BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021087
(317 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1V1M|A Chain A, Crosstalk Between Cofactor Binding And The Phosphorylation
Loop Conformation In The Bckd Machine
Length = 400
Score = 184 bits (468), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 93/215 (43%), Positives = 133/215 (61%), Gaps = 1/215 (0%)
Query: 84 FPGGKVGYTSEMRFIPESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQ 143
FPG + ++ FI + +P +RV+D G++I S+ + KE +K+Y M L
Sbjct: 9 FPGASAEFIDKLEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLN 68
Query: 144 VMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQ 203
MD +LYE+QRQGR SFY+T GEE ++GSAAAL D + QYRE GVL++R Y L+
Sbjct: 69 TMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLEL 128
Query: 204 FANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAV 263
F Q + N +D GKGRQMP+HYG K+ +++TISSP+ATQ+PQAVG AY+ K + +
Sbjct: 129 FMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVI 188
Query: 264 AYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNN 298
Y G+G SE + AT+ P++ +NN
Sbjct: 189 CYFGEGAASEGDAH-AGFNFAATLECPIIFFCRNN 222
>pdb|1V16|A Chain A, Crosstalk Between Cofactor Binding And The Phosphorylation
Loop Conformation In The Bckd Machine
Length = 400
Score = 184 bits (468), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 93/215 (43%), Positives = 133/215 (61%), Gaps = 1/215 (0%)
Query: 84 FPGGKVGYTSEMRFIPESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQ 143
FPG + ++ FI + +P +RV+D G++I S+ + KE +K+Y M L
Sbjct: 9 FPGASAEFIDKLEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLN 68
Query: 144 VMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQ 203
MD +LYE+QRQGR SFY+T GEE ++GSAAAL D + QYRE GVL++R Y L+
Sbjct: 69 TMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLEL 128
Query: 204 FANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAV 263
F Q + N +D GKGRQMP+HYG K+ +++TISSP+ATQ+PQAVG AY+ K + +
Sbjct: 129 FMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVI 188
Query: 264 AYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNN 298
Y G+G SE + AT+ P++ +NN
Sbjct: 189 CYFGEGAASEGDAH-AGFNFAATLECPIIFFCRNN 222
>pdb|1X80|A Chain A, Crystal Structure Of The Human Mitochondrial
Branched-chain Alpha- Ketoacid Dehydrogenase
Length = 400
Score = 184 bits (468), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 93/215 (43%), Positives = 133/215 (61%), Gaps = 1/215 (0%)
Query: 84 FPGGKVGYTSEMRFIPESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQ 143
FPG + ++ FI + +P +RV+D G++I S+ + KE +K+Y M L
Sbjct: 9 FPGASAEFIDKLEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLN 68
Query: 144 VMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQ 203
MD +LYE+QRQGR SFY+T GEE ++GSAAAL D + QYRE GVL++R Y L+
Sbjct: 69 TMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLEL 128
Query: 204 FANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAV 263
F Q + N +D GKGRQMP+HYG K+ +++TISSP+ATQ+PQAVG AY+ K + +
Sbjct: 129 FMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVI 188
Query: 264 AYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNN 298
Y G+G SE + AT+ P++ +NN
Sbjct: 189 CYFGEGAASEGDAH-AGFNFAATLECPIIFFCRNN 222
>pdb|1OLU|A Chain A, Roles Of His291-Alpha And His146-Beta' In The Reductive
Acylation Reaction Catalyzed By Human Branched-Chain
Alpha-Ketoacid Dehydrogenase
pdb|1V1R|A Chain A, Crosstalk Between Cofactor Binding And The Phosphorylation
Loop Conformation In The Bckd Machine
Length = 400
Score = 184 bits (467), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 93/215 (43%), Positives = 133/215 (61%), Gaps = 1/215 (0%)
Query: 84 FPGGKVGYTSEMRFIPESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQ 143
FPG + ++ FI + +P +RV+D G++I S+ + KE +K+Y M L
Sbjct: 9 FPGASAEFIDKLEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLN 68
Query: 144 VMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQ 203
MD +LYE+QRQGR SFY+T GEE ++GSAAAL D + QYRE GVL++R Y L+
Sbjct: 69 TMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLEL 128
Query: 204 FANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAV 263
F Q + N +D GKGRQMP+HYG K+ +++TISSP+ATQ+PQAVG AY+ K + +
Sbjct: 129 FMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVI 188
