BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021087
(317 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q54M22|ODBA_DICDI 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial
OS=Dictyostelium discoideum GN=bkdA PE=3 SV=1
Length = 441
Score = 201 bits (510), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 94/193 (48%), Positives = 129/193 (66%), Gaps = 1/193 (0%)
Query: 106 VPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTI 165
+PC+ ++D G + K SKE +KMY+ M+TL VMDS+LY+ QRQGR SFY+T+
Sbjct: 64 IPCYTIMDQEGVVSKPDQDPNFSKEEVIKMYTTMLTLNVMDSILYDVQRQGRISFYMTSF 123
Query: 166 GEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHY 225
GEEAI+IGSAAAL D I QYRE GV +WRG+T+ NQ N+ D GKGRQMP+H+
Sbjct: 124 GEEAIHIGSAAALEMSDTIFAQYRETGVFMWRGFTINDIINQCCTNEHDLGKGRQMPMHF 183
Query: 226 GSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLSSSSVA 285
GS+K+N TISSP+ TQLPQAVG +Y+ K+ + C + Y G+G SE + + + A
Sbjct: 184 GSRKINLQTISSPLTTQLPQAVGSSYAQKLAGEKNCTIVYFGEGAASEGDFHA-AMNFAA 242
Query: 286 TMAGPLVPIYQNN 298
++ P + +NN
Sbjct: 243 ALSTPTIFFCRNN 255
>sp|O45924|ODBA_CAEEL 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial
OS=Caenorhabditis elegans GN=Y39E4A.3 PE=1 SV=2
Length = 431
Score = 198 bits (504), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 96/212 (45%), Positives = 136/212 (64%), Gaps = 2/212 (0%)
Query: 88 KVGYTSEMRFIPESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDS 147
K +T ++ + +P +RV + G++I S ++ ++KMY M L +MD
Sbjct: 41 KAAFTEKLEIVNADDTPALPIYRVTNAVGDVIDKSQDPNFDEQTSLKMYKTMTQLNIMDR 100
Query: 148 VLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQ 207
+LY++QRQGR SFY+T+ GEE ++GSAAAL D I QYRE GVLLWRGYT++ F NQ
Sbjct: 101 ILYDSQRQGRISFYMTSFGEEGNHVGSAAALEPQDLIYGQYREAGVLLWRGYTMENFMNQ 160
Query: 208 VFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEK-KDACAVAYT 266
+ N D GKGRQMP+H+G+K+ N++TISSP+ TQLPQAVG AY+ K +K + AV Y
Sbjct: 161 CYGNADDLGKGRQMPMHFGTKERNFVTISSPLTTQLPQAVGSAYAFKQQKDNNRIAVVYF 220
Query: 267 GDGGTSEQLWKPLSSSSVATMAGPLVPIYQNN 298
GDG SE + + AT+ P++ +NN
Sbjct: 221 GDGAASEGD-AHAAFNFAATLKCPIIFFCRNN 251
>sp|Q8HXY4|ODBA_MACFA 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial
OS=Macaca fascicularis GN=BCKDHA PE=2 SV=1
Length = 445
Score = 186 bits (472), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 104/252 (41%), Positives = 145/252 (57%), Gaps = 14/252 (5%)
Query: 52 LFSPG-----RSESTVAANQLDSLSSSDSDDDHQVLDFPGGKVGYTSEMRFIPESSEKRV 106
L+ PG RS Q SL DD Q FPG + ++ FI + +
Sbjct: 25 LWRPGARGLARSHPHRQQQQFSSL-----DDKPQ---FPGASAEFIDKLEFIQPNVISGI 76
Query: 107 PCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIG 166
P +RV+D G++I S+ + KE +K+Y M L MD +LYE+QRQGR SFY+T G
Sbjct: 77 PIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNYG 136
Query: 167 EEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYG 226
EE ++GSAAAL D + QYRE GVL++R Y L+ F Q + N +D GKGRQMP+HYG
Sbjct: 137 EEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYG 196
Query: 227 SKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLSSSSVAT 286
K+ +++TISSP+ATQ+PQAVG AY+ K + + Y G+G SE + AT
Sbjct: 197 CKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGD-AHAGFNFAAT 255
Query: 287 MAGPLVPIYQNN 298
+ P++ +NN
Sbjct: 256 LECPIIFFCRNN 267
>sp|A5A6H9|ODBA_PANTR 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Pan
troglodytes GN=BCKDHA PE=2 SV=1
Length = 445
Score = 185 bits (470), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 101/242 (41%), Positives = 141/242 (58%), Gaps = 9/242 (3%)
Query: 57 RSESTVAANQLDSLSSSDSDDDHQVLDFPGGKVGYTSEMRFIPESSEKRVPCFRVLDDNG 116
RS Q SL DD Q FPG + ++ FI + +P +RV+D G
Sbjct: 35 RSHPRRQQQQFSSL-----DDKPQ---FPGASAEFIDKLEFIQPNVISGIPIYRVMDRQG 86
Query: 117 ELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAA 176
++I S+ + KE +K+Y M L MD +LYE+QRQGR SFY+T GEE ++GSAA
Sbjct: 87 QIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTHVGSAA 146
Query: 177 ALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITIS 236
AL D + QYRE GVL++R Y L+ F Q + N +D GKGRQMP+HYG K+ +++TIS
Sbjct: 147 ALDNTDLVFGQYREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTIS 206
Query: 237 SPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQ 296
SP+ATQ+PQAVG AY+ K + + Y G+G SE + AT+ P++ +
Sbjct: 207 SPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGD-AHAGFNFAATLECPIIFFCR 265
Query: 297 NN 298
NN
Sbjct: 266 NN 267
>sp|P12694|ODBA_HUMAN 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Homo
sapiens GN=BCKDHA PE=1 SV=2
Length = 445
Score = 185 bits (470), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 93/215 (43%), Positives = 133/215 (61%), Gaps = 1/215 (0%)
Query: 84 FPGGKVGYTSEMRFIPESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQ 143
FPG + ++ FI + +P +RV+D G++I S+ + KE +K+Y M L
Sbjct: 54 FPGASAEFIDKLEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLN 113
Query: 144 VMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQ 203
MD +LYE+QRQGR SFY+T GEE ++GSAAAL D + QYRE GVL++R Y L+
Sbjct: 114 TMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLEL 173
Query: 204 FANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAV 263
F Q + N +D GKGRQMP+HYG K+ +++TISSP+ATQ+PQAVG AY+ K + +
Sbjct: 174 FMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVI 233
Query: 264 AYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNN 298
Y G+G SE + AT+ P++ +NN
Sbjct: 234 CYFGEGAASEGD-AHAGFNFAATLECPIIFFCRNN 267
>sp|P11960|ODBA_RAT 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial
(Fragment) OS=Rattus norvegicus GN=Bckdha PE=1 SV=1
Length = 441
Score = 184 bits (467), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 92/215 (42%), Positives = 133/215 (61%), Gaps = 1/215 (0%)
Query: 84 FPGGKVGYTSEMRFIPESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQ 143
FPG + ++ FI + +P +RV+D G++I S+ + +E +K+Y M L
