Query 021087
Match_columns 317
No_of_seqs 262 out of 1648
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 07:29:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021087.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021087hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1182 Branched chain alpha-k 100.0 2.9E-79 6.2E-84 580.4 15.2 232 81-313 37-269 (432)
2 COG1071 AcoA Pyruvate/2-oxoglu 100.0 1.5E-64 3.2E-69 490.7 18.7 208 107-315 2-214 (358)
3 PLN02269 Pyruvate dehydrogenas 100.0 1.1E-57 2.3E-62 444.9 20.0 203 106-316 13-216 (362)
4 CHL00149 odpA pyruvate dehydro 100.0 9.1E-54 2E-58 414.1 18.8 192 123-315 13-212 (341)
5 TIGR03182 PDH_E1_alph_y pyruva 100.0 2.7E-53 5.8E-58 406.3 17.8 186 129-315 1-187 (315)
6 PLN02374 pyruvate dehydrogenas 100.0 6.9E-52 1.5E-56 412.1 19.1 193 123-316 79-279 (433)
7 TIGR03181 PDH_E1_alph_x pyruva 100.0 1.9E-50 4.2E-55 390.4 19.5 199 107-315 1-199 (341)
8 cd02000 TPP_E1_PDC_ADC_BCADC T 100.0 7.4E-50 1.6E-54 377.8 17.4 179 135-314 1-180 (293)
9 KOG0225 Pyruvate dehydrogenase 100.0 2.4E-49 5.3E-54 378.2 14.3 191 123-316 52-243 (394)
10 PF00676 E1_dh: Dehydrogenase 100.0 5E-49 1.1E-53 374.8 16.1 179 136-316 1-179 (300)
11 PRK09404 sucA 2-oxoglutarate d 100.0 4.3E-33 9.4E-38 297.3 17.4 180 126-314 185-400 (924)
12 cd02016 TPP_E1_OGDC_like Thiam 100.0 2.6E-32 5.6E-37 257.0 11.3 153 163-316 16-200 (265)
13 PRK12315 1-deoxy-D-xylulose-5- 100.0 4.8E-29 1E-33 256.2 13.3 170 120-308 8-183 (581)
14 TIGR00239 2oxo_dh_E1 2-oxoglut 99.9 3.4E-24 7.3E-29 229.0 16.6 186 124-314 183-401 (929)
15 COG3959 Transketolase, N-termi 99.9 9.6E-21 2.1E-25 174.3 15.1 176 131-316 6-198 (243)
16 TIGR00204 dxs 1-deoxy-D-xylulo 99.8 5.1E-20 1.1E-24 190.9 13.4 174 120-310 6-183 (617)
17 cd02007 TPP_DXS Thiamine pyrop 99.8 7.2E-20 1.6E-24 164.8 12.5 118 180-307 24-144 (195)
18 TIGR00232 tktlase_bact transke 99.8 6.2E-20 1.3E-24 191.4 13.3 165 139-315 4-197 (653)
19 PRK12754 transketolase; Review 99.8 1.2E-19 2.7E-24 189.4 14.1 165 139-315 8-201 (663)
20 PRK12753 transketolase; Review 99.8 3.9E-19 8.5E-24 185.7 13.2 162 139-310 8-197 (663)
21 PLN02790 transketolase 99.8 6.7E-19 1.5E-23 183.7 13.5 158 143-310 2-188 (654)
22 PTZ00089 transketolase; Provis 99.8 1.4E-18 3E-23 181.5 13.8 163 139-310 10-199 (661)
23 PRK05444 1-deoxy-D-xylulose-5- 99.8 1.5E-18 3.2E-23 178.5 13.0 183 107-309 2-189 (580)
24 cd02011 TPP_PK Thiamine pyroph 99.8 1.5E-18 3.2E-23 160.6 8.1 134 165-316 2-141 (227)
25 cd02012 TPP_TK Thiamine pyroph 99.8 8.3E-18 1.8E-22 156.3 12.8 164 142-314 3-182 (255)
26 PLN02582 1-deoxy-D-xylulose-5- 99.7 1.3E-17 2.8E-22 174.7 14.3 163 121-300 40-206 (677)
27 cd02017 TPP_E1_EcPDC_like Thia 99.7 1.7E-16 3.7E-21 156.5 13.5 168 139-315 8-204 (386)
28 PRK05899 transketolase; Review 99.7 2.5E-16 5.4E-21 163.3 15.1 164 136-309 9-200 (624)
29 PRK12571 1-deoxy-D-xylulose-5- 99.7 3.1E-16 6.7E-21 163.5 14.4 170 120-307 14-188 (641)
30 PF00456 Transketolase_N: Tran 99.7 7.6E-17 1.6E-21 156.5 8.2 162 139-310 5-194 (332)
31 PRK11864 2-ketoisovalerate fer 99.7 1.1E-16 2.5E-21 153.5 7.3 116 187-306 14-137 (300)
32 PLN02234 1-deoxy-D-xylulose-5- 99.6 1.5E-14 3.2E-19 150.9 13.8 175 121-312 73-257 (641)
33 TIGR00759 aceE pyruvate dehydr 99.6 4.1E-14 9E-19 150.6 15.5 148 155-311 101-270 (885)
34 KOG0523 Transketolase [Carbohy 99.5 9.6E-14 2.1E-18 142.0 15.2 166 137-311 12-193 (632)
35 TIGR03186 AKGDH_not_PDH alpha- 99.5 9.5E-14 2E-18 148.8 15.9 149 155-310 101-269 (889)
36 PF13292 DXP_synthase_N: 1-deo 99.5 1.5E-14 3.3E-19 136.5 6.7 172 121-308 7-181 (270)
37 COG1154 Dxs Deoxyxylulose-5-ph 99.5 1.3E-13 2.9E-18 141.5 12.2 172 120-308 10-186 (627)
38 PRK13012 2-oxoacid dehydrogena 99.4 1.2E-12 2.6E-17 140.7 15.0 161 142-311 96-284 (896)
39 PLN02225 1-deoxy-D-xylulose-5- 99.4 1.2E-12 2.5E-17 137.7 11.4 169 120-305 84-256 (701)
40 PRK09405 aceE pyruvate dehydro 99.4 4.9E-12 1.1E-16 135.8 15.7 172 129-309 77-274 (891)
41 COG0021 TktA Transketolase [Ca 99.2 1.8E-10 3.8E-15 119.4 13.1 161 139-310 10-199 (663)
42 PRK05261 putative phosphoketol 99.1 1.2E-10 2.7E-15 123.8 9.6 150 158-315 49-220 (785)
43 cd00568 TPP_enzymes Thiamine p 99.0 4.7E-10 1E-14 95.9 4.5 68 232-306 41-108 (168)
44 cd02002 TPP_BFDC Thiamine pyro 98.9 3.1E-09 6.6E-14 92.8 5.7 62 237-305 49-111 (178)
45 cd02004 TPP_BZL_OCoD_HPCL Thia 98.7 2.3E-08 5E-13 87.3 7.4 66 235-307 46-112 (172)
46 cd02014 TPP_POX Thiamine pyrop 98.7 1.2E-08 2.5E-13 90.0 4.2 61 236-303 50-111 (178)
47 cd02013 TPP_Xsc_like Thiamine 98.5 1.1E-07 2.3E-12 85.4 4.7 61 236-303 52-113 (196)
48 PRK07092 benzoylformate decarb 98.5 1.3E-07 2.8E-12 96.3 5.6 62 235-303 405-467 (530)
49 cd02005 TPP_PDC_IPDC Thiamine 98.5 1.5E-07 3.1E-12 83.8 5.3 63 235-304 48-111 (183)
50 cd02015 TPP_AHAS Thiamine pyro 98.5 2E-07 4.4E-12 82.5 5.6 60 236-302 49-109 (186)
51 cd03372 TPP_ComE Thiamine pyro 98.5 1E-07 2.2E-12 84.8 3.4 62 236-305 41-104 (179)
52 PF02775 TPP_enzyme_C: Thiamin 98.4 2.4E-07 5.2E-12 79.3 3.6 62 235-303 26-88 (153)
53 cd02008 TPP_IOR_alpha Thiamine 98.4 7.2E-07 1.6E-11 78.7 6.6 62 235-302 49-111 (178)
54 PRK06725 acetolactate synthase 98.3 7.2E-07 1.6E-11 92.1 5.8 59 237-302 422-481 (570)
55 TIGR03846 sulfopy_beta sulfopy 98.3 7.5E-07 1.6E-11 79.6 5.0 60 236-303 41-102 (181)
56 PRK08327 acetolactate synthase 98.3 1.7E-06 3.7E-11 89.2 7.2 63 236-303 429-492 (569)
57 cd02006 TPP_Gcl Thiamine pyrop 98.2 1.5E-06 3.3E-11 78.2 5.3 61 236-303 56-117 (202)
58 PRK08155 acetolactate synthase 98.2 1.5E-06 3.3E-11 89.2 5.8 61 237-304 419-480 (564)
59 PRK06546 pyruvate dehydrogenas 98.2 1.6E-06 3.5E-11 89.6 5.5 61 236-303 407-468 (578)
60 cd02010 TPP_ALS Thiamine pyrop 98.2 1.3E-06 2.7E-11 77.4 4.1 62 235-303 46-108 (177)
61 cd02001 TPP_ComE_PpyrDC Thiami 98.2 2.3E-06 5E-11 74.6 5.0 60 236-303 41-102 (157)
62 cd03371 TPP_PpyrDC Thiamine py 98.2 2.2E-06 4.8E-11 76.9 5.0 61 236-303 47-109 (188)
63 cd02003 TPP_IolD Thiamine pyro 98.2 3.4E-06 7.3E-11 76.3 6.1 61 236-303 47-108 (205)
64 PRK07524 hypothetical protein; 98.2 1.9E-06 4.1E-11 87.8 4.7 61 236-303 406-467 (535)
65 cd02009 TPP_SHCHC_synthase Thi 98.1 1.2E-06 2.7E-11 77.2 3.0 58 237-302 51-109 (175)
66 PRK08527 acetolactate synthase 98.1 2.9E-06 6.4E-11 87.2 5.7 59 237-302 414-473 (563)
67 PRK08266 hypothetical protein; 98.1 2.6E-06 5.7E-11 86.8 5.4 61 236-303 401-462 (542)
68 PRK06882 acetolactate synthase 98.1 2.9E-06 6.2E-11 87.2 5.6 60 235-301 419-479 (574)
69 cd03375 TPP_OGFOR Thiamine pyr 98.1 3.8E-06 8.2E-11 75.5 5.3 60 237-303 51-112 (193)
70 PRK06163 hypothetical protein; 98.1 3E-06 6.4E-11 77.3 4.5 60 236-302 56-117 (202)
71 PRK12474 hypothetical protein; 98.1 4.3E-06 9.2E-11 85.1 6.0 61 236-303 388-449 (518)
72 PRK07586 hypothetical protein; 98.1 2.9E-06 6.2E-11 86.0 4.7 60 236-302 384-444 (514)
73 PRK07710 acetolactate synthase 98.1 3E-06 6.5E-11 87.2 4.8 59 237-302 424-483 (571)
74 TIGR00118 acolac_lg acetolacta 98.1 3.8E-06 8.2E-11 86.1 5.3 58 236-300 411-468 (558)
75 PRK07064 hypothetical protein; 98.1 4.7E-06 1E-10 84.9 5.8 63 234-303 402-465 (544)
76 PRK06154 hypothetical protein; 98.0 5.2E-06 1.1E-10 85.7 5.5 60 236-302 430-490 (565)
77 PRK05858 hypothetical protein; 98.0 7.1E-06 1.5E-10 84.0 6.1 60 236-302 406-466 (542)
78 PRK08199 thiamine pyrophosphat 98.0 6.8E-06 1.5E-10 84.3 5.8 60 236-302 414-474 (557)
79 CHL00099 ilvB acetohydroxyacid 98.0 6E-06 1.3E-10 85.4 5.3 61 235-302 428-489 (585)
80 PRK09107 acetolactate synthase 98.0 7.4E-06 1.6E-10 85.0 5.7 59 237-302 430-489 (595)
81 TIGR01504 glyox_carbo_lig glyo 98.0 5.8E-06 1.3E-10 85.7 4.9 59 237-302 418-477 (588)
82 PRK06466 acetolactate synthase 98.0 8.2E-06 1.8E-10 84.1 5.5 60 236-302 422-482 (574)
83 PRK12270 kgd alpha-ketoglutara 98.0 0.00019 4.1E-09 78.6 15.6 201 106-311 465-702 (1228)
84 PLN02573 pyruvate decarboxylas 98.0 5.6E-06 1.2E-10 85.8 3.9 61 236-303 427-488 (578)
85 PRK11269 glyoxylate carboligas 97.9 9.9E-06 2.2E-10 83.8 5.3 61 235-302 417-478 (591)
86 PRK09124 pyruvate dehydrogenas 97.9 1.1E-05 2.4E-10 83.1 5.6 61 236-303 407-468 (574)
87 cd03376 TPP_PFOR_porB_like Thi 97.9 5.6E-06 1.2E-10 77.0 2.8 62 233-301 58-121 (235)
88 PRK05778 2-oxoglutarate ferred 97.9 1.2E-05 2.6E-10 77.7 5.2 59 237-302 70-130 (301)
89 PRK06112 acetolactate synthase 97.9 2.4E-05 5.1E-10 80.7 6.7 56 237-299 437-492 (578)
90 PRK08273 thiamine pyrophosphat 97.9 1.5E-05 3.3E-10 82.6 5.3 60 237-302 415-480 (597)
91 PRK07979 acetolactate synthase 97.9 1.6E-05 3.4E-10 82.0 5.4 59 237-302 421-480 (574)
92 TIGR03393 indolpyr_decarb indo 97.9 1E-05 2.3E-10 82.7 3.9 60 236-302 403-463 (539)
93 PLN02470 acetolactate synthase 97.8 1.8E-05 3.9E-10 81.8 5.2 60 236-302 425-485 (585)
94 PRK06048 acetolactate synthase 97.8 1.9E-05 4.1E-10 81.2 5.3 59 237-302 414-473 (561)
95 PRK07282 acetolactate synthase 97.8 1.6E-05 3.4E-10 82.0 4.6 61 236-303 417-478 (566)
96 PRK11867 2-oxoglutarate ferred 97.8 1.7E-05 3.7E-10 76.1 4.5 59 237-302 69-129 (286)
97 COG3961 Pyruvate decarboxylase 97.8 1.7E-05 3.7E-10 81.4 4.7 69 233-308 407-476 (557)
98 TIGR02418 acolac_catab acetola 97.8 2.2E-05 4.7E-10 80.2 5.4 60 236-302 407-467 (539)
99 PRK07525 sulfoacetaldehyde ace 97.8 2.2E-05 4.8E-10 81.3 5.5 60 236-302 434-494 (588)
100 TIGR02720 pyruv_oxi_spxB pyruv 97.8 2.4E-05 5.1E-10 80.9 5.5 61 236-303 407-468 (575)
101 PRK08611 pyruvate oxidase; Pro 97.8 1.9E-05 4.1E-10 81.6 4.8 61 236-303 407-468 (576)
102 PRK11865 pyruvate ferredoxin o 97.8 3.9E-05 8.4E-10 74.3 6.7 71 229-301 61-132 (299)
103 PRK08979 acetolactate synthase 97.8 2.5E-05 5.5E-10 80.5 5.6 59 237-302 421-480 (572)
104 PRK06456 acetolactate synthase 97.8 2.4E-05 5.2E-10 80.5 5.4 61 236-303 420-481 (572)
105 COG2609 AceE Pyruvate dehydrog 97.8 0.00098 2.1E-08 70.8 17.0 175 130-309 75-271 (887)
106 PRK06457 pyruvate dehydrogenas 97.8 2.3E-05 5E-10 80.4 5.0 62 236-303 395-457 (549)
107 PRK08322 acetolactate synthase 97.8 3E-05 6.5E-10 79.1 5.6 61 236-303 405-466 (547)
108 PRK08978 acetolactate synthase 97.8 2.4E-05 5.2E-10 80.1 4.9 60 237-303 401-461 (548)
109 PRK09259 putative oxalyl-CoA d 97.8 4.4E-05 9.6E-10 78.6 6.7 56 236-299 423-478 (569)
110 TIGR03336 IOR_alpha indolepyru 97.8 4.2E-05 9.1E-10 79.7 6.5 65 233-303 399-464 (595)
111 TIGR03394 indol_phenyl_DC indo 97.8 2E-05 4.3E-10 80.9 4.1 60 236-303 402-462 (535)
112 PRK09628 oorB 2-oxoglutarate-a 97.8 2.7E-05 5.9E-10 74.5 4.6 60 237-302 68-128 (277)
113 PRK06965 acetolactate synthase 97.7 3.9E-05 8.4E-10 79.5 5.8 59 237-302 437-496 (587)
114 PRK07449 2-succinyl-5-enolpyru 97.7 2.4E-05 5.2E-10 80.3 4.0 58 237-302 425-483 (568)
115 PRK07418 acetolactate synthase 97.7 3.8E-05 8.1E-10 80.0 5.5 60 236-302 433-493 (616)
116 TIGR03457 sulphoacet_xsc sulfo 97.7 3.9E-05 8.4E-10 79.2 5.3 59 237-302 430-489 (579)
117 TIGR03254 oxalate_oxc oxalyl-C 97.7 6.2E-05 1.3E-09 77.2 6.7 56 236-299 416-471 (554)
118 PRK11869 2-oxoacid ferredoxin 97.7 4.4E-05 9.5E-10 73.2 5.2 60 237-302 60-120 (280)
119 PRK11866 2-oxoacid ferredoxin 97.7 3.7E-05 8.1E-10 73.7 4.7 60 236-302 58-119 (279)
120 cd02018 TPP_PFOR Thiamine pyro 97.7 2.2E-05 4.8E-10 73.0 2.8 65 235-302 62-129 (237)
121 PRK08617 acetolactate synthase 97.7 4.9E-05 1.1E-09 77.9 5.5 60 236-302 413-473 (552)
122 TIGR02177 PorB_KorB 2-oxoacid: 97.7 5.2E-05 1.1E-09 73.0 5.2 60 237-303 53-114 (287)
123 PRK07789 acetolactate synthase 97.7 4.3E-05 9.3E-10 79.5 4.9 59 237-302 447-506 (612)
124 COG0028 IlvB Thiamine pyrophos 97.6 0.00011 2.5E-09 76.2 6.8 62 235-303 406-468 (550)
125 PRK06276 acetolactate synthase 97.6 8.2E-05 1.8E-09 77.0 5.4 59 237-302 419-478 (586)
126 TIGR03297 Ppyr-DeCO2ase phosph 97.3 0.00015 3.3E-09 71.7 3.7 60 236-302 220-281 (361)
127 KOG1184 Thiamine pyrophosphate 97.0 0.00099 2.2E-08 68.6 5.2 68 234-308 412-480 (561)
128 PLN02980 2-oxoglutarate decarb 96.6 0.0023 5E-08 74.2 5.0 60 236-303 758-822 (1655)
129 PF09364 XFP_N: XFP N-terminal 96.5 0.0074 1.6E-07 60.1 7.0 95 201-308 111-210 (379)
130 KOG1185 Thiamine pyrophosphate 95.4 0.031 6.7E-07 57.7 6.3 63 236-305 429-493 (571)
131 COG3957 Phosphoketolase [Carbo 93.8 0.056 1.2E-06 57.9 3.6 85 221-310 137-225 (793)
132 COG1013 PorB Pyruvate:ferredox 92.4 0.22 4.8E-06 48.3 5.3 62 233-301 66-129 (294)
133 KOG0451 Predicted 2-oxoglutara 91.1 2.7 5.9E-05 44.7 11.7 173 126-310 153-373 (913)
134 COG3960 Glyoxylate carboligase 89.0 0.45 9.7E-06 47.8 3.9 92 201-300 375-475 (592)
135 COG1165 MenD 2-succinyl-6-hydr 88.6 4.9 0.00011 42.5 11.3 162 108-304 307-482 (566)
136 COG0567 SucA 2-oxoglutarate de 86.6 23 0.0005 39.6 15.4 182 123-309 168-378 (906)
137 KOG4166 Thiamine pyrophosphate 80.9 2.1 4.5E-05 44.4 4.3 65 228-299 512-579 (675)
138 cd06586 TPP_enzyme_PYR Pyrimid 72.0 7.6 0.00017 32.3 4.8 52 245-300 46-97 (154)
139 COG4231 Indolepyruvate ferredo 71.2 5.7 0.00012 42.6 4.6 66 229-301 420-485 (640)
140 cd03377 TPP_PFOR_PNO Thiamine 57.9 14 0.0003 37.3 4.3 40 260-302 152-193 (365)
141 COG3962 Acetolactate synthase 55.7 19 0.00041 37.9 4.9 50 251-303 454-504 (617)
142 cd07034 TPP_PYR_PFOR_IOR-alpha 51.2 19 0.00041 30.6 3.6 49 246-299 53-101 (160)
143 PF05014 Nuc_deoxyrib_tr: Nucl 43.5 40 0.00087 27.3 4.2 40 259-300 62-101 (113)
144 cd07033 TPP_PYR_DXS_TK_like Py 42.1 42 0.00091 28.9 4.3 57 247-307 52-110 (156)
145 cd07035 TPP_PYR_POX_like Pyrim 40.8 40 0.00087 28.4 4.0 51 245-299 45-96 (155)
146 PRK11892 pyruvate dehydrogenas 34.2 55 0.0012 33.9 4.4 31 275-305 227-265 (464)
147 KOG0450 2-oxoglutarate dehydro 32.4 3.3E+02 0.0072 30.5 9.8 175 126-306 245-451 (1017)
148 PF03646 FlaG: FlaG protein; 29.5 60 0.0013 26.3 3.1 33 105-142 66-99 (107)
149 TIGR00589 ogt O-6-methylguanin 28.9 34 0.00073 27.0 1.5 17 104-120 49-65 (80)
150 PLN02527 aspartate carbamoyltr 28.1 3E+02 0.0065 26.8 8.2 168 125-296 7-186 (306)
151 PRK09193 indolepyruvate ferred 28.0 83 0.0018 36.5 4.8 61 234-300 478-538 (1165)
152 cd05008 SIS_GlmS_GlmD_1 SIS (S 26.6 1.5E+02 0.0032 23.7 5.0 41 256-299 44-84 (126)
153 PF01380 SIS: SIS domain SIS d 26.5 1.2E+02 0.0026 24.1 4.4 40 257-299 52-91 (131)
154 KOG3384 Selenoprotein [General 26.3 64 0.0014 28.6 2.9 31 107-137 118-148 (154)
155 cd07037 TPP_PYR_MenD Pyrimidin 25.3 1E+02 0.0022 27.1 4.1 50 246-299 47-97 (162)
156 PLN02225 1-deoxy-D-xylulose-5- 25.1 1.1E+02 0.0024 33.5 5.0 53 245-301 434-486 (701)
157 PRK13030 2-oxoacid ferredoxin 25.1 1E+02 0.0022 35.7 4.9 62 233-300 464-525 (1159)
158 TIGR02176 pyruv_ox_red pyruvat 25.0 91 0.002 36.0 4.5 39 261-302 953-993 (1165)
159 PLN02683 pyruvate dehydrogenas 24.5 1.4E+02 0.0029 29.8 5.2 49 246-297 86-142 (356)
160 PLN02582 1-deoxy-D-xylulose-5- 24.3 1.1E+02 0.0024 33.3 4.8 58 246-307 410-468 (677)
161 cd00198 vWFA Von Willebrand fa 23.7 2.6E+02 0.0056 21.9 5.9 38 258-296 100-139 (161)
162 cd01450 vWFA_subfamily_ECM Von 23.0 2.8E+02 0.0061 22.3 6.1 40 258-298 102-142 (161)
163 cd07036 TPP_PYR_E1-PDHc-beta_l 22.8 1.6E+02 0.0035 26.0 4.9 57 246-306 56-121 (167)
164 TIGR00232 tktlase_bact transke 22.7 91 0.002 33.5 3.8 32 275-307 434-467 (653)
165 PRK07119 2-ketoisovalerate fer 21.8 1.4E+02 0.0031 29.5 4.7 48 243-299 61-108 (352)
166 PRK05899 transketolase; Review 21.8 93 0.002 33.0 3.6 58 246-307 379-438 (624)
167 PF01035 DNA_binding_1: 6-O-me 21.6 38 0.00082 26.7 0.5 19 103-121 48-66 (85)
168 cd06445 ATase The DNA repair p 21.5 58 0.0013 25.2 1.6 18 104-121 47-64 (79)
169 PF00205 TPP_enzyme_M: Thiamin 21.3 58 0.0013 27.0 1.6 37 255-293 8-44 (137)
170 cd07039 TPP_PYR_POX Pyrimidine 21.2 1.6E+02 0.0034 25.7 4.4 50 246-299 50-100 (164)
171 PLN02234 1-deoxy-D-xylulose-5- 20.9 1.2E+02 0.0026 32.8 4.2 58 246-307 411-469 (641)
172 TIGR00315 cdhB CO dehydrogenas 20.8 1.5E+02 0.0033 26.5 4.2 41 254-296 23-63 (162)
173 cd05014 SIS_Kpsf KpsF-like pro 20.5 1.9E+02 0.004 23.2 4.5 41 256-299 45-85 (128)
174 PRK12315 1-deoxy-D-xylulose-5- 20.3 1.5E+02 0.0033 31.3 4.8 59 246-308 332-390 (581)
175 cd07038 TPP_PYR_PDC_IPDC_like 20.3 1.2E+02 0.0025 26.4 3.4 50 246-299 47-96 (162)
176 cd02991 UAS_ETEA UAS family, E 20.3 75 0.0016 26.4 2.1 39 261-302 52-92 (116)
177 PTZ00089 transketolase; Provis 20.2 1.2E+02 0.0027 32.6 4.2 44 260-307 429-474 (661)
No 1
>KOG1182 consensus Branched chain alpha-keto acid dehydrogenase complex, alpha subunit [Energy production and conversion]
Probab=100.00 E-value=2.9e-79 Score=580.38 Aligned_cols=232 Identities=54% Similarity=0.853 Sum_probs=226.8
Q ss_pred ccccCCCCccCccccccccCCCCCCCCceEEeCCCCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccc
Q 021087 81 VLDFPGGKVGYTSEMRFIPESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSF 160 (317)
Q Consensus 81 ~~~f~~~~~~~~~~~~~~~~~~~~~~p~~rvld~~G~~~~~~~~~~ls~e~l~~lYr~M~~~R~~D~~~~~lqrqGrigf 160 (317)
..+|||+|+.||++|+|++++...+||||||||.+|++++++++|.+++|..++||++|+++.+||.++++.||||||+|
T Consensus 37 ~~~fpg~ka~ft~kl~fI~~~d~~~iPiYRV~d~~G~ii~~sqdp~~~ee~~~kmy~~M~~Ln~MD~IlYesQRQGRiSF 116 (432)
T KOG1182|consen 37 YKDFPGAKAAFTSKLEFIQPSDTPRIPIYRVMDADGQIIDKSQDPQLSEEVVLKMYKDMTLLNIMDRILYESQRQGRISF 116 (432)
T ss_pred hccCCCCccccccceeecCcccCCCCceEEEecCCCcccCcccCCCcCHHHHHHHHHHHHHHHHHHHHHHHHhhcceEEE
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCchHHHHHHHHhccCCCCeeecCCchHHHHHHhCCCHHHHHHHHhhCCCCCCCCCCCCcccCCCCCcccccCCCCC
Q 021087 161 YLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIA 240 (317)
Q Consensus 161 y~~~~GqEA~~VG~a~AL~~~D~v~~~YR~~g~~l~rG~~l~~~~~q~~G~~~g~~kGr~mp~H~~s~~~~i~~~sg~lG 240 (317)
|++++||||+.||+++||+|+|.||+|||+.|++||||++++++++|||||..|.+||||||+||+++++|++++++||.
T Consensus 117 YmT~~GEEa~higSAAAL~p~Dli~gQYREaGVLlwRgftle~f~~qCyGn~~d~gkGrQMPvHyGs~elnf~tisspla 196 (432)
T KOG1182|consen 117 YMTNFGEEAIHIGSAAALEPQDLIYGQYREAGVLLWRGFTLEEFMNQCYGNKSDLGKGRQMPVHYGSKELNFVTISSPLA 196 (432)
T ss_pred EEeccchhhhhhhhhhhCCcccccccccccCceEEEcCccHHHHHHHhcCCccccccccccccccCccccceEEecchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhhhhHHhhhhhcCCC-cEEEEEEcCCccCccchHHHHHHHHHHcCCCEEEEEecCCccccccccccccCc
Q 021087 241 TQLPQAVGVAYSLKMEKKD-ACAVAYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNNFEAMVLLLRVVHMVS 313 (317)
Q Consensus 241 tqlp~AvG~A~A~kl~g~~-~vvv~~~GDGatseGdfhE~ALN~Aa~~~lPvVFV~eNNgyAIStP~~~~~~~~ 313 (317)
+|+|+|||+|||+|+++++ +|+|||||||++||||||. |+||||+.++||||+|+|||||||||+++|-...