Query: 264 AYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNN 298
Y G+G SE + AT+ P++ +NN
Sbjct: 189 CYFGEGAASEGDAH-AGFNFAATLECPIIFFCRNN 222
>pdb|2J9F|A Chain A, Human Branched-Chain Alpha-Ketoacid Dehydrogenase-
Decarboxylase E1b
pdb|2J9F|C Chain C, Human Branched-Chain Alpha-Ketoacid Dehydrogenase-
Decarboxylase E1b
Length = 400
Score = 184 bits (467), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 93/215 (43%), Positives = 133/215 (61%), Gaps = 1/215 (0%)
Query: 84 FPGGKVGYTSEMRFIPESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQ 143
FPG + ++ FI + +P +RV+D G++I S+ + KE +K+Y M L
Sbjct: 9 FPGASAEFIDKLEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLN 68
Query: 144 VMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQ 203
MD +LYE+QRQGR SFY+T GEE ++GSAAAL D + QYRE GVL++R Y L+
Sbjct: 69 TMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLEL 128
Query: 204 FANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAV 263
F Q + N +D GKGRQMP+HYG K+ +++TISSP+ATQ+PQAVG AY+ K + +
Sbjct: 129 FMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVI 188
Query: 264 AYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNN 298
Y G+G SE + AT+ P++ +NN
Sbjct: 189 CYFGEGAASEGDAH-AGFNFAATLECPIIFFCRNN 222
>pdb|1X7W|A Chain A, Crystal Structure Of The Human Mitochondrial
Branched-Chain Alpha- Ketoacid Dehydrogenase
Length = 400
Score = 184 bits (467), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 93/215 (43%), Positives = 133/215 (61%), Gaps = 1/215 (0%)
Query: 84 FPGGKVGYTSEMRFIPESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQ 143
FPG + ++ FI + +P +RV+D G++I S+ + KE +K+Y M L
Sbjct: 9 FPGASAEFIDKLEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLN 68
Query: 144 VMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQ 203
MD +LYE+QRQGR SFY+T GEE ++GSAAAL D + QYRE GVL++R Y L+
Sbjct: 69 TMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLEL 128
Query: 204 FANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAV 263
F Q + N +D GKGRQMP+HYG K+ +++TISSP+ATQ+PQAVG AY+ K + +
Sbjct: 129 FMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVI 188
Query: 264 AYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNN 298
Y G+G SE + AT+ P++ +NN
Sbjct: 189 CYFGEGAASEGDAH-AGFNFAATLECPIIFFCRNN 222
>pdb|1X7Z|A Chain A, Crystal Structure Of The Human Mitochondrial
Branched-Chain Alpha- Ketoacid Dehydrogenase
Length = 400
Score = 184 bits (467), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 93/215 (43%), Positives = 133/215 (61%), Gaps = 1/215 (0%)
Query: 84 FPGGKVGYTSEMRFIPESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQ 143
FPG + ++ FI + +P +RV+D G++I S+ + KE +K+Y M L
Sbjct: 9 FPGASAEFIDKLEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLN 68
Query: 144 VMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQ 203
MD +LYE+QRQGR SFY+T GEE ++GSAAAL D + QYRE GVL++R Y L+
Sbjct: 69 TMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLEL 128
Query: 204 FANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAV 263
F Q + N +D GKGRQMP+HYG K+ +++TISSP+ATQ+PQAVG AY+ K + +
Sbjct: 129 FMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVI 188
Query: 264 AYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNN 298
Y G+G SE + AT+ P++ +NN
Sbjct: 189 CYFGEGAASEGDAH-AGFNFAATLECPIIFFCRNN 222
>pdb|1X7X|A Chain A, Crystal Structure Of The Human Mitochondrial
Branched-Chain Alpha- Ketoacid Dehydrogenase
Length = 400
Score = 184 bits (467), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 93/215 (43%), Positives = 133/215 (61%), Gaps = 1/215 (0%)
Query: 84 FPGGKVGYTSEMRFIPESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQ 143
FPG + ++ FI + +P +RV+D G++I S+ + KE +K+Y M L
Sbjct: 9 FPGASAEFIDKLEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLN 68
Query: 144 VMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQ 203
MD +LYE+QRQGR SFY+T GEE ++GSAAAL D + QYRE GVL++R Y L+
Sbjct: 69 TMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLEL 128
Query: 204 FANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAV 263
F Q + N +D GKGRQMP+HYG K+ +++TISSP+ATQ+PQAVG AY+ K + +
Sbjct: 129 FMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVI 188
Query: 264 AYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNN 298
Y G+G SE + AT+ P++ +NN