Sbjct: 50 FPGASAEFVDKLEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPQEEVLKLYRSMTLLN 109
Query: 144 VMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQ 203
MD +LYE+QRQGR SFY+T GEE ++GSAAAL D + QYRE GVL++R Y L+
Sbjct: 110 TMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALERTDLVFGQYREAGVLMYRDYPLEL 169
Query: 204 FANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAV 263
F Q + N +D GKGRQMP+HYG K+ +++TISSP+ATQ+PQAVG AY+ K + +
Sbjct: 170 FMAQCYGNVSDPGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANQIVI 229
Query: 264 AYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNN 298
Y G+G SE + AT+ P++ +NN
Sbjct: 230 CYFGEGAASEGDAH-AGFNFAATLECPIIFFCRNN 263
>sp|P50136|ODBA_MOUSE 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Mus
musculus GN=Bckdha PE=1 SV=1
Length = 442
Score = 182 bits (462), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 91/215 (42%), Positives = 132/215 (61%), Gaps = 1/215 (0%)
Query: 84 FPGGKVGYTSEMRFIPESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQ 143
FPG + ++ FI + +P +RV+D G++I S+ + +E +K Y M L
Sbjct: 51 FPGASAEFVDKLEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPQEEVLKFYRSMTLLN 110
Query: 144 VMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQ 203
MD +LYE+QR+GR SFY+T GEE ++GSAAAL D + QYRE GVL++R Y L+
Sbjct: 111 TMDRILYESQREGRISFYMTNYGEEGTHVGSAAALERTDLVFGQYREAGVLMYRDYPLEL 170
Query: 204 FANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAV 263
F +Q + N D GKGRQMP+HYG K+ +++TISSP+ATQ+PQAVG AY+ K + +
Sbjct: 171 FMSQCYGNVNDPGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRIVI 230
Query: 264 AYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNN 298
Y G+G SE + AT+ P++ +NN
Sbjct: 231 CYFGEGAASEGD-AHAGFNFAATLECPIIFFCRNN 264
>sp|P11178|ODBA_BOVIN 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Bos
taurus GN=BCKDHA PE=2 SV=1
Length = 455
Score = 181 bits (460), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 91/215 (42%), Positives = 132/215 (61%), Gaps = 1/215 (0%)
Query: 84 FPGGKVGYTSEMRFIPESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQ 143
FPG + ++ FI + +P +RV+D G++I S+ + +E +K Y M L
Sbjct: 64 FPGASAEFIDKLEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPQEKVLKFYKSMTLLN 123
Query: 144 VMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQ 203
MD +LYE+QRQGR SFY+T GEE ++GSAAAL D + QYRE GVL++R Y L+
Sbjct: 124 TMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALDDTDLVFGQYREAGVLMYRDYPLEL 183
Query: 204 FANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAV 263
F Q + N +D GKGRQMP+HYG ++ +++TISSP+ATQ+PQAVG AY+ K + +
Sbjct: 184 FMAQCYGNVSDLGKGRQMPVHYGCRERHFVTISSPLATQIPQAVGAAYAAKRANANRVVI 243
Query: 264 AYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNN 298
Y G+G SE + AT+ P++ +NN
Sbjct: 244 CYFGEGAASEGD-AHAGFNFAATLECPIIFFCRNN 277
>sp|Q9I1M2|ODBA_PSEAE 2-oxoisovalerate dehydrogenase subunit alpha OS=Pseudomonas
aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 /
LMG 12228) GN=bkdA1 PE=3 SV=1
Length = 410
Score = 117 bits (294), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 66/174 (37%), Positives = 97/174 (55%), Gaps = 1/174 (0%)
Query: 100 ESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFS 159
E+S+ RVLDD+G + G Q+S E ++ M+ ++ D+ + AQRQ + S
Sbjct: 46 ETSDLAYSLVRVLDDDGHAV-GPWNPQLSNEQLLRGMRAMLKTRLFDARMLTAQRQKKLS 104
Query: 160 FYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGR 219
FY+ +GEEAI AL D P YR+ G+L+ R Y L Q+ +N+AD KGR
Sbjct: 105 FYMQCLGEEAIATAHTLALRDGDMCFPTYRQQGILITREYPLVDMICQLLSNEADPLKGR 164
Query: 220 QMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSE 273
Q+PI Y SK+ + +IS +ATQ QAVG + ++ A A+ GDG T+E
Sbjct: 165 QLPIMYSSKEAGFFSISGNLATQFIQAVGWGMASAIKGDTRIASAWIGDGATAE 218
>sp|Q72GU1|ODBA_THET2 2-oxoisovalerate dehydrogenase subunit alpha OS=Thermus
thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
GN=TT_C1757 PE=3 SV=1
Length = 367
Score = 116 bits (291), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 75/214 (35%), Positives = 110/214 (51%), Gaps = 9/214 (4%)
Query: 96 RFIPESSEKRVPCFRVLDDNGELIKGSDFQ-QVSKEVAVKMYSHMVTLQVMDSVLYEAQR 154
RF P + E R++ + GE + DF + E ++Y M+ +++D R
Sbjct: 7 RFEPFTEEP----IRLIGEEGEWL--GDFPLDLEGEKLRRLYRDMLAARMLDERYTILIR 60
Query: 155 QGRFSFYLTTIGEEAINIGSAAALSAD-DFILPQYREPGVLLWRGYTLQQFANQVFANKA 213
G+ SF G EA + A A+ D++ P YR+ G+ L G L++ Q+ A KA
Sbjct: 61 TGKTSFIAPAAGHEAAQVAIAHAIRPGFDWVFPYYRDHGLALALGIPLKELFGQMLATKA 120
Query: 214 DDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSE 273
D KGRQMP H GSK LN+ T++SPIA+ +P A G A S+K+ + AV GDG TSE
Sbjct: 121 DPNKGRQMPEHPGSKALNFFTVASPIASHVPPAAGAAISMKLLRTGQVAVCTFGDGATSE 180
Query: 274 QLWKPLSSSSVATMAGPLVPIYQNNFEAMVLLLR 307
W + A P V + +NNF A+ + R
Sbjct: 181 GDWY-AGINFAAVQGAPAVFVCENNFYAISVDYR 213
>sp|Q5SLR4|ODBA_THET8 2-oxoisovalerate dehydrogenase subunit alpha OS=Thermus
thermophilus (strain HB8 / ATCC 27634 / DSM 579)
GN=TTHA0229 PE=1 SV=1
Length = 367
Score = 116 bits (291), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 72/200 (36%), Positives = 105/200 (52%), Gaps = 5/200 (2%)
Query: 110 RVLDDNGELIKGSDFQ-QVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEE 168
R++ + GE + DF + E ++Y M+ +++D R G+ SF G E
Sbjct: 17 RLIGEEGEWL--GDFPLDLEGEKLRRLYRDMLAARMLDERYTILIRTGKTSFIAPAAGHE 74
Query: 169 AINIGSAAALSAD-DFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGS 227
A + A A+ D++ P YR+ G+ L G L++ Q+ A KAD KGRQMP H GS
Sbjct: 75 AAQVAIAHAIRPGFDWVFPYYRDHGLALALGIPLKELLGQMLATKADPNKGRQMPEHPGS 134
Query: 228 KKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLSSSSVATM 287
K LN+ T++SPIA+ +P A G A S+K+ + AV GDG TSE W + A
Sbjct: 135 KALNFFTVASPIASHVPPAAGAAISMKLLRTGQVAVCTFGDGATSEGDWY-AGINFAAVQ 193
Query: 288 AGPLVPIYQNNFEAMVLLLR 307
P V I +NNF A+ + R
Sbjct: 194 GAPAVFIAENNFYAISVDYR 213
>sp|P09060|ODBA_PSEPU 2-oxoisovalerate dehydrogenase subunit alpha OS=Pseudomonas putida