T Consensus 197 tqlpqAvGaaYa~k~~~~nnac~V~yfGdG~aSEGD~HA-~~NfAAtle~Pvif~CRNNG~AISTptseQyr~D 269 (432)
T KOG1182|consen 197 TQLPQAVGAAYALKMRKKNNACAVTYFGDGAASEGDAHA-AFNFAATLECPVIFFCRNNGWAISTPTSEQYRGD 269 (432)
T ss_pred hccchhhhhhhhhhhcccCCeEEEEEecCCcccccchhh-hhhHHHHhCCCEEEEEcCCCeeeccccHHHhcCC
Confidence 9999999999999987665 8999999999999999999 9999999999999999999999999999986543
No 2
>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]
Probab=100.00 E-value=1.5e-64 Score=490.68 Aligned_cols=208 Identities=31% Similarity=0.487 Sum_probs=198.1
Q ss_pred CceEEeCCCCCcccCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc-ccccCCchHHHHHHHHhccCCC-C
Q 021087 107 PCFRVLDDNGELIKGSDFQ--QVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFS-FYLTTIGEEAINIGSAAALSAD-D 182 (317)
Q Consensus 107 p~~rvld~~G~~~~~~~~~--~ls~e~l~~lYr~M~~~R~~D~~~~~lqrqGrig-fy~~~~GqEA~~VG~a~AL~~~-D 182 (317)
+++||+|++|+.+.+.... .+++++++++||.|+++|.||+++.+++|||+|+ |||+++||||++||++++|+++ |
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~y~~M~l~R~fd~k~~~l~r~G~i~gf~~~~~GqEA~~vg~~~aL~~~~D 81 (358)
T COG1071 2 SLIRVLDEDGRAVDELPGPNAALSKEELLELYRLMLLIRRFDEKMLQLQRQGKIGGFYHLYIGQEAVQVGAAAALRPGED 81 (358)
T ss_pred CceeccCcccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCcCCcccHHHHHHHHHHhcCCCCC
Confidence 6789999999998876554 7899999999999999999999999999999995 9999999999999999999966 9
Q ss_pred eeecCCchHHHHHHhCCCHHHHHHHHhhCCCCCCCCCCCCcccCCCCCcccccCCCCCCCchhhhhHHhhhhhcCCCc-E
Q 021087 183 FILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDA-C 261 (317)
Q Consensus 183 ~v~~~YR~~g~~l~rG~~l~~~~~q~~G~~~g~~kGr~mp~H~~s~~~~i~~~sg~lGtqlp~AvG~A~A~kl~g~~~-v 261 (317)
|++|+||+||++|++|+++.++|++++|+.+|+||||+||+|++++++|+++.+++||+|+|+|+|+|||.|+++++. |
T Consensus 82 ~i~~~YR~h~~~l~~G~~~~~~~a~~~G~~~g~~kGr~~~~h~~~~~~~~~~~~~iVg~Q~~~AaG~A~a~k~~~~~~~V 161 (358)
T COG1071 82 WIFPTYRDHGHLLARGVPLKEIMAELLGKATGPCKGRGGSMHYSDKEKGFLGGSGIVGTQIPLAAGAALALKYRGTKDGV 161 (358)
T ss_pred EeecccCccccceecCCCHHHHHHHHhccccCCCCCCCCcccccccccccCCCCceecccccHHHHHHHHHHHhCCCCcE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999555 9
Q ss_pred EEEEEcCCccCccchHHHHHHHHHHcCCCEEEEEecCCccccccccccccCccc
Q 021087 262 AVAYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNNFEAMVLLLRVVHMVSEA 315 (317)
Q Consensus 262 vv~~~GDGatseGdfhE~ALN~Aa~~~lPvVFV~eNNgyAIStP~~~~~~~~~~ 315 (317)
++||||||+++||+||| +||||++|+|||||||+||+||||+|.+.++..+.+
T Consensus 162 a~~~~GDGat~qG~FhE-alN~A~v~klPvvf~ieNN~yAiSvp~~~q~~~~~~ 214 (358)
T COG1071 162 AVAFFGDGATNQGDFHE-ALNFAAVWKLPVVFVIENNQYAISVPRSRQTAAEII 214 (358)
T ss_pred EEEEecCCccccchHHH-HHHHHHHhcCCEEEEEecCCceeecchhhcccchhH
Confidence 99999999999999999 999999999999999999999999999877766544
No 3
>PLN02269 Pyruvate dehydrogenase E1 component subunit alpha
Probab=100.00 E-value=1.1e-57 Score=444.93 Aligned_cols=203 Identities=21% Similarity=0.266 Sum_probs=191.6
Q ss_pred CCceEEeCCCCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc-cccccCCchHHHHHHHHhccCCCCee
Q 021087 106 VPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRF-SFYLTTIGEEAINIGSAAALSADDFI 184 (317)
Q Consensus 106 ~p~~rvld~~G~~~~~~~~~~ls~e~l~~lYr~M~~~R~~D~~~~~lqrqGri-gfy~~~~GqEA~~VG~a~AL~~~D~v 184 (317)
+++.+.+++++ .+.+++|+++++||.|+++|.||+++.++++||+| ||||+++||||++||++++|+++||+
T Consensus 13 ~~~~~~~~~~~-------~~~~~~~~ll~~yr~M~~~R~~e~~~~~l~~~g~i~g~~~~~~GqEA~~vg~~~aL~~~D~~ 85 (362)
T PLN02269 13 FKGHLCDPPSR-------TVETSKQELVDFFRDMYLMRRMEIAADSLYKAKLIRGFCHLYDGQEAVAVGMEAAITKEDAI 85 (362)
T ss_pred ccccccCCccc-------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCCChHHHHHHHHHhcCCCCEE
Confidence 34455555554 23689999999999999999999999999999999 89999999999999999999999999
Q ss_pred ecCCchHHHHHHhCCCHHHHHHHHhhCCCCCCCCCCCCcccCCCCCcccccCCCCCCCchhhhhHHhhhhhcCCCcEEEE
Q 021087 185 LPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVA 264 (317)
Q Consensus 185 ~~~YR~~g~~l~rG~~l~~~~~q~~G~~~g~~kGr~mp~H~~s~~~~i~~~sg~lGtqlp~AvG~A~A~kl~g~~~vvv~ 264 (317)
|++||+||++|+||+++.++|+|+||+.+|+++||+||||++++++|+++.+++||+|+|+|+|+|+|.|+++++.+++|
T Consensus 86 ~~~yR~hg~~la~G~~~~~~~ae~~g~~~g~~~GrggsmH~~~~~~~~~~~~~~vG~~~p~A~G~A~A~k~~~~~~v~v~ 165 (362)
T PLN02269 86 ITAYRDHCTHLGRGGTVLEVFAELMGRKDGCSRGKGGSMHFYKKDANFYGGHGIVGAQVPLGAGLAFAQKYNKEENVAFA 165 (362)
T ss_pred EechhhHHHHHHcCCCHHHHHHHHcCCCCCCCCCCCCcccccchhcCccccCchhhccccHHHHHHHHHHHhCCCCeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCccCccchHHHHHHHHHHcCCCEEEEEecCCccccccccccccCcccc
Q 021087 265 YTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNNFEAMVLLLRVVHMVSEAY 316 (317)
Q Consensus 265 ~~GDGatseGdfhE~ALN~Aa~~~lPvVFV~eNNgyAIStP~~~~~~~~~~~ 316 (317)
+||||+++||+||| |||+|++|+|||||||+||+|+||||++++...+.++
T Consensus 166 ~~GDGa~~eG~~~E-aln~A~~~~lPvvfvveNN~~aist~~~~~~~~~~~~ 216 (362)
T PLN02269 166 LYGDGAANQGQLFE-ALNIAALWDLPVIFVCENNHYGMGTAEWRAAKSPAYY 216 (362)
T ss_pred EECCCCcccCHHHH-HHHHhhccCcCEEEEEeCCCEeccCchhhhccchHHH
Confidence 99999999999999 9999999999999999999999999998887766553
No 4
>CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed
Probab=100.00 E-value=9.1e-54 Score=414.08 Aligned_cols=192 Identities=18% Similarity=0.262 Sum_probs=184.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc-cccccCCchHHHHHHHHhccCCCCeeecCCchHHHHHHhCCCH
Q 021087 123 DFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRF-SFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTL 201 (317)
Q Consensus 123 ~~~~ls~e~l~~lYr~M~~~R~~D~~~~~lqrqGri-gfy~~~~GqEA~~VG~a~AL~~~D~v~~~YR~~g~~l~rG~~l 201 (317)
+.+.+++|+++++||.|+++|.||+++.+++|||+| ||+|+++||||++||++.+|+++||+|++||+||++|+||+++
T Consensus 13 ~~~~~~~~~ll~~y~~M~~~R~~e~~~~~~~~~g~i~g~~~~~~GqEa~~vg~~~al~~~D~~~~~yR~~~~~la~G~~~ 92 (341)
T CHL00149 13 NENNINSMWLLVLYEDMLLGRNFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGVIKLLAETDYVCSTYRDHVHALSKGVPP 92 (341)
T ss_pred cccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCCChHHHHHHHHHhCCCCCEEEcccccHHHHHHcCCCH
Confidence 445689999999999999999999999999999999 8999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCCCCCCCCCcccCCCCCcccccCCCCCCCchhhhhHHhhhhhcC-------CCcEEEEEEcCCccCcc
Q 021087 202 QQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEK-------KDACAVAYTGDGGTSEQ 274 (317)
Q Consensus 202 ~~~~~q~~G~~~g~~kGr~mp~H~~s~~~~i~~~sg~lGtqlp~AvG~A~A~kl~g-------~~~vvv~~~GDGatseG 274 (317)
.++|+|+||+.+|+++||+|+||+++++.++++.++++|.|+|+|+|+|+|.|+++ .+++|+|++|||++++|
T Consensus 93 ~~~~ae~~g~~~g~~~Gr~gs~H~~~~~~~~~~~~g~lG~~lp~AvGaa~A~k~~~~~~~~~~~~~vvv~~~GDGa~~~G 172 (341)
T CHL00149 93 KNVMAELFGKETGCSRGRGGSMHIFSAPHNFLGGFAFIGEGIPIALGAAFQSIYRQQVLKEVQPLRVTACFFGDGTTNNG 172 (341)
T ss_pred HHHHHHHcCCCCCCCCCCCCCccccchhcCccCCChhhhccHHHHHHHHHHHHHhccccccCCCCCEEEEEeCCchhhhc
Confidence 99999999999999999999999999999999999999999999999999999987 48999999999999999
Q ss_pred chHHHHHHHHHHcCCCEEEEEecCCccccccccccccCccc
Q 021087 275 LWKPLSSSSVATMAGPLVPIYQNNFEAMVLLLRVVHMVSEA 315 (317)
Q Consensus 275 dfhE~ALN~Aa~~~lPvVFV~eNNgyAIStP~~~~~~~~~~ 315 (317)
+||| +||+|++|+|||||||+||+|+|++|.+.++..+++
T Consensus 173 ~~~E-aln~A~~~~LPvifvv~NN~~~i~~~~~~~~~~~d~ 212 (341)
T CHL00149 173 QFFE-CLNMAVLWKLPIIFVVENNQWAIGMAHHRSTSIPEI 212 (341)
T ss_pred HHHH-HHHHHhhcCCCEEEEEEeCCeeeecchhheeCCccH
Confidence 9999 999999999999999999999999998887765554
No 5
>TIGR03182 PDH_E1_alph_y pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=100.00 E-value=2.7e-53 Score=406.26 Aligned_cols=186 Identities=24% Similarity=0.380 Sum_probs=180.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcc-cccccCCchHHHHHHHHhccCCCCeeecCCchHHHHHHhCCCHHHHHHH
Q 021087 129 KEVAVKMYSHMVTLQVMDSVLYEAQRQGRF-SFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQ 207 (317)
Q Consensus 129 ~e~l~~lYr~M~~~R~~D~~~~~lqrqGri-gfy~~~~GqEA~~VG~a~AL~~~D~v~~~YR~~g~~l~rG~~l~~~~~q 207 (317)
+|+++++||+|+++|.+|+++.+++|||+| +|+|++.||||++||++.+|+++||+|++||+|+++|+||+++.++|+|
T Consensus 1 ~~~l~~~y~~M~~~R~~d~~~~~l~~~g~~~~~~~~~~GqEa~~vg~~~al~~~D~~~~~yR~~~~~la~G~~~~~~~~~ 80 (315)
T TIGR03182 1 KEELLELYRDMLLIRRFEEKAGQLYGMGKIGGFCHLYIGQEAVAVGLIAALKPDDYVITSYRDHGHALARGVPPKEVMAE 80 (315)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhCCccccccCCCCChHHHHHHHHHhCCCCCEEEechhhHHHHHHcCCCHHHHHHH
Confidence 478999999999999999999999999999 7999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCCCCCCCCCCcccCCCCCcccccCCCCCCCchhhhhHHhhhhhcCCCcEEEEEEcCCccCccchHHHHHHHHHHc
Q 021087 208 VFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLSSSSVATM 287 (317)
Q Consensus 208 ~~G~~~g~~kGr~mp~H~~s~~~~i~~~sg~lGtqlp~AvG~A~A~kl~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~ 287 (317)
++|+.+|+++||+||+|++++++|+++.++++|.|+|+|+|+|+|.|+++.+++|+|++|||++++|.||| +||+|++|
T Consensus 81 ~~g~~~g~~~Gr~g~~h~~~~~~~~~~~~g~~G~~lp~AiGaa~A~~~~~~~~~vv~~~GDGa~~~g~~~e-aln~A~~~ 159 (315)
T TIGR03182 81 LTGRATGCSKGKGGSMHMFDREKNFYGGHGIVGAQVPLATGLAFANKYRGNDNVTACFFGDGAANQGQFYE-SFNMAALW 159 (315)
T ss_pred HcCCCCCCCCCCCCCCCcCchhhCcccCcCcccccccHHHHHHHHHHHhCCCCEEEEEeCCCcccccHHHH-HHHHhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred CCCEEEEEecCCccccccccccccCccc
Q 021087 288 AGPLVPIYQNNFEAMVLLLRVVHMVSEA 315 (317)
Q Consensus 288 ~lPvVFV~eNNgyAIStP~~~~~~~~~~ 315 (317)
++|+||||+||+|+|++|...+...+++
T Consensus 160 ~lPvi~vv~NN~yg~s~~~~~~~~~~~~ 187 (315)
T TIGR03182 160 KLPVIFVIENNLYAMGTSVERSSSVTDL 187 (315)
T ss_pred CcCEEEEEEcCCccccCCHHHHhCCcCH
Confidence 9999999999999999998877665544
No 6
>PLN02374 pyruvate dehydrogenase (acetyl-transferring)
Probab=100.00 E-value=6.9e-52 Score=412.08 Aligned_cols=193 Identities=22% Similarity=0.294 Sum_probs=184.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc-cccccCCchHHHHHHHHhccCCCCeeecCCchHHHHHHhCCCH
Q 021087 123 DFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRF-SFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTL 201 (317)
Q Consensus 123 ~~~~ls~e~l~~lYr~M~~~R~~D~~~~~lqrqGri-gfy~~~~GqEA~~VG~a~AL~~~D~v~~~YR~~g~~l~rG~~l 201 (317)
..+.+++|+++++||+|+++|.||+++.++++||+| ||+|++.||||++||++++|+++||||++||+|+++|+||+++
T Consensus 79 ~~~~ls~e~ll~lyr~M~~~R~fEe~~~~l~~~Gki~g~~h~~~GqEA~~vg~~~aL~~~D~v~~~yR~h~~~La~G~~~ 158 (433)
T PLN02374 79 SDLLVTREEGLELYEDMVLGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKDDSVVSTYRDHVHALSKGVPA 158 (433)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceeccCCCCCcHHHHHHHHHHcCCCCEEEccCcChHHhhhcCCCH
Confidence 345789999999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCCCCCCCCCcccCCCCCcccccCCCCCCCchhhhhHHhhhhhcC-------CCcEEEEEEcCCccCcc
Q 021087 202 QQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEK-------KDACAVAYTGDGGTSEQ 274 (317)
Q Consensus 202 ~~~~~q~~G~~~g~~kGr~mp~H~~s~~~~i~~~sg~lGtqlp~AvG~A~A~kl~g-------~~~vvv~~~GDGatseG 274 (317)
+++|+|++|+.+|.++||+|+||+.++++|+++.+++||.|+|+|+|+|+|.|+++ .+++|+|++|||++++|
T Consensus 159 ~~~mael~Gk~~g~~~GrggsmH~~~~~~~~~g~~g~lG~~lP~AvGaA~A~k~~~~~~~~~~~~~vvv~~~GDGa~~eG 238 (433)
T PLN02374 159 RAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFSSKYRREVLKEESCDDVTLAFFGDGTCNNG 238 (433)
T ss_pred HHHHHHHcCCCCCCCCCCCCcCccCchhhCCCCCceeccCchhHHHHHHHHHHHhhccccccCCCCEEEEEECCCccccC
Confidence 99999999999999999999999999999999999999999999999999999986 48899999999999999
Q ss_pred chHHHHHHHHHHcCCCEEEEEecCCccccccccccccCcccc
Q 021087 275 LWKPLSSSSVATMAGPLVPIYQNNFEAMVLLLRVVHMVSEAY 316 (317)
Q Consensus 275 dfhE~ALN~Aa~~~lPvVFV~eNNgyAIStP~~~~~~~~~~~ 316 (317)
+||| +||+|++|+|||||||+||+|+|++|...++..++++
T Consensus 239 ~f~E-aLn~A~~~~LPvIfVV~NN~yaig~~~~~~t~~~dia 279 (433)
T PLN02374 239 QFFE-CLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPEIW 279 (433)
T ss_pred hHHH-HHHHHHHhCCCEEEEEeCCCEeecceeeeccCCCCHH
Confidence 9999 9999999999999999999999999998887655543
No 7
>TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=100.00 E-value=1.9e-50 Score=390.44 Aligned_cols=199 Identities=32% Similarity=0.457 Sum_probs=186.4
Q ss_pred CceEEeCCCCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCchHHHHHHHHhccCCCCeeec
Q 021087 107 PCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILP 186 (317)
Q Consensus 107 p~~rvld~~G~~~~~~~~~~ls~e~l~~lYr~M~~~R~~D~~~~~lqrqGrigfy~~~~GqEA~~VG~a~AL~~~D~v~~ 186 (317)
|+|||||.+|.+.++...+.+++|+++++||+|+++|.||+++.++++||+|+|+|+++||||++||++.+|+++||+|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~m~~~R~~e~~~~~~~~~g~i~~~~~~~GqEa~~vg~~~al~~~D~~~~ 80 (341)
T TIGR03181 1 ELVQVLDEDGNVVDPEPAPDLSDEELVELYRDMVLTRRFDTKALALQRQGRLGTYAPNLGQEAAQVGSALALRKDDWVFP 80 (341)
T ss_pred CceEEECCCCCcCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCceecccCCCChHHHHHHHHHHcCCCCEEEc
Confidence 68999999999877666678999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHhCCCHHHHHHHHhhCCCCCCCCCCCCcccCCCCCcccccCCCCCCCchhhhhHHhhhhhcCCCcEEEEEE
Q 021087 187 QYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYT 266 (317)
Q Consensus 187 ~YR~~g~~l~rG~~l~~~~~q~~G~~~g~~kGr~mp~H~~s~~~~i~~~sg~lGtqlp~AvG~A~A~kl~g~~~vvv~~~ 266 (317)
+||+||++|+||+++.++|++++|+.+| +.+ ++++|+++.++++|.|+|+|+|+|+|.|+.+.+++|+|++
T Consensus 81 ~yR~h~~~l~~G~~~~~~~ae~~g~~~g----~~~-----~~~~~~~g~~~~vG~~lp~AiGaAla~k~~~~~~~vv~~~ 151 (341)
T TIGR03181 81 SYRDHAAMLARGVPLVEILLYWRGDERG----SWD-----PEGVNILPPNIPIGTQYLHAAGVAYALKLRGEDNVAVTYF 151 (341)
T ss_pred chhhHHHHHHcCCCHHHHHHHhcCcCcC----CCC-----chhcCccCCCchHhcchhHHHhHHHHHHhhCCCCEEEEEe
Confidence 9999999999999999999999998854 322 4789999999999999999999999999999999999999
Q ss_pred cCCccCccchHHHHHHHHHHcCCCEEEEEecCCccccccccccccCccc
Q 021087 267 GDGGTSEQLWKPLSSSSVATMAGPLVPIYQNNFEAMVLLLRVVHMVSEA 315 (317)
Q Consensus 267 GDGatseGdfhE~ALN~Aa~~~lPvVFV~eNNgyAIStP~~~~~~~~~~ 315 (317)
|||++++|.||| +||+|+.|+|||||||+||+|+++++...+....++
T Consensus 152 GDGa~~~g~~~E-aL~tA~~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~ 199 (341)
T TIGR03181 152 GDGGTSEGDFYE-ALNFAGVFKAPVVFFVQNNQWAISVPRSKQTAAPTL 199 (341)
T ss_pred cCCccccChHHH-HHHHHhccCCCEEEEEECCCCccccchhhhhCCcCH
Confidence 999999999999 999999999999999999999999998766554443
No 8
>cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC). PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine).
Probab=100.00 E-value=7.4e-50 Score=377.84 Aligned_cols=179 Identities=32% Similarity=0.498 Sum_probs=173.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCccc-ccccCCchHHHHHHHHhccCCCCeeecCCchHHHHHHhCCCHHHHHHHHhhCCC
Q 021087 135 MYSHMVTLQVMDSVLYEAQRQGRFS-FYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKA 213 (317)
Q Consensus 135 lYr~M~~~R~~D~~~~~lqrqGrig-fy~~~~GqEA~~VG~a~AL~~~D~v~~~YR~~g~~l~rG~~l~~~~~q~~G~~~ 213 (317)
+||.|+++|.+|+++.+++|||++. |+|++.||||++||++.+|+++||++++||+|+++|+||+++.++|+|++|+.+
T Consensus 1 ~y~~m~~~R~~e~~~~~~~~~g~~~~~~~~~~GqEa~~vg~~~~l~~~D~~~~~yR~~~~~la~G~~~~~~~~e~~g~~~ 80 (293)
T cd02000 1 LYRTMVLIRRFDERLLELYRQGKIGGFYHLSIGQEAVAVGVAAALRPGDWVFPTYRDHGHALARGVDLKEMLAELFGKET 80 (293)
T ss_pred CHHHHHHHHHHHHHHHHHHHCCccccccCCCCChHHHHHHHHHHCCCCCEEEecchhHHHHHHcCCCHHHHHHHHcCCCC
Confidence 5999999999999999999999995 599999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcccCCCCCcccccCCCCCCCchhhhhHHhhhhhcCCCcEEEEEEcCCccCccchHHHHHHHHHHcCCCEEE
Q 021087 214 DDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLSSSSVATMAGPLVP 293 (317)
Q Consensus 214 g~~kGr~mp~H~~s~~~~i~~~sg~lGtqlp~AvG~A~A~kl~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~lPvVF 293 (317)
|+++||+||+|++++++|+++.++++|.++|+|+|+|+|.|+++.++++||++|||++++|.||| +||+|+.+++|+||
T Consensus 81 g~~~G~~g~~h~~~~~~~~~~~~g~lG~~~p~a~G~a~a~k~~~~~~~vv~~~GDGa~~~g~~~E-~l~~A~~~~lPvi~ 159 (293)
T cd02000 81 GPCKGRGGSMHIGDKEKNFFGGNGIVGGQVPLAAGAALALKYRGEDRVAVCFFGDGATNEGDFHE-ALNFAALWKLPVIF 159 (293)
T ss_pred CCCCCCCCCCCCCchhcCccccccccccchhHHHHHHHHHHHhCCCCEEEEEeCCCccccchHHH-HHHHHHhhCCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred EEecCCccccccccccccCcc
Q 021087 294 IYQNNFEAMVLLLRVVHMVSE 314 (317)
Q Consensus 294 V~eNNgyAIStP~~~~~~~~~ 314 (317)
||+||+|+|++|.+.+.+..+
T Consensus 160 vv~NN~~~i~~~~~~~~~~~~ 180 (293)
T cd02000 160 VCENNGYAISTPTSRQTAGTS 180 (293)
T ss_pred EEeeCCeeccCCHHHHhCCcc
Confidence 999999999999887664443
No 9
>KOG0225 consensus Pyruvate dehydrogenase E1, alpha subunit [Energy production and conversion]
Probab=100.00 E-value=2.4e-49 Score=378.16 Aligned_cols=191 Identities=24% Similarity=0.350 Sum_probs=185.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc-cccccCCchHHHHHHHHhccCCCCeeecCCchHHHHHHhCCCH
Q 021087 123 DFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRF-SFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTL 201 (317)
Q Consensus 123 ~~~~ls~e~l~~lYr~M~~~R~~D~~~~~lqrqGri-gfy~~~~GqEA~~VG~a~AL~~~D~v~~~YR~~g~~l~rG~~l 201 (317)
....+++|+++++|++|+++|+||..+..++++++| ||.|.+.||||++||.-+|+++.|-|+.+||+||+.+.||.++
T Consensus 52 ~s~~~t~ee~L~~Y~~M~~~RrmE~aad~lYK~k~IRGFCHLy~GQEAvavGme~ait~~D~iItsYR~Hg~~~~~G~S~ 131 (394)
T KOG0225|consen 52 TSVELTKEEALKYYRDMQTIRRMELAADQLYKAKKIRGFCHLYDGQEAVAVGMEAAITKSDSIITSYRCHGWTYLRGVSV 131 (394)
T ss_pred ceEEecHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhceeeeecccHHHHHHHHHHhccCCCceEEEeeeeeEEeecCccH
Confidence 344689999999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCCCCCCCCCcccCCCCCcccccCCCCCCCchhhhhHHhhhhhcCCCcEEEEEEcCCccCccchHHHHH
Q 021087 202 QQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLSS 281 (317)
Q Consensus 202 ~~~~~q~~G~~~g~~kGr~mp~H~~s~~~~i~~~sg~lGtqlp~AvG~A~A~kl~g~~~vvv~~~GDGatseGdfhE~AL 281 (317)
.++|+|++|+.+|++||.+++||+..|+ |++.+++||.|+|+++|+|+|.|+++++.|++++.||||+++|.++| |+
T Consensus 132 ~~v~aEL~Gr~~Gc~kGKGGSMHmy~k~--FyGGnGIVGAQiPLGaGia~A~kY~~~~~v~~alYGDGAaNQGQ~fE-a~ 208 (394)
T KOG0225|consen 132 REVLAELMGRQAGCSKGKGGSMHMYAKN--FYGGNGIVGAQIPLGAGIAFAQKYNREDAVCFALYGDGAANQGQVFE-AF 208 (394)
T ss_pred HHHHHHHhccccccccCCCcceeeeccc--ccCccceeccCCCccccHHHHHHhccCCceEEEEeccccccchhHHH-Hh
Confidence 9999999999999999999999999876 99999999999999999999999999999999999999999999999 99
Q ss_pred HHHHHcCCCEEEEEecCCccccccccccccCcccc
Q 021087 282 SSVATMAGPLVPIYQNNFEAMVLLLRVVHMVSEAY 316 (317)
Q Consensus 282 N~Aa~~~lPvVFV~eNNgyAIStP~~~~~~~~~~~ 316 (317)
|+|+.|+||+|||||||+|++.|+.+......++|
T Consensus 209 NMA~LW~LP~IFvCENN~yGMGTs~~Rasa~teyy 243 (394)
T KOG0225|consen 209 NMAALWKLPVIFVCENNHYGMGTSAERASASTEYY 243 (394)
T ss_pred hHHHHhCCCEEEEEccCCCccCcchhhhhcChHHH
Confidence 99999999999999999999999999999888877
No 10
>PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex. Pyruvate dehydrogenase (1.2.4.1 from EC), a component of the multienzyme pyruvate dehydrogenase complex; 2-oxoglutarate dehydrogenase (1.2.4.2 from EC), a component of the multienzyme 2-oxoglutarate dehydrogenase which contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3); and 2-oxoisovalerate dehydrogenase (1.2.4.4 from EC), a component of the multienzyme branched-chain alpha-keto dehydrogenase complex all belong to this family.; GO: 0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 0008152 metabolic process; PDB: 1X7Y_A 1V1M_A 1X7W_A 1OLU_A 2J9F_A 2BEW_A 1V11_A 2BFE_A 1U5B_A 2BEU_A ....
Probab=100.00 E-value=5e-49 Score=374.76 Aligned_cols=179 Identities=33% Similarity=0.530 Sum_probs=171.4
Q ss_pred HHHHHHHHHHHHHHHHHHhcCcccccccCCchHHHHHHHHhccCCCCeeecCCchHHHHHHhCCCHHHHHHHHhhCCCCC
Q 021087 136 YSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADD 215 (317)
Q Consensus 136 Yr~M~~~R~~D~~~~~lqrqGrigfy~~~~GqEA~~VG~a~AL~~~D~v~~~YR~~g~~l~rG~~l~~~~~q~~G~~~g~ 215 (317)
||.|++.|..|.++..+++||+.||++++.||||++||++.+|+++||||++||+|+++|+||+++.++|+|++|+..+.
T Consensus 1 y~~m~~~r~~d~~~~~~~~~~~~g~~~~~~GqEa~~v~~~~~l~~~D~v~~~yR~~~~~la~g~~~~~~~~e~~g~~~g~ 80 (300)
T PF00676_consen 1 YRMMLIRRFEDERARKLQRQGRFGFYHLSAGQEAIQVAAAAALRPGDWVFPYYRDHGHALARGIDLEEIFAELLGKAKGH 80 (300)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSSSCTT-TTTCHHHHHHHHHHSCTTSEEEECSTTHHHHHHTTT-HHHHHHHHHTBTTST
T ss_pred CchHHHHHHHHHHHHHHhhCCCeEEecchHHHHHHHHHHHHhccCCCEEEecccchhhhhhccccccchhHHhcCcccCC
Confidence 78888888889999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCCCCCcccCCCCCcccccCCCCCCCchhhhhHHhhhhhcCCCcEEEEEEcCCccCccchHHHHHHHHHHcCCCEEEEE
Q 021087 216 GKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLSSSSVATMAGPLVPIY 295 (317)
Q Consensus 216 ~kGr~mp~H~~s~~~~i~~~sg~lGtqlp~AvG~A~A~kl~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~lPvVFV~ 295 (317)
++|++ ++|+.++++++++.++++|.|+|+|+|+|+|.|+++++.|++|+||||+++||+||| +||+|++|+|||||||
T Consensus 81 ~g~~~-~~~~~~~~~~~~~~~~~vg~~~p~a~G~A~a~k~~~~~~v~v~~~GDga~~qG~~~E-alN~A~~~~lPvifvv 158 (300)
T PF00676_consen 81 GGGRH-PLHFSDKGLNILGASSPVGAQVPIAAGVALAIKYRGKDGVVVCFFGDGATSQGDFHE-ALNLAALWKLPVIFVV 158 (300)
T ss_dssp TTTGC-TTEEEBTTTTBEEEESSTTTHHHHHHHHHHHHHHTTSSEEEEEEEETGGGGSHHHHH-HHHHHHHTTTSEEEEE
T ss_pred CCCcc-ccccccccceeeeccccccccCccccchhHhhhhcCCceeEEEEecCcccccCccHH-HHHHHhhccCCeEEEE
Confidence 88988 899999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred ecCCccccccccccccCcccc
Q 021087 296 QNNFEAMVLLLRVVHMVSEAY 316 (317)
Q Consensus 296 eNNgyAIStP~~~~~~~~~~~ 316 (317)
+||+|+||||.+++++.++++
T Consensus 159 eNN~~aist~~~~~~~~~~~~ 179 (300)
T PF00676_consen 159 ENNQYAISTPTEEQTASPDIA 179 (300)
T ss_dssp EEESEETTEEHHHHCSSSTSG
T ss_pred ecCCcccccCccccccccchh
Confidence 999999999999999887765
No 11
>PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed
Probab=100.00 E-value=4.3e-33 Score=297.33 Aligned_cols=180 Identities=12% Similarity=0.027 Sum_probs=160.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCchHHHHHHHHh------ccCCCCeeec-CCchHHHHHH--
Q 021087 126 QVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAA------ALSADDFILP-QYREPGVLLW-- 196 (317)
Q Consensus 126 ~ls~e~l~~lYr~M~~~R~~D~~~~~lqrqGrigfy~~~~GqEA~~VG~a~------AL~~~D~v~~-~YR~~g~~l~-- 196 (317)
.+++|+.+++|+.|+++|.||+.+...+..+++. +..|||++.+|+.. +++++|+|++ .||+|+..|+
T Consensus 185 ~~s~e~~~~il~~m~~~r~fE~fl~~~f~~~Krf---~~eG~Ea~i~gl~~li~~a~~lg~~D~vigmaHRgrlnvLa~v 261 (924)
T PRK09404 185 SFSAEEKKAILERLTAAEGFERFLHTKFVGQKRF---SLEGGESLIPMLDEIIRRAGKLGVKEIVIGMAHRGRLNVLVNV 261 (924)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCcc---cccchhhHHHHHHHHHHHHHhCCCCCEEEecCcCchHHHHHHh
Confidence 7899999999999999999999999999988765 67999999999988 6668999999 6999999999
Q ss_pred hCCCHHHHHHHHhhCC-------CCCCC----------CCCCCcccCCCCCcccccCCCCCCCchhhhhHHhhhhhcCCC
Q 021087 197 RGYTLQQFANQVFANK-------ADDGK----------GRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKD 259 (317)
Q Consensus 197 rG~~l~~~~~q~~G~~-------~g~~k----------Gr~mp~H~~s~~~~i~~~sg~lGtqlp~AvG~A~A~kl~g~~ 259 (317)
+|.++.++|+|++|+. +|.+| |++++||+.... ..|+|+.+.|+|+|.|+|.|+++.+
T Consensus 262 ~G~~~~~ifaEf~Gk~~~~~~~~~GdvkyHlG~~~~~~g~gg~mhi~l~~-----npShleav~Pva~G~A~A~q~~~~~ 336 (924)
T PRK09404 262 LGKPPRDLFAEFEGKHGPDEVLGSGDVKYHLGFSSDRETDGGEVHLSLAF-----NPSHLEIVNPVVEGSVRARQDRRGD 336 (924)
T ss_pred cCCCHHHHHHHHcCCCCCCCCCCCCCcccccCccccccCCCCeeEeeccC-----CccccccccCeehhHHHHHHHhcCC
Confidence 5999999999999997 44444 667777775543 2389999999999999999999888
Q ss_pred ------cEEEEEEcCCcc-CccchHHHHHHHHHHcCCC---EEEEEecCCccccccccccccCcc
Q 021087 260 ------ACAVAYTGDGGT-SEQLWKPLSSSSVATMAGP---LVPIYQNNFEAMVLLLRVVHMVSE 314 (317)
Q Consensus 260 ------~vvv~~~GDGat-seGdfhE~ALN~Aa~~~lP---vVFV~eNNgyAIStP~~~~~~~~~ 314 (317)
.|+||++||||+ +||.||| +||+|++|++| +||||+||+|+++||.+++++...
T Consensus 337 ~~~~~~~v~v~~~GDgA~agqG~v~E-alNlA~l~~lp~ggvIfvveNNq~g~tT~~~~~~s~~~ 400 (924)
T PRK09404 337 GQDRKKVLPILIHGDAAFAGQGVVAE-TLNLSQLRGYRTGGTIHIVINNQIGFTTSPPDDRSTPY 400 (924)
T ss_pred cccccceEEEEEecCccccCCChHHH-HHHHHHhcCCCCCCEEEEEEeCCEEEeeCHHHhccchh
Confidence 899999999998 7999999 99999999998 999999999999999988866543
No 12
>cd02016 TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC). OGDC catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA and carbon dioxide, a key reaction of the tricarboxylic acid cycle.
Probab=99.97 E-value=2.6e-32 Score=256.96 Aligned_cols=153 Identities=14% Similarity=0.090 Sum_probs=141.5
Q ss_pred cCCchHHHHHHHHhccCC------CCeeecC-CchHHHHHH--hCCCHHHHHHHHhhCCC---CCCCCCCCCcccCCCC-
Q 021087 163 TTIGEEAINIGSAAALSA------DDFILPQ-YREPGVLLW--RGYTLQQFANQVFANKA---DDGKGRQMPIHYGSKK- 229 (317)
Q Consensus 163 ~~~GqEA~~VG~a~AL~~------~D~v~~~-YR~~g~~l~--rG~~l~~~~~q~~G~~~---g~~kGr~mp~H~~s~~- 229 (317)
+..|+|++++++...+++ +|+|++. ||++...|. +|++++++|+|++|+.+ +.+.|+++..|++.+.