Sbjct: 189 CYFGEGAASEGDAH-AGFNFAATLECPIIFFCRNN 222
>pdb|2BFF|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
Length = 400
Score = 184 bits (467), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 93/215 (43%), Positives = 133/215 (61%), Gaps = 1/215 (0%)
Query: 84 FPGGKVGYTSEMRFIPESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQ 143
FPG + ++ FI + +P +RV+D G++I S+ + KE +K+Y M L
Sbjct: 9 FPGASAEFIDKLEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLN 68
Query: 144 VMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQ 203
MD +LYE+QRQGR SFY+T GEE ++GSAAAL D + QYRE GVL++R Y L+
Sbjct: 69 TMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLEL 128
Query: 204 FANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAV 263
F Q + N +D GKGRQMP+HYG K+ +++TISSP+ATQ+PQAVG AY+ K + +
Sbjct: 129 FMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVI 188
Query: 264 AYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNN 298
Y G+G SE + AT+ P++ +NN
Sbjct: 189 CYFGEGAASEGDAH-AGFNFAATLECPIIFFCRNN 222
>pdb|1DTW|A Chain A, Human Branched-Chain Alpha-Keto Acid Dehydrogenase
pdb|1OLS|A Chain A, Roles Of His291-Alpha And His146-Beta' In The Reductive
Acylation Reaction Catalyzed By Human Branched-Chain
Alpha-Ketoacid Dehydrogenase
pdb|1OLX|A Chain A, Roles Of His291-alpha And His146-beta' In The Reductive
Acylation Reaction Catalyzed By Human Branched-chain
Alpha-ketoacid Dehydrogenase
pdb|1U5B|A Chain A, Crystal Structure Of The Human Mitochondrial
Branched-Chain Alpha- Ketoacid Dehydrogenase
pdb|1WCI|A Chain A, Reactivity Modulation Of Human Branched-chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
pdb|2BEU|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
pdb|2BEV|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
pdb|2BEW|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
Length = 400
Score = 184 bits (467), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 93/215 (43%), Positives = 133/215 (61%), Gaps = 1/215 (0%)
Query: 84 FPGGKVGYTSEMRFIPESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQ 143
FPG + ++ FI + +P +RV+D G++I S+ + KE +K+Y M L
Sbjct: 9 FPGASAEFIDKLEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLN 68
Query: 144 VMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQ 203
MD +LYE+QRQGR SFY+T GEE ++GSAAAL D + QYRE GVL++R Y L+
Sbjct: 69 TMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLEL 128
Query: 204 FANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAV 263
F Q + N +D GKGRQMP+HYG K+ +++TISSP+ATQ+PQAVG AY+ K + +
Sbjct: 129 FMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVI 188
Query: 264 AYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNN 298
Y G+G SE + AT+ P++ +NN
Sbjct: 189 CYFGEGAASEGDAH-AGFNFAATLECPIIFFCRNN 222
>pdb|1X7Y|A Chain A, Crystal Structure Of The Human Mitochondrial
Branched-chain Alpha- Ketoacid Dehydrogenase
Length = 400
Score = 184 bits (467), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 93/215 (43%), Positives = 133/215 (61%), Gaps = 1/215 (0%)
Query: 84 FPGGKVGYTSEMRFIPESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQ 143
FPG + ++ FI + +P +RV+D G++I S+ + KE +K+Y M L
Sbjct: 9 FPGASAEFIDKLEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLN 68
Query: 144 VMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQ 203
MD +LYE+QRQGR SFY+T GEE ++GSAAAL D + QYRE GVL++R Y L+
Sbjct: 69 TMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLEL 128
Query: 204 FANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAV 263
F Q + N +D GKGRQMP+HYG K+ +++TISSP+ATQ+PQAVG AY+ K + +
Sbjct: 129 FMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVI 188
Query: 264 AYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNN 298
Y G+G SE + AT+ P++ +NN
Sbjct: 189 CYFGEGAASEGDAH-AGFNFAATLECPIIFFCRNN 222
>pdb|1V11|A Chain A, Crosstalk Between Cofactor Binding And The Phosphorylation
Loop Conformation In The Bckd Machine
Length = 400
Score = 184 bits (467), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 93/215 (43%), Positives = 133/215 (61%), Gaps = 1/215 (0%)
Query: 84 FPGGKVGYTSEMRFIPESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQ 143
FPG + ++ FI + +P +RV+D G++I S+ + KE +K+Y M L
Sbjct: 9 FPGASAEFIDKLEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLN 68