GN=bkdA1 PE=1 SV=2
Length = 410
Score = 110 bits (276), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 60/164 (36%), Positives = 95/164 (57%), Gaps = 1/164 (0%)
Query: 110 RVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEA 169
RVLD+ G+ +G + + ++ + M+ ++ DS + AQRQ + SFY+ ++GEEA
Sbjct: 56 RVLDEQGD-AQGPWAEDIDPQILRQGMRAMLKTRIFDSRMVVAQRQKKMSFYMQSLGEEA 114
Query: 170 INIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKK 229
I G A AL+ D P YR+ +L+ R +L + Q+ +N+ D KGRQ+PI Y ++
Sbjct: 115 IGSGQALALNRTDMCFPTYRQQSILMARDVSLVEMICQLLSNERDPLKGRQLPIMYSVRE 174
Query: 230 LNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSE 273
+ TIS +ATQ QAVG A + ++ A A+ GDG T+E
Sbjct: 175 AGFFTISGNLATQFVQAVGWAMASAIKGDTKIASAWIGDGATAE 218
>sp|P37940|ODBA_BACSU 2-oxoisovalerate dehydrogenase subunit alpha OS=Bacillus subtilis
(strain 168) GN=bfmBAA PE=1 SV=1
Length = 330
Score = 108 bits (271), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 62/174 (35%), Positives = 101/174 (58%), Gaps = 3/174 (1%)
Query: 127 VSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSAD-DFIL 185
++ + AV MY M+ + +D ++ R G+ F ++ G+EA +G+A AL + D++L
Sbjct: 11 LTDQEAVDMYRTMLLARKIDERMWLLNRSGKIPFVISCQGQEAAQVGAAFALDREMDYVL 70
Query: 186 PQYREPGVLLWRGYTLQQFANQVFANKAD-DGKGRQMPIHYGSKKLNYITISSPIATQLP 244
P YR+ GV+L G T + FA AD + GRQMP H+G KK +T SSP+ TQ+P
Sbjct: 71 PYYRDMGVVLAFGMTAKDLMMSGFAKAADPNSGGRQMPGHFGQKKNRIVTGSSPVTTQVP 130
Query: 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNN 298
AVG+A + +MEKKD A G+G +++ + ++ A P++ + +NN
Sbjct: 131 HAVGIALAGRMEKKDIAAFVTFGEGSSNQGDFHE-GANFAAVHKLPVIFMCENN 183
>sp|P60090|ODPA_STAAW Pyruvate dehydrogenase E1 component subunit alpha OS=Staphylococcus
aureus (strain MW2) GN=pdhA PE=3 SV=1
Length = 370
Score = 99.0 bits (245), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 61/199 (30%), Positives = 101/199 (50%), Gaps = 12/199 (6%)
Query: 101 SSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSF 160
++ + ++LD+NG ++ ++ E V++ MV +++D RQGR F
Sbjct: 17 DTQSKFEMVQILDENGNVVNEDLVPDLTDEQLVELMERMVWTRILDQRSISLNRQGRLGF 76
Query: 161 YLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQ 220
Y T G+EA + S AL +D+ILP YR+ ++W G L + F KG Q
Sbjct: 77 YAPTAGQEASQLASQYALEKEDYILPGYRDVPQIIWHGLPL----TEAFLFSRGHFKGNQ 132
Query: 221 MPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSE-QLWKPL 279
P + +N ++ I Q QA GVA++LK K+A A+ YTGDGG+S+ ++ +
Sbjct: 133 FP-----EGVNALSPQIIIGAQYIQAAGVAFALKKRGKNAVAITYTGDGGSSQGDFYEGI 187
Query: 280 SSSSVATMAGPLVPIYQNN 298
+ + A P + + QNN
Sbjct: 188 NFA--AAYKAPAIFVIQNN 204
>sp|Q6GAC1|ODPA_STAAS Pyruvate dehydrogenase E1 component subunit alpha OS=Staphylococcus
aureus (strain MSSA476) GN=pdhA PE=3 SV=1
Length = 370
Score = 99.0 bits (245), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 61/199 (30%), Positives = 101/199 (50%), Gaps = 12/199 (6%)
Query: 101 SSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSF 160
++ + ++LD+NG ++ ++ E V++ MV +++D RQGR F
Sbjct: 17 DTQSKFEMVQILDENGNVVNEDLVPDLTDEQLVELMERMVWTRILDQRSISLNRQGRLGF 76
Query: 161 YLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQ 220
Y T G+EA + S AL +D+ILP YR+ ++W G L + F KG Q
Sbjct: 77 YAPTAGQEASQLASQYALEKEDYILPGYRDVPQIIWHGLPL----TEAFLFSRGHFKGNQ 132
Query: 221 MPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSE-QLWKPL 279
P + +N ++ I Q QA GVA++LK K+A A+ YTGDGG+S+ ++ +
Sbjct: 133 FP-----EGVNALSPQIIIGAQYIQAAGVAFALKKRGKNAVAITYTGDGGSSQGDFYEGI 187
Query: 280 SSSSVATMAGPLVPIYQNN 298
+ + A P + + QNN
Sbjct: 188 NFA--AAYKAPAIFVIQNN 204
>sp|Q820A6|ODPA_STAAN Pyruvate dehydrogenase E1 component subunit alpha OS=Staphylococcus
aureus (strain N315) GN=pdhA PE=1 SV=1
Length = 370
Score = 99.0 bits (245), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 61/199 (30%), Positives = 101/199 (50%), Gaps = 12/199 (6%)
Query: 101 SSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSF 160
++ + ++LD+NG ++ ++ E V++ MV +++D RQGR F
Sbjct: 17 DTQSKFEMVQILDENGNVVNEDLVPDLTDEQLVELMERMVWTRILDQRSISLNRQGRLGF 76
Query: 161 YLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQ 220
Y T G+EA + S AL +D+ILP YR+ ++W G L + F KG Q
Sbjct: 77 YAPTAGQEASQLASQYALEKEDYILPGYRDVPQIIWHGLPL----TEAFLFSRGHFKGNQ 132
Query: 221 MPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSE-QLWKPL 279
P + +N ++ I Q QA GVA++LK K+A A+ YTGDGG+S+ ++ +
Sbjct: 133 FP-----EGVNALSPQIIIGAQYIQAAGVAFALKKRGKNAVAITYTGDGGSSQGDFYEGI 187
Query: 280 SSSSVATMAGPLVPIYQNN 298
+ + A P + + QNN
Sbjct: 188 NFA--AAYKAPAIFVIQNN 204
>sp|P60089|ODPA_STAAM Pyruvate dehydrogenase E1 component subunit alpha OS=Staphylococcus
aureus (strain Mu50 / ATCC 700699) GN=pdhA PE=1 SV=1
Length = 370
Score = 99.0 bits (245), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 61/199 (30%), Positives = 101/199 (50%), Gaps = 12/199 (6%)
Query: 101 SSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSF 160
++ + ++LD+NG ++ ++ E V++ MV +++D RQGR F
Sbjct: 17 DTQSKFEMVQILDENGNVVNEDLVPDLTDEQLVELMERMVWTRILDQRSISLNRQGRLGF 76
Query: 161 YLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQ 220
Y T G+EA + S AL +D+ILP YR+ ++W G L + F KG Q
Sbjct: 77 YAPTAGQEASQLASQYALEKEDYILPGYRDVPQIIWHGLPL----TEAFLFSRGHFKGNQ 132
Query: 221 MPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSE-QLWKPL 279
P + +N ++ I Q QA GVA++LK K+A A+ YTGDGG+S+ ++ +
Sbjct: 133 FP-----EGVNALSPQIIIGAQYIQAAGVAFALKKRGKNAVAITYTGDGGSSQGDFYEGI 187
Query: 280 SSSSVATMAGPLVPIYQNN 298
+ + A P + + QNN
Sbjct: 188 NFA--AAYKAPAIFVIQNN 204
>sp|Q5HGZ1|ODPA_STAAC Pyruvate dehydrogenase E1 component subunit alpha OS=Staphylococcus
aureus (strain COL) GN=pdhA PE=3 SV=1
Length = 370
Score = 99.0 bits (245), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 61/199 (30%), Positives = 101/199 (50%), Gaps = 12/199 (6%)
Query: 101 SSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSF 160
++ + ++LD+NG ++ ++ E V++ MV +++D RQGR F