T Consensus 16 s~eG~Es~~~~l~~~~~~~~~~~~~d~v~gm~HRgrln~L~~~lg~~~~~if~ef~g~~~~~~~~~~~gdv~yHlg~~~~ 95 (265)
T cd02016 16 GLEGAESLIPALDELIDRAAELGVEEVVIGMAHRGRLNVLANVLGKPLEQIFSEFEGKSEFPEDDEGSGDVKYHLGYSSD 95 (265)
T ss_pred EecCHHHHHHHHHHHHHHHHhcCCCeEEeccCcCCcHHHHHHHhCCCHHHHHHHhhCCCCCCCCCCCCCCcCcCCccCcc
Confidence 589999999999999987 7999999 999999999 99999999999999887 5567999999998665
Q ss_pred ----------CcccccCCCCCCCchhhhhHHhhhhhcC-----CCcEEEEEEcCCcc-CccchHHHHHHHHHHcCCC---
Q 021087 230 ----------LNYITISSPIATQLPQAVGVAYSLKMEK-----KDACAVAYTGDGGT-SEQLWKPLSSSSVATMAGP--- 290 (317)
Q Consensus 230 ----------~~i~~~sg~lGtqlp~AvG~A~A~kl~g-----~~~vvv~~~GDGat-seGdfhE~ALN~Aa~~~lP--- 290 (317)
.++.+..|+||+++|+|+|+|+|.|+++ ++.|+||++||||+ +||.||| +||+|++|++|
T Consensus 96 ~~~~~~~~~~~~l~~npS~l~~~~pva~G~A~A~k~~~~~~~~~~~v~v~~~GDgA~~~qG~~~E-alNlA~l~~lp~gg 174 (265)
T cd02016 96 RKTPSGKKVHLSLAPNPSHLEAVNPVVMGKTRAKQDYRGDGERDKVLPILIHGDAAFAGQGVVYE-TLNLSNLPGYTTGG 174 (265)
T ss_pred cccCCCCeeEEEecCCCcccccccCeehhHHHHHHHhcCCccCCCeEEEEEecCccccCCChHHH-HHHHHHhcCCCCCC
Confidence 6788999999999999999999999998 48899999999995 6999999 99999999999
Q ss_pred EEEEEecCCccccccccccccCcccc
Q 021087 291 LVPIYQNNFEAMVLLLRVVHMVSEAY 316 (317)
Q Consensus 291 vVFV~eNNgyAIStP~~~~~~~~~~~ 316 (317)
+||||+||+|+|+||.+++++...++
T Consensus 175 ~ifvveNNq~g~sT~~~~~~~~~~~~ 200 (265)
T cd02016 175 TIHIVVNNQIGFTTDPRDSRSSPYCT 200 (265)
T ss_pred EEEEEEeCCEEEEecHHHhcccccHH
Confidence 99999999999999999998766543
No 13
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=99.96 E-value=4.8e-29 Score=256.22 Aligned_cols=170 Identities=14% Similarity=0.128 Sum_probs=146.7
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc-cccccCCchHHHHHHHHhccC---CCCeee--cCCchHHH
Q 021087 120 KGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRF-SFYLTTIGEEAINIGSAAALS---ADDFIL--PQYREPGV 193 (317)
Q Consensus 120 ~~~~~~~ls~e~l~~lYr~M~~~R~~D~~~~~lqrqGri-gfy~~~~GqEA~~VG~a~AL~---~~D~v~--~~YR~~g~ 193 (317)
.|.+..+|+.++|.++-... |-.-+++++++ |+++++.|+ +.++++.++. |+|+|+ +.||+|++
T Consensus 8 ~p~d~~~l~~~~l~~l~~~i--------r~~~~~~~~~~~Gh~~~~lg~--vel~~al~~~f~~~~D~ii~d~ghr~~~~ 77 (581)
T PRK12315 8 SPADLKKLSLDELEQLASEI--------RTALLEKDSAHGGHVGPNLGV--VELTIALHYVFNSPKDKIVWDVSHQSYPH 77 (581)
T ss_pred CHHHHhhCCHHHHHHHHHHH--------HHHHHHHHHhcCCCcCcchhH--HHHHHHHHhhcCCCCCcEEEecCCchHHH
Confidence 34556678888877776644 55556666788 699999999 5556666665 899999 99999999
Q ss_pred HHHhCCCHHHHHHHHhhCCCCCCCCCCCCcccCCCCCcccccCCCCCCCchhhhhHHhhhhhcCCCcEEEEEEcCCccCc
Q 021087 194 LLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSE 273 (317)
Q Consensus 194 ~l~rG~~l~~~~~q~~G~~~g~~kGr~mp~H~~s~~~~i~~~sg~lGtqlp~AvG~A~A~kl~g~~~vvv~~~GDGatse 273 (317)
.|.+|.++..++.+++|+.+|++++++. .|. ++ .++++|+++++|+|+|+|.|+++++.+++|++|||+++|
T Consensus 78 ~l~~G~~~~~~~~~~~g~~~G~~~~~~s-~~~------~~-~~g~~~~~ls~A~G~A~A~k~~~~~~~vv~~iGDG~~~e 149 (581)
T PRK12315 78 KMLTGRKEAFLDPDHYDDVTGYTNPEES-EHD------FF-TVGHTSTSIALATGLAKARDLKGEKGNIIAVIGDGSLSG 149 (581)
T ss_pred HHHcCCccchhhHHHcCCCCCCCCCCCC-CCC------Cc-CCCcHHHHHHHHHHHHHHHHhcCCCCeEEEEECchhhhc
Confidence 9999999999999999999999998873 331 22 568899999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHcCCCEEEEEecCCccccccccc
Q 021087 274 QLWKPLSSSSVATMAGPLVPIYQNNFEAMVLLLRV 308 (317)
Q Consensus 274 GdfhE~ALN~Aa~~~lPvVFV~eNNgyAIStP~~~ 308 (317)
|.+|| |||+|+.|++|+||||+||+|+|++|+..
T Consensus 150 G~~~E-Aln~A~~~k~~li~Ii~dN~~si~~~~~~ 183 (581)
T PRK12315 150 GLALE-GLNNAAELKSNLIIIVNDNQMSIAENHGG 183 (581)
T ss_pred chHHH-HHHHHHhhCCCEEEEEECCCCcCCCCCch
Confidence 99999 99999999999999999999999999853
No 14
>TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component. The E1 ortholog from Corynebacterium glutamicum is unusual in having an N-terminal extension that resembles the dihydrolipoamide succinyltransferase (E2) component of 2-oxoglutarate dehydrogenase.
Probab=99.91 E-value=3.4e-24 Score=229.04 Aligned_cols=186 Identities=14% Similarity=0.067 Sum_probs=156.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcccccccCCchHHHHHHHHh------ccCCCCeeecC-CchHHHHH
Q 021087 124 FQQVSKEVAVKMYSHMVTLQVMDSVLYEAQ-RQGRFSFYLTTIGEEAINIGSAA------ALSADDFILPQ-YREPGVLL 195 (317)
Q Consensus 124 ~~~ls~e~l~~lYr~M~~~R~~D~~~~~lq-rqGrigfy~~~~GqEA~~VG~a~------AL~~~D~v~~~-YR~~g~~l 195 (317)
.+.+++|+-+++++.++..-.||.-+..-+ .|.|. +--|-|..-.+.-. .+.-+|+|++. ||++...|
T Consensus 183 ~~~~~~~~k~~il~~L~~ae~fE~fl~~kf~g~KRF----slEG~eslip~l~~~i~~~~~~gv~d~v~gmaHRGRlnvL 258 (929)
T TIGR00239 183 RAQFNSEEKKRFLSRLTAAEGFERFLGAKFPGAKRF----SLEGLDALVPMLKEIIRHSVNSGTRDVVLGMAHRGRLNVL 258 (929)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCcee----ecccHHHHHHHHHHHHHHHHHcCCCeEEeccccCCcHHHH
Confidence 357899999999999999999999886544 34443 23555665544433 34568999998 99999999
Q ss_pred H--hCCCHHHHHHHHhhCCCC-CCCCCCCC-cccCC-----------CCCcccccCCCCCCCchhhhhHHhhhhhcCC--
Q 021087 196 W--RGYTLQQFANQVFANKAD-DGKGRQMP-IHYGS-----------KKLNYITISSPIATQLPQAVGVAYSLKMEKK-- 258 (317)
Q Consensus 196 ~--rG~~l~~~~~q~~G~~~g-~~kGr~mp-~H~~s-----------~~~~i~~~sg~lGtqlp~AvG~A~A~kl~g~-- 258 (317)
. +|.+++++|+|+.|+..+ .++|+++. .|++. .++.+.+..|+|+.+.|+|+|.|+|.++++.
T Consensus 259 ~nv~gkp~~~if~ef~g~~~~~~~~g~gdvKyHlg~~~~~~~~~~~~~~~~l~~npSHLeav~Pva~G~ArA~q~~~~~~ 338 (929)
T TIGR00239 259 VNVLGKPPEDIFSEFAGKHKSHLPDGTGDVKYHMGRFSSDFTTDGKLVHLALAFNPSHLEIVSPVVIGSTRARLDRLNDS 338 (929)
T ss_pred HHHhCCCHHHHHHHHcCCCCCcccCCCCCcCccCCCcccccccCCCcceeeecCCCcccccccchhhhHHHHHHHhcCCc
Confidence 9 999999999999998776 34588887 89885 5678889999999999999999999998865
Q ss_pred ----CcEEEEEEcCCcc-CccchHHHHHHHHHHcCCCE---EEEEecCCccccccccccccCcc
Q 021087 259 ----DACAVAYTGDGGT-SEQLWKPLSSSSVATMAGPL---VPIYQNNFEAMVLLLRVVHMVSE 314 (317)
Q Consensus 259 ----~~vvv~~~GDGat-seGdfhE~ALN~Aa~~~lPv---VFV~eNNgyAIStP~~~~~~~~~ 314 (317)
+.|+||++||||+ +||.||| +||+|++|++|| ||||+||+|+|+||.+++++...
T Consensus 339 ~~~~~~v~v~~~GDgA~agQG~v~E-aLNlA~l~~lPvGGtIfvveNNqyg~tT~~~~~~s~~~ 401 (929)
T TIGR00239 339 PESTKVLAILIHGDAAFAGQGVVQE-TLNMSKLRGYSVGGTIHIIINNQIGFTTNPLDARSTPY 401 (929)
T ss_pred ccccceEEEEEeccccccCCChHHH-HHHHHHhcCCCCCCEEEEEEeCCEEEEEcHHHhcCccC
Confidence 6799999999995 8999999 999999999997 99999999999999887776543
No 15
>COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]
Probab=99.85 E-value=9.6e-21 Score=174.27 Aligned_cols=176 Identities=15% Similarity=0.105 Sum_probs=154.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCchHHHHHHHHhccC--C-------CCeeecCCchHH------HHH
Q 021087 131 VAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALS--A-------DDFILPQYREPG------VLL 195 (317)
Q Consensus 131 ~l~~lYr~M~~~R~~D~~~~~lqrqGrigfy~~~~GqEA~~VG~a~AL~--~-------~D~v~~~YR~~g------~~l 195 (317)
...++-+....+|.-..+|...+.+|+.|--++.. |..+|.+...|+ | +|+++.+ .+|+ .+.
T Consensus 6 ~~~~L~~~A~~iRr~~v~m~~~~~~GH~G~SLS~~--eILa~LYf~~m~~~p~~p~~~~RDrfiLS-KGHaa~AlYa~La 82 (243)
T COG3959 6 SVDELERIAREIRRNIVRMLANAGSGHVGGSLSVV--EILAVLYFKIMNIDPDDPKWPGRDRFILS-KGHAAPALYATLA 82 (243)
T ss_pred cHHHHHHHHHHHHHHHHHHhcccCCCCcCccchHH--HHHHHHHHHHhccCCCCCCCCCCCeEEEe-cccchHHHHHHHH
Confidence 45566778888999999999999999887777777 888888888752 3 4688887 6666 566
Q ss_pred HhCCCHHHHHHHHhhCCCCCCCCCCCCcccC-CCCCcccccCCCCCCCchhhhhHHhhhhhcCCCcEEEEEEcCCccCcc
Q 021087 196 WRGYTLQQFANQVFANKADDGKGRQMPIHYG-SKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEQ 274 (317)
Q Consensus 196 ~rG~~l~~~~~q~~G~~~g~~kGr~mp~H~~-s~~~~i~~~sg~lGtqlp~AvG~A~A~kl~g~~~vvv~~~GDGatseG 274 (317)
.+|+-+++.+.. |++. |..+|+|.. .+.+++...+|+||+++++|+|+|+|.|+++.+..|++++|||+..||
T Consensus 83 e~G~~p~eeL~~-~~~~-----~srL~~Hp~~~~~pgve~stGSLGqGLsvavGmAlg~kl~~~~~~VyvilGDGEl~EG 156 (243)
T COG3959 83 EKGYFPEEELET-FRRI-----GSRLPGHPERNKTPGVEVSTGSLGQGLSVAVGMALGAKLKGSPYRVYVILGDGELDEG 156 (243)
T ss_pred HcCCCCHHHHHH-hccC-----CCcCCCCCccCCCCceeecCCcccccchHHHHHHHHHhhcCCCceEEEEecCcccccc
Confidence 799999999986 5776 788999986 477799999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHcCC-CEEEEEecCCccccccccccccCcccc
Q 021087 275 LWKPLSSSSVATMAG-PLVPIYQNNFEAMVLLLRVVHMVSEAY 316 (317)
Q Consensus 275 dfhE~ALN~Aa~~~l-PvVFV~eNNgyAIStP~~~~~~~~~~~ 316 (317)
..|| |+..|+.++| ++|.|++-|+.+++..++++.+.+++.
T Consensus 157 ~~WE-Aam~Aah~~L~NLiaivD~N~~QldG~t~~i~~~~pL~ 198 (243)
T COG3959 157 QVWE-AAMTAAHYKLDNLIAIVDRNKLQLDGETEEIMPKEPLA 198 (243)
T ss_pred cHHH-HHHHHHHhccCcEEEEEecCCcccCCchhhccCcchhH
Confidence 9999 9999999999 599999999999999999999999874
No 16
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=99.82 E-value=5.1e-20 Score=190.90 Aligned_cols=174 Identities=13% Similarity=0.098 Sum_probs=130.1
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCchHHHHHHHHhccC-CCCeeecC--CchHHHHHH
Q 021087 120 KGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALS-ADDFILPQ--YREPGVLLW 196 (317)
Q Consensus 120 ~~~~~~~ls~e~l~~lYr~M~~~R~~D~~~~~lqrqGrigfy~~~~GqEA~~VG~a~AL~-~~D~v~~~--YR~~g~~l~ 196 (317)
.|.+..+++.+++.++-. .+|..=..+.. ...|++|.-+++. |.+. +....++ +.|.++.+ |...++++.
T Consensus 6 ~p~dl~~l~~~~l~~la~---~iR~~~i~~~~-~~~GH~g~~ls~v--el~~-aL~~~~~~~rDr~i~s~GH~~Y~~~~~ 78 (617)
T TIGR00204 6 SPQELRLLSIDELEKLCD---ELRRYLLESVS-ASGGHLASGLGTV--ELTV-ALHYVFNTPKDQFIWDVGHQAYPHKLL 78 (617)
T ss_pred CHHHHhhCCHHHHHHHHH---HHHHHHHHHHh-ccCCCcCcchhHH--HHHH-HHHhhCCCCCCcEEEecchHHHHHHHH
Confidence 345566788887766544 34444444443 3667776665555 5554 4556787 78977774 666668888
Q ss_pred hCCCHHHHHHHHhhCCCCCCCCCCCCcccCCCCCccc-ccCCCCCCCchhhhhHHhhhhhcCCCcEEEEEEcCCccCccc
Q 021087 197 RGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYI-TISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEQL 275 (317)
Q Consensus 197 rG~~l~~~~~q~~G~~~g~~kGr~mp~H~~s~~~~i~-~~sg~lGtqlp~AvG~A~A~kl~g~~~vvv~~~GDGatseGd 275 (317)
+|+ .+.+..+ .+. |. ++.|..-.+.++. ..+|++|+++++|+|+|+|.|+++.+.+++|++|||+++||.
T Consensus 79 ~G~--~~~l~~~-r~~-----g~-l~g~p~~~e~~~d~~~~G~~g~~ls~a~G~A~a~~~~~~~~~v~~~~GDG~~~eG~ 149 (617)
T TIGR00204 79 TGR--REKFSTL-RQK-----KG-LHGFPKRSESEYDVFSAGHSSTSISAGLGIAVAAEKKGADRKTVCVIGDGAITAGM 149 (617)
T ss_pred hCc--HHHhcch-hhc-----CC-cCCCCcCCCCCCCccCCCchHhHHHHHHHHHHHHHhhCCCCEEEEEECCccccccc
Confidence 897 2334442 333 33 6667654444444 378999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHcCCCEEEEEecCCccccccccccc
Q 021087 276 WKPLSSSSVATMAGPLVPIYQNNFEAMVLLLRVVH 310 (317)
Q Consensus 276 fhE~ALN~Aa~~~lPvVFV~eNNgyAIStP~~~~~ 310 (317)
+|| |||+|+.+++|+||||+||+|+|++|++.+.
T Consensus 150 ~~E-a~~~a~~~~l~~i~ii~~N~~~i~~~~~~~~ 183 (617)
T TIGR00204 150 AFE-ALNHAGDLKTDMIVILNDNEMSISENVGALS 183 (617)
T ss_pred HHH-HHHHHHhcCCCEEEEEECCCcccCCCchHHH
Confidence 999 9999999999999999999999999997553
No 17
>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis. Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6).
Probab=99.82 E-value=7.2e-20 Score=164.81 Aligned_cols=118 Identities=13% Similarity=0.099 Sum_probs=94.3
Q ss_pred CCCeeecC--CchHHHHHHhCCCHHHHHHHHhhCCCCCCCCCCCCcccCCC-CCcccccCCCCCCCchhhhhHHhhhhhc
Q 021087 180 ADDFILPQ--YREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSK-KLNYITISSPIATQLPQAVGVAYSLKME 256 (317)
Q Consensus 180 ~~D~v~~~--YR~~g~~l~rG~~l~~~~~q~~G~~~g~~kGr~mp~H~~s~-~~~i~~~sg~lGtqlp~AvG~A~A~kl~ 256 (317)
+.|.++.+ |...+++...|. .+-+.+ |.+. |. ++.|.... ..++...++++|+++|+|+|+|+|.|++
T Consensus 24 ~rDr~ils~gH~~~~~~~~~g~--~~~l~~-~~~~-----~~-~~g~p~~~~~~~~~~~~G~lG~gl~~A~G~Ala~k~~ 94 (195)
T cd02007 24 PKDKIIWDVGHQAYPHKILTGR--RDQFHT-LRQY-----GG-LSGFTKRSESEYDAFGTGHSSTSISAALGMAVARDLK 94 (195)
T ss_pred CCCeEEEecccHHHHHHHHHCC--HHHHhh-hhcC-----CC-CCCCCcCCCCCCceECCCchhhhHHHHHHHHHHHHHh
Confidence 57887776 444444556675 333444 3333 33 66665332 2466778999999999999999999999
Q ss_pred CCCcEEEEEEcCCccCccchHHHHHHHHHHcCCCEEEEEecCCcccccccc
Q 021087 257 KKDACAVAYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNNFEAMVLLLR 307 (317)
Q Consensus 257 g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~lPvVFV~eNNgyAIStP~~ 307 (317)
++++.|+|++|||+++||.+|| |+|+|+.+++|+|+||+||+|+|++|++
T Consensus 95 ~~~~~vv~~~GDG~~~eG~~~E-al~~A~~~~~~li~vvdnN~~~~~~~~~ 144 (195)
T cd02007 95 GKKRKVIAVIGDGALTGGMAFE-ALNNAGYLKSNMIVILNDNEMSISPNVG 144 (195)
T ss_pred CCCCeEEEEEcccccccChHHH-HHHHHHHhCCCEEEEEECCCcccCCCCC
Confidence 9999999999999999999999 9999999999999999999999999875
No 18
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=99.82 E-value=6.2e-20 Score=191.35 Aligned_cols=165 Identities=16% Similarity=0.191 Sum_probs=129.6
Q ss_pred HHHHHHHHHHHHHHHhcCcccccccCCchHHHHHHHHhccC--CC-------CeeecCCchHH------HHHHhCC--CH
Q 021087 139 MVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALS--AD-------DFILPQYREPG------VLLWRGY--TL 201 (317)
Q Consensus 139 M~~~R~~D~~~~~lqrqGrigfy~~~~GqEA~~VG~a~AL~--~~-------D~v~~~YR~~g------~~l~rG~--~l 201 (317)
...+|..-.+|......|++|.-+++. |...+.....|+ |+ |.++.+ .+|+ ++...|+ +.
T Consensus 4 ~~~iR~~~~~~~~~a~~GH~g~~ls~a--~i~~~Ly~~~l~~~p~~p~~~~rDrfvlS-~GH~~~~lYa~l~~~G~~~~~ 80 (653)
T TIGR00232 4 ANAIRHLAVDAIQKAKSGHPGAPLGAA--PIAEVLWTKFLKFNPTNPKWINRDRFVLS-NGHGSMLLYSLLHLTGYDLSI 80 (653)
T ss_pred HHHHHHHHHHHHHhcCCCCccchhHHH--HHHHHHHHHhhcCCCCCCCCCCCCeEEEE-CccHHHHHHHHHHHcCCCCCH
Confidence 344676666777777788888777776 666666656664 33 777776 5666 3567897 44
Q ss_pred HHHHHHHhhCCCCCCCCCCCCcccCC-CCCcccccCCCCCCCchhhhhHHhhhhhcC----------CCcEEEEEEcCCc
Q 021087 202 QQFANQVFANKADDGKGRQMPIHYGS-KKLNYITISSPIATQLPQAVGVAYSLKMEK----------KDACAVAYTGDGG 270 (317)
Q Consensus 202 ~~~~~q~~G~~~g~~kGr~mp~H~~s-~~~~i~~~sg~lGtqlp~AvG~A~A~kl~g----------~~~vvv~~~GDGa 270 (317)
++ +.+ |.+. |...|.|+.. ...++...+|+||+++++|+|+|+|.|+.+ .+.+++|++|||+
T Consensus 81 e~-L~~-fr~~-----~s~~~ghp~~~~~~gi~~~tG~lG~gl~~AvG~Ala~k~~~~~~~~~~~~~~~~~v~~~~GDG~ 153 (653)
T TIGR00232 81 ED-LKQ-FRQL-----HSKTPGHPEFGHTAGVEATTGPLGQGIANAVGMAIAQKTLAATFNKPGFEIVDHYTYVFVGDGC 153 (653)
T ss_pred HH-HHh-cccC-----CCCCCCCCCCCCCCCeeeCCcchhccHHHHHHHHHHHHHHhhhccCCccCCcCCEEEEEEcccc
Confidence 44 444 4444 5566788854 567899999999999999999999999863 4789999999999
Q ss_pred cCccchHHHHHHHHHHcCCC-EEEEEecCCccccccccccccCccc
Q 021087 271 TSEQLWKPLSSSSVATMAGP-LVPIYQNNFEAMVLLLRVVHMVSEA 315 (317)
Q Consensus 271 tseGdfhE~ALN~Aa~~~lP-vVFV~eNNgyAIStP~~~~~~~~~~ 315 (317)
++||.+|| |+|+|+.|+|| +|+||+||+|+|++|++++. .+++
T Consensus 154 l~EG~~~E-A~~~A~~~~L~nLi~ivd~N~~~i~~~~~~~~-~~~~ 197 (653)
T TIGR00232 154 LQEGISYE-VASLAGHLKLGKLIVLYDSNRISIDGAVDGSF-TEDV 197 (653)
T ss_pred ccccHHHH-HHHHHHHhCCCcEEEEEeCCCeeecccccccc-CccH
Confidence 99999999 99999999999 89999999999999999886 4554
No 19
>PRK12754 transketolase; Reviewed
Probab=99.81 E-value=1.2e-19 Score=189.44 Aligned_cols=165 Identities=17% Similarity=0.207 Sum_probs=130.7
Q ss_pred HHHHHHHHHHHHHHHhcCcccccccCCchHHHHHHHHhccC--CC-------CeeecCCchHH------HHHHhCC--CH
Q 021087 139 MVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALS--AD-------DFILPQYREPG------VLLWRGY--TL 201 (317)
Q Consensus 139 M~~~R~~D~~~~~lqrqGrigfy~~~~GqEA~~VG~a~AL~--~~-------D~v~~~YR~~g------~~l~rG~--~l 201 (317)
...+|..-..+......|++|.-+++. |.+.+.....|+ |+ |.++.+ .+|+ ++...|+ +.
T Consensus 8 ~~~iR~~~~~~~~~a~sGH~G~~ls~a--~i~~~Ly~~~l~~~p~~p~w~~RDRfvlS-~GH~~~~lYa~l~~~G~~~~~ 84 (663)
T PRK12754 8 ANAIRALSMDAVQKAKSGHPGAPMGMA--DIAEVLWRDFLNHNPQNPSWADRDRFVLS-NGHGSMLIYSLLHLTGYDLPM 84 (663)
T ss_pred HHHHHHHHHHHHHhcCCCCcccchHHH--HHHHHHHHHhcCCCccCCCCCCCCeEEEe-CccHHHHHHHHHHHcCCCCCH
Confidence 344676666777777788888777776 667666666664 33 777776 6666 3556786 55
Q ss_pred HHHHHHHhhCCCCCCCCCCCCcccCC-CCCcccccCCCCCCCchhhhhHHhhhhhcC----------CCcEEEEEEcCCc
Q 021087 202 QQFANQVFANKADDGKGRQMPIHYGS-KKLNYITISSPIATQLPQAVGVAYSLKMEK----------KDACAVAYTGDGG 270 (317)
Q Consensus 202 ~~~~~q~~G~~~g~~kGr~mp~H~~s-~~~~i~~~sg~lGtqlp~AvG~A~A~kl~g----------~~~vvv~~~GDGa 270 (317)
+++ .+ |.+. |...|.|... ...++...+|+||+++++|+|+|+|.|+++ .+.+++|++|||+
T Consensus 85 e~L-~~-fr~~-----gs~~~gHpe~~~~pgve~stG~LGqGl~~AvG~AlA~k~~~~~~~~~~~~~~~~~v~~~~GDGe 157 (663)
T PRK12754 85 EEL-KN-FRQL-----HSKTPGHPEVGYTAGVETTTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGC 157 (663)
T ss_pred HHH-HH-hccC-----CCCCCCCCCCCCCCCccccCCcccchHHHHHHHHHHHHHhhhccCcccccccCCEEEEEECcch
Confidence 554 34 5554 5556778754 457899999999999999999999999886 3789999999999
Q ss_pred cCccchHHHHHHHHHHcCCC-EEEEEecCCccccccccccccCccc
Q 021087 271 TSEQLWKPLSSSSVATMAGP-LVPIYQNNFEAMVLLLRVVHMVSEA 315 (317)
Q Consensus 271 tseGdfhE~ALN~Aa~~~lP-vVFV~eNNgyAIStP~~~~~~~~~~ 315 (317)
++||.+|| |+|+|+.|+|| +||||+||+|+|++|++++. .+++
T Consensus 158 l~EG~~~E-A~~~A~~~kL~nLi~ivD~N~~~idg~~~~~~-~~~~ 201 (663)
T PRK12754 158 MMEGISHE-VCSLAGTLKLGKLIAFYDDNGISIDGHVEGWF-TDDT 201 (663)
T ss_pred hhchHHHH-HHHHHHHhCCCCEEEEEEcCCCccCcchhhcc-CccH
Confidence 99999999 99999999999 89999999999999999886 4554
No 20
>PRK12753 transketolase; Reviewed
Probab=99.79 E-value=3.9e-19 Score=185.72 Aligned_cols=162 Identities=16% Similarity=0.130 Sum_probs=123.5
Q ss_pred HHHHHHHHHHHHHHHhcCcccccccCCchHHHHHHHHhccC--C-------CCeeecCCchHH------HHHHhCC-CHH
Q 021087 139 MVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALS--A-------DDFILPQYREPG------VLLWRGY-TLQ 202 (317)
Q Consensus 139 M~~~R~~D~~~~~lqrqGrigfy~~~~GqEA~~VG~a~AL~--~-------~D~v~~~YR~~g------~~l~rG~-~l~ 202 (317)
...+|..-..+......|++|..+++. |.+.+.....|+ | .|.++.+ .+|+ ++...|+ -..
T Consensus 8 a~~iR~~~~~~~~~a~~GH~g~~ls~~--~i~~~Ly~~~l~~~p~~p~~~~rDrfvls-~GH~~~~lYa~l~~~G~~~~~ 84 (663)
T PRK12753 8 ANAIRALSMDAVQKANSGHPGAPMGMA--DIAEVLWRDFLKHNPTNPTWYDRDRFILS-NGHASMLLYSLLHLTGYDLPI 84 (663)
T ss_pred HHHHHHHHHHHHHhcCCCCchhhHHHH--HHHHHHHHHHhCCCccCCCCCCCCcEEEe-cccHHHHHHHHHHHhCCCCCH
Confidence 344666655666655678887776666 666665555563 3 3776665 4444 4677885 333
Q ss_pred HHHHHHhhCCCCCCCCCCCCcccCC-CCCcccccCCCCCCCchhhhhHHhhhhhcCC----------CcEEEEEEcCCcc
Q 021087 203 QFANQVFANKADDGKGRQMPIHYGS-KKLNYITISSPIATQLPQAVGVAYSLKMEKK----------DACAVAYTGDGGT 271 (317)
Q Consensus 203 ~~~~q~~G~~~g~~kGr~mp~H~~s-~~~~i~~~sg~lGtqlp~AvG~A~A~kl~g~----------~~vvv~~~GDGat 271 (317)
+-|.+ |.+. |...+.|... ...++...+|++|++++.|+|+|+|.|+++. +.+++|++|||++
T Consensus 85 e~L~~-fr~~-----~s~~~ghp~~~~~pgve~~tG~lG~gl~~AvG~A~A~k~~~~~~~~~~~~~~~~~v~~~~GDGel 158 (663)
T PRK12753 85 EELKN-FRQL-----HSKTPGHPEIGYTPGVETTTGPLGQGLANAVGLAIAERTLAAQFNRPGHEIVDHYTYVFMGDGCL 158 (663)
T ss_pred HHHHH-hccC-----CCCCCCCCCCCCCCCcccCCCcccccHHHHHHHHHHHHHhhhhcCCccccccCCEEEEEECcCcc
Confidence 44444 4444 4445678743 4678999999999999999999999998753 6899999999999
Q ss_pred CccchHHHHHHHHHHcCCC-EEEEEecCCccccccccccc
Q 021087 272 SEQLWKPLSSSSVATMAGP-LVPIYQNNFEAMVLLLRVVH 310 (317)
Q Consensus 272 seGdfhE~ALN~Aa~~~lP-vVFV~eNNgyAIStP~~~~~ 310 (317)
+||.+|| |+|+|+.|+|| +|+||+||+|+|++|++++.
T Consensus 159 ~EG~~~E-A~~~A~~~kL~nLi~ivd~N~~~i~~~~~~~~ 197 (663)
T PRK12753 159 MEGISHE-VCSLAGTLGLGKLIGFYDHNGISIDGETEGWF 197 (663)
T ss_pred ccHHHHH-HHHHHHHHCCCCEEEEEECCCCcCCCChhhhc
Confidence 9999999 99999999997 89999999999999998865
No 21
>PLN02790 transketolase
Probab=99.79 E-value=6.7e-19 Score=183.68 Aligned_cols=158 Identities=16% Similarity=0.193 Sum_probs=118.8
Q ss_pred HHHHHHHHHHHhcCcccccccCCchHHHHHHHHhccC---------CCCeeecC--Cch---HHHHHHhCC---CHHHHH
Q 021087 143 QVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALS---------ADDFILPQ--YRE---PGVLLWRGY---TLQQFA 205 (317)
Q Consensus 143 R~~D~~~~~lqrqGrigfy~~~~GqEA~~VG~a~AL~---------~~D~v~~~--YR~---~g~~l~rG~---~l~~~~ 205 (317)
|..-..+......|++|.-+++. |.+.+-....|+ +.|.++.+ |.. .+++...|+ +.++ +
T Consensus 2 R~~~~~~~~~a~~GH~g~~ls~~--ei~~~L~~~~~~~~~~~p~~~~rDrfvls~GH~~~~lYa~l~~~G~~~~~~~~-l 78 (654)
T PLN02790 2 RFLAIDAVNKANSGHPGLPMGCA--PMGHVLYDEVMKYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSVQMED-L 78 (654)
T ss_pred hHHHHHHHHhcCCCcCCchhhHH--HHHHHHHHhhcccCCCCCCCCCCCEEEEeCcchHHHHHHHHHHcCCCCCCHHH-H
Confidence 33333444445668887777666 666655545453 45877765 444 446778897 4444 4
Q ss_pred HHHhhCCCCCCCCCCCCcccCC-CCCcccccCCCCCCCchhhhhHHhhhhh-----cCC-----CcEEEEEEcCCccCcc
Q 021087 206 NQVFANKADDGKGRQMPIHYGS-KKLNYITISSPIATQLPQAVGVAYSLKM-----EKK-----DACAVAYTGDGGTSEQ 274 (317)
Q Consensus 206 ~q~~G~~~g~~kGr~mp~H~~s-~~~~i~~~sg~lGtqlp~AvG~A~A~kl-----~g~-----~~vvv~~~GDGatseG 274 (317)
.. |.+. |...|.|+.. ...++...+|++|++++.|+|+|+|.|+ +++ +.+|+|++|||+++||
T Consensus 79 ~~-~r~~-----~s~~~ghp~~~~~pgi~~~tG~lG~gl~~A~G~A~A~k~~~~~~~~~~~~~~~~~v~~~~GDG~l~eG 152 (654)
T PLN02790 79 KQ-FRQW-----GSRTPGHPENFETPGIEVTTGPLGQGIANAVGLALAEKHLAARFNKPDHKIVDHYTYCILGDGCQMEG 152 (654)
T ss_pred HH-hccC-----CCCCCCCCCCCCCCCccccCCchhchHHHHHHHHHHHHHHHHHhCCCcccccCCEEEEEECcCcccch
Confidence 44 4454 4445667643 4578999999999999999999999995 342 6899999999999999
Q ss_pred chHHHHHHHHHHcCCC-EEEEEecCCccccccccccc
Q 021087 275 LWKPLSSSSVATMAGP-LVPIYQNNFEAMVLLLRVVH 310 (317)
Q Consensus 275 dfhE~ALN~Aa~~~lP-vVFV~eNNgyAIStP~~~~~ 310 (317)
.+|| |+|+|+.|+|| +|+||+||+|+|++|++.+.