Query: 144 VMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQ 203
MD +LYE+QRQGR SFY+T GEE ++GSAAAL D + QYRE GVL++R Y L+
Sbjct: 69 TMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLEL 128
Query: 204 FANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAV 263
F Q + N +D GKGRQMP+HYG K+ +++TISSP+ATQ+PQAVG AY+ K + +
Sbjct: 129 FMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVI 188
Query: 264 AYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNN 298
Y G+G SE + AT+ P++ +NN
Sbjct: 189 CYFGEGAASEGDAH-AGFNFAATLECPIIFFCRNN 222
>pdb|2BFC|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
Length = 400
Score = 183 bits (464), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 92/215 (42%), Positives = 133/215 (61%), Gaps = 1/215 (0%)
Query: 84 FPGGKVGYTSEMRFIPESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQ 143
FPG + ++ FI + +P +RV+D G++I S+ + KE +K+Y M L
Sbjct: 9 FPGASAEFIDKLEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLN 68
Query: 144 VMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQ 203
MD +LYE+QRQGR SFY+T GEE ++GSAAAL D + Q+RE GVL++R Y L+
Sbjct: 69 TMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQFREAGVLMYRDYPLEL 128
Query: 204 FANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAV 263
F Q + N +D GKGRQMP+HYG K+ +++TISSP+ATQ+PQAVG AY+ K + +
Sbjct: 129 FMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVI 188
Query: 264 AYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNN 298
Y G+G SE + AT+ P++ +NN
Sbjct: 189 CYFGEGAASEGDAH-AGFNFAATLECPIIFFCRNN 222
>pdb|2BFB|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
Length = 400
Score = 182 bits (461), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 92/215 (42%), Positives = 132/215 (61%), Gaps = 1/215 (0%)
Query: 84 FPGGKVGYTSEMRFIPESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQ 143
FPG + ++ FI + +P +RV+D G++I S+ + KE +K+Y M L
Sbjct: 9 FPGASAEFIDKLEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLN 68
Query: 144 VMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQ 203
MD +LYE+QRQGR SFY+T GEE ++GSAAAL D + YRE GVL++R Y L+
Sbjct: 69 TMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALDNTDLVFGAYREAGVLMYRDYPLEL 128
Query: 204 FANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAV 263
F Q + N +D GKGRQMP+HYG K+ +++TISSP+ATQ+PQAVG AY+ K + +
Sbjct: 129 FMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVI 188
Query: 264 AYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNN 298
Y G+G SE + AT+ P++ +NN
Sbjct: 189 CYFGEGAASEGDAH-AGFNFAATLECPIIFFCRNN 222
>pdb|2BFD|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
Length = 400
Score = 181 bits (458), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 92/215 (42%), Positives = 132/215 (61%), Gaps = 1/215 (0%)
Query: 84 FPGGKVGYTSEMRFIPESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQ 143
FPG + ++ FI + +P +RV+D G++I S+ + KE +K+Y M L
Sbjct: 9 FPGASAEFIDKLEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLN 68
Query: 144 VMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQ 203
MD +LYE+QRQGR SFY+T GEE ++GSAAAL D + Q RE GVL++R Y L+
Sbjct: 69 TMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQAREAGVLMYRDYPLEL 128
Query: 204 FANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAV 263
F Q + N +D GKGRQMP+HYG K+ +++TISSP+ATQ+PQAVG AY+ K + +
Sbjct: 129 FMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVI 188
Query: 264 AYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNN 298
Y G+G SE + AT+ P++ +NN
Sbjct: 189 CYFGEGAASEGDAH-AGFNFAATLECPIIFFCRNN 222
>pdb|2BFE|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
Length = 400
Score = 178 bits (452), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 91/215 (42%), Positives = 131/215 (60%), Gaps = 1/215 (0%)
Query: 84 FPGGKVGYTSEMRFIPESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQ 143
FPG + ++ FI + +P +RV+D G++I S+ + KE +K+Y M L
Sbjct: 9 FPGASAEFIDKLEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLN 68
Query: 144 VMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQ 203
MD +LYE+QRQGR SFY+T GEE ++GSAAAL D + RE GVL++R Y L+
Sbjct: 69 TMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALDNTDLVFGAAREAGVLMYRDYPLEL 128
Query: 204 FANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAV 263