Sbjct: 17 DTQSKFEMVQILDENGNVVNEDLVPDLTDEQLVELMERMVWTRILDQRSISLNRQGRLGF 76
Query: 161 YLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQ 220
Y T G+EA + S AL +D+ILP YR+ ++W G L + F KG Q
Sbjct: 77 YAPTAGQEASQLASQYALEKEDYILPGYRDVPQIIWHGLPL----TEAFLFSRGHFKGNQ 132
Query: 221 MPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSE-QLWKPL 279
P + +N ++ I Q QA GVA++LK K+A A+ YTGDGG+S+ ++ +
Sbjct: 133 FP-----EGVNALSPQIIIGAQYIQAAGVAFALKKRGKNAVAITYTGDGGSSQGDFYEGI 187
Query: 280 SSSSVATMAGPLVPIYQNN 298
+ + A P + + QNN
Sbjct: 188 NFA--AAYKAPAIFVIQNN 204
>sp|Q6GHZ2|ODPA_STAAR Pyruvate dehydrogenase E1 component subunit alpha OS=Staphylococcus
aureus (strain MRSA252) GN=pdhA PE=3 SV=1
Length = 370
Score = 97.1 bits (240), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 100/199 (50%), Gaps = 12/199 (6%)
Query: 101 SSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSF 160
++ + ++LD+NG ++ ++ E V++ MV +++D RQGR F
Sbjct: 17 DTQSKFEMVQILDENGNVVNEDLVPDLTDEQLVELMERMVWTRILDQRSISLNRQGRLGF 76
Query: 161 YLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQ 220
Y T G+EA + S AL +D+ILP YR+ ++W G L + F KG Q
Sbjct: 77 YAPTAGQEASQLASQYALEKEDYILPGYRDVPQIIWHGLPL----TEAFLFSRGHFKGNQ 132
Query: 221 MPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSE-QLWKPL 279
P + +N ++ I Q Q GVA++LK K+A A+ YTGDGG+S+ ++ +
Sbjct: 133 FP-----EGVNALSPQIIIGAQYIQTAGVAFALKKRGKNAVAITYTGDGGSSQGDFYEGI 187
Query: 280 SSSSVATMAGPLVPIYQNN 298
+ + A P + + QNN
Sbjct: 188 NFA--AAYKAPAIFVIQNN 204
>sp|Q8CPN3|ODPA_STAES Pyruvate dehydrogenase E1 component subunit alpha OS=Staphylococcus
epidermidis (strain ATCC 12228) GN=pdhA PE=3 SV=1
Length = 370
Score = 96.3 bits (238), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 99/199 (49%), Gaps = 12/199 (6%)
Query: 101 SSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSF 160
++ + ++LD++G ++ ++ E V++ MV +++D RQGR F
Sbjct: 17 ETQSKFEMVQILDEDGNVVNEDLVPDLTDEQLVELMERMVWTRILDQRSISLNRQGRLGF 76
Query: 161 YLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQ 220
Y T G+EA + S AL ++DFILP YR+ ++W G L F KG Q
Sbjct: 77 YAPTAGQEASQLASQYALESEDFILPGYRDVPQIIWHGLPL----TDAFLFSRGHFKGNQ 132
Query: 221 MPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSE-QLWKPL 279
P + +N ++ I Q Q GVA+ LK K+A A+ YTGDGG+S+ ++ +
Sbjct: 133 FP-----EGVNALSPQIIIGAQYIQTAGVAFGLKKRGKNAVAITYTGDGGSSQGDFYEGI 187
Query: 280 SSSSVATMAGPLVPIYQNN 298
+ +S P + + QNN
Sbjct: 188 NFASA--YKAPAIFVIQNN 204
>sp|Q5HQ76|ODPA_STAEQ Pyruvate dehydrogenase E1 component subunit alpha OS=Staphylococcus
epidermidis (strain ATCC 35984 / RP62A) GN=pdhA PE=3
SV=1
Length = 370
Score = 96.3 bits (238), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 99/199 (49%), Gaps = 12/199 (6%)
Query: 101 SSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSF 160
++ + ++LD++G ++ ++ E V++ MV +++D RQGR F
Sbjct: 17 ETQSKFEMVQILDEDGNVVNEDLVPDLTDEQLVELMERMVWTRILDQRSISLNRQGRLGF 76
Query: 161 YLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQ 220
Y T G+EA + S AL ++DFILP YR+ ++W G L F KG Q
Sbjct: 77 YAPTAGQEASQLASQYALESEDFILPGYRDVPQIIWHGLPL----TDAFLFSRGHFKGNQ 132
Query: 221 MPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSE-QLWKPL 279
P + +N ++ I Q Q GVA+ LK K+A A+ YTGDGG+S+ ++ +
Sbjct: 133 FP-----EGVNALSPQIIIGAQYIQTAGVAFGLKKRGKNAVAITYTGDGGSSQGDFYEGI 187
Query: 280 SSSSVATMAGPLVPIYQNN 298
+ +S P + + QNN
Sbjct: 188 NFASA--YKAPAIFVIQNN 204
>sp|P21881|ODPA_BACSU Pyruvate dehydrogenase E1 component subunit alpha OS=Bacillus
subtilis (strain 168) GN=pdhA PE=1 SV=3
Length = 371
Score = 95.1 bits (235), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 98/200 (49%), Gaps = 12/200 (6%)
Query: 100 ESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFS 159
++ +K+ F++L++ GE++ + ++ + ++ MV +V+D RQGR
Sbjct: 17 DAIKKQFETFQILNEKGEVVNEAAMPDLTDDQLKELMRRMVFTRVLDQRSISLNRQGRLG 76
Query: 160 FYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGR 219
FY T G+EA I + AL +DF+LP YR+ L+W G L Q F +G
Sbjct: 77 FYAPTAGQEASQIATHFALEKEDFVLPGYRDVPQLIWHGLPLY----QAFLFSRGHFRGN 132
Query: 220 QMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSE-QLWKP 278
QMP +N ++ I Q Q GVA LK K A A+ YTGDGG S+ ++
Sbjct: 133 QMP-----DDVNALSPQIIIGAQYIQTAGVALGLKKRGKKAVAITYTGDGGASQGDFYEG 187
Query: 279 LSSSSVATMAGPLVPIYQNN 298
++ + P + + QNN
Sbjct: 188 INFA--GAYKAPAIFVVQNN 205
>sp|P21873|ODPA_GEOSE Pyruvate dehydrogenase E1 component subunit alpha OS=Geobacillus
stearothermophilus GN=pdhA PE=1 SV=2
Length = 369
Score = 94.4 bits (233), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/200 (33%), Positives = 99/200 (49%), Gaps = 12/200 (6%)
Query: 100 ESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFS 159
E ++ P F++L++ GE++ ++S E ++ MV +++D RQGR
Sbjct: 15 EKVAEQFPTFQILNEEGEVVNEEAMPELSDEQLKELMRRMVYTRILDQRSISLNRQGRLG 74
Query: 160 FYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGR 219
FY T G+EA I S AL +DFILP YR+ ++W G L Q F G
Sbjct: 75 FYAPTAGQEASQIASHFALEKEDFILPGYRDVPQIIWHGLPL----YQAFLFSRGHFHGN 130
Query: 220 QMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSE-QLWKP 278
Q+P + +N + I Q QA GVA LKM K A A+ YTGDGGTS+ ++
Sbjct: 131 QIP-----EGVNVLPPQIIIGAQYIQAAGVALGLKMRGKKAVAITYTGDGGTSQGDFYEG 185
Query: 279 LSSSSVATMAGPLVPIYQNN 298
++ + P + + QNN
Sbjct: 186 INFA--GAFKAPAIFVVQNN 203
>sp|Q4MTG0|ODPA_BACCE Pyruvate dehydrogenase E1 component subunit alpha OS=Bacillus
cereus GN=pdhA PE=1 SV=3
Length = 371
Score = 88.2 bits (217), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 95/192 (49%), Gaps = 12/192 (6%)
Query: 108 CFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGE 167
++L++ GE++ + ++S + ++ MV +V+D RQGR FY T G+
Sbjct: 25 TLQILNEKGEVVNEAAMPELSDDQLKELMRRMVYTRVLDQRSISLNRQGRLGFYAPTAGQ 84
Query: 168 EAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGS 227
EA + S AL A+DFILP YR+ L+W G L Q F G QMP
Sbjct: 85 EASQLASHFALEAEDFILPGYRDVPQLVWHGLPLY----QAFLFSRGHFMGNQMP----- 135