T Consensus 153 ~~~E-Al~~A~~~~L~nli~i~d~N~~~i~~~~~~~~ 188 (654)
T PLN02790 153 ISNE-AASLAGHWGLGKLIVLYDDNHISIDGDTEIAF 188 (654)
T ss_pred HHHH-HHHHHHHhCCCCEEEEEecCCccccCCccccc
Confidence 9999 99999999998 99999999999999998654
No 22
>PTZ00089 transketolase; Provisional
Probab=99.78 E-value=1.4e-18 Score=181.51 Aligned_cols=163 Identities=16% Similarity=0.154 Sum_probs=121.3
Q ss_pred HHHHHHHHHHHHHHHhcCcccccccCCchHHHHHHHHhccC---------CCCeeecC--Cch---HHHHHHhCC-CHHH
Q 021087 139 MVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALS---------ADDFILPQ--YRE---PGVLLWRGY-TLQQ 203 (317)
Q Consensus 139 M~~~R~~D~~~~~lqrqGrigfy~~~~GqEA~~VG~a~AL~---------~~D~v~~~--YR~---~g~~l~rG~-~l~~ 203 (317)
...+|.+-..+......|++|.-+++. |.+.+-....|+ +.|.++.+ |.. .+++...|+ ...+
T Consensus 10 a~~iR~~~~~~~~~a~~GH~g~~ls~~--ei~~~L~~~~l~~~~~~~~~~~rDr~vls~GH~~~~lYa~l~l~G~~~~~~ 87 (661)
T PTZ00089 10 ANEIRCLSADLVQKANSGHPGAPMGMA--PIAHILWSEVMKYNPKDPRWINRDRFVLSNGHASALLYSMLHLTGYDLSME 87 (661)
T ss_pred HHHHHHHHHHHHHhcCCCCcchhhHHH--HHHHHHHHHhhcCCCcCCCCCCCCEEEEeCcchHHHHHHHHHHcCCCCCHH
Confidence 334566555555555677877766666 666554444554 35876664 555 445778886 3444
Q ss_pred HHHHHhhCCCCCCCCCCCCcccCC-CCCcccccCCCCCCCchhhhhHHhhhhhcCC----------CcEEEEEEcCCccC
Q 021087 204 FANQVFANKADDGKGRQMPIHYGS-KKLNYITISSPIATQLPQAVGVAYSLKMEKK----------DACAVAYTGDGGTS 272 (317)
Q Consensus 204 ~~~q~~G~~~g~~kGr~mp~H~~s-~~~~i~~~sg~lGtqlp~AvG~A~A~kl~g~----------~~vvv~~~GDGats 272 (317)
-+.+ |.+. |...+.|... ...++...+|++|++++.|+|+|+|.|+++. +..|+|++|||+++
T Consensus 88 ~l~~-fr~~-----~s~~~ghp~~~~~~gv~~~tG~lG~gls~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~v~GDG~l~ 161 (661)
T PTZ00089 88 DLKN-FRQL-----GSRTPGHPERHITPGVEVTTGPLGQGIANAVGLAIAEKHLAAKFNRPGHPIFDNYVYVICGDGCLQ 161 (661)
T ss_pred HHHh-cCCC-----CCCCCCCCCCCCCCCcccCCcchhhhHHHHHHHHHHHHHHhhhccCccccCcCCEEEEEECccchh
Confidence 4555 4444 3334567642 3567888999999999999999999999754 78999999999999
Q ss_pred ccchHHHHHHHHHHcCCC-EEEEEecCCccccccccccc
Q 021087 273 EQLWKPLSSSSVATMAGP-LVPIYQNNFEAMVLLLRVVH 310 (317)
Q Consensus 273 eGdfhE~ALN~Aa~~~lP-vVFV~eNNgyAIStP~~~~~ 310 (317)
||.+|| |+|+|+.|+|| +|+||+||+|+|++|++.+.
T Consensus 162 eG~~~E-Al~~A~~~~L~nLi~i~d~N~~~i~~~~~~~~ 199 (661)
T PTZ00089 162 EGVSQE-ALSLAGHLGLEKLIVLYDDNKITIDGNTDLSF 199 (661)
T ss_pred hHHHHH-HHHHHHHhCCCCEEEEEECCCcccccCccccc
Confidence 999999 99999999997 89999999999999998653
No 23
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=99.77 E-value=1.5e-18 Score=178.50 Aligned_cols=183 Identities=15% Similarity=0.128 Sum_probs=134.7
Q ss_pred CceEEeCCCCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCchHHHHHHHHhccC-CCCeee
Q 021087 107 PCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALS-ADDFIL 185 (317)
Q Consensus 107 p~~rvld~~G~~~~~~~~~~ls~e~l~~lYr~M~~~R~~D~~~~~lqrqGrigfy~~~~GqEA~~VG~a~AL~-~~D~v~ 185 (317)
|+|.+|+.- -+|+++.+++.+++.++ ...+|..-..|... ..|++|.-+++. |.+.+- ...++ +.|.++
T Consensus 2 ~~~~~~~~~---~~~~~~~~~~~~~l~~~---a~~iR~~~~~~~~~-~~gH~g~~ls~~--~i~~~L-~~~~~~~rDr~i 71 (580)
T PRK05444 2 PKYPLLDTI---NSPADLKKLSEEELPQL---ADEIREFLIDVVSK-TGGHLGSNLGVV--ELTVAL-HYVFDTPKDRII 71 (580)
T ss_pred CCCchhhcc---CCHHHHhcCCHHHHHHH---HHHHHHHHHHHHHh-cCCCcCCCccHH--HHHHHH-HHhcCCCCccEE
Confidence 345555433 34566778888776655 44455555555543 578888777777 666544 45665 578877
Q ss_pred cC--CchHHHHHHhCCCHHHHHHHHhhCCCCCCCCCCCCcccCCC-CCcccccCCCCCCCchhhhhHHhhhhhc-CCCcE
Q 021087 186 PQ--YREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSK-KLNYITISSPIATQLPQAVGVAYSLKME-KKDAC 261 (317)
Q Consensus 186 ~~--YR~~g~~l~rG~~l~~~~~q~~G~~~g~~kGr~mp~H~~s~-~~~i~~~sg~lGtqlp~AvG~A~A~kl~-g~~~v 261 (317)
.+ |...+++...|. . +.+.. |.+. |. .+.|.... ..++...+|++|+++|.|+|+|+|.|++ +.++.
T Consensus 72 ls~GH~~y~~~~~~g~-~-~~l~~-~~~~-----~s-~~g~p~~~~~~~~~~~~G~lG~gl~~AvG~A~a~~~~~~~~~~ 142 (580)
T PRK05444 72 WDVGHQAYPHKILTGR-R-DRFDT-LRQK-----GG-LSGFPKRSESEYDTFGAGHSSTSISAALGMAKARDLKGGEDRK 142 (580)
T ss_pred EeccHHHHHHHHHhCc-H-HHhcC-cccC-----CC-CCCCCCCCCCCCeeECCChHHHHHHHHHHHHHHHHhhCCCCCe
Confidence 76 444445666776 2 22333 3333 22 45676543 3688889999999999999999999998 58889
Q ss_pred EEEEEcCCccCccchHHHHHHHHHHcCCCEEEEEecCCcccccccccc
Q 021087 262 AVAYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNNFEAMVLLLRVV 309 (317)
Q Consensus 262 vv~~~GDGatseGdfhE~ALN~Aa~~~lPvVFV~eNNgyAIStP~~~~ 309 (317)
++|++|||+++||.+|| |+++|+.+++|+|+|++||+|+|+++++.+
T Consensus 143 v~~i~GDG~l~eG~~~E-al~~A~~~~~nli~IvdnN~~~i~~~~~~~ 189 (580)
T PRK05444 143 VVAVIGDGALTGGMAFE-ALNNAGDLKSDLIVILNDNEMSISPNVGAL 189 (580)
T ss_pred EEEEEcccccccCHHHH-HHHHHHhhCCCEEEEEECCCCcCCCcchhh
Confidence 99999999999999999 999999999999999999999999998755
No 24
>cd02011 TPP_PK Thiamine pyrophosphate (TPP) family, Phosphoketolase (PK) subfamily, TPP-binding module; PK catalyzes the conversion of D-xylulose 5-phosphate and phosphate to acetyl phosphate, D-glyceraldehyde-3-phosphate and H2O. This enzyme requires divalent magnesium ions and TPP for activity.
Probab=99.75 E-value=1.5e-18 Score=160.61 Aligned_cols=134 Identities=16% Similarity=0.162 Sum_probs=114.0
Q ss_pred CchHHHHHHHHhccCC-CCeeecCCchHHHHHHhCCCHHHHHHHHhhCCCCCCCCCCCCcccCCCCCcccccCCCCCCCc
Q 021087 165 IGEEAINIGSAAALSA-DDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQL 243 (317)
Q Consensus 165 ~GqEA~~VG~a~AL~~-~D~v~~~YR~~g~~l~rG~~l~~~~~q~~G~~~g~~kGr~mp~H~~s~~~~i~~~sg~lGtql 243 (317)
.||++.++.+..+|+. .|++||.||... .| +++++.|+ +. ..| +|+|...+..++...+|+||.++
T Consensus 2 ~GHg~~~l~a~l~l~G~~~~~~p~~~~~~----~g--l~~lf~qf-s~----~gg--~psH~~~~tpGi~~~~G~LG~gL 68 (227)
T cd02011 2 PGHGGPAVLANLYLEGSYSEFYPEISQDE----EG--MRKLFKQF-SF----PGG--IPSHAAPETPGSIHEGGELGYSL 68 (227)
T ss_pred CChHHHHHHHHHHhcCCCccccccccccH----HH--HHHHHHhc-CC----CCC--CCCCCcccCCCeeecccchhhHH
Confidence 5999999999999987 699999999876 22 26678874 32 223 89999888899999999999999
Q ss_pred hhhhhHHhhhhhcCCCcEEEEEEcCCccCccch---HHHHHHHHHHcCCC-EEEEEecCCcccccccccc-ccCcccc
Q 021087 244 PQAVGVAYSLKMEKKDACAVAYTGDGGTSEQLW---KPLSSSSVATMAGP-LVPIYQNNFEAMVLLLRVV-HMVSEAY 316 (317)
Q Consensus 244 p~AvG~A~A~kl~g~~~vvv~~~GDGatseGdf---hE~ALN~Aa~~~lP-vVFV~eNNgyAIStP~~~~-~~~~~~~ 316 (317)
++|+|+| +++.+.+|+|++|||+++||.+ |+ +.+++...++. |+.|++||+|+|++|+... .+.++++
T Consensus 69 s~A~G~a----~d~~d~iv~~vvGDGE~eeG~lA~~W~-a~~~~~~~~~~~vLpIld~Ng~~i~~pt~~~~~~~e~l~ 141 (227)
T cd02011 69 SHAYGAV----FDNPDLIVACVVGDGEAETGPLATSWH-SNKFLNPATDGAVLPILHLNGYKISNPTILARISHEELE 141 (227)
T ss_pred HHHHHhh----hcCCCcEEEEEECcCHHHHHhHHHHHH-hhhhhcccccCCeEEEEEcCCCcccCCccccccCchhHH
Confidence 9999997 4678899999999999999997 99 99999999995 9999999999999999965 4455553
No 25
>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.
Probab=99.75 E-value=8.3e-18 Score=156.29 Aligned_cols=164 Identities=17% Similarity=0.144 Sum_probs=121.4
Q ss_pred HHHHHHHHHHHHhcCcccccccCCchHHHHHHHHhccC---------CCCeeecC--CchHH---HHHHhCCCHHHHHHH
Q 021087 142 LQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALS---------ADDFILPQ--YREPG---VLLWRGYTLQQFANQ 207 (317)
Q Consensus 142 ~R~~D~~~~~lqrqGrigfy~~~~GqEA~~VG~a~AL~---------~~D~v~~~--YR~~g---~~l~rG~~l~~~~~q 207 (317)
+|..-.++......|+++..++.. |.+.+.....|+ ..|.++.+ |...+ ++...|+-..+-+..
T Consensus 3 ~R~~~~~~~~~~~~gh~g~~~s~~--~i~~~L~~~~~~~~~~~~~~~~rd~~v~s~gH~~~~~ya~l~~~g~~~~~~l~~ 80 (255)
T cd02012 3 IRRLSIDMVQKAGSGHPGGSLSAA--DILAVLYFKVLKYDPADPKWPNRDRFVLSKGHASPALYAVLALAGYLPEEDLKT 80 (255)
T ss_pred HHHHHHHHHHhcCCCCcCccHHHH--HHHHHHHHHHhCcCCcCCCCCCCCeEEEcCCcHHHHHHHHHHHcCCCCHHHHHH
Confidence 454444555545567776666555 666655555553 24654443 44333 556778755555554
Q ss_pred HhhCCCCCCCCCCCCcccCCC-CCcccccCCCCCCCchhhhhHHhhhhhcCCCcEEEEEEcCCccCccchHHHHHHHHHH
Q 021087 208 VFANKADDGKGRQMPIHYGSK-KLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLSSSSVAT 286 (317)
Q Consensus 208 ~~G~~~g~~kGr~mp~H~~s~-~~~i~~~sg~lGtqlp~AvG~A~A~kl~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~ 286 (317)
|... |..++.|.... ..++...++++|.++|.|+|+|+|.|+++.++.|+|++|||+..||.+|| ++++|+.
T Consensus 81 -~~~~-----gs~l~gh~~~~~~~g~~~~~GslG~gl~~avG~Ala~~~~~~~~~v~~i~GDG~~~~G~~~e-al~~a~~ 153 (255)
T cd02012 81 -FRQL-----GSRLPGHPEYGLTPGVEVTTGSLGQGLSVAVGMALAEKLLGFDYRVYVLLGDGELQEGSVWE-AASFAGH 153 (255)
T ss_pred -hccc-----CCCCCCCCCCCCCCCeeeCCcchhhHHHHHHHHHHHHHHhCCCCEEEEEECcccccccHHHH-HHHHHHH
Confidence 3443 44577787543 34888899999999999999999999999999999999999999999999 9999999
Q ss_pred cCCC-EEEEEecCCccccccccccccCcc
Q 021087 287 MAGP-LVPIYQNNFEAMVLLLRVVHMVSE 314 (317)
Q Consensus 287 ~~lP-vVFV~eNNgyAIStP~~~~~~~~~ 314 (317)
+++| +|+|++||+|+|+.++......++
T Consensus 154 ~~l~~li~vvdnN~~~~~~~~~~~~~~~~ 182 (255)
T cd02012 154 YKLDNLIAIVDSNRIQIDGPTDDILFTED 182 (255)
T ss_pred cCCCcEEEEEECCCccccCcHhhccCchh
Confidence 9997 999999999999998865554443
No 26
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=99.74 E-value=1.3e-17 Score=174.65 Aligned_cols=163 Identities=12% Similarity=0.088 Sum_probs=120.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCchHHHHHHHHhccC-CCCeeecC--CchHHHHHHh
Q 021087 121 GSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALS-ADDFILPQ--YREPGVLLWR 197 (317)
Q Consensus 121 ~~~~~~ls~e~l~~lYr~M~~~R~~D~~~~~lqrqGrigfy~~~~GqEA~~VG~a~AL~-~~D~v~~~--YR~~g~~l~r 197 (317)
|++...++.+++.++-. .+|..-.++.. ...|++|.-+++. |.+. +....|+ |+|.|+.+ |-..++++..
T Consensus 40 p~dlk~l~~~~l~~la~---~iR~~ii~~~~-~~~GH~g~~Ls~v--el~~-aL~~~~~~p~Dr~i~s~GH~ay~~~~l~ 112 (677)
T PLN02582 40 PIHMKNLSVKELKQLAD---ELRSDVIFNVS-KTGGHLGSSLGVV--ELTV-ALHYVFNAPQDKILWDVGHQSYPHKILT 112 (677)
T ss_pred HHHHhhCCHHHHHHHHH---HHHHHHHHHHH-hcCCCcCccccHH--HHHH-HHHHhhCCCCCeEEEECcchHHHHHHHH
Confidence 44566788888776544 35554444443 2257777555555 5554 4456775 88988874 6666677777
Q ss_pred CCCHHHHHHHHhhCCCCCCCCCCCCcccCC-CCCcccccCCCCCCCchhhhhHHhhhhhcCCCcEEEEEEcCCccCccch
Q 021087 198 GYTLQQFANQVFANKADDGKGRQMPIHYGS-KKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEQLW 276 (317)
Q Consensus 198 G~~l~~~~~q~~G~~~g~~kGr~mp~H~~s-~~~~i~~~sg~lGtqlp~AvG~A~A~kl~g~~~vvv~~~GDGatseGdf 276 (317)
|. .+-+.. +.+. |. .+.|... ...+....+|++|++++.|+|+|+|.|+++++++++|++|||++++|.+
T Consensus 113 gr--~~~l~~-~r~~-----g~-l~g~p~~~e~~~~~~~~G~~g~~ls~a~G~A~a~~~~~~~~~v~~viGDG~~~~G~~ 183 (677)
T PLN02582 113 GR--RDKMHT-MRQT-----NG-LSGFTKRAESEYDCFGTGHSSTTISAGLGMAVGRDLKGKKNNVVAVIGDGAMTAGQA 183 (677)
T ss_pred cc--HHHhcc-cccC-----CC-cCCCCCCCCCCCceeccchhhhhHHHHHHHHHHHHhcCCCCEEEEEecccccchhhH
Confidence 86 222333 2222 22 5666643 2356777899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCEEEEEecCCc
Q 021087 277 KPLSSSSVATMAGPLVPIYQNNFE 300 (317)
Q Consensus 277 hE~ALN~Aa~~~lPvVFV~eNNgy 300 (317)
|| |||+|+.|++|+|+||+||++
T Consensus 184 ~E-aln~a~~~~~~li~iv~~N~~ 206 (677)
T PLN02582 184 YE-AMNNAGYLDSDMIVILNDNKQ 206 (677)
T ss_pred HH-HHHHHHhhCcCEEEEEECCCC
Confidence 99 999999999999999999995
No 27
>cd02017 TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) family, E1 of E. coli PDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the Escherichia coli pyruvate dehydrogenase multienzyme complex (PDC). PDC catalyzes the oxidative decarboxylation of pyruvate and the subsequent acetylation of coenzyme A to acetyl-CoA. The E1 component of PDC catalyzes the first step of the multistep process, using TPP and a divalent cation as cofactors. E. coli PDC is a homodimeric enzyme.
Probab=99.69 E-value=1.7e-16 Score=156.49 Aligned_cols=168 Identities=12% Similarity=0.071 Sum_probs=123.8
Q ss_pred HHHHHHHHHHHHHHHhc------CcccccccCCchHHHHHHHHhccCC------CCeeecCCchHH------HHHHhCCC
Q 021087 139 MVTLQVMDSVLYEAQRQ------GRFSFYLTTIGEEAINIGSAAALSA------DDFILPQYREPG------VLLWRGYT 200 (317)
Q Consensus 139 M~~~R~~D~~~~~lqrq------Grigfy~~~~GqEA~~VG~a~AL~~------~D~v~~~YR~~g------~~l~rG~~ 200 (317)
...+|..-..|...... |++|..+++. |.+.+.....|+. .|.|+. .+|+ ++..+|+-
T Consensus 8 ~~~iR~~i~~mv~~a~s~~~~~gGH~G~slS~a--dI~~aLy~~~l~~~p~~~~RDRvlS--kGHas~~lYA~L~l~G~~ 83 (386)
T cd02017 8 RSLIRWNAMAMVHRANKKDLGIGGHIATFASAA--TLYEVGFNHFFRARGEGGGGDLVYF--QGHASPGIYARAFLEGRL 83 (386)
T ss_pred HHHHHHHHHHHHHHcCCCCcccCCCCCcchhHH--HHHHHHHHHhcCCCCCCCCCCEEEe--CCcccHHHHHHHHHcCCC
Confidence 44555555555554444 6777666666 6666665567875 788553 5555 57778965
Q ss_pred HHHHHHHHhhCCCCCCCCCCCCcccCC--CCCcccccCCCCCCCchhhhhHHhhhhh-------cCCCcEEEEEEcCCcc
Q 021087 201 LQQFANQVFANKADDGKGRQMPIHYGS--KKLNYITISSPIATQLPQAVGVAYSLKM-------EKKDACAVAYTGDGGT 271 (317)
Q Consensus 201 l~~~~~q~~G~~~g~~kGr~mp~H~~s--~~~~i~~~sg~lGtqlp~AvG~A~A~kl-------~g~~~vvv~~~GDGat 271 (317)
..+-+.. |.+..+. ...+.|... ...++...++++|++++.|+|+|+|.|+ ++.+..|+|++|||++
T Consensus 84 ~~edL~~-fr~~gs~---p~l~g~p~~~~~~~gve~sTGSLGqGLs~AvGmAla~r~l~a~~~~~~~~~rvyvllGDGEl 159 (386)
T cd02017 84 TEEQLDN-FRQEVGG---GGLSSYPHPWLMPDFWEFPTVSMGLGPIQAIYQARFNRYLEDRGLKDTSDQKVWAFLGDGEM 159 (386)
T ss_pred CHHHHHh-hccCCCC---CCCCCCCCCCCCCCCeeeCCchHHHHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEEccccc
Confidence 5555665 3443211 134555432 1235888999999999999999999998 5678889999999999
Q ss_pred CccchHHHHHHHHHHcCC-CEEEEEecCCccccccccccc-cCccc
Q 021087 272 SEQLWKPLSSSSVATMAG-PLVPIYQNNFEAMVLLLRVVH-MVSEA 315 (317)
Q Consensus 272 seGdfhE~ALN~Aa~~~l-PvVFV~eNNgyAIStP~~~~~-~~~~~ 315 (317)
+||..|| |+++|+.++| ++|+|+++|+++|+.+++++. ..+++
T Consensus 160 ~EG~vwE-A~~~Ag~~kL~NLivIvD~N~~qidG~t~~v~~~~e~l 204 (386)
T cd02017 160 DEPESLG-AIGLAAREKLDNLIFVVNCNLQRLDGPVRGNGKIIQEL 204 (386)
T ss_pred ccHHHHH-HHHHHHHhCCCCEEEEEECCCCccCCcccccccCchhH
Confidence 9999999 9999999999 699999999999999999863 55554
No 28
>PRK05899 transketolase; Reviewed
Probab=99.69 E-value=2.5e-16 Score=163.26 Aligned_cols=164 Identities=18% Similarity=0.162 Sum_probs=123.9
Q ss_pred HHHHHHHHHHHHHHHHHHhcCcccccccCCchHHHHHHHHhccC---------CCCeeecCCchHH------HHHHhCC-
Q 021087 136 YSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALS---------ADDFILPQYREPG------VLLWRGY- 199 (317)
Q Consensus 136 Yr~M~~~R~~D~~~~~lqrqGrigfy~~~~GqEA~~VG~a~AL~---------~~D~v~~~YR~~g------~~l~rG~- 199 (317)
-+....+|..-..+......|++|.-+++. |...+.....|+ +.|.++.+ .+|+ ++..+|+
T Consensus 9 ~~~a~~iR~~~~~~~~~~~~gH~g~~ls~~--~i~~~L~~~~l~~~~~~~~~~~~Dr~i~s-~GH~~~~~Ya~l~~~G~~ 85 (624)
T PRK05899 9 QLLANAIRVLSIDAVQKANSGHPGMPMGAA--DIAYVLWTRFLRHDPKNPKWPNRDRFVLS-AGHGSMLLYSLLHLAGYD 85 (624)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCccchHHHH--HHHHHHHHHhhcCCCCCCCCCCCCEEEEE-ChhHHHHHHHHHHHcCCC
Confidence 344555777766777666778887766666 666655544564 25887776 5555 4778897
Q ss_pred CHHHHHHHHhhCCCCCCCCCCCCcccCC-CCCcccccCCCCCCCchhhhhHHhhhhhcCC----------CcEEEEEEcC
Q 021087 200 TLQQFANQVFANKADDGKGRQMPIHYGS-KKLNYITISSPIATQLPQAVGVAYSLKMEKK----------DACAVAYTGD 268 (317)
Q Consensus 200 ~l~~~~~q~~G~~~g~~kGr~mp~H~~s-~~~~i~~~sg~lGtqlp~AvG~A~A~kl~g~----------~~vvv~~~GD 268 (317)
-..+-+.. +.+. |...+.|... ...++...+|++|+++|.|+|+|+|.|+++. ++.|+|++||
T Consensus 86 ~~~~~l~~-~~~~-----~~~~~~~p~~~~~~~~~~~~G~lG~gl~~AiG~Ala~~~~~~~~~~~~~~~~~~~v~~v~GD 159 (624)
T PRK05899 86 LSIDDLKN-FRQL-----GSKTPGHPEYGHTPGVETTTGPLGQGLANAVGMALAEKYLAALFNRPGLDIVDHYTYVLCGD 159 (624)
T ss_pred CCHHHHHH-hcCC-----CCCCCCCCCCCCCCCeeeCCcchhhhHHHHHHHHHHHHHhhhhcCCccccCcCCeEEEEECc
Confidence 33444444 3333 2334556543 2357777899999999999999999998877 8899999999
Q ss_pred CccCccchHHHHHHHHHHcCCC-EEEEEecCCcccccccccc
Q 021087 269 GGTSEQLWKPLSSSSVATMAGP-LVPIYQNNFEAMVLLLRVV 309 (317)
Q Consensus 269 GatseGdfhE~ALN~Aa~~~lP-vVFV~eNNgyAIStP~~~~ 309 (317)
|++++|.+|| ||++|+.++|| +|+|++||+|+|++++...
T Consensus 160 G~~~~g~~~E-al~~A~~~~L~~li~v~dnN~~~~~~~~~~~ 200 (624)
T PRK05899 160 GDLMEGISHE-ACSLAGHLKLGNLIVIYDDNRISIDGPTEGW 200 (624)
T ss_pred chhhchHHHH-HHHHHHHhCCCCEEEEEECCCCccccccccc
Confidence 9999999999 99999999998 9999999999999988743
No 29
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=99.68 E-value=3.1e-16 Score=163.53 Aligned_cols=170 Identities=14% Similarity=0.120 Sum_probs=121.7
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCchHHHHHHHHhccC-CCCeeecC--CchHHHHHH
Q 021087 120 KGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALS-ADDFILPQ--YREPGVLLW 196 (317)
Q Consensus 120 ~~~~~~~ls~e~l~~lYr~M~~~R~~D~~~~~lqrqGrigfy~~~~GqEA~~VG~a~AL~-~~D~v~~~--YR~~g~~l~ 196 (317)
.|.+..+|+.++|.++ ...+|.+-..+.... .|++|.-+++. |.+. +....++ |.|.|+.+ |...++++.
T Consensus 14 ~p~dl~~l~~~~l~~~---a~~iR~~ii~~~~~~-~GH~g~~ls~v--el~~-aL~~~~~~prDr~i~s~GH~~Y~~~~l 86 (641)
T PRK12571 14 GPADLRALSDAELEQL---ADELRAEVISAVSET-GGHLGSSLGVV--ELTV-ALHAVFNTPKDKLVWDVGHQCYPHKIL 86 (641)
T ss_pred CHHHHHhCCHHHHHHH---HHHHHHHHHHHHHHh-CCCcCCCchHH--HHHH-HHHHhcCCCCCcEEEECchHHHHHHHH
Confidence 3456678888777655 334555544444433 58777666666 5444 4556665 78987774 666667778
Q ss_pred hCCCHHHHHHHHhhCCCCCCCCCCCCcccCCCC--CcccccCCCCCCCchhhhhHHhhhhhcCCCcEEEEEEcCCccCcc
Q 021087 197 RGYTLQQFANQVFANKADDGKGRQMPIHYGSKK--LNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEQ 274 (317)
Q Consensus 197 rG~~l~~~~~q~~G~~~g~~kGr~mp~H~~s~~--~~i~~~sg~lGtqlp~AvG~A~A~kl~g~~~vvv~~~GDGatseG 274 (317)
.|. .+-+.. |.+. |. ++.|..-.+ ...+ ..++-+++++.|+|+|+|.|+++.++.++|++|||+++||
T Consensus 87 ~g~--~~~l~~-~r~~-----~~-l~g~p~~~e~~~~~~-~~g~~~gslg~a~G~A~a~~~~~~~~~v~~v~GDG~~~eG 156 (641)
T PRK12571 87 TGR--RDRFRT-LRQK-----GG-LSGFTKRSESEYDPF-GAAHSSTSISAALGFAKARALGQPDGDVVAVIGDGSLTAG 156 (641)
T ss_pred hCC--HHHHhh-hhhC-----CC-cCCCCCCCcCCCCCc-ccCCCcChHHHHHHHHHHHHHhCCCCeEEEEEeCchhhcc
Confidence 886 444444 3333 21 334543222 2222 2344577899999999999999999999999999999999
Q ss_pred chHHHHHHHHHHcCCCEEEEEecCCcccccccc
Q 021087 275 LWKPLSSSSVATMAGPLVPIYQNNFEAMVLLLR 307 (317)
Q Consensus 275 dfhE~ALN~Aa~~~lPvVFV~eNNgyAIStP~~ 307 (317)
.+|| |+|+|+.+++|+|+|++||+|+|++|++
T Consensus 157 ~~~E-al~~a~~~~~~li~I~dnN~~~i~~~~~ 188 (641)
T PRK12571 157 MAYE-ALNNAGAADRRLIVILNDNEMSIAPPVG 188 (641)
T ss_pred hHHH-HHHHHHHhCCCEEEEEECCCeeecCCcc
Confidence 9999 9999999999999999999999999996
No 30
>PF00456 Transketolase_N: Transketolase, thiamine diphosphate binding domain; InterPro: IPR005474 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 3M49_B 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 3HYL_A 3RIM_A ....
Probab=99.68 E-value=7.6e-17 Score=156.53 Aligned_cols=162 Identities=20% Similarity=0.169 Sum_probs=121.1
Q ss_pred HHHHHHHHHHHHHHHhcCcccccccCCchHHHHHHHHhccCC---------CCeeecCCchHH------HHHHhCC-CHH
Q 021087 139 MVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSA---------DDFILPQYREPG------VLLWRGY-TLQ 202 (317)
Q Consensus 139 M~~~R~~D~~~~~lqrqGrigfy~~~~GqEA~~VG~a~AL~~---------~D~v~~~YR~~g------~~l~rG~-~l~ 202 (317)
.-.+|..-..|......|++|..++++ |.+.+.....|+. .|.++.+ .+|+ ++..+|+ -..
T Consensus 5 a~~iR~~~~~~~~~a~sGH~G~~ls~a--~i~~~Ly~~~l~~~p~~p~~~~rDrfvlS-kGH~~~~lYa~l~~~G~~~~~ 81 (332)
T PF00456_consen 5 ANTIRKLILDMVQKAGSGHPGSSLSAA--DILYALYFKVLRYDPKNPKWPNRDRFVLS-KGHASPALYAILALRGYDLSE 81 (332)
T ss_dssp HHHHHHHHHHHHHHHT-S-SHHHHHHH--HHHHHHHHHT-BBBTTBTTSTTS-EEEES-SGGGHHHHHHHHHHTTSSS-H
T ss_pred HHHHHHHHHHHHHHhCCCCCcchHHHH--HHHHHHHhhccccCCccccCCCCCcEEEe-ccchhHHHHHHHHHhcCCCCH
Confidence 446777777888888899998877776 7777777777753 4788887 7777 4445787 333
Q ss_pred HHHHHHhhCCCCCCCCCCCCcccC-CCCCcccccCCCCCCCchhhhhHHhhhhhcC----------CCcEEEEEEcCCcc
Q 021087 203 QFANQVFANKADDGKGRQMPIHYG-SKKLNYITISSPIATQLPQAVGVAYSLKMEK----------KDACAVAYTGDGGT 271 (317)
Q Consensus 203 ~~~~q~~G~~~g~~kGr~mp~H~~-s~~~~i~~~sg~lGtqlp~AvG~A~A~kl~g----------~~~vvv~~~GDGat 271 (317)
+.+.+ |.+. |...|.|+. ....++...+|+||++++.|||+|+|.|+.+ .+..|+|++|||++
T Consensus 82 ~~L~~-fr~~-----~s~~~gHP~~~~~~gie~stGsLGqGl~~avG~Ala~k~~~~~~n~~~~~~~~~~vy~l~GDGel 155 (332)
T PF00456_consen 82 EDLKT-FRQL-----GSRLPGHPEYGKTPGIEASTGSLGQGLSIAVGMALAEKMLGARFNKPGFDIIDHRVYVLMGDGEL 155 (332)
T ss_dssp HHHTT-TTST-----TSSSSSSTTTTTSTT-SS--SSTTHHHHHHHHHHHHHHHHHHHHHBTTBSTTT--EEEEEEHHHH
T ss_pred HHHHH-hccC-----CCCCCCCCcccCCceeEeeccchhcchhhHHHHHHHHHHHHhhhcccccccccceEEEEecCccc
Confidence 44443 4443 666788985 6678999999999999999999999998743 36789999999999
Q ss_pred CccchHHHHHHHHHHcCCC-EEEEEecCCccccccccccc
Q 021087 272 SEQLWKPLSSSSVATMAGP-LVPIYQNNFEAMVLLLRVVH 310 (317)
Q Consensus 272 seGdfhE~ALN~Aa~~~lP-vVFV~eNNgyAIStP~~~~~ 310 (317)
+||..|| |+.+|+.++|. +|+|+++|+.+|+.+++.+.