F Q + N +D GKGRQMP+HYG K+ +++TISSP+ATQ+PQAVG AY+ K + +
Sbjct: 129 FMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVI 188
Query: 264 AYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNN 298
Y G+G SE + AT+ P++ +NN
Sbjct: 189 CYFGEGAASEGDAH-AGFNFAATLECPIIFFCRNN 222
>pdb|1UM9|A Chain A, Branched-chain 2-oxo Acid Dehydrogenase (e1) From Thermus
Thermophilus Hb8 In Apo-form
pdb|1UM9|C Chain C, Branched-chain 2-oxo Acid Dehydrogenase (e1) From Thermus
Thermophilus Hb8 In Apo-form
pdb|1UMB|A Chain A, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 In Holo-Form
pdb|1UMB|C Chain C, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 In Holo-Form
pdb|1UMC|A Chain A, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methylpentanoate
pdb|1UMC|C Chain C, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methylpentanoate
pdb|1UMD|A Chain A, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methyl-2-Oxopentanoate As An
Intermediate
pdb|1UMD|C Chain C, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methyl-2-Oxopentanoate As An
Intermediate
Length = 367
Score = 116 bits (290), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 72/200 (36%), Positives = 105/200 (52%), Gaps = 5/200 (2%)
Query: 110 RVLDDNGELIKGSDFQ-QVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEE 168
R++ + GE + DF + E ++Y M+ +++D R G+ SF G E
Sbjct: 17 RLIGEEGEWL--GDFPLDLEGEKLRRLYRDMLAARMLDERYTILIRTGKTSFIAPAAGHE 74
Query: 169 AINIGSAAALSAD-DFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGS 227
A + A A+ D++ P YR+ G+ L G L++ Q+ A KAD KGRQMP H GS
Sbjct: 75 AAQVAIAHAIRPGFDWVFPYYRDHGLALALGIPLKELLGQMLATKADPNKGRQMPEHPGS 134
Query: 228 KKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLSSSSVATM 287
K LN+ T++SPIA+ +P A G A S+K+ + AV GDG TSE W + A
Sbjct: 135 KALNFFTVASPIASHVPPAAGAAISMKLLRTGQVAVCTFGDGATSEGDWY-AGINFAAVQ 193
Query: 288 AGPLVPIYQNNFEAMVLLLR 307
P V I +NNF A+ + R
Sbjct: 194 GAPAVFIAENNFYAISVDYR 213
>pdb|2BP7|A Chain A, New Crystal Form Of The Pseudomonas Putida Branched-Chain
Dehydrogenase (E1)
pdb|2BP7|C Chain C, New Crystal Form Of The Pseudomonas Putida Branched-Chain
Dehydrogenase (E1)
pdb|2BP7|E Chain E, New Crystal Form Of The Pseudomonas Putida Branched-Chain
Dehydrogenase (E1)
pdb|2BP7|G Chain G, New Crystal Form Of The Pseudomonas Putida Branched-Chain
Dehydrogenase (E1)
Length = 410
Score = 110 bits (276), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 60/164 (36%), Positives = 95/164 (57%), Gaps = 1/164 (0%)
Query: 110 RVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEA 169
RVLD+ G+ +G + + ++ + M+ ++ DS + AQRQ + SFY+ ++GEEA
Sbjct: 56 RVLDEQGD-AQGPWAEDIDPQILRQGMRAMLKTRIFDSRMVVAQRQKKMSFYMQSLGEEA 114
Query: 170 INIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKK 229
I G A AL+ D P YR+ +L+ R +L + Q+ +N+ D KGRQ+PI Y ++
Sbjct: 115 IGSGQALALNRTDMCFPTYRQQSILMARDVSLVEMICQLLSNERDPLKGRQLPIMYSVRE 174
Query: 230 LNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSE 273
+ TIS +ATQ QAVG A + ++ A A+ GDG T+E
Sbjct: 175 AGFFTISGNLATQFVQAVGWAMASAIKGDTKIASAWIGDGATAE 218
>pdb|1QS0|A Chain A, Crystal Structure Of Pseudomonas Putida 2-Oxoisovalerate
Dehydrogenase (Branched-Chain Alpha-Keto Acid
Dehydrogenase, E1b)
Length = 407
Score = 102 bits (254), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 59/164 (35%), Positives = 91/164 (55%), Gaps = 1/164 (0%)
Query: 110 RVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEA 169
RVLD+ G+ +G + + ++ + + ++ DS AQRQ + SFY ++GEEA
Sbjct: 55 RVLDEQGD-AQGPWAEDIDPQILRQGXRAXLKTRIFDSRXVVAQRQKKXSFYXQSLGEEA 113
Query: 170 INIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKK 229
I G A AL+ D P YR+ +L R +L + Q+ +N+ D KGRQ+PI Y ++
Sbjct: 114 IGSGQALALNRTDXCFPTYRQQSILXARDVSLVEXICQLLSNERDPLKGRQLPIXYSVRE 173
Query: 230 LNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSE 273
+ TIS +ATQ QAVG A + ++ A A+ GDG T+E
Sbjct: 174 AGFFTISGNLATQFVQAVGWAXASAIKGDTKIASAWIGDGATAE 217
>pdb|1W88|A Chain A, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
pdb|1W88|C Chain C, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
pdb|1W88|E Chain E, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
pdb|1W88|G Chain G, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
Length = 368