Query: 228 KKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSE-QLWKPLSSSSVAT 286
+ +N + I Q+ Q GVA +K+ K + A+ YTGDGG S+ ++ ++ +
Sbjct: 136 ENVNALAPQIIIGAQIIQTAGVALGMKLRGKKSVAITYTGDGGASQGDFYEGMNFA--GA 193
Query: 287 MAGPLVPIYQNN 298
P + + QNN
Sbjct: 194 FKAPAIFVVQNN 205
>sp|O06161|BKDA_MYCTU 3-methyl-2-oxobutanoate dehydrogenase subunit alpha
OS=Mycobacterium tuberculosis GN=bkdA PE=1 SV=1
Length = 367
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 85/180 (47%), Gaps = 22/180 (12%)
Query: 125 QQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFI 184
+ + +E +Y MV + +D+ QRQG + Y G+EA +G+AA L D++
Sbjct: 37 RDLPEETLRWLYEMMVVTRELDTEFVNLQRQGELALYTPCRGQEAAQVGAAACLRKTDWL 96
Query: 185 LPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYIT-----ISSPI 239
PQYRE GV L RG G + H G L + T +S PI
Sbjct: 97 FPQYRELGVYLVRGIPPGHV-----------GVAWRGTWHGG---LQFTTKCCAPMSVPI 142
Query: 240 ATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSE-QLWKPLSSSSVATMAGPLVPIYQNN 298
TQ AVG A + + +D+ VA+ GDG TSE + + L+ ++V T P V QNN
Sbjct: 143 GTQTLHAVGAAMAAQRLDEDSVTVAFLGDGATSEGDVHEALNFAAVFTT--PCVFYVQNN 200
>sp|P47516|ODPA_MYCGE Pyruvate dehydrogenase E1 component subunit alpha OS=Mycoplasma
genitalium (strain ATCC 33530 / G-37 / NCTC 10195)
GN=pdhA PE=3 SV=1
Length = 358
Score = 74.7 bits (182), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 92/185 (49%), Gaps = 12/185 (6%)
Query: 103 EKRVPC--FRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSF 160
+ +VP ++V D+ G+LI + ++ E Y M ++MD + QR G+
Sbjct: 6 KNKVPTTLYQVYDNEGKLIDPNHKITLTDEQLKHAYYLMNLSRMMDKKMLVWQRAGKMLN 65
Query: 161 YLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQ 220
+ +GEEA+ +G L+ +D++ P +R ++L+RG +Q N+ KG Q
Sbjct: 66 FAPNLGEEALQVGMGLGLNENDWVCPTFRSGALMLYRGVKPEQLLLYWNGNE----KGSQ 121
Query: 221 MPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSE-QLWKPL 279
+ Y + + I+ I Q A G+ Y L +K+ AV GDGGT+E + ++ +
Sbjct: 122 IDAKYKT-----LPINITIGAQYSHAAGLGYMLHYKKQPNVAVTMIGDGGTAEGEFYEAM 176
Query: 280 SSSSV 284
+ +S+
Sbjct: 177 NIASI 181
>sp|P35485|ODPA_ACHLA Pyruvate dehydrogenase E1 component subunit alpha (Fragment)
OS=Acholeplasma laidlawii GN=pdhA PE=4 SV=1
Length = 345
Score = 74.7 bits (182), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 91/187 (48%), Gaps = 12/187 (6%)
Query: 113 DDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINI 172
D NG+++ ++ KE +KMY V + D + QRQGR Y +G+EA I
Sbjct: 1 DQNGKVVNEKMEPKLPKETLLKMYKTAVLGRNADIKALQYQRQGRMLTYAPNMGQEAAQI 60
Query: 173 GSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNY 232
G AAA+ D+ P YRE LL+RG L+ VF + +G P + +
Sbjct: 61 GMAAAMEPQDWNSPMYRELNTLLYRGDKLE----NVFLYWYGNERGSIKP-----EGVKI 111
Query: 233 ITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSE-QLWKPLSSSSVATMAGPL 291
+ + I +Q A G+A + K+ K + GDGGT+ + ++ L+ + A+ P+
Sbjct: 112 LPTNIIIGSQSNIAAGLAMASKIRKTNEVTAFTIGDGGTAHGEFYEGLNFA--ASFKAPV 169
Query: 292 VPIYQNN 298
V + QNN
Sbjct: 170 VAVIQNN 176
>sp|P52901|ODPA1_ARATH Pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial
OS=Arabidopsis thaliana GN=E1 ALPHA PE=1 SV=2
Length = 389
Score = 71.6 bits (174), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 86/165 (52%), Gaps = 5/165 (3%)
Query: 139 MVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRG 198
M +++ LY+A+ F G+EA+ IG AA++ D I+ YR+ + L RG
Sbjct: 69 MRRMEIAADSLYKAKLIRGFCHLYD--GQEAVAIGMEAAITKKDAIITAYRDHCIFLGRG 126
Query: 199 YTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKK 258
+L + +++ +A KG+ +H+ K+ ++ + Q+P G+A++ K K+
Sbjct: 127 GSLHEVFSELMGRQAGCSKGKGGSMHFYKKESSFYGGHGIVGAQVPLGCGIAFAQKYNKE 186
Query: 259 DACAVAYTGDGGTSE-QLWKPLSSSSVATMAGPLVPIYQNNFEAM 302
+A A GDG ++ QL++ L+ S++ + P + + +NN M
Sbjct: 187 EAVTFALYGDGAANQGQLFEALNISALWDL--PAILVCENNHYGM 229
>sp|P75390|ODPA_MYCPN Pyruvate dehydrogenase E1 component subunit alpha OS=Mycoplasma
pneumoniae (strain ATCC 29342 / M129) GN=pdhA PE=3 SV=1
Length = 358
Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 90/185 (48%), Gaps = 12/185 (6%)
Query: 103 EKRVPC--FRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSF 160
+ +VP ++V D+ G+L+ + +S E + M ++MD + QR G+
Sbjct: 6 KNKVPTTLYQVYDNEGKLMDPNHKITLSNEQLKHAFYLMNLSRIMDKKMLVWQRAGKMLN 65
Query: 161 YLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQ 220
+ +GEEA+ +G L+ +D+ P +R ++L+RG +Q ++ N ++G +
Sbjct: 66 FAPNLGEEALQVGMGMGLNENDWFCPTFRSGALMLYRGVKPEQLL--LYWNGNENGSKIE 123
Query: 221 MPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSE-QLWKPL 279
K + I+ I Q A G+ Y L +K AV GDGGT+E + ++ +
Sbjct: 124 -------AKYKTLPINITIGAQYSHAAGLGYMLHYKKLPNVAVTMIGDGGTAEGEFYEAM 176
Query: 280 SSSSV 284
+ +S+
Sbjct: 177 NIASI 181
>sp|P52903|ODPA_SOLTU Pyruvate dehydrogenase E1 component subunit alpha, mitochondrial
OS=Solanum tuberosum PE=1 SV=1
Length = 391
Score = 66.2 bits (160), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 86/170 (50%), Gaps = 5/170 (2%)
Query: 134 KMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGV 193
K + M +++ LY+A+ F G+EA+ +G AA++ D I+ YR+ +
Sbjct: 66 KDMTEMRRMEIAADSLYKAKLIRGFCHLYD--GQEAVAVGMEAAITKKDCIITAYRDHCI 123
Query: 194 LLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSL 253
L RG TL + ++ + +G+ +H+ K+ + + Q+P +G+A++
Sbjct: 124 FLGRGGTLVEAFAELMGRRDGCSRGKGGSMHFYKKESGFYGGHGIVGAQVPLGIGLAFAQ 183
Query: 254 KMEKKDACAVAYTGDGGTSE-QLWKPLSSSSVATMAGPLVPIYQNNFEAM 302
K +K+D A GDG ++ QL++ L+ +++ + P + + +NN M
Sbjct: 184 KYKKEDYVTFAMYGDGAANQGQLFEALNMAALWDL--PAILVCENNHYGM 231
>sp|Q10489|ODPA_SCHPO Pyruvate dehydrogenase E1 component subunit alpha, mitochondrial
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=pda1 PE=1 SV=1
Length = 409
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/215 (24%), Positives = 101/215 (46%), Gaps = 20/215 (9%)
Query: 98 IPESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVK------MYSHMVTLQVMD---SV 148
+PE +K P LDD+ + +G S E+ V +Y MVT++ ++