T Consensus 156 ~EG~~~E-A~~~A~~~~L~nLi~i~D~N~~q~dg~~~~~~ 194 (332)
T PF00456_consen 156 QEGSVWE-AASLAGHYKLDNLIVIYDSNGIQIDGPTDIVF 194 (332)
T ss_dssp HSHHHHH-HHHHHHHTT-TTEEEEEEEESEETTEEGGGTH
T ss_pred cchhhHH-HHHHHHHhCCCCEEEEEecCCcccCCCccccc
Confidence 9999999 99999999996 99999999999999998654
No 31
>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.66 E-value=1.1e-16 Score=153.47 Aligned_cols=116 Identities=18% Similarity=0.162 Sum_probs=103.2
Q ss_pred CCchHHHHHHhCCCHH-HHHHHHhhCCC------CCCCCCCCCcccCCCCCcccccCCCCCCCchhhhhHHhhhhhcCCC
Q 021087 187 QYREPGVLLWRGYTLQ-QFANQVFANKA------DDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKD 259 (317)
Q Consensus 187 ~YR~~g~~l~rG~~l~-~~~~q~~G~~~------g~~kGr~mp~H~~s~~~~i~~~sg~lGtqlp~AvG~A~A~kl~g~~ 259 (317)
-||+|+++..+|.++. .++.+.+|+.+ |+..+++++.|+.+. ++..+++++|.++++|+|+++|+|.++++
T Consensus 14 ~~~gh~~C~GCG~~~~~~~l~~~lg~~~v~~~~iGC~~~~~g~~p~~~~--~~~~i~~~~G~~~~~A~G~a~A~~~~~~~ 91 (300)
T PRK11864 14 FYPGNAACPGCGAPLGLRYLLKALGEKTVLVIPASCSTVIQGDTPKSPL--TVPVLHTAFAATAAVASGIEEALKARGEK 91 (300)
T ss_pred ecCCCccCCCCCCHHHHHHHHHHhCCCeEEEeCCCccceecCCCCcccc--cccceeehhhChHHHHHHHHHHHHhhCCC
Confidence 5799999999999998 99999998887 888888888877664 77888999999999999999999998776
Q ss_pred cEEEE-EEcCCccCccchHHHHHHHHHHcCCCEEEEEecCCccccccc
Q 021087 260 ACAVA-YTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNNFEAMVLLL 306 (317)
Q Consensus 260 ~vvv~-~~GDGatseGdfhE~ALN~Aa~~~lPvVFV~eNNgyAIStP~ 306 (317)
++.|+ ++|||++.++.| | +||+|+.+++||+|||+||+|.++|--
T Consensus 92 ~~~Vva~~GDG~~~~~g~-~-~l~~A~~~~~~v~~vv~dN~~~~~TGg 137 (300)
T PRK11864 92 GVIVVGWAGDGGTADIGF-Q-ALSGAAERNHDILYIMYDNEAYMNTGI 137 (300)
T ss_pred CcEEEEEEccCccccccH-H-HHHHHHHhCcCEEEEEECCeeeecCCC
Confidence 66555 999999999997 9 999999999999999999999887753
No 32
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=99.58 E-value=1.5e-14 Score=150.90 Aligned_cols=175 Identities=11% Similarity=0.062 Sum_probs=124.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCchHHHHHHHHhccC-CCCeeecC--CchHHHHHHh
Q 021087 121 GSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALS-ADDFILPQ--YREPGVLLWR 197 (317)
Q Consensus 121 ~~~~~~ls~e~l~~lYr~M~~~R~~D~~~~~lqrqGrigfy~~~~GqEA~~VG~a~AL~-~~D~v~~~--YR~~g~~l~r 197 (317)
|.+..+++.++|.++-.. +|..-..+.... .|++|--.++. |.+ ++....|+ |.|.|+.+ |...++.+..
T Consensus 73 p~~~k~l~~~~L~~la~e---iR~~ii~~~~~~-~GHlgssLs~v--El~-~aL~~vf~~p~DriI~s~GHqaya~~~lt 145 (641)
T PLN02234 73 PMHMKNLSIKELKVLSDE---LRSDVIFNVSKT-GGHLGSNLGVV--ELT-VALHYIFNTPHDKILWDVGHQSYPHKILT 145 (641)
T ss_pred HHHHhhCCHHHHHHHHHH---HHHHHHHHHhhc-CCCccccchHH--HHH-HHHHHhcCCCCCeEEEecchhHHHHHHHH
Confidence 344556777777665443 454433444333 67776555555 554 45556776 88988885 5555566666
Q ss_pred CCCHHHHHHHHhhCCCCCCCCCCCCcccCCC-CCcccccCCCCCCCchhhhhHHhhhhhcCCCcEEEEEEcCCccCccch
Q 021087 198 GYTLQQFANQVFANKADDGKGRQMPIHYGSK-KLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEQLW 276 (317)
Q Consensus 198 G~~l~~~~~q~~G~~~g~~kGr~mp~H~~s~-~~~i~~~sg~lGtqlp~AvG~A~A~kl~g~~~vvv~~~GDGatseGdf 276 (317)
|.- +-|.. +.+. |. ++.|.... ..++...+|++|++|+.|+|+|+|.|+++.++.|+|++|||+++||..
T Consensus 146 gr~--~~l~t-~r~~-----gg-l~G~p~~~es~~d~~~tGslg~glS~a~GmA~a~~l~g~~~~v~~viGDGel~eG~~ 216 (641)
T PLN02234 146 GRR--GKMKT-IRQT-----NG-LSGYTKRRESEHDSFGTGHSSTTLSAGLGMAVGRDLKGMNNSVVSVIGDGAMTAGQA 216 (641)
T ss_pred hhh--hhhcc-cccC-----CC-cCCCCCCCCCCCcEECCCchHHHHHHHHHHHHHHHhCCCCCeEEEEEccchhhhHHH
Confidence 652 12333 2222 22 55676433 357778899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCEEEEEecCCc------cccccccccccC
Q 021087 277 KPLSSSSVATMAGPLVPIYQNNFE------AMVLLLRVVHMV 312 (317)
Q Consensus 277 hE~ALN~Aa~~~lPvVFV~eNNgy------AIStP~~~~~~~ 312 (317)
|| |||+|+..+-++|+|+++|+. +++.|++.+...
T Consensus 217 wE-Al~~a~~~~~nlivIlddN~~~~~~~~q~~g~~~~v~~l 257 (641)
T PLN02234 217 YE-AMNNAGYLHSNMIVILNDNKQVSLPTANLDGPTQPVGAL 257 (641)
T ss_pred HH-HHHHHhhhCCCEEEEEECCCCCcccccccCCCCCCcccH
Confidence 99 999999777789999999999 466666655444
No 33
>TIGR00759 aceE pyruvate dehydrogenase E1 component, homodimeric type. WARNING: This family is classified as subfamily rather than equivalog because it includes a counterexample from Pseudomonas putida, MdeB, that is active as an E1 component of an alpha-ketoglutarate dehydrogenase complex rather than a pyruvate dehydrogase complex. The second pyruvate dehydrogenase complex E1 protein from Alcaligenes eutrophus, PdhE, complements an aceE mutant of E. coli but is not part of a pyruvate dehydrogenase complex operon, is more similar to the Pseudomonas putida MdeB than to E. coli AceE, and may have also have a different primary specificity.
Probab=99.56 E-value=4.1e-14 Score=150.64 Aligned_cols=148 Identities=15% Similarity=0.099 Sum_probs=116.8
Q ss_pred cCcccccccCCchHHHHHHHHhccCC------CCeeecCCchHH------HHHHhCCCHHHHHHHHhhCCCCCCCCCCCC
Q 021087 155 QGRFSFYLTTIGEEAINIGSAAALSA------DDFILPQYREPG------VLLWRGYTLQQFANQVFANKADDGKGRQMP 222 (317)
Q Consensus 155 qGrigfy~~~~GqEA~~VG~a~AL~~------~D~v~~~YR~~g------~~l~rG~~l~~~~~q~~G~~~g~~kGr~mp 222 (317)
.|++|.++++. |...++....|+. +|+|+. .+|+ .+...|+-..+-+.. |.+..+ |...+
T Consensus 101 gGHigsslS~a--dIl~vLy~~~lr~~~~~~~rD~VlS--KGHasp~lYA~L~l~G~ls~e~L~~-FRq~~~---g~gL~ 172 (885)
T TIGR00759 101 GGHISTYASAA--TLYEVGFNHFFRGHSEGGGGDLVFF--QGHAAPGIYARAFLEGRLTEEQLDN-FRQEVQ---GDGLS 172 (885)
T ss_pred CCCcCCcHHHH--HHHHHHHHHhcCCCCCCCCCCEEEE--CCcHHHHHHHHHHHcCCCCHHHHHH-hcCCCC---CCCCC
Confidence 57888887777 7778888777864 687665 5666 366789766666766 444322 34455
Q ss_pred cccC--CCCCcccccCCCCCCCchhhhhHHhhhhh-------cCCCcEEEEEEcCCccCccchHHHHHHHHHHcCC-CEE
Q 021087 223 IHYG--SKKLNYITISSPIATQLPQAVGVAYSLKM-------EKKDACAVAYTGDGGTSEQLWKPLSSSSVATMAG-PLV 292 (317)
Q Consensus 223 ~H~~--s~~~~i~~~sg~lGtqlp~AvG~A~A~kl-------~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~l-PvV 292 (317)
.|.. ....++...++++|.+++.|+|.|++.|+ ++.+.-|+|++|||++.||..|| |+.+|+.++| ++|
T Consensus 173 shPhp~~~p~~ve~sTGSLG~Gls~AvG~Ala~Kyl~~rg~~~~~~~rVyvllGDGEldEG~swE-A~~~Aa~~kLdNLi 251 (885)
T TIGR00759 173 SYPHPWLMPDFWQFPTVSMGLGPINAIYQARFMKYLENRGLKDTGDQKVWAFLGDGEMDEPESKG-AITFAAREKLDNLT 251 (885)
T ss_pred CCCCcCcCCCCEEeCCCCccHHHHHHHHHHHHHHHHHhhccCCCCCceEEEEEcchhhccHHHHH-HHHHHHHhCCCCEE
Confidence 5543 21224788999999999999999999996 66788999999999999999999 9999999999 599
Q ss_pred EEEecCCcccccccccccc
Q 021087 293 PIYQNNFEAMVLLLRVVHM 311 (317)
Q Consensus 293 FV~eNNgyAIStP~~~~~~ 311 (317)
+|+++|+.+++.|++....
T Consensus 252 ~IVD~N~~qlDG~v~~~~~ 270 (885)
T TIGR00759 252 FVINCNLQRLDGPVRGNGK 270 (885)
T ss_pred EEEeCCCCccCCccccccc
Confidence 9999999999999987643
No 34
>KOG0523 consensus Transketolase [Carbohydrate transport and metabolism]
Probab=99.54 E-value=9.6e-14 Score=142.05 Aligned_cols=166 Identities=17% Similarity=0.123 Sum_probs=133.3
Q ss_pred HHHHHHHHHHHHHHHHHhcCcccccccCCchHHHHHHHHhccC--C-------CCeeecC--Cch---HHHHHHhCCCHH
Q 021087 137 SHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALS--A-------DDFILPQ--YRE---PGVLLWRGYTLQ 202 (317)
Q Consensus 137 r~M~~~R~~D~~~~~lqrqGrigfy~~~~GqEA~~VG~a~AL~--~-------~D~v~~~--YR~---~g~~l~rG~~l~ 202 (317)
..|-.+|.....+...-..|+.++.++.. |.+.|-....|+ + .|.++.+ |-+ .+++...|+.-.
T Consensus 12 ~~~n~lri~si~~~~~a~sghp~s~~s~A--~~~~vlf~~~mr~~~~~p~~~n~Drfvls~GHa~~llYa~~~l~G~~~~ 89 (632)
T KOG0523|consen 12 DAVNNLRILSIDATSAAKSGHPGSPLSLA--PIMHVLFFEVMRYNPADPYWFNRDRFVLSNGHACPLLYAHWHLAGYDRE 89 (632)
T ss_pred HHhhhhhhhhHHHHHhhhcCCCCCccccc--hhhhhhhhhheecccCCcCCCCCceEEEeccccchHHHHHHHHhccCcH
Confidence 45788999999998888899888777766 677777766663 3 3666665 334 446677887777
Q ss_pred HHHHHHhhCCCCCCCCCCCCcccCCCCCcccccCCCCCCCchhhhhHHhhhhhcCC-CcEEEEEEcCCccCccchHHHHH
Q 021087 203 QFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKK-DACAVAYTGDGGTSEQLWKPLSS 281 (317)
Q Consensus 203 ~~~~q~~G~~~g~~kGr~mp~H~~s~~~~i~~~sg~lGtqlp~AvG~A~A~kl~g~-~~vvv~~~GDGatseGdfhE~AL 281 (317)
+-|.++. +. |..-+.|.--+..++.-.+|++|++|..|+|+|++.|+.++ ++.|+|++|||+.+||..|| |+
T Consensus 90 edl~~~R-q~-----~s~t~ghp~~~~~~v~v~TG~lgQgis~a~GmA~~~k~~~k~~~rv~~vlGDG~~~eG~~~E-A~ 162 (632)
T KOG0523|consen 90 EDLKNFR-QI-----GSDTPGHPEPELPGVEVATGPLGQGISNAVGMAYAGKHLGKASNRVYCVLGDGCLTEGSVWE-AM 162 (632)
T ss_pred HHHHHHH-hh-----CCCCCCCCcccCCCceeccCCccchHHHHHHHHHHHHhhccccceEEEEEcCchhccchHHH-HH
Confidence 7776642 22 34456677655566677889999999999999999999988 89999999999999999999 99
Q ss_pred HHHHHcCCC-EEEEEecCCcccccccccccc
Q 021087 282 SSVATMAGP-LVPIYQNNFEAMVLLLRVVHM 311 (317)
Q Consensus 282 N~Aa~~~lP-vVFV~eNNgyAIStP~~~~~~ 311 (317)
++|+.++|. +|+|.+||+..|+++++..+.
T Consensus 163 s~Ag~l~ldnLVai~D~n~is~~g~t~~~~~ 193 (632)
T KOG0523|consen 163 SLAGHLKLDNLVAIYDNNKISIDGATSLGFD 193 (632)
T ss_pred hhhhhcccCCEEEEEccccccCCCCCccccc
Confidence 999999995 999999999999999987763
No 35
>TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. Several bacterial species have a paralog to homodimeric form of the pyruvate dehydrogenase E1 component (see model TIGR00759), often encoded next to L-methionine gamma-lyase gene (mdeA). The member from a strain of Pseudomonas putida was shown to act on alpha-ketobutyrate, which is produced by MdeA.This model serves as an exception model to TIGR00759, as other proteins hitting TIGR00759 should be identified as the pyruvate dehydrogenase E1 component.
Probab=99.54 E-value=9.5e-14 Score=148.78 Aligned_cols=149 Identities=15% Similarity=0.068 Sum_probs=113.6
Q ss_pred cCcccccccCCchHHHHHHHHhccCC------CCeeecCCchHH------HHHHhCCCHHHHHHHHhhCCCCCCCCCCCC
Q 021087 155 QGRFSFYLTTIGEEAINIGSAAALSA------DDFILPQYREPG------VLLWRGYTLQQFANQVFANKADDGKGRQMP 222 (317)
Q Consensus 155 qGrigfy~~~~GqEA~~VG~a~AL~~------~D~v~~~YR~~g------~~l~rG~~l~~~~~q~~G~~~g~~kGr~mp 222 (317)
.|++|.++++. |...++....|+. +|+|+.+ +|+ .+...|+-..+-+.++ .+..+ ..|-+.+
T Consensus 101 gGH~gs~lS~a--~i~~vLy~~~lr~~~~~~~rD~Vlsk--GHasp~lYA~l~l~G~l~~e~L~~f-Rq~~~-~~gl~~~ 174 (889)
T TIGR03186 101 GGHIASYASAA--DLFEVGFNHFFRAAGDASGGDLVYFQ--PHSAPGVYARAFLEGFLSDAQLAHY-RQEIA-GPGLCSY 174 (889)
T ss_pred CCCCcCcHHHH--HHHHHHHHHhCCCCCCCCCCCEEEEC--CchHHHHHHHHHHcCCCCHHHHHHh-cCCCC-CCCCCCC
Confidence 47888888777 7788888788874 6876664 344 3556797555666664 44321 2343344
Q ss_pred cccCCCCCcccccCCCCCCCchhhhhHHhhhhhc-------CCCcEEEEEEcCCccCccchHHHHHHHHHHcCC-CEEEE
Q 021087 223 IHYGSKKLNYITISSPIATQLPQAVGVAYSLKME-------KKDACAVAYTGDGGTSEQLWKPLSSSSVATMAG-PLVPI 294 (317)
Q Consensus 223 ~H~~s~~~~i~~~sg~lGtqlp~AvG~A~A~kl~-------g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~l-PvVFV 294 (317)
.|.......+...+|++|.+++.|+|+|++.|+. +.+.-|+|++|||++.||..|| |+.+|+.++| ++|+|
T Consensus 175 phP~~~p~~ve~sTGSLGqGl~~AvG~Ala~kyl~~r~~~~~~~~rVy~llGDGEl~EG~~wE-A~~~Aa~~kLdNLi~I 253 (889)
T TIGR03186 175 PHPWLMPDFWQFPTGSMGIGPINAIYQARFMRYLQNRGLARTEGRKVWGFFGDGEMDEPESIG-ALSLAARERLDNLVFV 253 (889)
T ss_pred CCcccCCCCeEcCCCCchHHHHHHHHHHHHHHHHhhccccCCCCceEEEEEcchhhccHHHHH-HHHHHHHhCCCCEEEE
Confidence 4543322357789999999999999999998842 3367899999999999999999 9999999999 59999
Q ss_pred EecCCccccccccccc
Q 021087 295 YQNNFEAMVLLLRVVH 310 (317)
Q Consensus 295 ~eNNgyAIStP~~~~~ 310 (317)
+++|+.+++.|++...
T Consensus 254 vD~N~~qlDG~t~~~~ 269 (889)
T TIGR03186 254 INCNLQRLDGPVRGNG 269 (889)
T ss_pred EeCCCCccCCcccccc
Confidence 9999999999998743
No 36
>PF13292 DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate synthase; PDB: 2O1X_C 2O1S_B.
Probab=99.52 E-value=1.5e-14 Score=136.49 Aligned_cols=172 Identities=13% Similarity=0.152 Sum_probs=116.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCchHHHHHHHHhccC-CCCeeec--CCchHHHHHHh
Q 021087 121 GSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALS-ADDFILP--QYREPGVLLWR 197 (317)
Q Consensus 121 ~~~~~~ls~e~l~~lYr~M~~~R~~D~~~~~lqrqGrigfy~~~~GqEA~~VG~a~AL~-~~D~v~~--~YR~~g~~l~r 197 (317)
|.+...++.++|.++-+.+ |.+ .+....+.| |...++.|---..|+....++ |.|.|+. .|....|-|..
T Consensus 7 p~dlk~ls~~eL~~La~ei---R~~--ii~~vs~~G--GHl~snLGvVELTiALH~vFd~p~DkivwDvGHQ~Y~HKiLT 79 (270)
T PF13292_consen 7 PEDLKKLSIEELEQLAQEI---REF--IIETVSKTG--GHLASNLGVVELTIALHYVFDSPKDKIVWDVGHQAYVHKILT 79 (270)
T ss_dssp HHHHTTS-GGGHHHHHHHH---HHH--HHHHCTCCC--STHHHHHCCHHHHHHHHHHS-TTTSEEEESSSTT-HHHHHCT
T ss_pred HHHHHcCCHHHHHHHHHHH---HHH--HHHHHhhcC--CCCCCCccHHHHHHHHHHHhCCCCCeEEEecccccchhhhcc
Confidence 4455678888888776654 222 122222222 677888888888999999997 8998776 69999999988
Q ss_pred CCCHHHHHHHHhhCCCCCCCCCCCCcccCCCCCcccccCCCCCCCchhhhhHHhhhhhcCCCcEEEEEEcCCccCccchH
Q 021087 198 GYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEQLWK 277 (317)
Q Consensus 198 G~~l~~~~~q~~G~~~g~~kGr~mp~H~~s~~~~i~~~sg~lGtqlp~AvG~A~A~kl~g~~~vvv~~~GDGatseGdfh 277 (317)
|.- +.|..+ |.. +|-.+-......++..| .+|+-+|.++.|.|+|.|.+++++++-+|+.+||||+..|..+
T Consensus 80 GR~--~~f~Tl--Rq~---gGlSGF~~r~ES~~D~f-~~GHsstsiSaa~Gma~ar~l~~~~~~vVaVIGDGalt~Gma~ 151 (270)
T PF13292_consen 80 GRR--DRFHTL--RQY---GGLSGFPKRSESEYDAF-GAGHSSTSISAALGMAVARDLKGEDRKVVAVIGDGALTGGMAF 151 (270)
T ss_dssp TTC--CCGGGT--TST---TS--SS--TTT-TT--S---SSSS-HHHHHHHHHHHHHHHTS---EEEEEETTGGGSHHHH
T ss_pred CcH--HHhchh--hhc---CCcCCCCCcccCCCCcc-cCCccHhHHHHHHHHHHHHHhcCCCCcEEEEECCcchhHHHHH
Confidence 863 222221 111 12222222233455655 4599999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCEEEEEecCCccccccccc
Q 021087 278 PLSSSSVATMAGPLVPIYQNNFEAMVLLLRV 308 (317)
Q Consensus 278 E~ALN~Aa~~~lPvVFV~eNNgyAIStP~~~ 308 (317)
| |||.|+..+-++|+|.++|+++||-++..
T Consensus 152 E-ALN~~g~~~~~liVILNDN~mSIs~nvGa 181 (270)
T PF13292_consen 152 E-ALNNAGHLKSNLIVILNDNEMSISPNVGA 181 (270)
T ss_dssp H-HHHHHHHHT-SEEEEEEE-SBSSSB--SS
T ss_pred H-HHHHHHhcCCCEEEEEeCCCcccCCCcch
Confidence 9 99999999999999999999999977643
No 37
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=99.50 E-value=1.3e-13 Score=141.51 Aligned_cols=172 Identities=13% Similarity=0.129 Sum_probs=129.9
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc-cccccCCchHHHHHHHHhccC-CCCeeec--CCchHHHHH
Q 021087 120 KGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRF-SFYLTTIGEEAINIGSAAALS-ADDFILP--QYREPGVLL 195 (317)
Q Consensus 120 ~~~~~~~ls~e~l~~lYr~M~~~R~~D~~~~~lqrqGri-gfy~~~~GqEA~~VG~a~AL~-~~D~v~~--~YR~~g~~l 195 (317)
.|++...+|.++|.++-..+ |. +-+..-.+- |..-++.|---..|+....++ |.|.++. .|....|-|
T Consensus 10 ~P~dLk~ls~~eL~~La~Ei---R~-----~li~~vS~~GGHlgsnLGvVELTiALH~VF~sP~D~~IwDVgHQaYpHKi 81 (627)
T COG1154 10 SPADLKKLSIEELPQLADEI---RE-----FLLEVVSATGGHLGSNLGVVELTIALHYVFDSPKDKLIWDVGHQAYPHKI 81 (627)
T ss_pred CHHHHhhCCHHHHHHHHHHH---HH-----HHHHHhccCCCccCCCcChhhhhHHHHHHhCCCCCCeEEecCcccchhHH
Confidence 45566688999888876654 22 222222222 677788888888999999997 8997766 689999999
Q ss_pred HhCCCHHHHHHHHhhCCCCCCCCCCCCcccCCCCCcccccCCCCCCCchhhhhHHhhhhhcCCCcEEEEEEcCCccCccc
Q 021087 196 WRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEQL 275 (317)
Q Consensus 196 ~rG~~l~~~~~q~~G~~~g~~kGr~mp~H~~s~~~~i~~~sg~lGtqlp~AvG~A~A~kl~g~~~vvv~~~GDGatseGd 275 (317)
..|.. +-|..+. +.. |-.+-.-....++..+ .+|+-+|.|+.|+|+|.|..++|+++.||+.+||||++-|.
T Consensus 82 LTGR~--e~f~tlR-q~~----GlsGf~~r~ESe~D~f-~~GHsSTSiSaalG~A~A~~~~g~~~~vvaVIGDGAlt~Gm 153 (627)
T COG1154 82 LTGRR--EQFDTLR-QKD----GLSGFPKREESEHDWF-GVGHSSTSISAALGMAKARDLKGEDRNVVAVIGDGALTGGM 153 (627)
T ss_pred hcCch--hhcchhh-hcC----CCCCCCCcccCCCccc-ccCchHHHHHHHhhHHHHHHhcCCCCcEEEEECCccccchH
Confidence 99874 4444432 111 2111111123456655 55999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHH-HcCCCEEEEEecCCccccccccc
Q 021087 276 WKPLSSSSVA-TMAGPLVPIYQNNFEAMVLLLRV 308 (317)
Q Consensus 276 fhE~ALN~Aa-~~~lPvVFV~eNNgyAIStP~~~ 308 (317)
.+| |||.|+ ..+-|+|+|+++|+++||.++..
T Consensus 154 A~E-ALN~ag~~~~~~~iVILNDNeMSIs~nvGa 186 (627)
T COG1154 154 AFE-ALNNAGADLKSNLIVILNDNEMSISPNVGA 186 (627)
T ss_pred HHH-HHhhhhhccCCCEEEEEeCCCcccCCCccH
Confidence 999 999998 55678999999999999988754
No 38
>PRK13012 2-oxoacid dehydrogenase subunit E1; Provisional
Probab=99.44 E-value=1.2e-12 Score=140.69 Aligned_cols=161 Identities=12% Similarity=0.080 Sum_probs=120.6
Q ss_pred HHHHHHHHHHHHhc------CcccccccCCchHHHHHHHHhccC------CCCeeecCCchHH------HHHHhCCCHHH
Q 021087 142 LQVMDSVLYEAQRQ------GRFSFYLTTIGEEAINIGSAAALS------ADDFILPQYREPG------VLLWRGYTLQQ 203 (317)
Q Consensus 142 ~R~~D~~~~~lqrq------Grigfy~~~~GqEA~~VG~a~AL~------~~D~v~~~YR~~g------~~l~rG~~l~~ 203 (317)
+|..-..|...... |+++.++++. +...|+....|+ .+|+|+. .+|+ .+...|+-.++
T Consensus 96 iR~~a~~mv~~A~~~~~~~GGH~~s~~S~a--~i~~vl~~~~~r~~~~~~~~D~V~s--kGHasp~lYA~~~l~G~l~~e 171 (896)
T PRK13012 96 IRWNALAMVVRANRAYGELGGHIASYASAA--DLFEVGFNHFFRGRDDAGGGDLVYF--QPHSAPGIYARAFLEGRLSEE 171 (896)
T ss_pred HHHHHHHHHHhcCCCCCCCCCCCcccHHHH--HHHHHHHHhhcCCCCCCCCCCEEEE--CcchHHHHHHHHHHcCCCCHH
Confidence 44444445444444 7787777777 777888877786 5787666 4555 35567865555
Q ss_pred HHHHHhhCCCCCCCCCCCCcccCCC-CC-cccccCCCCCCCchhhhhHHhhhh-------hcCCCcEEEEEEcCCccCcc
Q 021087 204 FANQVFANKADDGKGRQMPIHYGSK-KL-NYITISSPIATQLPQAVGVAYSLK-------MEKKDACAVAYTGDGGTSEQ 274 (317)
Q Consensus 204 ~~~q~~G~~~g~~kGr~mp~H~~s~-~~-~i~~~sg~lGtqlp~AvG~A~A~k-------l~g~~~vvv~~~GDGatseG 274 (317)
-|.. |.+... |.+.+.|+.-. .. .+...++++|.+++.|+|.|++.| .+..++-|+|++|||++.||
T Consensus 172 ~L~~-fR~~~~---~~gl~~~P~p~~~p~~~e~~TGSlG~G~~~ai~~A~~~ryl~~~g~~~~~~~~v~~~lGDGEl~Eg 247 (896)
T PRK13012 172 QLDH-FRQEIG---GPGLSSYPHPWLMPDFWQFPTGSMGIGPINAIYQARFMRYLQHRGLKDTSGRKVWGFFGDGEMDEP 247 (896)
T ss_pred HHHH-hcCCCC---CCCCCCCCCcCCCCCCEecCCCCchHHHHHHHHHHHhcccccccccccCCCCeEEEEEchhhhccH
Confidence 5665 444422 34455554321 22 477789999999999999999999 35677889999999999999
Q ss_pred chHHHHHHHHHHcCC-CEEEEEecCCcccccccccccc
Q 021087 275 LWKPLSSSSVATMAG-PLVPIYQNNFEAMVLLLRVVHM 311 (317)
Q Consensus 275 dfhE~ALN~Aa~~~l-PvVFV~eNNgyAIStP~~~~~~ 311 (317)
..|| |+.+|+.++| ++|||+++|+.+++.|++....
T Consensus 248 ~~~e-A~~~A~~~~LdNLi~ivD~N~~~lDG~v~~~~~ 284 (896)
T PRK13012 248 ESIA-ALSLAAREGLDNLVFVINCNLQRLDGPVRGNGR 284 (896)
T ss_pred HHHH-HHHHHHHhCCCcEEEEEECCCccccCccccccc
Confidence 9999 9999999999 5999999999999999987543
No 39
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=99.40 E-value=1.2e-12 Score=137.70 Aligned_cols=169 Identities=7% Similarity=-0.002 Sum_probs=131.0
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-HhcCcccccccCCchHHHHHHHHhccC-CCCeeec--CCchHHHHH
Q 021087 120 KGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEA-QRQGRFSFYLTTIGEEAINIGSAAALS-ADDFILP--QYREPGVLL 195 (317)
Q Consensus 120 ~~~~~~~ls~e~l~~lYr~M~~~R~~D~~~~~l-qrqGrigfy~~~~GqEA~~VG~a~AL~-~~D~v~~--~YR~~g~~l 195 (317)
.|.+..+|+.++|.++-..+ |.+ .+... .+.| |...++.|---..|+...+++ |.|.|+. .|....|-|
T Consensus 84 ~P~dlk~L~~~eL~~La~Ei---R~~--li~~v~s~~G--GHl~snLGvVELTvALH~VFd~p~DkiiwDvgHQ~Y~HKi 156 (701)
T PLN02225 84 TPLQLKNLSVKELKLLADEI---RTE--LHSVLWKKTQ--KSMNPSFAAIELTLALHYVFRAPVDNILWDAVEQTYAHKV 156 (701)
T ss_pred CHHHHhhCCHHHHHHHHHHH---HHH--HHHHhhcccC--CCcCCCccHHHHHHHHHHHhCCCCCceeeccccccchhhH
Confidence 45667789999998887655 322 22222 1233 566778998888999999997 8998777 699999999
Q ss_pred HhCCCHHHHHHHHhhCCCCCCCCCCCCcccCCCCCcccccCCCCCCCchhhhhHHhhhhhcCCCcEEEEEEcCCccCccc
Q 021087 196 WRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEQL 275 (317)
Q Consensus 196 ~rG~~l~~~~~q~~G~~~g~~kGr~mp~H~~s~~~~i~~~sg~lGtqlp~AvG~A~A~kl~g~~~vvv~~~GDGatseGd 275 (317)
..|.- +-|. . |..+ |-.+-......++..|+ .|+-+|.|+.|.|+|.|..++++++-||+.+||||++.|.