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/200 (33%), Positives = 99/200 (49%), Gaps = 12/200 (6%)
Query: 100 ESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFS 159
E ++ P F++L++ GE++ ++S E ++ MV +++D RQGR
Sbjct: 14 EKVAEQFPTFQILNEEGEVVNEEAMPELSDEQLKELMRRMVYTRILDQRSISLNRQGRLG 73
Query: 160 FYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGR 219
FY T G+EA I S AL +DFILP YR+ ++W G L Q F G
Sbjct: 74 FYAPTAGQEASQIASHFALEKEDFILPGYRDVPQIIWHGLPL----YQAFLFSRGHFHGN 129
Query: 220 QMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSE-QLWKP 278
Q+P + +N + I Q QA GVA LKM K A A+ YTGDGGTS+ ++
Sbjct: 130 QIP-----EGVNVLPPQIIIGAQYIQAAGVALGLKMRGKKAVAITYTGDGGTSQGNFYQG 184
Query: 279 LSSSSVATMAGPLVPIYQNN 298
++ + P + + QNN
Sbjct: 185 INFA--GAFKAPAIFVVQNN 202
>pdb|1W85|A Chain A, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W85|C Chain C, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W85|E Chain E, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W85|G Chain G, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
Length = 368
Score = 93.6 bits (231), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/200 (33%), Positives = 99/200 (49%), Gaps = 12/200 (6%)
Query: 100 ESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFS 159
E ++ P F++L++ GE++ ++S E ++ MV +++D RQGR
Sbjct: 14 EKVAEQFPTFQILNEEGEVVNEEAMPELSDEQLKELMRRMVYTRILDQRSISLNRQGRLG 73
Query: 160 FYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGR 219
FY T G+EA I S AL +DFILP YR+ ++W G L Q F G
Sbjct: 74 FYAPTAGQEASQIASHFALEKEDFILPGYRDVPQIIWHGLPL----YQAFLFSRGHFHGN 129
Query: 220 QMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSE-QLWKP 278
Q+P + +N + I Q QA GVA LKM K A A+ YTGDGGTS+ ++
Sbjct: 130 QIP-----EGVNVLPPQIIIGAQYIQAAGVALGLKMRGKKAVAITYTGDGGTSQGDFYEG 184
Query: 279 LSSSSVATMAGPLVPIYQNN 298
++ + P + + QNN
Sbjct: 185 INFA--GAFKAPAIFVVQNN 202
>pdb|3DVA|A Chain A, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|C Chain C, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|E Chain E, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|G Chain G, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
Length = 369
Score = 93.6 bits (231), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/200 (33%), Positives = 99/200 (49%), Gaps = 12/200 (6%)
Query: 100 ESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFS 159
E ++ P F++L++ GE++ ++S E ++ MV +++D RQGR
Sbjct: 15 EKVAEQFPTFQILNEEGEVVNEEAMPELSDEQLKELMRRMVYTRILDQRSISLNRQGRLG 74
Query: 160 FYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGR 219
FY T G+EA I S AL +DFILP YR+ ++W G L Q F G
Sbjct: 75 FYAPTAGQEASQIASHFALEKEDFILPGYRDVPQIIWHGLPL----YQAFLFSRGHFHGN 130
Query: 220 QMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSE-QLWKP 278
Q+P + +N + I Q QA GVA LKM K A A+ YTGDGGTS+ ++
Sbjct: 131 QIP-----EGVNVLPPQIIIGAQYIQAAGVALGLKMRGKKAVAITYTGDGGTSQGDFYEG 185
Query: 279 LSSSSVATMAGPLVPIYQNN 298
++ + P + + QNN
Sbjct: 186 INFA--GAFKAPAIFVVQNN 203
>pdb|3DUF|A Chain A, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DUF|C Chain C, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DUF|E Chain E, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DUF|G Chain G, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|A Chain A, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|C Chain C, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|E Chain E, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|G Chain G, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
Length = 369
Score = 93.6 bits (231), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/200 (33%), Positives = 99/200 (49%), Gaps = 12/200 (6%)
Query: 100 ESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFS 159
E ++ P F++L++ GE++ ++S E ++ MV +++D RQGR
Sbjct: 15 EKVAEQFPTFQILNEEGEVVNEEAMPELSDEQLKELMRRMVYTRILDQRSISLNRQGRLG 74
Query: 160 FYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGR 219
FY T G+EA I S AL +DFILP YR+ ++W G L Q F G
Sbjct: 75 FYAPTAGQEASQIASHFALEKEDFILPGYRDVPQIIWHGLPL----YQAFLFSRGHFHGN 130
Query: 220 QMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSE-QLWKP 278
Q+P + +N + I Q QA GVA LKM K A A+ YTGDGGTS+ ++
Sbjct: 131 QIP-----EGVNVLPPQIIIGAQYIQAAGVALGLKMRGKKAVAITYTGDGGTSQGDFYEG 185
Query: 279 LSSSSVATMAGPLVPIYQNN 298
++ + P + + QNN