Sbjct: 42 VPEEHDKPFPV--KLDDS--VFEGYKIDVPSTEIEVTKGELLGLYEKMVTIRRLELACDA 97
Query: 149 LYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQV 208
LY+A++ F +IG+EA+ G A++ DD I+ YR G RG +++ ++
Sbjct: 98 LYKAKKIRGFCH--LSIGQEAVAAGIEGAITLDDSIITSYRCHGFAYTRGLSIRSIIGEL 155
Query: 209 FANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGD 268
+ KG+ +H +K N+ + + Q+P G+ ++ K +K A GD
Sbjct: 156 MGRQCGASKGKGGSMHIFAK--NFYGGNGIVGAQIPLGAGIGFAQKYLEKPTTTFALYGD 213
Query: 269 GGTSEQLWKPLSSSSVATMAG-PLVPIYQNNFEAM 302
G +++ + + ++A + G P++ +NN M
Sbjct: 214 GASNQ--GQAFEAFNMAKLWGLPVIFACENNKYGM 246
>sp|P16387|ODPA_YEAST Pyruvate dehydrogenase E1 component subunit alpha, mitochondrial
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PDA1 PE=1 SV=2
Length = 420
Score = 62.8 bits (151), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 92/187 (49%), Gaps = 22/187 (11%)
Query: 126 QVSKEVAVKMYSHMVTLQVMD---SVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADD 182
+ SK ++MY MV ++ M+ LY+A++ F ++G+EAI +G A++ D
Sbjct: 75 ETSKATLLQMYKDMVIIRRMEMACDALYKAKKIRGFCH--LSVGQEAIAVGIENAITKLD 132
Query: 183 FILPQYREPGVLLWRGYTLQQFANQVFANKA--DDGKGRQM----PIHYGSKKLNYITIS 236
I+ YR G RG +++ ++ +A GKG M P YG +
Sbjct: 133 SIITSYRCHGFTFMRGASVKAVLAELMGRRAGVSYGKGGSMHLYAPGFYGGNGI------ 186
Query: 237 SPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSE-QLWKPLSSSSVATMAGPLVPIY 295
+ Q+P G+A++ + + +DAC+ GDG +++ Q+++ + + + + P+V
Sbjct: 187 --VGAQVPLGAGLAFAHQYKNEDACSFTLYGDGASNQGQVFESFNMAKLWNL--PVVFCC 242
Query: 296 QNNFEAM 302
+NN M
Sbjct: 243 ENNKYGM 249
>sp|Q54C70|ODPA_DICDI Pyruvate dehydrogenase E1 component subunit alpha, mitochondrial
OS=Dictyostelium discoideum GN=pdhA PE=1 SV=1
Length = 377
Score = 62.8 bits (151), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 91/185 (49%), Gaps = 10/185 (5%)
Query: 122 SDFQQVSKEVAVKMYSHMVTLQVMDSV---LYEAQRQGRFSFYLTTIGEEAINIGSAAAL 178
SD +K+ + ++ M + +++V LY+ + F T G+EA+ G +A+
Sbjct: 42 SDSTVTNKDELISFFTEMSRFRRLETVCDGLYKKKLIRGFCHLYT--GQEAVCAGLESAI 99
Query: 179 SADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSP 238
+ DD I+ YR+ +L RG T ++ ++ + KG+ +H +K N+ +
Sbjct: 100 TKDDHIITAYRDHTYMLSRGATPEEIFAELLMKETGCSKGKGGSMHMFTK--NFYGGNGI 157
Query: 239 IATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSE-QLWKPLSSSSVATMAGPLVPIYQN 297
+ Q P G+A++ K K +A GDG ++ QL++ + +S+ + P++ I +N
Sbjct: 158 VGAQCPLGAGIAFAQKYNKTGNVCLAMYGDGAANQGQLFEAFNMASLWKL--PVIFICEN 215
Query: 298 NFEAM 302
N M
Sbjct: 216 NKYGM 220
>sp|Q6Z5N4|ODPA1_ORYSJ Pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial
OS=Oryza sativa subsp. japonica GN=Os02g0739600 PE=2
SV=1
Length = 390
Score = 62.4 bits (150), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 81/167 (48%), Gaps = 5/167 (2%)
Query: 137 SHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLW 196
S M +++ LY+A+ F G+EA+ +G AA++ D I+ YR+ L
Sbjct: 68 SVMRRMEIAADSLYKAKLIRGFCHLYD--GQEAVAVGMEAAITRSDSIITAYRDHCTYLA 125
Query: 197 RGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKME 256
RG L ++ +A +G+ +H+ K N+ + Q+P G+A++ K
Sbjct: 126 RGGDLVSAFAELMGRQAGCSRGKGGSMHFYKKDANFYGGHGIVGAQVPLGCGLAFAQKYR 185
Query: 257 KKDACAVAYTGDGGTSE-QLWKPLSSSSVATMAGPLVPIYQNNFEAM 302
K++ A GDG ++ QL++ L+ S++ + P + + +NN M
Sbjct: 186 KEETATFALYGDGAANQGQLFEALNISALWKL--PAILVCENNHYGM 230
>sp|Q8H1Y0|ODPA2_ARATH Pyruvate dehydrogenase E1 component subunit alpha-2, mitochondrial
OS=Arabidopsis thaliana GN=IAR4 PE=1 SV=2
Length = 393
Score = 62.4 bits (150), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 80/167 (47%), Gaps = 5/167 (2%)
Query: 137 SHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLW 196
+ M +++ LY+A+ F G+EA+ +G AA++ D I+ YR+ +
Sbjct: 71 ARMRRMEIAADSLYKAKLIRGFCHLYD--GQEALAVGMEAAITKKDAIITSYRDHCTFIG 128
Query: 197 RGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKME 256
RG L +++ K G+ +H+ K ++ + Q+P G+A++ K
Sbjct: 129 RGGKLVDAFSELMGRKTGCSHGKGGSMHFYKKDASFYGGHGIVGAQIPLGCGLAFAQKYN 188
Query: 257 KKDACAVAYTGDGGTSE-QLWKPLSSSSVATMAGPLVPIYQNNFEAM 302
K +A A GDG ++ QL++ L+ S++ + P + + +NN M
Sbjct: 189 KDEAVTFALYGDGAANQGQLFEALNISALWDL--PAILVCENNHYGM 233
>sp|O13366|ODPA_KLULA Pyruvate dehydrogenase E1 component subunit alpha, mitochondrial
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=PDA1 PE=3
SV=2
Length = 412
Score = 62.0 bits (149), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 91/187 (48%), Gaps = 22/187 (11%)
Query: 126 QVSKEVAVKMYSHMVTLQVMD---SVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADD 182
Q +K ++MY M+ ++ M+ LY+A++ F +++G+EAI +G A++ D
Sbjct: 67 QTTKSNLLQMYKDMIIVRRMEMACDALYKAKKIRGFCH--SSVGQEAIAVGIENAITKRD 124
Query: 183 FILPQYREPGVLLWRGYTLQQFANQVFANKA--DDGKGRQM----PIHYGSKKLNYITIS 236
++ YR G RG +Q ++ + GKG M P YG +
Sbjct: 125 TVITSYRCHGFTYMRGAAVQAVLAELMGRRTGVSFGKGGSMHLYAPGFYGGNGI------ 178
Query: 237 SPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSE-QLWKPLSSSSVATMAGPLVPIY 295
+ Q+P G+A++ + + +DAC+ A GDG +++ Q+++ + + + + P V
Sbjct: 179 --VGAQVPLGAGLAFAHQYKHEDACSFALYGDGASNQGQVFESFNMAKLWNL--PAVFCC 234
Query: 296 QNNFEAM 302
+NN M
Sbjct: 235 ENNKYGM 241
>sp|P26267|ODPA_ASCSU Pyruvate dehydrogenase E1 component subunit alpha type I,
mitochondrial OS=Ascaris suum PE=1 SV=1
Length = 396
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 95/192 (49%), Gaps = 13/192 (6%)
Query: 117 ELIKGSDFQ-QVSKEVAVKMYSHMVTLQVMDSV---LYEAQRQGRFSFYLTTIGEEAINI 172
+L G D V+KE AV Y+ M+T++ M+S LY+ ++ F + G+EA +
Sbjct: 41 KLDSGPDINVHVTKEDAVHYYTQMLTIRRMESAAGNLYKEKKVRGFCHLYS--GQEACAV 98
Query: 173 GSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIH-YGSKKLN 231
G+ AA+ A D + YR G G ++ + ++ + G+ +H YG N
Sbjct: 99 GTKAAMDAGDAAVTAYRCHGWTYLSGSSVAKVLCELTGRITGNVYGKGGSMHMYGE---N 155
Query: 232 YITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSE-QLWKPLSSSSVATMAGP 290
+ + + Q P G+A+++K K+ + GDG T++ QL++ ++ + + + P