T Consensus 157 LTGR~--~~f~--~-Rq~~---GlsGf~~r~ES~~D~f~-~GHssTSiSaalG~a~ardl~g~~~~vvaVIGDGaltgGm 227 (701)
T PLN02225 157 LTRRW--SAIP--S-RQKN---GISGVTSQLESEYDSFG-TGHGCNSISAGLGLAVARDIKGKRDRVVAVIDNATITAGQ 227 (701)
T ss_pred hcCCh--hhcC--c-cccC---CcCCCCCCCCCCCCCCC-CChHHHHHHHHHHHHHHHHhcCCCCcEEEEEcCcchhhhh
Confidence 99974 2222 1 3322 22222222344566664 4999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHcCCCEEEEEecCCcccccc
Q 021087 276 WKPLSSSSVATMAGPLVPIYQNNFEAMVLL 305 (317)
Q Consensus 276 fhE~ALN~Aa~~~lPvVFV~eNNgyAIStP 305 (317)
.+| |||.|+..+-++|+|++||+++|+.+
T Consensus 228 a~E-aLN~~g~~~~~livILNDN~mSi~~n 256 (701)
T PLN02225 228 AYE-AMSNAGYLDSNMIVILNDSRHSLHPN 256 (701)
T ss_pred HHH-HHhhhhccCCCEEEEEeCCCCCCCCC
Confidence 999 99999999999999999999999987
No 40
>PRK09405 aceE pyruvate dehydrogenase subunit E1; Reviewed
Probab=99.39 E-value=4.9e-12 Score=135.78 Aligned_cols=172 Identities=15% Similarity=0.103 Sum_probs=124.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh----cCcccccccCCchHHHHHHHHhccCC------CCeeecCCchHH------
Q 021087 129 KEVAVKMYSHMVTLQVMDSVLYEAQR----QGRFSFYLTTIGEEAINIGSAAALSA------DDFILPQYREPG------ 192 (317)
Q Consensus 129 ~e~l~~lYr~M~~~R~~D~~~~~lqr----qGrigfy~~~~GqEA~~VG~a~AL~~------~D~v~~~YR~~g------ 192 (317)
++++.+..+..++...++.....-.. .|+++.++++. +...|+....|+. +|+|+. .+|+
T Consensus 77 ~~~~e~~i~~~iR~~a~~mv~~An~~~~~~GGH~~s~~S~a--~i~~vl~~~~~r~~~~~~~~D~V~s--kGHasp~lYA 152 (891)
T PRK09405 77 DLELERRIRSYIRWNAAAMVLRANKKDLGLGGHISSFASSA--TLYEVGFNHFFRAPNEPHGGDLVFF--QGHASPGIYA 152 (891)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCcccChHHHH--HHHHHHHHhhCCCCCCCCCCCEEEE--CchHHHHHHH
Confidence 34455555555555555544333221 17777777666 6777888788874 687774 5666
Q ss_pred HHHHhCCCHHHHHHHHhhCCCCCCCCCCCCcccCC-CCC-cccccCCCCCCCchhhhhHHhhhh-------hcCCCcEEE
Q 021087 193 VLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGS-KKL-NYITISSPIATQLPQAVGVAYSLK-------MEKKDACAV 263 (317)
Q Consensus 193 ~~l~rG~~l~~~~~q~~G~~~g~~kGr~mp~H~~s-~~~-~i~~~sg~lGtqlp~AvG~A~A~k-------l~g~~~vvv 263 (317)
.+...|+-..+-|.. |.+.+ .|.+++.|+.- ... .+...++++|++++.|+|.|++.| .++.++.|+
T Consensus 153 ~~~l~G~l~~e~L~~-fR~~~---~g~gl~syPhp~~~p~~~~~~tgS~G~G~~~a~~~A~~~kyl~~~~~~~~~~~rv~ 228 (891)
T PRK09405 153 RAFLEGRLTEEQLDN-FRQEV---DGKGLSSYPHPWLMPDFWQFPTVSMGLGPIMAIYQARFLKYLENRGLKDTSDQKVW 228 (891)
T ss_pred HHHHcCCCCHHHHHH-hcCCC---CCCCCCCCCCcCCCCCCeecCccccchhHHHHHHHHHhCccccccccccCCCceEE
Confidence 355678655556665 44442 24456665432 112 356678999999999999999999 356688999
Q ss_pred EEEcCCccCccchHHHHHHHHHHcCC-CEEEEEecCCcccccccccc
Q 021087 264 AYTGDGGTSEQLWKPLSSSSVATMAG-PLVPIYQNNFEAMVLLLRVV 309 (317)
Q Consensus 264 ~~~GDGatseGdfhE~ALN~Aa~~~l-PvVFV~eNNgyAIStP~~~~ 309 (317)
|++|||++.||..|| |+.+|+.++| ++|||+++|..+++.|++..
T Consensus 229 ~~~GDGEldEg~~~E-A~~~A~~~~LdNLi~ivD~N~q~lDG~v~~~ 274 (891)
T PRK09405 229 AFLGDGEMDEPESLG-AISLAAREKLDNLIFVINCNLQRLDGPVRGN 274 (891)
T ss_pred EEEcchhhccHHHHH-HHHHHHHhCCCCEEEEEECCCcccCCccccc
Confidence 999999999999999 9999999999 59999999999999999874
No 41
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]
Probab=99.19 E-value=1.8e-10 Score=119.41 Aligned_cols=161 Identities=17% Similarity=0.199 Sum_probs=123.6
Q ss_pred HHHHHHHHHHHHHHHhcCcccccccCCchHHHHHHHHhccC--C-------CCeeecCCchHHHH------HHhCC--CH
Q 021087 139 MVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALS--A-------DDFILPQYREPGVL------LWRGY--TL 201 (317)
Q Consensus 139 M~~~R~~D~~~~~lqrqGrigfy~~~~GqEA~~VG~a~AL~--~-------~D~v~~~YR~~g~~------l~rG~--~l 201 (317)
.-.+|.+-..+.+....|+-|.-|... +.+.+.....|+ | .|.++.+ -+||-+ -..|+ ++
T Consensus 10 ~naiR~Ls~davqkAnSGHPG~pmG~A--~ia~~L~~~~l~~nP~nP~W~nRDRFVLS-aGHgSmllYsllhl~Gy~ls~ 86 (663)
T COG0021 10 ANAIRFLSMDAVQKANSGHPGAPMGAA--DIAYVLWTRFLKHNPDNPKWINRDRFVLS-AGHGSMLLYSLLHLTGYDLSL 86 (663)
T ss_pred HHHHHHHHHHHHHhccCCCCCCCccHH--HHHHHHHHHHhcCCCCCCCCCCCccEEec-CCchhHHHHHHHHHccCCCCH
Confidence 456788888888887888877766665 566666666663 3 4677776 567722 23465 56
Q ss_pred HHHHHHHhhCCCCCCCCCCCCcccC-CCCCcccccCCCCCCCchhhhhHHhhhhhcCC----------CcEEEEEEcCCc
Q 021087 202 QQFANQVFANKADDGKGRQMPIHYG-SKKLNYITISSPIATQLPQAVGVAYSLKMEKK----------DACAVAYTGDGG 270 (317)
Q Consensus 202 ~~~~~q~~G~~~g~~kGr~mp~H~~-s~~~~i~~~sg~lGtqlp~AvG~A~A~kl~g~----------~~vvv~~~GDGa 270 (317)
+++.+ |-+. |..-|.|+- ..-.++...+||||++++.|||+|+|.|+... |.-++|++|||.
T Consensus 87 edLk~--FRQ~-----~SkTpGHPE~~~t~GVe~TTGPLGQGianAVGmAlAe~~La~~fn~~g~~ivdh~tYvl~GDGc 159 (663)
T COG0021 87 EDLKN--FRQL-----GSKTPGHPEYGHTPGVEATTGPLGQGLANAVGMALAEKHLAALFNRPGFDIVDHYTYVLVGDGC 159 (663)
T ss_pred HHHHh--hccC-----CCCCCCCCCcCCCCCeEeccCccchhHHHHHHHHHHHHHHHhhhCCCCCccccceEEEEecCch
Confidence 66553 2222 455577873 55678999999999999999999999986432 458999999999
Q ss_pred cCccchHHHHHHHHHHcCCC-EEEEEecCCccccccccccc
Q 021087 271 TSEQLWKPLSSSSVATMAGP-LVPIYQNNFEAMVLLLRVVH 310 (317)
Q Consensus 271 tseGdfhE~ALN~Aa~~~lP-vVFV~eNNgyAIStP~~~~~ 310 (317)
+.||.-|| |..+|++++|. +|++.++|+.+|+.+++...
T Consensus 160 lmEGvs~E-A~slAG~l~L~kLIvlyD~N~IsiDG~~~~~f 199 (663)
T COG0021 160 LMEGVSHE-AASLAGHLKLGKLIVLYDSNDISIDGDTSLSF 199 (663)
T ss_pred HhcccHHH-HHHHHhhcCCCcEEEEEeCCCceeccCccccc
Confidence 99999999 99999999995 99999999999999988765
No 42
>PRK05261 putative phosphoketolase; Provisional
Probab=99.14 E-value=1.2e-10 Score=123.83 Aligned_cols=150 Identities=17% Similarity=0.151 Sum_probs=108.6
Q ss_pred ccccccCCchHHHHHHHHhccCCC--CeeecCCchHH------HHHHhC--------CCHHHH-HHHHhhCCCCCCCCCC
Q 021087 158 FSFYLTTIGEEAINIGSAAALSAD--DFILPQYREPG------VLLWRG--------YTLQQF-ANQVFANKADDGKGRQ 220 (317)
Q Consensus 158 igfy~~~~GqEA~~VG~a~AL~~~--D~v~~~YR~~g------~~l~rG--------~~l~~~-~~q~~G~~~g~~kGr~ 220 (317)
+|.+-++-|+--+-+..-...++. |+++-.=-+|| .+..-| ++.++. |..+|-+-. . +| +
T Consensus 49 ~GHwGt~pgln~vyahln~li~~~~~~~~~V~g~GHg~p~~~a~~~L~Gs~~~~yp~is~d~~gl~~lfrqfs-~-pg-g 125 (785)
T PRK05261 49 LGHWGTTPGLNFIYAHLNRLIRKYDLNMIYITGPGHGGPAMVANAYLEGTYSEIYPEITQDEEGMARLFKQFS-F-PG-G 125 (785)
T ss_pred CCCCCCcHHHHHHHHHHHHHHhhcCCceEEEeCCCccHHHHHHHHHHcCCCcccCCCCCccHHHHHHHHHhcc-C-CC-C
Confidence 378888888877765555555554 55554435565 122346 333332 333332221 1 22 5
Q ss_pred CCcccCCCCCcccccCCCCCCCchhhhhHHhhhhhcCCCcEEEEEEcCCccCccch---HHHHHHHHHHcCCC-EEEEEe
Q 021087 221 MPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEQLW---KPLSSSSVATMAGP-LVPIYQ 296 (317)
Q Consensus 221 mp~H~~s~~~~i~~~sg~lGtqlp~AvG~A~A~kl~g~~~vvv~~~GDGatseGdf---hE~ALN~Aa~~~lP-vVFV~e 296 (317)
++.|......|+...+|+||.++++|+|+|+. +.+.+|+|++|||++++|.+ |+ +.++++..++. |+.|+.
T Consensus 126 ~~sH~~~~tPGi~~~~G~LG~gls~A~G~Al~----~~d~iv~~~vGDGE~EeG~lAa~W~-~~~~~~~~~~g~vLPIld 200 (785)
T PRK05261 126 IPSHAAPETPGSIHEGGELGYSLSHAYGAAFD----NPDLIVACVVGDGEAETGPLATSWH-SNKFLNPATDGAVLPILH 200 (785)
T ss_pred cCCCCCCCCCCeeeCCCchhhHHHHHHHHHHc----CCCCEEEEEECcCchhhhhhHHHhh-hhhhcccccCCCEEEEEE
Confidence 78899878899999999999999999999964 45889999999999999995 89 89999888885 889999
Q ss_pred cCCccccccccccc-cCccc
Q 021087 297 NNFEAMVLLLRVVH-MVSEA 315 (317)
Q Consensus 297 NNgyAIStP~~~~~-~~~~~ 315 (317)
+|+|+|++|+..+. ..+++
T Consensus 201 ~Ng~~Is~pt~~~~~~~e~l 220 (785)
T PRK05261 201 LNGYKIANPTILARISDEEL 220 (785)
T ss_pred ecCCcCCCCccccccCcHhH
Confidence 99999999999663 44544
No 43
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.
Probab=98.97 E-value=4.7e-10 Score=95.86 Aligned_cols=68 Identities=22% Similarity=0.211 Sum_probs=58.6
Q ss_pred ccccCCCCCCCchhhhhHHhhhhhcCCCcEEEEEEcCCccCccchHHHHHHHHHHcCCCEEEEEecCCccccccc
Q 021087 232 YITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNNFEAMVLLL 306 (317)
Q Consensus 232 i~~~sg~lGtqlp~AvG~A~A~kl~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~lPvVFV~eNNgyAIStP~ 306 (317)
+....+++|.++|.|+|++++.+ ++.++|++|||++.+ .++ +|+.|+.+++|+++||.||++..++..
T Consensus 41 ~~~~~g~~G~~~~~a~Gaa~a~~----~~~vv~~~GDG~~~~--~~~-~l~ta~~~~~~~~~iv~nN~~~~~~~~ 108 (168)
T cd00568 41 TSTGFGAMGYGLPAAIGAALAAP----DRPVVCIAGDGGFMM--TGQ-ELATAVRYGLPVIVVVFNNGGYGTIRM 108 (168)
T ss_pred eCCCchhhhhhHHHHHHHHHhCC----CCcEEEEEcCcHHhc--cHH-HHHHHHHcCCCcEEEEEECCccHHHHH
Confidence 44566999999999999999876 678999999999998 457 899999999999999999997666554
No 44
>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC). P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors.
Probab=98.86 E-value=3.1e-09 Score=92.83 Aligned_cols=62 Identities=26% Similarity=0.242 Sum_probs=54.5
Q ss_pred CCCCCCchhhhhHHhhhhhcCCCcEEEEEEcCCccCccchHHHHHHHHHHcCCCEEEEEecCC-cccccc
Q 021087 237 SPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNNF-EAMVLL 305 (317)
Q Consensus 237 g~lGtqlp~AvG~A~A~kl~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~lPvVFV~eNNg-yAIStP 305 (317)
+++|.++|.|+|+++|.+ ++.++|++|||+...+. . +|+.|+.+++|+++||.||+ |++...
T Consensus 49 g~mG~~lp~aiGaala~~----~~~vv~i~GDG~f~~~~--~-el~ta~~~~~p~~~iV~nN~~~~~~~~ 111 (178)
T cd02002 49 GGLGWGLPAAVGAALANP----DRKVVAIIGDGSFMYTI--Q-ALWTAARYGLPVTVVILNNRGYGALRS 111 (178)
T ss_pred ccccchHHHHHHHHhcCC----CCeEEEEEcCchhhccH--H-HHHHHHHhCCCeEEEEEcCccHHHHHH
Confidence 899999999999999864 67899999999999885 4 59999999999998888886 998754
No 45
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.
Probab=98.75 E-value=2.3e-08 Score=87.29 Aligned_cols=66 Identities=20% Similarity=0.084 Sum_probs=52.1
Q ss_pred cCCCCCCCchhhhhHHhhhhhcCCCcEEEEEEcCCccCccchHHHHHHHHHHcCCCEEEEEecC-Ccccccccc
Q 021087 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNN-FEAMVLLLR 307 (317)
Q Consensus 235 ~sg~lGtqlp~AvG~A~A~kl~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~lPvVFV~eNN-gyAIStP~~ 307 (317)
..+.+|.++|.|+|+++|.+ ++.|+|++|||+.... .+ .|+.|+.+++|+++||-|| +|++.....
T Consensus 46 ~~g~mG~~lp~AiGa~la~~----~~~vv~i~GDG~f~~~--~~-el~ta~~~~lpv~ivv~NN~~~~~~~~~~ 112 (172)
T cd02004 46 TFGTLGVGLGYAIAAALARP----DKRVVLVEGDGAFGFS--GM-ELETAVRYNLPIVVVVGNNGGWYQGLDGQ 112 (172)
T ss_pred CCCcccchHHHHHHHHHhCC----CCeEEEEEcchhhcCC--HH-HHHHHHHcCCCEEEEEEECcccccchhhh
Confidence 34778888888888887754 7789999999999875 35 7999999999977776555 698876543
No 46
>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions. POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors.
Probab=98.70 E-value=1.2e-08 Score=89.98 Aligned_cols=61 Identities=20% Similarity=0.299 Sum_probs=51.4
Q ss_pred CCCCCCCchhhhhHHhhhhhcCCCcEEEEEEcCCccCccchHHHHHHHHHHcCCCEEEEEecCC-cccc
Q 021087 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNNF-EAMV 303 (317)
Q Consensus 236 sg~lGtqlp~AvG~A~A~kl~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~lPvVFV~eNNg-yAIS 303 (317)
.+.+|.++|.|+|+++|. .++.+||++|||+...+ +.| |..|+.+++|+++||.||+ |++.
T Consensus 50 ~g~mG~~~~~aiGa~~a~----~~~~vv~i~GDG~f~~~-~~e--l~t~~~~~lp~~~iv~NN~~~~~~ 111 (178)
T cd02014 50 LATMGNGLPGAIAAKLAY----PDRQVIALSGDGGFAML-MGD--LITAVKYNLPVIVVVFNNSDLGFI 111 (178)
T ss_pred CchhhhHHHHHHHHHHhC----CCCcEEEEEcchHHHhh-HHH--HHHHHHhCCCcEEEEEECCchhHH
Confidence 377888888888888774 46789999999999988 677 7889999999988888886 8874
No 47
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.
Probab=98.51 E-value=1.1e-07 Score=85.45 Aligned_cols=61 Identities=18% Similarity=0.161 Sum_probs=49.3
Q ss_pred CCCCCCCchhhhhHHhhhhhcCCCcEEEEEEcCCccCccchHHHHHHHHHHcCCCEEEEE-ecCCcccc
Q 021087 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLSSSSVATMAGPLVPIY-QNNFEAMV 303 (317)
Q Consensus 236 sg~lGtqlp~AvG~A~A~kl~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~lPvVFV~-eNNgyAIS 303 (317)
.+.+|.++|.|+|+++|. .++.|||+.|||+.... ..| |..|+.+++|+|+|| +|++|++.
T Consensus 52 ~g~mG~~lpaaiGa~la~----p~r~vv~i~GDG~f~m~-~~e--L~Ta~~~~lpvi~vV~NN~~yg~~ 113 (196)
T cd02013 52 FGNCGYALPAIIGAKAAA----PDRPVVAIAGDGAWGMS-MME--IMTAVRHKLPVTAVVFRNRQWGAE 113 (196)
T ss_pred CcccccHHHHHHHHHHhC----CCCcEEEEEcchHHhcc-HHH--HHHHHHhCCCeEEEEEECchhHHH
Confidence 377899899898888774 36789999999999985 566 888999999977776 66668764
No 48
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=98.50 E-value=1.3e-07 Score=96.32 Aligned_cols=62 Identities=26% Similarity=0.288 Sum_probs=54.0
Q ss_pred cCCCCCCCchhhhhHHhhhhhcCCCcEEEEEEcCCccCccchHHHHHHHHHHcCCCEEEEEecCC-cccc
Q 021087 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNNF-EAMV 303 (317)
Q Consensus 235 ~sg~lGtqlp~AvG~A~A~kl~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~lPvVFV~eNNg-yAIS 303 (317)
.++.+|.++|.|+|+++|.+ ++.|+|++|||+...+. + +|+.|+.+++|+++||.||+ |++.
T Consensus 405 ~~g~mG~~lp~aiGa~la~p----~~~vv~i~GDG~f~~~~--~-eL~ta~~~~lp~~~vv~NN~~~~~~ 467 (530)
T PRK07092 405 ASGGLGYGLPAAVGVALAQP----GRRVIGLIGDGSAMYSI--Q-ALWSAAQLKLPVTFVILNNGRYGAL 467 (530)
T ss_pred CCCcccchHHHHHHHHHhCC----CCeEEEEEeCchHhhhH--H-HHHHHHHhCCCcEEEEEeChHHHHH
Confidence 45889999999999999853 67899999999999984 5 79999999999988888888 9874
No 49
>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC). PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors.
Probab=98.50 E-value=1.5e-07 Score=83.83 Aligned_cols=63 Identities=17% Similarity=0.210 Sum_probs=50.5
Q ss_pred cCCCCCCCchhhhhHHhhhhhcCCCcEEEEEEcCCccCccchHHHHHHHHHHcCCC-EEEEEecCCccccc
Q 021087 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLSSSSVATMAGP-LVPIYQNNFEAMVL 304 (317)
Q Consensus 235 ~sg~lGtqlp~AvG~A~A~kl~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~lP-vVFV~eNNgyAISt 304 (317)
..+.+|..+|.|+|+++|.+ ++.|+|++|||+... .++| |-.|+.+++| +|+|++||+|++..
T Consensus 48 ~~g~mG~~l~~aiGaala~~----~~~vv~i~GDG~f~~-~~~e--l~ta~~~~~p~~ivV~nN~~~~~~~ 111 (183)
T cd02005 48 LWGSIGYSVPAALGAALAAP----DRRVILLVGDGSFQM-TVQE--LSTMIRYGLNPIIFLINNDGYTIER 111 (183)
T ss_pred chhhHhhhHHHHHHHHHhCC----CCeEEEEECCchhhc-cHHH--HHHHHHhCCCCEEEEEECCCcEEEE
Confidence 44789999999999988864 578999999999944 6788 6678899998 66667777798743
No 50
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.
Probab=98.47 E-value=2e-07 Score=82.54 Aligned_cols=60 Identities=22% Similarity=0.272 Sum_probs=48.2
Q ss_pred CCCCCCCchhhhhHHhhhhhcCCCcEEEEEEcCCccCccchHHHHHHHHHHcCCCEEEEEecCC-ccc
Q 021087 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNNF-EAM 302 (317)
Q Consensus 236 sg~lGtqlp~AvG~A~A~kl~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~lPvVFV~eNNg-yAI 302 (317)
.+.+|.++|.|+|+++|.+ ++.|||++|||+..-. +. .|..|+.+++|+++||-||+ |++
T Consensus 49 ~g~mG~~lp~aiGa~la~~----~~~vv~i~GDG~f~~~-~~--eL~ta~~~~lpi~ivV~nN~~~~~ 109 (186)
T cd02015 49 LGTMGFGLPAAIGAKVARP----DKTVICIDGDGSFQMN-IQ--ELATAAQYNLPVKIVILNNGSLGM 109 (186)
T ss_pred ccchhchHHHHHHHHHhCC----CCeEEEEEcccHHhcc-HH--HHHHHHHhCCCeEEEEEECCccHH
Confidence 3678898988888888753 6789999999999854 44 49999999999877777777 554
No 51
>cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE). M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors.
Probab=98.46 E-value=1e-07 Score=84.76 Aligned_cols=62 Identities=13% Similarity=0.140 Sum_probs=48.1
Q ss_pred CCCCCCCchhhhhHHhhhhhcCCCcEEEEEEcCCccCccchHHHHHHHHHHcCC-C-EEEEEecCCcccccc
Q 021087 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLSSSSVATMAG-P-LVPIYQNNFEAMVLL 305 (317)
Q Consensus 236 sg~lGtqlp~AvG~A~A~kl~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~l-P-vVFV~eNNgyAIStP 305 (317)
.+++|.++|.|+|+|+|.+ +.|||++|||+...+. . .+..|+.+++ | +++|++||+|++...
T Consensus 41 ~g~mG~~lp~AiGaala~~-----~~vv~i~GDG~f~m~~--~-el~ta~~~~~~~l~vvV~NN~~~~~~~~ 104 (179)
T cd03372 41 LGSMGLASSIGLGLALAQP-----RKVIVIDGDGSLLMNL--G-ALATIAAEKPKNLIIVVLDNGAYGSTGN 104 (179)
T ss_pred ccchhhHHHHHHHHHhcCC-----CcEEEEECCcHHHhCH--H-HHHHHHHcCCCCEEEEEEcCccccccCC
Confidence 6889999999999999965 6799999999995331 2 4666777885 5 566678888998643
No 52
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....
Probab=98.38 E-value=2.4e-07 Score=79.26 Aligned_cols=62 Identities=27% Similarity=0.304 Sum_probs=49.9
Q ss_pred cCCCCCCCchhhhhHHhhhhhcCCCcEEEEEEcCCccCccchHHHHHHHHHHcCCCEEEEEecCC-cccc
Q 021087 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNNF-EAMV 303 (317)
Q Consensus 235 ~sg~lGtqlp~AvG~A~A~kl~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~lPvVFV~eNNg-yAIS 303 (317)
..+.+|..+|.|+|+++| ..++.|||++|||+.... ..| |..|+.+++|+++||-||+ |++.
T Consensus 26 ~~g~mG~~~~~aiGa~~a----~p~~~vv~i~GDG~f~~~-~~e--l~ta~~~~~~v~~vv~nN~~~~~~ 88 (153)
T PF02775_consen 26 GFGSMGYALPAAIGAALA----RPDRPVVAITGDGSFLMS-LQE--LATAVRYGLPVVIVVLNNGGYGMT 88 (153)
T ss_dssp TTT-TTTHHHHHHHHHHH----STTSEEEEEEEHHHHHHH-GGG--HHHHHHTTSSEEEEEEESSBSHHH
T ss_pred CccccCCHHHhhhHHHhh----cCcceeEEecCCcceeec-cch--hHHHhhccceEEEEEEeCCcceEe
Confidence 567888888888888886 447889999999999888 666 9999999999777766666 7654
No 53
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.
Probab=98.38 E-value=7.2e-07 Score=78.73 Aligned_cols=62 Identities=18% Similarity=0.129 Sum_probs=48.1
Q ss_pred cCCCCCCCchhhhhHHhhhhhcCCCcEEEEEEcCCccCccchHHHHHHHHHHcCCCEEEEEecC-Cccc
Q 021087 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNN-FEAM 302 (317)
Q Consensus 235 ~sg~lGtqlp~AvG~A~A~kl~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~lPvVFV~eNN-gyAI 302 (317)
..+.+|..+|.|+|+++|.+ ++.|+|+.|||+....- .+ .|..|+.+++|+++||-|| +|++
T Consensus 49 ~~g~mG~gl~~AiGa~la~p----~~~Vv~i~GDG~f~~~g-~~-eL~ta~~~~l~i~vvV~nN~~~g~ 111 (178)
T cd02008 49 TCTCMGASIGVAIGMAKASE----DKKVVAVIGDSTFFHSG-IL-GLINAVYNKANITVVILDNRTTAM 111 (178)
T ss_pred ccccCccHHHHHhhHHhhCC----CCCEEEEecChHHhhcc-HH-HHHHHHHcCCCEEEEEECCcceec
Confidence 46889999999999998875 56789999999996432 35 6888999999965555555 4765
No 54
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=98.31 E-value=7.2e-07 Score=92.08 Aligned_cols=59 Identities=17% Similarity=0.232 Sum_probs=50.3
Q ss_pred CCCCCCchhhhhHHhhhhhcCCCcEEEEEEcCCccCccchHHHHHHHHHHcCCCEEEEEecCC-ccc
Q 021087 237 SPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNNF-EAM 302 (317)
Q Consensus 237 g~lGtqlp~AvG~A~A~kl~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~lPvVFV~eNNg-yAI 302 (317)
+.+|.++|.|+|+++|. .++.|||++|||+.. -.+.| |..|..+++|+||||-||+ |.+
T Consensus 422 gsmG~~lp~aiGa~lA~----p~~~vv~i~GDG~f~-~~~~e--l~Ta~~~~lpi~~vV~NN~~~~~ 481 (570)
T PRK06725 422 GTMGFGFPAAIGAQLAK----EEELVICIAGDASFQ-MNIQE--LQTIAENNIPVKVFIINNKFLGM 481 (570)
T ss_pred ccccchhhHHHhhHhhc----CCCeEEEEEecchhh-ccHHH--HHHHHHhCCCeEEEEEECCccHH
Confidence 88999999999998874 467899999999996 44667 9999999999999888888 554
No 55
>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit. Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=98.30 E-value=7.5e-07 Score=79.58 Aligned_cols=60 Identities=17% Similarity=0.205 Sum_probs=48.6
Q ss_pred CCCCCCCchhhhhHHhhhhhcCCCcEEEEEEcCCccCccchHHHHHHHHHHcC-CCEEEEEecCC-cccc
Q 021087 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLSSSSVATMA-GPLVPIYQNNF-EAMV 303 (317)
Q Consensus 236 sg~lGtqlp~AvG~A~A~kl~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~-lPvVFV~eNNg-yAIS 303 (317)
.+.+|..+|.|+|+++|. ++.|||+.|||+...+. . .|..|+.++ +|+++||-||+ |++-
T Consensus 41 ~gsmG~~lpaAiGa~la~-----~~~Vv~i~GDG~f~m~~--~-el~ta~~~~~~pv~~vV~NN~~yg~~ 102 (181)
T TIGR03846 41 LGSMGLASSIGLGLALAT-----DRTVIVIDGDGSLLMNL--G-VLPTIAAESPKNLILVILDNGAYGST 102 (181)
T ss_pred ccccccHHHHHHHHHHcC-----CCcEEEEEcchHHHhhh--h-HHHHHHHhCCCCeEEEEEeCCccccc
Confidence 578999999999998885 56699999999998664 3 588899999 49888776666 7764
No 56
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=98.26 E-value=1.7e-06 Score=89.17 Aligned_cols=63 Identities=19% Similarity=0.148 Sum_probs=51.8
Q ss_pred CCCCCCCchhhhhHHhhhhhcCCCcEEEEEEcCCccCccchHHHHHHHHHHcCCCEEEEEecC-Ccccc
Q 021087 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNN-FEAMV 303 (317)
Q Consensus 236 sg~lGtqlp~AvG~A~A~kl~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~lPvVFV~eNN-gyAIS 303 (317)
.+.+|..+|.|+|+++| ..++.|||++|||+...+...+ +++.|+.+++|+++||-|| +|++.
T Consensus 429 ~gsmG~~lp~aiGa~la----~p~~~vv~i~GDG~f~~~~~e~-~l~ta~~~~l~~~ivv~NN~~yg~~ 492 (569)
T PRK08327 429 AGGLGWALGAALGAKLA----TPDRLVIATVGDGSFIFGVPEA-AHWVAERYGLPVLVVVFNNGGWLAV 492 (569)
T ss_pred CCCCCcchHHHHHHhhc----CCCCeEEEEecCcceeecCcHH-HHHHHHHhCCCEEEEEEeCcccccc
Confidence 36788877777777766 3478899999999999987666 7999999999988888888 58763
No 57
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl). E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.
Probab=98.23 E-value=1.5e-06 Score=78.16 Aligned_cols=61 Identities=25% Similarity=0.294 Sum_probs=49.3
Q ss_pred CCCCCCCchhhhhHHhhhhhcCCCcEEEEEEcCCccCccchHHHHHHHHHHcCCCEEEEEecCC-cccc
Q 021087 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNNF-EAMV 303 (317)
Q Consensus 236 sg~lGtqlp~AvG~A~A~kl~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~lPvVFV~eNNg-yAIS 303 (317)
.+++|..+|.|+|+++|.. ++.|||+.|||+..-.- . .|..|+.+++|+++||-||+ |.+.
T Consensus 56 ~GsmG~~lpaaiGa~la~p----~~~vv~i~GDG~f~m~~-~--eL~Ta~~~~lpviivV~NN~~yg~~ 117 (202)
T cd02006 56 AGPLGWTVPAALGVAAADP----DRQVVALSGDYDFQFMI-E--ELAVGAQHRIPYIHVLVNNAYLGLI 117 (202)
T ss_pred ccchhhhhHHHHhHHhhCC----CCeEEEEEeChHhhccH-H--HHHHHHHhCCCeEEEEEeCchHHHH
Confidence 4778888888888888753 67899999999998774 4 48899999999777777776 8753
No 58
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=98.22 E-value=1.5e-06 Score=89.19 Aligned_cols=61 Identities=21% Similarity=0.263 Sum_probs=52.1
Q ss_pred CCCCCCchhhhhHHhhhhhcCCCcEEEEEEcCCccCccchHHHHHHHHHHcCCCEEEEEecCC-ccccc
Q 021087 237 SPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNNF-EAMVL 304 (317)
Q Consensus 237 g~lGtqlp~AvG~A~A~kl~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~lPvVFV~eNNg-yAISt 304 (317)
+.+|.++|.|+|+++|.+ ++.|+|++|||+.... +.| |..|+.+++|+|+||-||+ |++..
T Consensus 419 g~mG~~lpaaiGa~la~~----~~~vv~i~GDGsf~~~-~~e--L~ta~~~~lpvi~vV~NN~~~g~~~ 480 (564)
T PRK08155 419 GTMGFGLPAAIGAALANP----ERKVLCFSGDGSLMMN-IQE--MATAAENQLDVKIILMNNEALGLVH 480 (564)
T ss_pred ccccchhHHHHHHHHhCC----CCcEEEEEccchhhcc-HHH--HHHHHHhCCCeEEEEEeCCcccccH
Confidence 789999999999998864 6679999999999985 677 8899999999888888887 88743
No 59
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=98.20 E-value=1.6e-06 Score=89.61 Aligned_cols=61 Identities=26% Similarity=0.323 Sum_probs=51.0
Q ss_pred CCCCCCCchhhhhHHhhhhhcCCCcEEEEEEcCCccCccchHHHHHHHHHHcCCCEEEEEecCC-cccc
Q 021087 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNNF-EAMV 303 (317)
Q Consensus 236 sg~lGtqlp~AvG~A~A~kl~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~lPvVFV~eNNg-yAIS 303 (317)
.+.+|.++|.|+|+++|.. ++.|||++|||+...+ +.| |..|+.+++|+++||-||+ |++.
T Consensus 407 ~gsmG~~~paAiGa~la~p----~~~vv~i~GDGsf~~~-~~e--l~Ta~~~~lpv~~vV~NN~~~g~i 468 (578)
T PRK06546 407 HGSMANALPHAIGAQLADP----GRQVISMSGDGGLSML-LGE--LLTVKLYDLPVKVVVFNNSTLGMV 468 (578)
T ss_pred cccccchhHHHHHHHHhCC----CCcEEEEEcCchHhhh-HHH--HHHHHHhCCCeEEEEEECCccccH
Confidence 4789999999999998864 6789999999999874 455 9999999999888888887 6653
No 60
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.