Sbjct: 186 INFA--GAFKAPAIFVVQNN 203
>pdb|3EXF|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXF|C Chain C, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXF|E Chain E, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXF|G Chain G, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|C Chain C, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|E Chain E, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|G Chain G, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|I Chain I, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|K Chain K, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|M Chain M, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|O Chain O, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|Q Chain Q, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|S Chain S, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|U Chain U, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|W Chain W, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|Y Chain Y, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|1 Chain 1, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|3 Chain 3, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|5 Chain 5, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXH|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXH|E Chain E, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
Length = 382
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 84/178 (47%), Gaps = 6/178 (3%)
Query: 127 VSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRF-SFYLTTIGEEAINIGSAAALSADDFIL 185
+++E +K Y M T++ M+ + +Q F G+EA +G A ++ D ++
Sbjct: 48 LTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGINPTDHLI 107
Query: 186 PQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQ 245
YR G RG ++++ ++ K KG+ +H +K N+ + + Q+P
Sbjct: 108 TAYRAHGFTFTRGLSVREILAELTGRKGGCAKGKGGSMHMYAK--NFYGGNGIVGAQVPL 165
Query: 246 AVGVAYSLKMEKKDACAVAYTGDGGTSE-QLWKPLSSSSVATMAGPLVPIYQNNFEAM 302
G+A + K KD + GDG ++ Q+++ + +++ + P + I +NN M
Sbjct: 166 GAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKL--PCIFICENNRYGM 221
>pdb|2OZL|A Chain A, Human Pyruvate Dehydrogenase S264e Variant
pdb|2OZL|C Chain C, Human Pyruvate Dehydrogenase S264e Variant
Length = 365
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 84/178 (47%), Gaps = 6/178 (3%)
Query: 127 VSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRF-SFYLTTIGEEAINIGSAAALSADDFIL 185
+++E +K Y M T++ M+ + +Q F G+EA +G A ++ D ++
Sbjct: 31 LTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGINPTDHLI 90
Query: 186 PQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQ 245
YR G RG ++++ ++ K KG+ +H +K N+ + + Q+P
Sbjct: 91 TAYRAHGFTFTRGLSVREILAELTGRKGGCAKGKGGSMHMYAK--NFYGGNGIVGAQVPL 148
Query: 246 AVGVAYSLKMEKKDACAVAYTGDGGTSE-QLWKPLSSSSVATMAGPLVPIYQNNFEAM 302
G+A + K KD + GDG ++ Q+++ + +++ + P + I +NN M
Sbjct: 149 GAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKL--PCIFICENNRYGM 204
>pdb|3EXH|C Chain C, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXH|G Chain G, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
Length = 382
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 84/178 (47%), Gaps = 6/178 (3%)
Query: 127 VSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRF-SFYLTTIGEEAINIGSAAALSADDFIL 185
+++E +K Y M T++ M+ + +Q F G+EA +G A ++ D ++
Sbjct: 48 LTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGINPTDHLI 107
Query: 186 PQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQ 245
YR G RG ++++ ++ K KG+ +H +K N+ + + Q+P
Sbjct: 108 TAYRAHGFTFTRGLSVREILAELTGRKGGCAKGKGGSMHMYAK--NFYGGNGIVGAQVPL 165
Query: 246 AVGVAYSLKMEKKDACAVAYTGDGGTSE-QLWKPLSSSSVATMAGPLVPIYQNNFEAM 302
G+A + K KD + GDG ++ Q+++ + +++ + P + I +NN M
Sbjct: 166 GAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKL--PCIFICENNRYGM 221
>pdb|3EXE|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXE|C Chain C, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXE|E Chain E, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXE|G Chain G, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
Length = 382
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 84/178 (47%), Gaps = 6/178 (3%)
Query: 127 VSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRF-SFYLTTIGEEAINIGSAAALSADDFIL 185
