lariat debranching enzyme, N-terminal metallophosphatase domain. Dbr1 is an RNA lariat debranching enzyme that hydrolyzes 2'-5' phosphodiester bonds at the branch points of excised intron lariats. This alignment model represents the N-terminal metallophosphatase domain of Dbr1. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal s
Probab=21.92 E-value=98 Score=28.61 Aligned_cols=28 Identities=14% Similarity=0.178 Sum_probs=19.7
Q ss_pred HHHHHHHhhCCCCEEEEecCccCccceeec
Q 021086 224 RLFQLIADSKRNGVFFISGDVHFGEITRYD 253 (317)
Q Consensus 224 ~Ll~~l~~~~v~~vv~LSGDvH~~~~~~~~ 253 (317)
.+.++++..+.+ ..+|||+|......++
T Consensus 207 ~~~~ll~~lkPr--yhf~gH~H~~f~~~~~ 234 (262)
T cd00844 207 AAEELLKHLKPR--YWFSAHLHVKFAALVP 234 (262)
T ss_pred HHHHHHHHhCCC--EEEEecCCcccceecC
Confidence 345666666666 8999999997655444
No 81
>cd07409 MPP_CD73_N CD73 ecto-5'-nucleotidase and related proteins, N-terminal metallophosphatase domain. CD73 is a mammalian ecto-5'-nucleotidase expressed in endothelial cells and lymphocytes that catalyzes the conversion of 5'-AMP to adenosine in the final step of a pathway that generates adenosine from ATP. This pathway also includes a CD39 nucleoside triphosphate dephosphorylase that mediates the dephosphorylation of ATP to ADP and then to 5'-AMP. These enzymes all have an N-terminal metallophosphatase domain and a C-terminal 5'nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active si
Probab=21.40 E-value=2e+02 Score=26.54 Aligned_cols=86 Identities=17% Similarity=0.106 Sum_probs=45.7
Q ss_pred cEEEEEeCCCCceeEEEEecCCCCCCCCC--CCCCCCcHHH-HHHHHHHhcCCCCCeEEEEecceeecCCCCCCCCCccC
Q 021086 136 IYTSYTFGPVGRQIKIILLDTRYHRDPLS--SDGTILGSTQ-WTWLEKELNGPSSAITIIVSSIQVISNLSATTGPLFYM 212 (317)
Q Consensus 136 iY~s~~~G~~g~~v~~~~LDtR~~R~~~~--~~~~~LG~~Q-~~WL~~~L~~s~a~~kvv~s~vp~~~~~~~~~~~~~~~ 212 (317)
.|.-+..+ |.++.|+-+-+........ +.-.+....+ .+-..++|++..++..|+.+|..+
T Consensus 131 p~~i~~~~--G~kIgviG~~~~~~~~~~~~~~~~~~~d~~~~~~~~v~~lr~~~~D~II~l~H~G~-------------- 194 (281)
T cd07409 131 PSTILTVG--GEKIGIIGYTTPDTTELSSPGGKVKFLDEIEAAQKEADKLKAQGVNKIIALSHSGY-------------- 194 (281)
T ss_pred CeEEEEEC--CEEEEEEEEecCcccccccCCCceEECCHHHHHHHHHHHHHhcCCCEEEEEeccCc--------------
Confidence 35555665 3468888776543322111 1222333321 122223555556888888887532
Q ss_pred CccCCCHHHHHHHHHHHHhhCCCCEEEEecCccCcc
Q 021086 213 ESWGRFPKERDRLFQLIADSKRNGVFFISGDVHFGE 248 (317)
Q Consensus 213 d~W~~~~~er~~Ll~~l~~~~v~~vv~LSGDvH~~~ 248 (317)
. +..+|.+.+ .+++ ++++||.|...
T Consensus 195 ------~-~d~~la~~~--~giD--~IiggH~H~~~ 219 (281)
T cd07409 195 ------E-VDKEIARKV--PGVD--VIVGGHSHTFL 219 (281)
T ss_pred ------h-hHHHHHHcC--CCCc--EEEeCCcCccc
Confidence 0 112343333 4677 78999999974
Done!