Sbjct: 156 FYGGNGIVGAQQPLGTGIAFAMKYRKEKNVCITMFGDGATNQGQLFESMNMAKLWDL--P 213
Query: 291 LVPIYQNNFEAM 302
++ + +NN M
Sbjct: 214 VLYVCENNGYGM 225
>sp|P52902|ODPA_PEA Pyruvate dehydrogenase E1 component subunit alpha, mitochondrial
OS=Pisum sativum PE=2 SV=1
Length = 397
Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 67/138 (48%), Gaps = 3/138 (2%)
Query: 166 GEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHY 225
G+EA+ +G A + D I+ YR+ L RG TL + ++ + KG+ +H+
Sbjct: 102 GQEAVAVGMEAGTTKKDCIITAYRDHCTFLGRGGTLLRVYAELMGRRDGCSKGKGGSMHF 161
Query: 226 GSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSE-QLWKPLSSSSV 284
K + + Q+P G+A+ K K ++ A GDG ++ QL++ L+ S++
Sbjct: 162 YKKDSGFYGGHGIVGAQVPLGCGLAFGQKYLKDESVTFALYGDGAANQGQLFEALNISAL 221
Query: 285 ATMAGPLVPIYQNNFEAM 302
+ P + + +NN M
Sbjct: 222 WDL--PAILVCENNHYGM 237
>sp|A7MB35|ODPA_BOVIN Pyruvate dehydrogenase E1 component subunit alpha, somatic form,
mitochondrial OS=Bos taurus GN=PDHA1 PE=2 SV=1
Length = 390
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 84/178 (47%), Gaps = 6/178 (3%)
Query: 127 VSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRF-SFYLTTIGEEAINIGSAAALSADDFIL 185
+++E +K Y M T++ M+ + +Q F G+EA +G A ++ D ++
Sbjct: 56 LTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGINPTDHLI 115
Query: 186 PQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQ 245
YR G RG ++++ ++ + KG+ +H +K N+ + + Q+P
Sbjct: 116 TAYRAHGFTFTRGLSVREILAELTGRRGGCAKGKGGSMHMYAK--NFYGGNGIVGAQVPL 173
Query: 246 AVGVAYSLKMEKKDACAVAYTGDGGTSE-QLWKPLSSSSVATMAGPLVPIYQNNFEAM 302
G+A + K KD + GDG ++ Q+++ + +++ + P + I +NN M
Sbjct: 174 GAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKL--PCIFICENNRYGM 229
>sp|Q654V6|ODPA2_ORYSJ Pyruvate dehydrogenase E1 component subunit alpha-2, mitochondrial
OS=Oryza sativa subsp. japonica GN=Os06g0246500 PE=2
SV=1
Length = 398
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 67/138 (48%), Gaps = 3/138 (2%)
Query: 166 GEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHY 225
G+EA+ +G AA + D I+ YR+ L RG L ++ + +G+ +H
Sbjct: 103 GQEAVAVGMEAATTRADAIITAYRDHCAYLARGGDLAALFAELMGRRGGCSRGKGGSMHL 162
Query: 226 GSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSE-QLWKPLSSSSV 284
K N+ + Q+P G+A++ + K+ A GDG ++ QL++ L+ +++
Sbjct: 163 YKKDANFYGGHGIVGAQVPLGCGLAFAQRYRKEAAVTFDLYGDGAANQGQLFEALNMAAL 222
Query: 285 ATMAGPLVPIYQNNFEAM 302
+ P+V + +NN M
Sbjct: 223 WKL--PVVLVCENNHYGM 238
>sp|O24457|ODPA3_ARATH Pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic
OS=Arabidopsis thaliana GN=PDH-E1 ALPHA PE=1 SV=1
Length = 428
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 91/184 (49%), Gaps = 10/184 (5%)
Query: 127 VSKEVAVKMYSHMVTLQVMDSVLYEAQRQGR-FSFYLTTIGEEAINIGSAAALSADDFIL 185
++KE +++Y M+ + + + + +G+ F F G+EA++ G L+ D ++
Sbjct: 79 ITKEEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLTKSDSVV 138
Query: 186 PQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQ 245
YR+ L +G + + +++F +G+ +H SK+ N + + I +P
Sbjct: 139 STYRDHVHALSKGVSARAVMSELFGKVTGCCRGQGGSMHMFSKEHNMLGGFAFIGEGIPV 198
Query: 246 AVGVAYSLKMEKK------DACAVAYTGDGGTSE-QLWKPLSSSSVATMAGPLVPIYQNN 298
A G A+S K ++ D VA+ GDG + Q ++ L+ +++ + P++ + +NN
Sbjct: 199 ATGAAFSSKYRREVLKQDCDDVTVAFFGDGTCNNGQFFECLNMAALYKL--PIIFVVENN 256
Query: 299 FEAM 302
A+
Sbjct: 257 LWAI 260
>sp|P52900|ODPA_SMIMA Pyruvate dehydrogenase E1 component subunit alpha, mitochondrial
(Fragment) OS=Sminthopsis macroura GN=PDHA PE=2 SV=1
Length = 363
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 85/178 (47%), Gaps = 6/178 (3%)
Query: 127 VSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRF-SFYLTTIGEEAINIGSAAALSADDFIL 185
+++E +K Y M T++ M+ + +Q F G+EA +G A ++ D ++
Sbjct: 29 LTREEGLKYYKIMQTVRRMELKADQLYKQKIIRGFCHLYDGQEACCMGLEAGINPTDHVI 88
Query: 186 PQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQ 245
YR G RG +++ ++ + KG+ +H +K N+ + + Q+P
Sbjct: 89 TAYRAHGFTYTRGLPVREILAELTGRRGGCAKGKGGSMHMYAK--NFYGGNGIVGAQVPL 146
Query: 246 AVGVAYSLKMEKKDACAVAYTGDGGTSE-QLWKPLSSSSVATMAGPLVPIYQNNFEAM 302
VG+A + K +KD + GDG ++ Q+++ + +++ + P + I +NN M
Sbjct: 147 GVGIALACKYNEKDEICLTLYGDGAANQGQIFEAYNMAALWKL--PCIFICENNRYGM 202
>sp|P29803|ODPAT_HUMAN Pyruvate dehydrogenase E1 component subunit alpha, testis-specific
form, mitochondrial OS=Homo sapiens GN=PDHA2 PE=1 SV=1
Length = 388
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 84/179 (46%), Gaps = 8/179 (4%)
Query: 127 VSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRF--SFYLTTIGEEAINIGSAAALSADDFI 184
+++ +K Y M+T++ M+ + +Q +F F G+EA +G A ++ D +
Sbjct: 54 LTRAEGLKYYRMMLTVRRMELKADQLYKQ-KFIRGFCHLCDGQEACCVGLEAGINPSDHV 112
Query: 185 LPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLP 244
+ YR GV RG +++ ++ + KG+ +H +K N+ + + Q P
Sbjct: 113 ITSYRAHGVCYTRGLSVRSILAELTGRRGGCAKGKGGSMHMYTK--NFYGGNGIVGAQGP 170
Query: 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSE-QLWKPLSSSSVATMAGPLVPIYQNNFEAM 302
G+A + K + D + GDG ++ Q+ + + +++ + P V I +NN M
Sbjct: 171 LGAGIALACKYKGNDEICLTLYGDGAANQGQIAEAFNMAALWKL--PCVFICENNLYGM 227
>sp|P26284|ODPA_RAT Pyruvate dehydrogenase E1 component subunit alpha, somatic form,
mitochondrial OS=Rattus norvegicus GN=Pdha1 PE=1 SV=2
Length = 390
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 83/178 (46%), Gaps = 6/178 (3%)
Query: 127 VSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRF-SFYLTTIGEEAINIGSAAALSADDFIL 185
+++E +K Y M T++ M+ + +Q F G+EA +G A ++ D ++
Sbjct: 56 LTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGINPTDHLI 115
Query: 186 PQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQ 245
YR G RG+ ++ ++ + KG+ +H +K N+ + + Q+P
Sbjct: 116 TAYRAHGFTFNRGHAVRAILAELTGRRGGCAKGKGGSMHMYAK--NFYGGNGIVGAQVPL 173
Query: 246 AVGVAYSLKMEKKDACAVAYTGDGGTSE-QLWKPLSSSSVATMAGPLVPIYQNNFEAM 302
G+A + K KD + GDG ++ Q+++ + +++ + P + I +NN M
Sbjct: 174 GAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKL--PCIFICENNRYGM 229