Probab=98.20 E-value=1.3e-06 Score=77.44 Aligned_cols=62 Identities=24% Similarity=0.322 Sum_probs=48.0
Q ss_pred cCCCCCCCchhhhhHHhhhhhcCCCcEEEEEEcCCccCccchHHHHHHHHHHcCCCEEEEEecC-Ccccc
Q 021087 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNN-FEAMV 303 (317)
Q Consensus 235 ~sg~lGtqlp~AvG~A~A~kl~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~lPvVFV~eNN-gyAIS 303 (317)
..+.+|..+|.|+|+++|. .++.|||+.|||+..-.- . .|-.|+.+++|+|+||-|| +|.+.
T Consensus 46 ~~g~mG~~lp~aiGa~la~----~~~~vv~i~GDG~f~m~~-~--eL~ta~~~~l~vi~vV~NN~~~g~~ 108 (177)
T cd02010 46 GLATMGVALPGAIGAKLVY----PDRKVVAVSGDGGFMMNS-Q--ELETAVRLKIPLVVLIWNDNGYGLI 108 (177)
T ss_pred CChhhhhHHHHHHHHHHhC----CCCcEEEEEcchHHHhHH-H--HHHHHHHHCCCeEEEEEECCcchHH
Confidence 4478899999999998874 367799999999997543 3 4888999999976665555 58764
No 61
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase). Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors.
Probab=98.17 E-value=2.3e-06 Score=74.65 Aligned_cols=60 Identities=13% Similarity=0.114 Sum_probs=46.1
Q ss_pred CCCCCCCchhhhhHHhhhhhcCCCcEEEEEEcCCccCccchHHHHHHHHHHc-CCCEEEEE-ecCCcccc
Q 021087 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLSSSSVATM-AGPLVPIY-QNNFEAMV 303 (317)
Q Consensus 236 sg~lGtqlp~AvG~A~A~kl~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~-~lPvVFV~-eNNgyAIS 303 (317)
-+++|.++|.|+|+++|.+ +.|||+.|||+..-.. . .|..++.+ ++|+++|| +|++|++.
T Consensus 41 ~gsmG~~lp~AiGa~~a~~-----~~Vv~i~GDG~f~m~~-~--el~t~~~~~~~~i~~vV~nN~~~g~~ 102 (157)
T cd02001 41 LGSMGLAGSIGLGLALGLS-----RKVIVVDGDGSLLMNP-G--VLLTAGEFTPLNLILVVLDNRAYGST 102 (157)
T ss_pred ecchhhHHHHHHHHHhcCC-----CcEEEEECchHHHhcc-c--HHHHHHHhcCCCEEEEEEeCcccccc
Confidence 6889999999999999863 6689999999994332 2 47777888 59987777 55558753
No 62
>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins. PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors.
Probab=98.17 E-value=2.2e-06 Score=76.90 Aligned_cols=61 Identities=23% Similarity=0.288 Sum_probs=46.9
Q ss_pred CCCCCCCchhhhhHHhhhhhcCCCcEEEEEEcCCccCccchHHHHHHHHHHcCC-CEEEEEecCC-cccc
Q 021087 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLSSSSVATMAG-PLVPIYQNNF-EAMV 303 (317)
Q Consensus 236 sg~lGtqlp~AvG~A~A~kl~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~l-PvVFV~eNNg-yAIS 303 (317)
++.+|..+|.|+|+++|.+ ++-|+|++|||+..... + .|..|+.+++ |+++||-||+ |++.
T Consensus 47 ~g~mG~~lpaAiGaala~p----~~~Vv~i~GDG~f~m~~--~-eL~ta~~~~l~~i~ivV~NN~~yg~~ 109 (188)
T cd03371 47 VGSMGHASQIALGIALARP----DRKVVCIDGDGAALMHM--G-GLATIGGLAPANLIHIVLNNGAHDSV 109 (188)
T ss_pred cCccccHHHHHHHHHHhCC----CCcEEEEeCCcHHHhhc--c-HHHHHHHcCCCCcEEEEEeCchhhcc
Confidence 3889999999999998864 56789999999986432 3 5888999997 6666555555 7763
No 63
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv. viciae IolD. IolD plays an important role in myo-inositol catabolism.
Probab=98.16 E-value=3.4e-06 Score=76.25 Aligned_cols=61 Identities=11% Similarity=0.128 Sum_probs=45.6
Q ss_pred CCCCCCCchhhhhHHhhhhhcCCCcEEEEEEcCCccCccchHHHHHHHHHHcCCCE-EEEEecCCcccc
Q 021087 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLSSSSVATMAGPL-VPIYQNNFEAMV 303 (317)
Q Consensus 236 sg~lGtqlp~AvG~A~A~kl~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~lPv-VFV~eNNgyAIS 303 (317)
.+.+|..+|.|+|+++|. .++.|||+.|||+...+- . .|..|+.+++|+ ++|++||+|++-
T Consensus 47 ~gsmG~~lpaAiGa~la~----p~~~vv~i~GDGsf~m~~-~--eL~Ta~~~~lpv~ivV~NN~~~g~~ 108 (205)
T cd02003 47 YSCMGYEIAAGLGAKLAK----PDREVYVLVGDGSYLMLH-S--EIVTAVQEGLKIIIVLFDNHGFGCI 108 (205)
T ss_pred cchhhhHHHHHHHHHHhC----CCCeEEEEEccchhhccH-H--HHHHHHHcCCCCEEEEEECCccHHH
Confidence 366777777777777664 467899999999999853 3 488899999995 555555668763
No 64
>PRK07524 hypothetical protein; Provisional
Probab=98.15 E-value=1.9e-06 Score=87.84 Aligned_cols=61 Identities=25% Similarity=0.299 Sum_probs=50.6
Q ss_pred CCCCCCCchhhhhHHhhhhhcCCCcEEEEEEcCCccCccchHHHHHHHHHHcCCCEEEEEecC-Ccccc
Q 021087 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNN-FEAMV 303 (317)
Q Consensus 236 sg~lGtqlp~AvG~A~A~kl~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~lPvVFV~eNN-gyAIS 303 (317)
.+.+|.++|.|+|+++|. .++.|||++|||+.... +.| |..|+.+++|+++||-|| +|++.
T Consensus 406 ~g~mG~~lp~aiGa~lA~----p~~~vv~i~GDG~f~~~-~~e--l~ta~~~~lpi~~vV~NN~~~g~i 467 (535)
T PRK07524 406 YGTLGYGLPAAIGAALGA----PERPVVCLVGDGGLQFT-LPE--LASAVEADLPLIVLLWNNDGYGEI 467 (535)
T ss_pred cccccchHHHHHHHHHhC----CCCcEEEEEcchHHhhh-HHH--HHHHHHhCCCeEEEEEECCchHHH
Confidence 388999999999999885 46789999999999744 566 999999999988888887 58743
No 65
>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD). SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity.
Probab=98.15 E-value=1.2e-06 Score=77.15 Aligned_cols=58 Identities=24% Similarity=0.141 Sum_probs=46.0
Q ss_pred CCCCCCchhhhhHHhhhhhcCCCcEEEEEEcCCccCccchHHHHHHHHHHcCCCEEEEEecCC-ccc
Q 021087 237 SPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNNF-EAM 302 (317)
Q Consensus 237 g~lGtqlp~AvG~A~A~kl~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~lPvVFV~eNNg-yAI 302 (317)
+.+|..+|.|+|+++|. ++.|||++|||+..-. ..| |..|+.+++|+++||-||+ |++
T Consensus 51 g~mG~~l~~aiGa~la~-----~~~Vv~i~GDGsf~m~-~~e--L~ta~~~~l~v~ivVlNN~~~g~ 109 (175)
T cd02009 51 SGIDGTLSTALGIALAT-----DKPTVLLTGDLSFLHD-LNG--LLLGKQEPLNLTIVVINNNGGGI 109 (175)
T ss_pred cchhhHHHHHHHHHhcC-----CCCEEEEEehHHHHHh-HHH--HHhccccCCCeEEEEEECCCCch
Confidence 66889999999999884 4568999999999876 344 8889999999666665555 775
No 66
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=98.13 E-value=2.9e-06 Score=87.15 Aligned_cols=59 Identities=24% Similarity=0.374 Sum_probs=49.3
Q ss_pred CCCCCCchhhhhHHhhhhhcCCCcEEEEEEcCCccCccchHHHHHHHHHHcCCCEEEEEecCC-ccc
Q 021087 237 SPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNNF-EAM 302 (317)
Q Consensus 237 g~lGtqlp~AvG~A~A~kl~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~lPvVFV~eNNg-yAI 302 (317)
+.+|..+|.|+|+++|.+ ++.|||+.|||+.... ..| |..|+.+++|+|+||-||+ |.+
T Consensus 414 g~mG~~l~~aiGa~la~p----~~~vv~i~GDG~f~m~-~~e--L~Ta~~~~lpvi~vV~NN~~~~~ 473 (563)
T PRK08527 414 GTMGYGLPAALGAKLAVP----DKVVINFTGDGSILMN-IQE--LMTAVEYKIPVINIILNNNFLGM 473 (563)
T ss_pred ccccchHHHHHHHHHhCC----CCcEEEEecCchhccc-HHH--HHHHHHhCCCeEEEEEECCcchh
Confidence 789999999999988864 5679999999999984 456 9999999999887777777 654
No 67
>PRK08266 hypothetical protein; Provisional
Probab=98.13 E-value=2.6e-06 Score=86.81 Aligned_cols=61 Identities=23% Similarity=0.223 Sum_probs=49.6
Q ss_pred CCCCCCCchhhhhHHhhhhhcCCCcEEEEEEcCCccCccchHHHHHHHHHHcCCCEEEEEecC-Ccccc
Q 021087 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNN-FEAMV 303 (317)
Q Consensus 236 sg~lGtqlp~AvG~A~A~kl~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~lPvVFV~eNN-gyAIS 303 (317)
.+.+|..+|.|+|++++. .++.|+|++|||+...+ . + .|..|+.+++|+++||-|| +|++.
T Consensus 401 ~GsmG~~lp~aiGa~la~----p~~~vv~v~GDG~f~~~-~-~-eL~ta~~~~lpv~ivv~NN~~y~~~ 462 (542)
T PRK08266 401 QGTLGYGFPTALGAKVAN----PDRPVVSITGDGGFMFG-V-Q-ELATAVQHNIGVVTVVFNNNAYGNV 462 (542)
T ss_pred CcccccHHHHHHHHHHhC----CCCcEEEEEcchhhhcc-H-H-HHHHHHHhCCCeEEEEEeCCcchHH
Confidence 378888888888887764 46789999999999998 3 4 5999999999988877777 58753
No 68
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=98.13 E-value=2.9e-06 Score=87.23 Aligned_cols=60 Identities=27% Similarity=0.335 Sum_probs=50.5
Q ss_pred cCCCCCCCchhhhhHHhhhhhcCCCcEEEEEEcCCccCccchHHHHHHHHHHcCCCEEEEEecCC-cc
Q 021087 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNNF-EA 301 (317)
Q Consensus 235 ~sg~lGtqlp~AvG~A~A~kl~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~lPvVFV~eNNg-yA 301 (317)
..+.+|.++|.|+|+++|.. ++.|||++|||+.... + . .|..|+.+++|+++||-||+ |.
T Consensus 419 ~~g~mG~~lp~aiGa~la~p----~~~vv~i~GDG~f~~~-~-~-eL~ta~~~~lpv~~vV~NN~~~~ 479 (574)
T PRK06882 419 GAGTMGFGLPAAIGVKFAHP----EATVVCVTGDGSIQMN-I-Q-ELSTAKQYDIPVVIVSLNNRFLG 479 (574)
T ss_pred CcccccchhHHHHHHHhhcC----CCcEEEEEcchhhhcc-H-H-HHHHHHHhCCCeEEEEEECchhH
Confidence 34789999999999998853 5679999999999886 3 3 59999999999888888888 54
No 69
>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor. In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.
Probab=98.11 E-value=3.8e-06 Score=75.54 Aligned_cols=60 Identities=20% Similarity=0.152 Sum_probs=45.3
Q ss_pred CCCCCCchhhhhHHhhhhhcCCCcEEEEEEcCCcc-CccchHHHHHHHHHHcCCCEEEEEecCC-cccc
Q 021087 237 SPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGT-SEQLWKPLSSSSVATMAGPLVPIYQNNF-EAMV 303 (317)
Q Consensus 237 g~lGtqlp~AvG~A~A~kl~g~~~vvv~~~GDGat-seGdfhE~ALN~Aa~~~lPvVFV~eNNg-yAIS 303 (317)
+.+|..+|.|+|+++|. .++.||++.|||+. .-+ +.| |-.|..+++||++||-||+ |++-
T Consensus 51 g~mG~glpaAiGa~la~----p~r~Vv~i~GDGs~f~m~-~~e--L~ta~~~~lpv~iiVlnN~~yg~~ 112 (193)
T cd03375 51 TLHGRALAVATGVKLAN----PDLTVIVVSGDGDLAAIG-GNH--FIHAARRNIDITVIVHNNQIYGLT 112 (193)
T ss_pred hhhccHHHHHHHHHHhC----CCCeEEEEeccchHhhcc-HHH--HHHHHHhCCCeEEEEEcCcccccC
Confidence 66787777777777764 47889999999994 333 344 8999999999877776666 7753
No 70
>PRK06163 hypothetical protein; Provisional
Probab=98.10 E-value=3e-06 Score=77.34 Aligned_cols=60 Identities=25% Similarity=0.347 Sum_probs=46.3
Q ss_pred CCCCCCCchhhhhHHhhhhhcCCCcEEEEEEcCCccCccchHHHHHHHHHHc-CCCEEEEEecC-Cccc
Q 021087 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLSSSSVATM-AGPLVPIYQNN-FEAM 302 (317)
Q Consensus 236 sg~lGtqlp~AvG~A~A~kl~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~-~lPvVFV~eNN-gyAI 302 (317)
.+.+|..+|.|+|+++|. .++.|||++|||+..-.. . .|..|+.+ ++|+++||-|| +|++
T Consensus 56 ~GsMG~glpaAiGaalA~----p~r~Vv~i~GDG~f~m~~-~--eL~Ta~~~~~lpi~ivV~NN~~yg~ 117 (202)
T PRK06163 56 LGSMGLAFPIALGVALAQ----PKRRVIALEGDGSLLMQL-G--ALGTIAALAPKNLTIIVMDNGVYQI 117 (202)
T ss_pred ecccccHHHHHHHHHHhC----CCCeEEEEEcchHHHHHH-H--HHHHHHHhcCCCeEEEEEcCCchhh
Confidence 477999999999998885 366799999999985442 2 47778776 68977777777 5886
No 71
>PRK12474 hypothetical protein; Provisional
Probab=98.10 E-value=4.3e-06 Score=85.14 Aligned_cols=61 Identities=25% Similarity=0.282 Sum_probs=49.7
Q ss_pred CCCCCCCchhhhhHHhhhhhcCCCcEEEEEEcCCccCccchHHHHHHHHHHcCCCEEEEEecCC-cccc
Q 021087 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNNF-EAMV 303 (317)
Q Consensus 236 sg~lGtqlp~AvG~A~A~kl~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~lPvVFV~eNNg-yAIS 303 (317)
.+.+|..+|.|+|+++|.+ ++.|||+.|||+..-.- .| |..|+.+++|+++||-||+ |.+-
T Consensus 388 ~gsmG~glpaAiGa~lA~p----~r~vv~i~GDG~f~m~~-qE--L~Ta~r~~lpv~iiV~NN~~y~~i 449 (518)
T PRK12474 388 GGSIGQGLPLAAGAAVAAP----DRKVVCPQGDGGAAYTM-QA--LWTMARENLDVTVVIFANRSYAIL 449 (518)
T ss_pred CCccCccHHHHHHHHHHCC----CCcEEEEEcCchhcchH-HH--HHHHHHHCCCcEEEEEcCCcchHH
Confidence 4888888888888888863 67799999999998774 45 9999999999777666666 8763
No 72
>PRK07586 hypothetical protein; Validated
Probab=98.09 E-value=2.9e-06 Score=86.00 Aligned_cols=60 Identities=23% Similarity=0.239 Sum_probs=47.2
Q ss_pred CCCCCCCchhhhhHHhhhhhcCCCcEEEEEEcCCccCccchHHHHHHHHHHcCCCEEEEE-ecCCccc
Q 021087 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLSSSSVATMAGPLVPIY-QNNFEAM 302 (317)
Q Consensus 236 sg~lGtqlp~AvG~A~A~kl~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~lPvVFV~-eNNgyAI 302 (317)
.+.+|..+|.|+|+++|.. ++.|||++|||+.... .. .|..|..+++|+++|| +|++|++
T Consensus 384 ~g~mG~~lpaaiGa~lA~p----~r~Vv~i~GDGsf~m~-~~--EL~Ta~~~~lpv~ivV~NN~~y~~ 444 (514)
T PRK07586 384 GGAIGQGLPLATGAAVACP----DRKVLALQGDGSAMYT-IQ--ALWTQARENLDVTTVIFANRAYAI 444 (514)
T ss_pred CcccccHHHHHHHHHHhCC----CCeEEEEEechHHHhH-HH--HHHHHHHcCCCCEEEEEeCchhHH
Confidence 4778888888888888753 6789999999999876 34 4999999999966655 5555875
No 73
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=98.09 E-value=3e-06 Score=87.22 Aligned_cols=59 Identities=27% Similarity=0.366 Sum_probs=48.4
Q ss_pred CCCCCCchhhhhHHhhhhhcCCCcEEEEEEcCCccCccchHHHHHHHHHHcCCCEEEEEecCC-ccc
Q 021087 237 SPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNNF-EAM 302 (317)
Q Consensus 237 g~lGtqlp~AvG~A~A~kl~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~lPvVFV~eNNg-yAI 302 (317)
+++|.++|.|+|+++|. .++.||+++|||+... .+.| |+.|..+++|+++||-||+ |++
T Consensus 424 g~mG~glpaAiGaala~----p~~~vv~i~GDGsf~m-~~~e--L~ta~r~~lpi~ivV~NN~~~~~ 483 (571)
T PRK07710 424 GTMGFGLPAAIGAQLAK----PDETVVAIVGDGGFQM-TLQE--LSVIKELSLPVKVVILNNEALGM 483 (571)
T ss_pred ccccchHHHHHHHHHhC----CCCcEEEEEcchHHhh-hHHH--HHHHHHhCCCeEEEEEECchHHH
Confidence 67888899899988885 3667999999999986 4566 9999999999766666666 776
No 74
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=98.08 E-value=3.8e-06 Score=86.08 Aligned_cols=58 Identities=21% Similarity=0.271 Sum_probs=49.1
Q ss_pred CCCCCCCchhhhhHHhhhhhcCCCcEEEEEEcCCccCccchHHHHHHHHHHcCCCEEEEEecCCc
Q 021087 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNNFE 300 (317)
Q Consensus 236 sg~lGtqlp~AvG~A~A~kl~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~lPvVFV~eNNgy 300 (317)
.+++|.++|.|+|+++|. .++.|||++|||+.... +.| |..|+.+++|+++||-||++
T Consensus 411 ~g~mG~~l~aaiGa~la~----~~~~vv~~~GDG~f~~~-~~e--L~ta~~~~l~~~~vv~NN~~ 468 (558)
T TIGR00118 411 LGTMGFGLPAAIGAKVAK----PESTVICITGDGSFQMN-LQE--LSTAVQYDIPVKILILNNRY 468 (558)
T ss_pred cccccchhhHHHhhhhhC----CCCcEEEEEcchHHhcc-HHH--HHHHHHhCCCeEEEEEeCCc
Confidence 377999999999988774 36779999999999884 455 99999999999999988884
No 75
>PRK07064 hypothetical protein; Provisional
Probab=98.07 E-value=4.7e-06 Score=84.95 Aligned_cols=63 Identities=21% Similarity=0.272 Sum_probs=48.8
Q ss_pred ccCCCCCCCchhhhhHHhhhhhcCCCcEEEEEEcCCccCccchHHHHHHHHHHcCCCEEEEEecCC-cccc
Q 021087 234 TISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNNF-EAMV 303 (317)
Q Consensus 234 ~~sg~lGtqlp~AvG~A~A~kl~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~lPvVFV~eNNg-yAIS 303 (317)
+..+.+|..+|.|+|+++|. .++.|||++|||+....- . .|..|+.+++|+++||-||+ |++-
T Consensus 402 ~~~g~mG~~lpaAiGa~lA~----p~~~vv~i~GDGsf~m~~-~--eL~Ta~~~~lpv~ivV~NN~~yg~~ 465 (544)
T PRK07064 402 ALGGGIGQGLAMAIGAALAG----PGRKTVGLVGDGGLMLNL-G--ELATAVQENANMVIVLMNDGGYGVI 465 (544)
T ss_pred cCCCccccccchhhhhhhhC----cCCcEEEEEcchHhhhhH-H--HHHHHHHhCCCeEEEEEeCChhHHH
Confidence 33467888888888888874 366799999999997753 3 59999999999766655555 8764
No 76
>PRK06154 hypothetical protein; Provisional
Probab=98.04 E-value=5.2e-06 Score=85.67 Aligned_cols=60 Identities=20% Similarity=0.207 Sum_probs=49.0
Q ss_pred CCCCCCCchhhhhHHhhhhhcCCCcEEEEEEcCCccCccchHHHHHHHHHHcCCCEEEEEecCC-ccc
Q 021087 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNNF-EAM 302 (317)
Q Consensus 236 sg~lGtqlp~AvG~A~A~kl~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~lPvVFV~eNNg-yAI 302 (317)
.+++|..+|.|+|+++|.+ ++.|||++|||+....- . .|..|+.+++|+|+||-||+ |.+
T Consensus 430 ~gsmG~glpaaiGa~la~p----~r~Vv~i~GDG~f~m~~-~--EL~Ta~r~~lpi~~vV~NN~~yg~ 490 (565)
T PRK06154 430 TTQLGYGLGLAMGAKLARP----DALVINLWGDAAFGMTG-M--DFETAVRERIPILTILLNNFSMGG 490 (565)
T ss_pred CcccccHHHHHHHHHHhCC----CCcEEEEEcchHHhccH-H--HHHHHHHhCCCeEEEEEECCccce
Confidence 4678888888888888753 67899999999997764 3 59999999999877777777 874
No 77
>PRK05858 hypothetical protein; Provisional
Probab=98.03 E-value=7.1e-06 Score=83.97 Aligned_cols=60 Identities=17% Similarity=0.107 Sum_probs=48.8
Q ss_pred CCCCCCCchhhhhHHhhhhhcCCCcEEEEEEcCCccCccchHHHHHHHHHHcCCCEEEEEecCC-ccc
Q 021087 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNNF-EAM 302 (317)
Q Consensus 236 sg~lGtqlp~AvG~A~A~kl~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~lPvVFV~eNNg-yAI 302 (317)
.+.+|..+|.|+|+++|.+ ++.|||++|||+.... .+| |..|+.+++|+++||-||+ |.+
T Consensus 406 ~gsmG~~lp~aiGa~la~p----~r~vv~i~GDG~f~~~-~~e--L~Ta~~~~lpi~ivV~NN~~y~~ 466 (542)
T PRK05858 406 FGCLGTGPGYALAARLARP----SRQVVLLQGDGAFGFS-LMD--VDTLVRHNLPVVSVIGNNGIWGL 466 (542)
T ss_pred ccccccchhHHHHHHHhCC----CCcEEEEEcCchhcCc-HHH--HHHHHHcCCCEEEEEEeCCchhh
Confidence 3778888888888888753 6789999999999876 466 9999999999777666665 875
No 78
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=98.02 E-value=6.8e-06 Score=84.31 Aligned_cols=60 Identities=22% Similarity=0.238 Sum_probs=47.5
Q ss_pred CCCCCCCchhhhhHHhhhhhcCCCcEEEEEEcCCccCccchHHHHHHHHHHcCCCEEEEEecCC-ccc
Q 021087 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNNF-EAM 302 (317)
Q Consensus 236 sg~lGtqlp~AvG~A~A~kl~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~lPvVFV~eNNg-yAI 302 (317)
.+.+|.++|.|+|++++ ..++.|||++|||+....- . .|..|+.+++|+++||.||+ |++
T Consensus 414 ~g~mG~glpaaiGa~la----~p~~~vv~i~GDGsf~~~~--~-el~ta~~~~l~i~~vv~nN~~~~~ 474 (557)
T PRK08199 414 SGSMGYGLPAAIAAKLL----FPERTVVAFAGDGCFLMNG--Q-ELATAVQYGLPIIVIVVNNGMYGT 474 (557)
T ss_pred CccccchHHHHHHHHHh----CCCCcEEEEEcchHhhccH--H-HHHHHHHhCCCeEEEEEeCCcchH
Confidence 46777777777776665 4477899999999987542 3 69999999999999888888 774
No 79
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=98.01 E-value=6e-06 Score=85.42 Aligned_cols=61 Identities=21% Similarity=0.296 Sum_probs=50.1
Q ss_pred cCCCCCCCchhhhhHHhhhhhcCCCcEEEEEEcCCccCccchHHHHHHHHHHcCCCEEEEEecCC-ccc
Q 021087 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNNF-EAM 302 (317)
Q Consensus 235 ~sg~lGtqlp~AvG~A~A~kl~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~lPvVFV~eNNg-yAI 302 (317)
..+.+|.++|.|+|+++|.+ ++.|||+.|||+..-.- . .|..|+.+++|+++||-||+ |.+
T Consensus 428 ~~g~mG~glpaaiGaala~p----~~~vv~i~GDG~f~m~~-~--eL~Ta~~~~l~~~~vV~NN~~y~~ 489 (585)
T CHL00099 428 GLGTMGYGLPAAIGAQIAHP----NELVICISGDASFQMNL-Q--ELGTIAQYNLPIKIIIINNKWQGM 489 (585)
T ss_pred cccchhhhHHHHHHHHHhCC----CCeEEEEEcchhhhhhH-H--HHHHHHHhCCCeEEEEEECCcchH
Confidence 34789999999999988864 67799999999997652 3 59999999999888888888 554
No 80
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=98.00 E-value=7.4e-06 Score=85.05 Aligned_cols=59 Identities=24% Similarity=0.303 Sum_probs=49.0
Q ss_pred CCCCCCchhhhhHHhhhhhcCCCcEEEEEEcCCccCccchHHHHHHHHHHcCCCEEEEEecCC-ccc
Q 021087 237 SPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNNF-EAM 302 (317)
Q Consensus 237 g~lGtqlp~AvG~A~A~kl~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~lPvVFV~eNNg-yAI 302 (317)
+.+|..+|.|+|+++|. .++.|||+.|||+....- . .|..|+.+++|+|+||-||+ |++
T Consensus 430 gsmG~glpaaiGa~lA~----p~r~Vv~i~GDG~f~m~~-~--EL~Ta~r~~lpvi~vV~NN~~y~~ 489 (595)
T PRK09107 430 GTMGYGLPAALGVQIAH----PDALVIDIAGDASIQMCI-Q--EMSTAVQYNLPVKIFILNNQYMGM 489 (595)
T ss_pred hhhhhhHHHHHHHHHhC----CCCeEEEEEcCchhhccH-H--HHHHHHHhCCCeEEEEEeCCccHH
Confidence 77888888888888875 367899999999998774 3 49999999999888887777 765
No 81
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=98.00 E-value=5.8e-06 Score=85.74 Aligned_cols=59 Identities=22% Similarity=0.227 Sum_probs=47.6
Q ss_pred CCCCCCchhhhhHHhhhhhcCCCcEEEEEEcCCccCccchHHHHHHHHHHcCCCEEEEEecCC-ccc
Q 021087 237 SPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNNF-EAM 302 (317)
Q Consensus 237 g~lGtqlp~AvG~A~A~kl~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~lPvVFV~eNNg-yAI 302 (317)
+++|..+|.|+|+++|. .++.||+++|||+.... ..| |..|..+++|+|+||-||+ |++
T Consensus 418 gsmG~glpaaiGa~lA~----pdr~Vv~i~GDG~f~m~-~~E--L~Ta~r~~lpvv~iV~NN~~yg~ 477 (588)
T TIGR01504 418 GPLGWTIPAALGVCAAD----PKRNVVALSGDYDFQFM-IEE--LAVGAQHNIPYIHVLVNNAYLGL 477 (588)
T ss_pred ccccchHhHHHhhhhhC----CCCcEEEEEcchHhhcc-HHH--HHHHHHhCCCeEEEEEeCCchHH
Confidence 77888888888888775 36779999999999887 345 9999999999766666666 865
No 82
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=97.98 E-value=8.2e-06 Score=84.06 Aligned_cols=60 Identities=25% Similarity=0.307 Sum_probs=48.7
Q ss_pred CCCCCCCchhhhhHHhhhhhcCCCcEEEEEEcCCccCccchHHHHHHHHHHcCCCEEEEEecCC-ccc
Q 021087 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNNF-EAM 302 (317)
Q Consensus 236 sg~lGtqlp~AvG~A~A~kl~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~lPvVFV~eNNg-yAI 302 (317)
.+++|..+|.|+|+++|.. ++.|||++|||+....- . .|..|..+++|+++||-||+ |.+
T Consensus 422 ~gsmG~glpaAiGa~la~p----~r~Vv~i~GDG~f~m~~-~--eL~Ta~r~~lpv~ivV~NN~~y~~ 482 (574)
T PRK06466 422 LGTMGFGLPAAMGVKLAFP----DQDVACVTGEGSIQMNI-Q--ELSTCLQYGLPVKIINLNNGALGM 482 (574)
T ss_pred cchhhchHHHHHHHHHhCC----CCeEEEEEcchhhhccH-H--HHHHHHHhCCCeEEEEEeCCccHH
Confidence 3788999999999888864 66799999999998773 4 49999999999777666665 775
No 83
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=97.96 E-value=0.00019 Score=78.56 Aligned_cols=201 Identities=14% Similarity=0.120 Sum_probs=129.8
Q ss_pred CCceEEeCCCCCc-ccC---CCCCCCCHHHHHHHHHHHHHHHHHHHHHHH-HHhcCcccccccCCchHHHHHHHHhccC-
Q 021087 106 VPCFRVLDDNGEL-IKG---SDFQQVSKEVAVKMYSHMVTLQVMDSVLYE-AQRQGRFSFYLTTIGEEAINIGSAAALS- 179 (317)
Q Consensus 106 ~p~~rvld~~G~~-~~~---~~~~~ls~e~l~~lYr~M~~~R~~D~~~~~-lqrqGrigfy~~~~GqEA~~VG~a~AL~- 179 (317)
+-...|.|++-+. +.. ....+.+.|+-+.+.++....-.||.-+.. ...|.|.+ --|-|.+-.-+-..|+
T Consensus 465 ~EymhI~dpeqr~W~Q~rvE~~~~kp~~~eq~~iL~~LnaaEaFEtFLqtkyvGqkRFs----lEG~Es~iplld~~~~~ 540 (1228)
T PRK12270 465 IEYMHIQDPEQRRWLQERVERPHEKPTREEQKRILSKLNAAEAFETFLQTKYVGQKRFS----LEGGESLIPLLDAVLDQ 540 (1228)
T ss_pred eeeeecCCHHHHHHHHHHhhCCCCCCCHHHHHHHHHHhhhHHHHHHHHhhhcccceeee----ecchhhHHHHHHHHHHH
Confidence 4456777776432 110 123467899999999999888888887743 33455532 2444554433433342
Q ss_pred -----CCCeeec-CCchHHHHHH--hCCCHHHHHHHHhhCCCCCCCCCCCC--cccCCCCC-----------cccccCCC
Q 021087 180 -----ADDFILP-QYREPGVLLW--RGYTLQQFANQVFANKADDGKGRQMP--IHYGSKKL-----------NYITISSP 238 (317)
Q Consensus 180 -----~~D~v~~-~YR~~g~~l~--rG~~l~~~~~q~~G~~~g~~kGr~mp--~H~~s~~~-----------~i~~~sg~ 238 (317)
-+.+++. .||+.=-.|+ -|.+..+++.|+=||......+..+. -|++.... .+...-|+
T Consensus 541 aa~~~l~evvigm~HRGRLNVLani~gK~y~qiF~EFegn~dp~~~~GsGDVKYHlG~eG~~~~~~g~~~~v~laaNPSH 620 (1228)
T PRK12270 541 AAEHGLDEVVIGMAHRGRLNVLANIVGKPYSQIFREFEGNLDPRSAQGSGDVKYHLGAEGTFTQMFGDEIKVSLAANPSH 620 (1228)
T ss_pred HHhcCCceEEecccccchHHHHHHHhcCCHHHHHHHhcCCCCccccCcCcceeeeccCceeeeccCCCeeEEEEecCchh
Confidence 2345555 6998764444 59999999999999875432222222 23332111 11112244
Q ss_pred CCCCchhhhhHHhhhhh--c-C---CCcEEEEEEcCCc-cCccchHHHHHHHHHHcCCC---EEEEEecCCccccccccc
Q 021087 239 IATQLPQAVGVAYSLKM--E-K---KDACAVAYTGDGG-TSEQLWKPLSSSSVATMAGP---LVPIYQNNFEAMVLLLRV 308 (317)
Q Consensus 239 lGtqlp~AvG~A~A~kl--~-g---~~~vvv~~~GDGa-tseGdfhE~ALN~Aa~~~lP---vVFV~eNNgyAIStP~~~ 308 (317)
|-+-=|+.-|++-|.+- . + -....+++-||.| +.+|.++| .||+|..|+.| +|+||.||+++..|..++
T Consensus 621 LEavdpVleGivRakQd~l~~g~~~~~vlpi~~hGdaafagQGvV~E-tlnla~l~~y~tGGtIhvivNNqiGftT~p~~ 699 (1228)
T PRK12270 621 LEAVDPVLEGIVRAKQDRLDKGEEGFTVLPILLHGDAAFAGQGVVAE-TLNLSQLRGYRTGGTIHIVVNNQVGFTTAPES 699 (1228)
T ss_pred hhhcchHhhhhhhhhhhhhcccccCCceeEEEEeccccccCCchHHH-HHHHHhccCCCCCCeEEEEEecCcccccCccc
Confidence 44444667788777552 2 1 2446888999999 89999999 99999999999 999999999999998775
Q ss_pred ccc
Q 021087 309 VHM 311 (317)
Q Consensus 309 ~~~ 311 (317)
...