+++E +K Y M T++ M+ + +Q F G+EA +G A ++ D ++
Sbjct: 48 LTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGINPTDHLI 107
Query: 186 PQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQ 245
YR G RG ++++ ++ K KG+ +H +K N+ + + Q+P
Sbjct: 108 TAYRAHGFTFTRGLSVREILAELTGRKGGCAKGKGGSMHMYAK--NFYGGNGIVGAQVPL 165
Query: 246 AVGVAYSLKMEKKDACAVAYTGDGGTSE-QLWKPLSSSSVATMAGPLVPIYQNNFEAM 302
G+A + K KD + GDG ++ Q+++ + +++ + P + I +NN M
Sbjct: 166 GAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKL--PCIFICENNRYGM 221
>pdb|3EXI|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex With
The Subunit-Binding Domain (Sbd) Of E2p, But Sbd Cannot
Be Modeled Into The Electron Density
Length = 382
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 84/178 (47%), Gaps = 6/178 (3%)
Query: 127 VSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRF-SFYLTTIGEEAINIGSAAALSADDFIL 185
+++E +K Y M T++ M+ + +Q F G+EA +G A ++ D ++
Sbjct: 48 LTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGINPTDHLI 107
Query: 186 PQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQ 245
+R G RG ++++ ++ K KG+ +H +K N+ + + Q+P
Sbjct: 108 TAFRAHGFTFTRGLSVREILAELTGRKGGCAKGKGGSMHMYAK--NFYGGNGIVGAQVPL 165
Query: 246 AVGVAYSLKMEKKDACAVAYTGDGGTSE-QLWKPLSSSSVATMAGPLVPIYQNNFEAM 302
G+A + K KD + GDG ++ Q+++ + +++ + P + I +NN M
Sbjct: 166 GAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKL--PCIFICENNRYGM 221
>pdb|1NI4|A Chain A, Human Pyruvate Dehydrogenase
pdb|1NI4|C Chain C, Human Pyruvate Dehydrogenase
Length = 365
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 65/134 (48%), Gaps = 5/134 (3%)
Query: 166 GEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHY 225
G+EA +G A ++ D ++ YR G RG ++++ ++ K KG+ H
Sbjct: 71 GQEACCVGLEAGINPTDHLITAYRAHGFTFTRGLSVREILAELTGRKGGCAKGKGGSXHX 130
Query: 226 GSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSE-QLWKPLSSSSV 284
+K N+ + + Q+P G+A + K KD + GDG ++ Q+++ + +++
Sbjct: 131 YAK--NFYGGNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNXAAL 188
Query: 285 ATMAGPLVPIYQNN 298
+ P + I +NN
Sbjct: 189 WKL--PCIFICENN 200
>pdb|3T06|A Chain A, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
pdb|3T06|E Chain E, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
Length = 418
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 123 DFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQ 155
D Q+V E+ V SH+ TL+V+D + Y+ ++
Sbjct: 63 DRQEVINELFVTEASHLRTLRVLDLIFYQRMKK 95
>pdb|3U1H|A Chain A, Crystal Structure Of Ipmdh From The Last Common Ancestor
Of Bacillus
pdb|3U1H|B Chain B, Crystal Structure Of Ipmdh From The Last Common Ancestor
Of Bacillus
Length = 390
Score = 27.7 bits (60), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 28/49 (57%)
Query: 210 ANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKK 258
A+ + DG G P+H + + I++P+AT L A+ + YS +E++
Sbjct: 286 ASLSTDGLGLYEPVHGSAPDIAGKGIANPLATILSAAMMLRYSFGLEEE 334
>pdb|3KZ1|A Chain A, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
pdb|3KZ1|B Chain B, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
Length = 383
Score = 27.7 bits (60), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 123 DFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQ 155
D Q+V E+ V SH+ TL+V+D + Y+ ++
Sbjct: 26 DRQEVINELFVTEASHLRTLRVLDLIFYQRMKK 58
>pdb|1XCG|A Chain A, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|1XCG|E Chain E, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
Length = 368
Score = 27.7 bits (60), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 123 DFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQ 155
D Q+V E+ V SH+ TL+V+D + Y+ ++
Sbjct: 21 DRQEVINELFVTEASHLRTLRVLDLIFYQRMKK 53
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.132 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,798,583
Number of Sequences: 62578
Number of extensions: 337871
Number of successful extensions: 678
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 636
Number of HSP's gapped (non-prelim): 34
length of query: 317
length of database: 14,973,337
effective HSP length: 99
effective length of query: 218
effective length of database: 8,778,115
effective search space: 1913629070
effective search space used: 1913629070
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)