>sp|P35486|ODPA_MOUSE Pyruvate dehydrogenase E1 component subunit alpha, somatic form,
mitochondrial OS=Mus musculus GN=Pdha1 PE=1 SV=1
Length = 390
Score = 55.1 bits (131), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 82/178 (46%), Gaps = 6/178 (3%)
Query: 127 VSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRF-SFYLTTIGEEAINIGSAAALSADDFIL 185
+++E +K Y M T++ M+ + +Q F G+EA +G A ++ D ++
Sbjct: 56 LTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGINPTDHLI 115
Query: 186 PQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQ 245
YR G RG ++ ++ + KG+ +H +K N+ + + Q+P
Sbjct: 116 TAYRAHGFTFTRGLPVRAILAELTGRRGGCAKGKGGSMHMYAK--NFYGGNGIVGAQVPL 173
Query: 246 AVGVAYSLKMEKKDACAVAYTGDGGTSE-QLWKPLSSSSVATMAGPLVPIYQNNFEAM 302
G+A + K KD + GDG ++ Q+++ + +++ + P + I +NN M
Sbjct: 174 GAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKL--PCIFICENNRYGM 229
>sp|P26268|ODPT_ASCSU Pyruvate dehydrogenase E1 component subunit alpha type II,
mitochondrial (Fragment) OS=Ascaris suum PE=2 SV=1
Length = 391
Score = 55.1 bits (131), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 89/182 (48%), Gaps = 12/182 (6%)
Query: 126 QVSKEVAVKMYSHMVTLQVMDSV---LYEAQRQGRFSFYLTTIGEEAINIGSAAALSADD 182
V+KE A++ Y+ M T++ M++ LY+ ++ F + G+EA +G AA+ D
Sbjct: 46 HVTKEDALRYYTQMQTIRRMETAAGNLYKEKKVRGFCHLYS--GQEACAVGMKAAMEPGD 103
Query: 183 FILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIH-YGSKKLNYITISSPIAT 241
+ YR G G + + ++ + G+ +H YG N+ + +
Sbjct: 104 AAITAYRCHGWTYLSGSPVAKVLCELTGRITGNVYGKGGSMHMYGE---NFYGGNGIVGA 160
Query: 242 QLPQAVGVAYSLKMEKKDACAVAYTGDGGTSE-QLWKPLSSSSVATMAGPLVPIYQNNFE 300
Q P G+A+++K +K+ + GDG T++ QL++ ++ + + + P++ + +NN
Sbjct: 161 QQPLGTGIAFAMKYKKQKNVCITLFGDGATNQGQLYESMNMAKLWEL--PVLYVCENNGY 218
Query: 301 AM 302
M
Sbjct: 219 GM 220
>sp|Q06437|ODPAT_RAT Pyruvate dehydrogenase E1 component subunit alpha, testis-specific
form, mitochondrial OS=Rattus norvegicus GN=Pdha2 PE=1
SV=1
Length = 391
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 88/179 (49%), Gaps = 8/179 (4%)
Query: 127 VSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRF--SFYLTTIGEEAINIGSAAALSADDFI 184
+++E A+K Y +M ++ M+ + +Q +F F G+EA N+G A ++ D I
Sbjct: 57 LTREEALKYYRNMQVIRRMELKADQLYKQ-KFIRGFCHLCDGQEACNVGLEAGINPTDHI 115
Query: 185 LPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLP 244
+ YR G+ RG +++ ++ K KG+ +H +K N+ + + Q+P
Sbjct: 116 ITSYRAHGLCYTRGLSVKSILAELTGRKGGCAKGKGGSMHMYAK--NFYGGNGIVGAQVP 173
Query: 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSE-QLWKPLSSSSVATMAGPLVPIYQNNFEAM 302
GVA + K K +A GDG ++ Q+++ + S++ + P V I +NN M
Sbjct: 174 LGAGVALACKYLKNGQICLALYGDGAANQGQVFEAYNMSALWKL--PCVFICENNRYGM 230
>sp|Q9R9N5|ODPA_RHIME Pyruvate dehydrogenase E1 component subunit alpha OS=Rhizobium
meliloti (strain 1021) GN=pdhA PE=3 SV=1
Length = 348
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 88/184 (47%), Gaps = 4/184 (2%)
Query: 121 GSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFS-FYLTTIGEEAINIGSAAALS 179
G + SKE +K Y M+ ++ + + G F IG+EA+ +G AL
Sbjct: 25 GGTIAEFSKEDDLKAYREMLLIRRFEEKAGQLYGMGFIGGFCHLYIGQEAVVVGMQLALK 84
Query: 180 ADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPI 239
D ++ YR+ G +L G + + ++ + KG+ +H SK+ ++ +
Sbjct: 85 EGDQVITGYRDHGHMLACGMSARGVMAELTGRRGGLSKGKGGSMHMFSKEKHFYGGHGIV 144
Query: 240 ATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSE-QLWKPLSSSSVATMAGPLVPIYQNN 298
Q+ G+A++ + D ++AY GDG ++ Q+++ + +++ + P++ I +NN
Sbjct: 145 GAQVSLGTGLAFANRYRGNDNVSLAYFGDGAANQGQVYESFNMAALWKL--PVIYIVENN 202
Query: 299 FEAM 302
AM
Sbjct: 203 RYAM 206
>sp|O66112|ODPA_ZYMMO Pyruvate dehydrogenase E1 component subunit alpha OS=Zymomonas
mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4)
GN=pdhA PE=3 SV=1
Length = 354
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 71/146 (48%), Gaps = 4/146 (2%)
Query: 159 SFYLTTIGEEAINIGSAAALS-ADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGK 217
F IG+EA+ +G AAL D ++ YRE G +L G + ++ +
Sbjct: 67 GFCHLYIGQEAVAVGLQAALQPGRDSVITGYREHGHMLAYGIDPKIVMAELTGRASGISH 126
Query: 218 GRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSE-QLW 276
G+ +H S + + + + Q+P G+A++ K C+ AY GDG ++ Q++
Sbjct: 127 GKGGSMHMFSTEHKFFGGNGIVGAQVPLGAGLAFAHKYRNDGGCSAAYFGDGSANQGQVY 186
Query: 277 KPLSSSSVATMAGPLVPIYQNNFEAM 302
+ + +++ + P++ + +NN AM
Sbjct: 187 EAYNMAALWKL--PVIFVIENNGYAM 210
>sp|P52899|ODPA_CAEEL Probable pyruvate dehydrogenase E1 component subunit alpha,
mitochondrial OS=Caenorhabditis elegans GN=T05H10.6 PE=2
SV=1
Length = 397
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 89/177 (50%), Gaps = 12/177 (6%)
Query: 127 VSKEVAVKMYSHMVTLQVMDSV---LYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDF 183
+++E A+K Y M ++ M+S LY+ ++ F + G+EA +G AA++ D
Sbjct: 50 LNREDALKYYRDMQVIRRMESAAGNLYKEKKIRGFCHLYS--GQEACAVGMKAAMTEGDA 107
Query: 184 ILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQL 243
++ YR G G T+ + ++ A + G+ +H +K N+ + + Q
Sbjct: 108 VITAYRCHGWTWLLGATVTEVLAELTGRVAGNVHGKGGSMHMYTK--NFYGGNGIVGAQQ 165
Query: 244 PQAVGVAYSLKM-EKKDACAVAYTGDGGTSE-QLWKPLSSSSVATMAGPLVPIYQNN 298
P GVA ++K E+K+ C Y GDG ++ QL++ + + + + P++ + +NN
Sbjct: 166 PLGAGVALAMKYREQKNVCVTLY-GDGAANQGQLFEATNMAKLWDL--PVLFVCENN 219
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.131 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 115,869,054
Number of Sequences: 539616
Number of extensions: 4788785
Number of successful extensions: 12919
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 12819
Number of HSP's gapped (non-prelim): 81
length of query: 317
length of database: 191,569,459
effective HSP length: 117
effective length of query: 200
effective length of database: 128,434,387
effective search space: 25686877400
effective search space used: 25686877400
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)