T Consensus 700 ~Rs 702 (1228)
T PRK12270 700 SRS 702 (1228)
T ss_pred ccc
Confidence 543
No 84
>PLN02573 pyruvate decarboxylase
Probab=97.96 E-value=5.6e-06 Score=85.77 Aligned_cols=61 Identities=18% Similarity=0.163 Sum_probs=49.4
Q ss_pred CCCCCCCchhhhhHHhhhhhcCCCcEEEEEEcCCccCccchHHHHHHHHHHcCCCEEEEEecCC-cccc
Q 021087 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNNF-EAMV 303 (317)
Q Consensus 236 sg~lGtqlp~AvG~A~A~kl~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~lPvVFV~eNNg-yAIS 303 (317)
.+++|..+|.|+|+++|.. ++.|||+.|||+....- . .|..|+.+++|+++||-||+ |.+.
T Consensus 427 ~gsmG~glpaaiGa~lA~p----~r~vv~i~GDG~f~m~~-~--EL~Ta~r~~lpvv~vV~NN~~yg~~ 488 (578)
T PLN02573 427 YGSIGWSVGATLGYAQAAP----DKRVIACIGDGSFQVTA-Q--DVSTMIRCGQKSIIFLINNGGYTIE 488 (578)
T ss_pred hhhhhhhhhHHHHHHHhCC----CCceEEEEeccHHHhHH-H--HHHHHHHcCCCCEEEEEeCCceeEE
Confidence 4788999999999888864 67899999999997764 4 49999999999766666666 8764
No 85
>PRK11269 glyoxylate carboligase; Provisional
Probab=97.94 E-value=9.9e-06 Score=83.83 Aligned_cols=61 Identities=23% Similarity=0.271 Sum_probs=50.1
Q ss_pred cCCCCCCCchhhhhHHhhhhhcCCCcEEEEEEcCCccCccchHHHHHHHHHHcCCCEEEEEecCC-ccc
Q 021087 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNNF-EAM 302 (317)
Q Consensus 235 ~sg~lGtqlp~AvG~A~A~kl~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~lPvVFV~eNNg-yAI 302 (317)
..+++|..+|.|+|+++|.. ++.|||++|||+..-.- .| |..|..+++|+++||-||+ |++
T Consensus 417 ~~G~mG~glpaAiGa~la~p----~r~Vv~i~GDG~f~m~~-~e--L~Ta~~~~lpv~~vV~NN~~~g~ 478 (591)
T PRK11269 417 QAGPLGWTIPAALGVRAADP----DRNVVALSGDYDFQFLI-EE--LAVGAQFNLPYIHVLVNNAYLGL 478 (591)
T ss_pred ccccccchhhhHHhhhhhCC----CCcEEEEEccchhhcCH-HH--HHHHHHhCCCeEEEEEeCCchhH
Confidence 34789999999999888753 67799999999998763 45 9999999999888877777 765
No 86
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=97.94 E-value=1.1e-05 Score=83.09 Aligned_cols=61 Identities=28% Similarity=0.317 Sum_probs=47.9
Q ss_pred CCCCCCCchhhhhHHhhhhhcCCCcEEEEEEcCCccCccchHHHHHHHHHHcCCCEEEEEecCC-cccc
Q 021087 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNNF-EAMV 303 (317)
Q Consensus 236 sg~lGtqlp~AvG~A~A~kl~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~lPvVFV~eNNg-yAIS 303 (317)
-+.+|..+|.|+|+++|. .++.|||++|||+.... ..| |..|..+++|+++||-||+ |++-
T Consensus 407 ~G~mG~~lpaAiGa~la~----p~r~vv~i~GDGsf~m~-~~e--L~Ta~~~~lpv~ivV~NN~~~g~i 468 (574)
T PRK09124 407 HGSMANAMPQALGAQAAH----PGRQVVALSGDGGFSML-MGD--FLSLVQLKLPVKIVVFNNSVLGFV 468 (574)
T ss_pred cccccchHHHHHHHHHhC----CCCeEEEEecCcHHhcc-HHH--HHHHHHhCCCeEEEEEeCCccccH
Confidence 377888888888888775 36779999999999776 355 8899999999766665555 8764
No 87
>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria. PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.
Probab=97.92 E-value=5.6e-06 Score=76.97 Aligned_cols=62 Identities=24% Similarity=0.298 Sum_probs=47.3
Q ss_pred cccCCCCCCCchhhhhHHhhhhhcCCCcEEEEEEcCCcc-CccchHHHHHHHHHHcCCCEEEEEecCC-cc
Q 021087 233 ITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGT-SEQLWKPLSSSSVATMAGPLVPIYQNNF-EA 301 (317)
Q Consensus 233 ~~~sg~lGtqlp~AvG~A~A~kl~g~~~vvv~~~GDGat-seGdfhE~ALN~Aa~~~lPvVFV~eNNg-yA 301 (317)
+...+++|.++|.|+|++.+ ..++.|||+.|||++ .-+ +. .|..|+.+++|+++||-||+ |+
T Consensus 58 ~~~~gsmG~GlpaAiGa~~a----~p~r~VV~i~GDG~~~~m~-~~--eL~ta~~~~~pv~~vVlNN~~yg 121 (235)
T cd03376 58 FENAAAVASGIEAALKALGR----GKDITVVAFAGDGGTADIG-FQ--ALSGAAERGHDILYICYDNEAYM 121 (235)
T ss_pred hcCHHHHHHHHHHHHHHhcc----CCCCeEEEEEcCchHHhhH-HH--HHHHHHHcCCCeEEEEECCcccc
Confidence 33446777777777776444 346789999999995 444 33 59999999999888888888 77
No 88
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=97.92 E-value=1.2e-05 Score=77.70 Aligned_cols=59 Identities=17% Similarity=0.072 Sum_probs=46.2
Q ss_pred CCCCCCchhhhhHHhhhhhcCCCcEEEEEEcCCcc-CccchHHHHHHHHHHcCCCEEEEEecCC-ccc
Q 021087 237 SPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGT-SEQLWKPLSSSSVATMAGPLVPIYQNNF-EAM 302 (317)
Q Consensus 237 g~lGtqlp~AvG~A~A~kl~g~~~vvv~~~GDGat-seGdfhE~ALN~Aa~~~lPvVFV~eNNg-yAI 302 (317)
+..|-.+|.|+|+++|. .++.|||+.|||+. +.| .. .|-.|+.+++|+++||-||+ |+.
T Consensus 70 g~mG~alpaAiGaklA~----pd~~VV~i~GDG~~~~mg-~~--eL~tA~r~nl~i~vIV~NN~~YG~ 130 (301)
T PRK05778 70 TLHGRAIAFATGAKLAN----PDLEVIVVGGDGDLASIG-GG--HFIHAGRRNIDITVIVENNGIYGL 130 (301)
T ss_pred hhhccHHHHHHHHHHHC----CCCcEEEEeCccHHHhcc-HH--HHHHHHHHCCCcEEEEEeCchhhc
Confidence 55788888888887775 47789999999996 455 23 48889999999888877777 765
No 89
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=97.87 E-value=2.4e-05 Score=80.70 Aligned_cols=56 Identities=21% Similarity=0.281 Sum_probs=46.9
Q ss_pred CCCCCCchhhhhHHhhhhhcCCCcEEEEEEcCCccCccchHHHHHHHHHHcCCCEEEEEecCC
Q 021087 237 SPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNNF 299 (317)
Q Consensus 237 g~lGtqlp~AvG~A~A~kl~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~lPvVFV~eNNg 299 (317)
+.+|.++|.|+|+++|. .++.|||++|||+... ... .|+.|+.+++|+++||-||+
T Consensus 437 gsmG~~l~~aiGa~la~----~~~~vv~i~GDGsf~~--~~~-el~ta~~~~l~~~~vv~NN~ 492 (578)
T PRK06112 437 AGLGWGVPMAIGAKVAR----PGAPVICLVGDGGFAH--VWA-ELETARRMGVPVTIVVLNNG 492 (578)
T ss_pred cccccHHHHHHHHHhhC----CCCcEEEEEcchHHHh--HHH-HHHHHHHhCCCeEEEEEeCC
Confidence 67888888888887764 4678999999999864 345 79999999999988888887
No 90
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=97.87 E-value=1.5e-05 Score=82.61 Aligned_cols=60 Identities=20% Similarity=0.248 Sum_probs=47.4
Q ss_pred CCCCCCchhhhhHHhhhhhcCCCcEEEEEEcCCccCccchHHHHHHHHHHc-----CCCEEEEEecCC-ccc
Q 021087 237 SPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLSSSSVATM-----AGPLVPIYQNNF-EAM 302 (317)
Q Consensus 237 g~lGtqlp~AvG~A~A~kl~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~-----~lPvVFV~eNNg-yAI 302 (317)
+.+|..+|.|+|+++|. .++.|||++|||+....-..| |..|+.+ ++|+++||-||+ |++
T Consensus 415 g~mG~glpaaiGa~la~----p~~~Vv~i~GDG~f~m~~~~E--L~Ta~r~~~~~~~lpviivV~NN~~~~~ 480 (597)
T PRK08273 415 ATMGPAVPYAIAAKFAH----PDRPVIALVGDGAMQMNGMAE--LITVAKYWRQWSDPRLIVLVLNNRDLNQ 480 (597)
T ss_pred ccccchHHHHHHHHHhC----CCCcEEEEEcchhHhccchHH--HHHHHHHhhcccCCCEEEEEEeCCcchH
Confidence 67888888888888875 366799999999996664456 8888888 899887777776 754
No 91
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=97.87 E-value=1.6e-05 Score=82.01 Aligned_cols=59 Identities=27% Similarity=0.387 Sum_probs=48.6
Q ss_pred CCCCCCchhhhhHHhhhhhcCCCcEEEEEEcCCccCccchHHHHHHHHHHcCCCEEEEEecCC-ccc
Q 021087 237 SPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNNF-EAM 302 (317)
Q Consensus 237 g~lGtqlp~AvG~A~A~kl~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~lPvVFV~eNNg-yAI 302 (317)
+++|.++|.|+|+++|.. ++.|||+.|||+....- . .|..|+.+++|+++||-||+ |.+
T Consensus 421 g~mG~glpaaiGa~la~p----~~~vv~i~GDG~f~m~~--~-eL~Ta~r~~l~v~ivV~NN~~yg~ 480 (574)
T PRK07979 421 GTMGFGLPAALGVKMALP----EETVVCVTGDGSIQMNI--Q-ELSTALQYELPVLVLNLNNRYLGM 480 (574)
T ss_pred cchhhHHHHHHHHHHhCC----CCeEEEEEcchhhhccH--H-HHHHHHHhCCCeEEEEEeCchhhH
Confidence 778888888888888853 56799999999998773 2 59999999999877777777 765
No 92
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=97.86 E-value=1e-05 Score=82.69 Aligned_cols=60 Identities=18% Similarity=0.190 Sum_probs=46.9
Q ss_pred CCCCCCCchhhhhHHhhhhhcCCCcEEEEEEcCCccCccchHHHHHHHHHHcCCCEEEEEecC-Cccc
Q 021087 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNN-FEAM 302 (317)
Q Consensus 236 sg~lGtqlp~AvG~A~A~kl~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~lPvVFV~eNN-gyAI 302 (317)
.+.+|..+|.|+|+++|. .++.|||+.|||+....- .| |..|+.+++|+++||-|| +|++
T Consensus 403 ~g~mG~glpaaiGa~la~----p~~~vv~i~GDG~f~m~~-~E--L~Ta~~~~lpi~~vV~NN~~y~~ 463 (539)
T TIGR03393 403 WGSIGYTLPAAFGAQTAC----PNRRVILLIGDGSAQLTI-QE--LGSMLRDKQHPIILVLNNEGYTV 463 (539)
T ss_pred hhhhhhHHHHHHHHHhcC----CCCCeEEEEcCcHHHhHH-HH--HHHHHHcCCCCEEEEEeCCceEE
Confidence 377888888888888775 467799999999998763 44 999999999955555555 5875
No 93
>PLN02470 acetolactate synthase
Probab=97.84 E-value=1.8e-05 Score=81.82 Aligned_cols=60 Identities=25% Similarity=0.300 Sum_probs=48.2
Q ss_pred CCCCCCCchhhhhHHhhhhhcCCCcEEEEEEcCCccCccchHHHHHHHHHHcCCCEEEEEecCC-ccc
Q 021087 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNNF-EAM 302 (317)
Q Consensus 236 sg~lGtqlp~AvG~A~A~kl~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~lPvVFV~eNNg-yAI 302 (317)
.+.+|..+|.|+|+++|.. ++.|||++|||+....- . .|..|..+++|+++||-||+ |++
T Consensus 425 ~g~mG~glpaaiGa~la~p----~~~Vv~i~GDG~f~m~~-~--eL~Ta~~~~l~v~ivV~NN~~yg~ 485 (585)
T PLN02470 425 LGAMGFGLPAAIGAAAANP----DAIVVDIDGDGSFIMNI-Q--ELATIHVENLPVKIMVLNNQHLGM 485 (585)
T ss_pred cccccchHHHHHHHHHhCC----CCcEEEEEccchhhccH-H--HHHHHHHhCCCeEEEEEeCCcchH
Confidence 3778888888888888753 56799999999998874 3 59999999999777666665 654
No 94
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=97.84 E-value=1.9e-05 Score=81.21 Aligned_cols=59 Identities=19% Similarity=0.258 Sum_probs=47.7
Q ss_pred CCCCCCchhhhhHHhhhhhcCCCcEEEEEEcCCccCccchHHHHHHHHHHcCCCEEEEEecCC-ccc
Q 021087 237 SPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNNF-EAM 302 (317)
Q Consensus 237 g~lGtqlp~AvG~A~A~kl~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~lPvVFV~eNNg-yAI 302 (317)
+.+|..+|.|+|+++|. .++-|||++|||+..-.- . .|..|..+++|+++||-||+ |.+
T Consensus 414 g~mG~glpaaiGa~la~----p~~~Vv~i~GDG~f~m~~-~--eL~Ta~~~~l~i~~vV~NN~~y~~ 473 (561)
T PRK06048 414 GTMGYGFPAAIGAKVGK----PDKTVIDIAGDGSFQMNS-Q--ELATAVQNDIPVIVAILNNGYLGM 473 (561)
T ss_pred cccccHHHHHHHHHHhC----CCCcEEEEEeCchhhccH-H--HHHHHHHcCCCeEEEEEECCccHH
Confidence 68888888888888875 366789999999998774 3 59999999999777666665 765
No 95
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=97.83 E-value=1.6e-05 Score=82.04 Aligned_cols=61 Identities=21% Similarity=0.329 Sum_probs=48.2
Q ss_pred CCCCCCCchhhhhHHhhhhhcCCCcEEEEEEcCCccCccchHHHHHHHHHHcCCCEEEEEecCC-cccc
Q 021087 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNNF-EAMV 303 (317)
Q Consensus 236 sg~lGtqlp~AvG~A~A~kl~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~lPvVFV~eNNg-yAIS 303 (317)
.+++|..+|.|+|+++|.. ++-|||++|||+....- . .|..|..+++|+++||-||+ |.+-
T Consensus 417 ~g~mG~glpaaiGa~lA~p----~~~Vv~i~GDG~f~m~~-~--eL~Ta~~~~l~i~~vV~NN~~y~~i 478 (566)
T PRK07282 417 LGTMGFGIPAAIGAKIANP----DKEVILFVGDGGFQMTN-Q--ELAILNIYKVPIKVVMLNNHSLGMV 478 (566)
T ss_pred cccccchhhHhheeheecC----CCcEEEEEcchhhhccH-H--HHHHHHHhCCCeEEEEEeCCCchHH
Confidence 3788888888888887753 66789999999998773 3 49999999999666666665 8763
No 96
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=97.83 E-value=1.7e-05 Score=76.09 Aligned_cols=59 Identities=19% Similarity=0.107 Sum_probs=46.0
Q ss_pred CCCCCCchhhhhHHhhhhhcCCCcEEEEEEcCCc-cCccchHHHHHHHHHHcCCCEEEEEecCC-ccc
Q 021087 237 SPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGG-TSEQLWKPLSSSSVATMAGPLVPIYQNNF-EAM 302 (317)
Q Consensus 237 g~lGtqlp~AvG~A~A~kl~g~~~vvv~~~GDGa-tseGdfhE~ALN~Aa~~~lPvVFV~eNNg-yAI 302 (317)
+.+|-.+|.|+|+++|. .++.|||+.|||+ ...|- . .|-.|+.+++|+++||-||+ |++
T Consensus 69 g~mG~alpaAiGaklA~----Pd~~VV~i~GDG~~f~mg~-~--eL~tA~r~nl~i~vIV~NN~~yGm 129 (286)
T PRK11867 69 TIHGRALAIATGLKLAN----PDLTVIVVTGDGDALAIGG-N--HFIHALRRNIDITYILFNNQIYGL 129 (286)
T ss_pred hhhhcHHHHHHHHHHhC----CCCcEEEEeCccHHHhCCH-H--HHHHHHHhCCCcEEEEEeCHHHhh
Confidence 56788888888887774 4778999999995 66663 3 48889999999777777776 765
No 97
>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]
Probab=97.83 E-value=1.7e-05 Score=81.35 Aligned_cols=69 Identities=19% Similarity=0.281 Sum_probs=55.3
Q ss_pred cccCCCCCCCchhhhhHHhhhhhcCCCcEEEEEEcCCccCccchHHHHHHHHHHcCC-CEEEEEecCCccccccccc
Q 021087 233 ITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLSSSSVATMAG-PLVPIYQNNFEAMVLLLRV 308 (317)
Q Consensus 233 ~~~sg~lGtqlp~AvG~A~A~kl~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~l-PvVFV~eNNgyAIStP~~~ 308 (317)
.+--|+||-.+|.|.|+++|.+ ++.++.|+||||.+.-. .| +..--.|++ |+|||++|+||-|.--.+.
T Consensus 407 Q~lWGSIG~t~pAalGa~~A~~----drR~IL~iGDGs~QlTv-QE--iStmiR~gl~p~ifvlNN~GYTIEr~IHg 476 (557)
T COG3961 407 QPLWGSIGYTLPAALGAALAAP----DRRVILFIGDGSLQLTV-QE--ISTMIRWGLKPIIFVLNNDGYTIERAIHG 476 (557)
T ss_pred ccchhhcccccHhhhhhhhcCC----CccEEEEEcCchhhhhH-HH--HHHHHHcCCCcEEEEEcCCCcEEEehhcC
Confidence 3455788888888888888877 68899999999997653 34 777889999 6999999999988754433
No 98
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=97.83 E-value=2.2e-05 Score=80.23 Aligned_cols=60 Identities=23% Similarity=0.249 Sum_probs=47.8
Q ss_pred CCCCCCCchhhhhHHhhhhhcCCCcEEEEEEcCCccCccchHHHHHHHHHHcCCCEEEEEecCC-ccc
Q 021087 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNNF-EAM 302 (317)
Q Consensus 236 sg~lGtqlp~AvG~A~A~kl~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~lPvVFV~eNNg-yAI 302 (317)
.+.+|..+|.|+|+++|.+ ++.|||+.|||+.... ..| |..|+.+++|+++||-||+ |.+
T Consensus 407 ~g~mG~~lpaaiGa~la~~----~~~vv~i~GDGsf~m~-~~e--L~Ta~~~~lpi~ivV~NN~~y~~ 467 (539)
T TIGR02418 407 MQTLGVALPWAIGAALVRP----NTKVVSVSGDGGFLFS-SME--LETAVRLKLNIVHIIWNDNGYNM 467 (539)
T ss_pred ccccccHHHHHHHHHHhCC----CCcEEEEEcchhhhch-HHH--HHHHHHhCCCeEEEEEECCcchH
Confidence 3688899999999888754 6679999999999876 345 8999999999666665554 875
No 99
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=97.82 E-value=2.2e-05 Score=81.25 Aligned_cols=60 Identities=15% Similarity=0.184 Sum_probs=48.6
Q ss_pred CCCCCCCchhhhhHHhhhhhcCCCcEEEEEEcCCccCccchHHHHHHHHHHcCCCEEEEEecC-Cccc
Q 021087 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNN-FEAM 302 (317)
Q Consensus 236 sg~lGtqlp~AvG~A~A~kl~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~lPvVFV~eNN-gyAI 302 (317)
.+.+|.++|.|+|+++|.+ ++.|||++|||+...+ ..| |-.|+.+++|+++||-|| +|++
T Consensus 434 ~g~mG~glp~aiGa~la~p----~r~vv~i~GDG~f~~~-~~e--l~Ta~~~~lpv~ivV~NN~~y~~ 494 (588)
T PRK07525 434 FGNCGYAFPAIIGAKIACP----DRPVVGFAGDGAWGIS-MNE--VMTAVRHNWPVTAVVFRNYQWGA 494 (588)
T ss_pred ccccccHHHHHHHHHHhCC----CCcEEEEEcCchHhcc-HHH--HHHHHHhCCCeEEEEEeCchhHH
Confidence 4778888888888888754 6779999999999887 455 889999999977777555 5875
No 100
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=97.81 E-value=2.4e-05 Score=80.90 Aligned_cols=61 Identities=16% Similarity=0.264 Sum_probs=47.3
Q ss_pred CCCCCCCchhhhhHHhhhhhcCCCcEEEEEEcCCccCccchHHHHHHHHHHcCCCEEEE-EecCCcccc
Q 021087 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLSSSSVATMAGPLVPI-YQNNFEAMV 303 (317)
Q Consensus 236 sg~lGtqlp~AvG~A~A~kl~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~lPvVFV-~eNNgyAIS 303 (317)
.+.+|..+|.|+|+++|. .++.||+++|||+.... .. .|..|+.+++|+++| ++||+|++.
T Consensus 407 ~gsmG~glpaAiGa~la~----p~r~Vv~i~GDGsf~m~-~~--eL~Tavr~~lpi~~VV~NN~~yg~i 468 (575)
T TIGR02720 407 FATMGVGVPGAIAAKLNY----PDRQVFNLAGDGAFSMT-MQ--DLLTQVQYHLPVINIVFSNCTYGFI 468 (575)
T ss_pred cchhhchHHHHHHHHHhC----CCCcEEEEEcccHHHhh-HH--HHHHHHHhCCCeEEEEEeCCccHHH
Confidence 377888887777777764 46789999999999886 34 599999999997666 555558853
No 101
>PRK08611 pyruvate oxidase; Provisional
Probab=97.81 E-value=1.9e-05 Score=81.65 Aligned_cols=61 Identities=26% Similarity=0.346 Sum_probs=47.4
Q ss_pred CCCCCCCchhhhhHHhhhhhcCCCcEEEEEEcCCccCccchHHHHHHHHHHcCCCEEEEEecC-Ccccc
Q 021087 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNN-FEAMV 303 (317)
Q Consensus 236 sg~lGtqlp~AvG~A~A~kl~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~lPvVFV~eNN-gyAIS 303 (317)
.+.+|.++|.|+|+++|. .++-|||++|||+.... .. .|..|+.+++|+|+||-|| +|++-
T Consensus 407 ~g~mG~glpaaiGa~la~----p~~~Vv~i~GDGsf~m~-~~--eL~Ta~r~~l~~iivV~NN~~~g~i 468 (576)
T PRK08611 407 LGTMGCGLPGAIAAKIAF----PDRQAIAICGDGGFSMV-MQ--DFVTAVKYKLPIVVVVLNNQQLAFI 468 (576)
T ss_pred chhhhhhHHHHHHHHHhC----CCCcEEEEEcccHHhhh-HH--HHHHHHHhCCCeEEEEEeCCcchHH
Confidence 377888888888888875 35679999999999887 34 5999999999966555555 48753
No 102
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional
Probab=97.81 E-value=3.9e-05 Score=74.28 Aligned_cols=71 Identities=23% Similarity=0.199 Sum_probs=61.9
Q ss_pred CCcccccCCCCCCCchhhhhHHhhhhhcCCCcEEEEEEcCCccCccchHHHHHHHHHHcCCCEEEEEecCC-cc
Q 021087 229 KLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNNF-EA 301 (317)
Q Consensus 229 ~~~i~~~sg~lGtqlp~AvG~A~A~kl~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~lPvVFV~eNNg-yA 301 (317)
..++..+.+..|.+.+.|.|++.|.+..+++..|||+.|||++..--+ + +|..|+..+.++++||-||+ |+
T Consensus 61 ~~~~~~~~~~fg~~~a~a~Gi~~a~~~~~~~~~Vv~~~GDG~~~dIG~-~-~L~~a~~r~~ni~~ivlDNe~Y~ 132 (299)
T PRK11865 61 AWNVPWIHVAFENAAAVASGIERAVKALGKKVNVVAIGGDGGTADIGF-Q-SLSGAMERGHNILYLMYDNEAYM 132 (299)
T ss_pred ccccccchhhhcchHHHHHHHHHHHHHhcCCCeEEEEeCCchHhhccH-H-HHHHHHHcCCCeEEEEECCcccc
Confidence 456677889999999999999999988777788999999998866555 6 89999999999999999998 54
No 103
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=97.81 E-value=2.5e-05 Score=80.53 Aligned_cols=59 Identities=29% Similarity=0.410 Sum_probs=47.9
Q ss_pred CCCCCCchhhhhHHhhhhhcCCCcEEEEEEcCCccCccchHHHHHHHHHHcCCCEEEEEecCC-ccc
Q 021087 237 SPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNNF-EAM 302 (317)
Q Consensus 237 g~lGtqlp~AvG~A~A~kl~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~lPvVFV~eNNg-yAI 302 (317)
+.+|..+|.|+|+++|.. ++-|||++|||+....- . .|..|..+++|+++||-||+ |.+
T Consensus 421 g~mG~glpaaiGa~la~p----~~~vv~i~GDG~f~m~~-~--EL~Ta~r~~lpv~~vV~NN~~y~~ 480 (572)
T PRK08979 421 GTMGFGLPAAMGVKFAMP----DETVVCVTGDGSIQMNI-Q--ELSTALQYDIPVKIINLNNRFLGM 480 (572)
T ss_pred ccccchhhHHHhhhhhCC----CCeEEEEEcchHhhccH-H--HHHHHHHcCCCeEEEEEeCCccHH
Confidence 678888888888888753 66799999999998773 4 49999999999777777766 665
No 104
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=97.80 E-value=2.4e-05 Score=80.46 Aligned_cols=61 Identities=20% Similarity=0.263 Sum_probs=49.1
Q ss_pred CCCCCCCchhhhhHHhhhhhcCCCcEEEEEEcCCccCccchHHHHHHHHHHcCCCEEEEEecCC-cccc
Q 021087 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNNF-EAMV 303 (317)
Q Consensus 236 sg~lGtqlp~AvG~A~A~kl~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~lPvVFV~eNNg-yAIS 303 (317)
.+.+|..+|.|+|+++|.+ ++.|||+.|||+..-.- . .|..|..+++|+++||-||+ |++.
T Consensus 420 ~g~mG~glpaAiGa~la~p----~~~vv~i~GDG~f~m~~-~--eL~Ta~~~~l~i~ivV~NN~~yg~i 481 (572)
T PRK06456 420 MGTMGFGLPAAMGAKLARP----DKVVVDLDGDGSFLMTG-T--NLATAVDEHIPVISVIFDNRTLGLV 481 (572)
T ss_pred cccccchhHHHHHHHHhCC----CCeEEEEEccchHhcch-H--HHHHHHHhCCCeEEEEEECCchHHH
Confidence 3788888888888888753 67799999999998774 4 49999999999777666666 8764
No 105
>COG2609 AceE Pyruvate dehydrogenase complex, dehydrogenase (E1) component [Energy production and conversion]
Probab=97.80 E-value=0.00098 Score=70.81 Aligned_cols=175 Identities=17% Similarity=0.170 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC-cccccccCCch--HHHHHHHHhccCCC------CeeecC-CchHHH---HHH
Q 021087 130 EVAVKMYSHMVTLQVMDSVLYEAQRQG-RFSFYLTTIGE--EAINIGSAAALSAD------DFILPQ-YREPGV---LLW 196 (317)
Q Consensus 130 e~l~~lYr~M~~~R~~D~~~~~lqrqG-rigfy~~~~Gq--EA~~VG~a~AL~~~------D~v~~~-YR~~g~---~l~ 196 (317)
.++.+-+|..++-..+ ....+.+|.| ++|-.+.+.-- .---||.-..+++. |.||-+ |=..|+ ...
T Consensus 75 ~~lErrir~~irWna~-a~vlRaskk~l~lGGH~aSfaSsatlyev~fnhffr~~~~~~ggDlV~~qgHaSPg~yArafL 153 (887)
T COG2609 75 LELERRIRSLIRWNAH-AMVLRASKKGLELGGHIASFASSATLYEVGFNHFFRAKSEKDGGDLVFFQGHASPGIYARAFL 153 (887)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHccCCCCCccchhhhhhhHHHHHHHHHHHHhcCcCCCCCCceEEEecCCCchHHHHHHH
Confidence 3455556666555555 2333444443 34333332211 23356777778765 988875 444332 233
Q ss_pred hCCCHHHHHHHHhhCCCCCCCCCCCCcccCCCCCcc-cccCCCCCCCchhhhhHHhhhhh-------cCCCcEEEEEEcC
Q 021087 197 RGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNY-ITISSPIATQLPQAVGVAYSLKM-------EKKDACAVAYTGD 268 (317)
Q Consensus 197 rG~~l~~~~~q~~G~~~g~~kGr~mp~H~~s~~~~i-~~~sg~lGtqlp~AvG~A~A~kl-------~g~~~vvv~~~GD 268 (317)
-|.--++-|..+..-. + ++|-+---|.- +...+ ...++++|=+...|+=-|.-+|+ +..++.|+||+||
T Consensus 154 eGRlseeqLdnFRqev-~-g~gl~SYPhp~-lmpdfwqFpTvSmGLGp~~aiyqArf~kYL~~RGl~~~~~~~v~afLGD 230 (887)
T COG2609 154 EGRLTEEQLDNFRQEV-D-GKGLSSYPHPK-LMPDFWQFPTVSMGLGPIQAIYQARFLKYLEARGLKDTSDQKVWAFLGD 230 (887)
T ss_pred hccccHHHHHHHHHhc-c-CCCCCCCCCCc-CCccccccCcccccccHHHHHHHHHHHHHHHhcCCcCCCCCeEEEEecC
Confidence 4544444555443322 2 23322212321 11122 23445666666666655655554 2367899999999
Q ss_pred CccCccchHHHHHHHHHHcCC-CEEEEEecCCcccccccccc
Q 021087 269 GGTSEQLWKPLSSSSVATMAG-PLVPIYQNNFEAMVLLLRVV 309 (317)
Q Consensus 269 GatseGdfhE~ALN~Aa~~~l-PvVFV~eNNgyAIStP~~~~ 309 (317)
|++.|+.-.+ |+.+|+..+| ++||||+-|.-....|+..-
T Consensus 231 gEmDEpes~g-Ai~~A~re~LdNlifVincNlQrLDgpVrgn 271 (887)
T COG2609 231 GEMDEPESRG-AITEAAREKLDNLIFVINCNLQRLDGPVRGN 271 (887)
T ss_pred cccCCchhhH-HHHHHHHhcCCceEEEEecchhhcCCcccCC
Confidence 9999999999 9999999999 59999999999999997653
No 106
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=97.79 E-value=2.3e-05 Score=80.39 Aligned_cols=62 Identities=19% Similarity=0.379 Sum_probs=48.2
Q ss_pred CCCCCCCchhhhhHHhhhhhcCCCcEEEEEEcCCccCccchHHHHHHHHHHcCCCEEEEEecCC-cccc
Q 021087 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNNF-EAMV 303 (317)
Q Consensus 236 sg~lGtqlp~AvG~A~A~kl~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~lPvVFV~eNNg-yAIS 303 (317)
.+.+|..+|.|+|+++|.+ +++-|||+.|||+....- . .|..|+.+++|+++||-||+ |++-
T Consensus 395 ~g~mG~glpaaiGa~la~p---~~~~Vv~i~GDGsf~~~~-~--eL~Ta~~~~lpi~ivV~NN~~~g~i 457 (549)
T PRK06457 395 LGSMGIGVPGSVGASFAVE---NKRQVISFVGDGGFTMTM-M--ELITAKKYDLPVKIIIYNNSKLGMI 457 (549)
T ss_pred cchhhhhHHHHHHHHhcCC---CCCeEEEEEcccHHhhhH-H--HHHHHHHHCCCeEEEEEECCccchH
Confidence 4788888888888888753 156799999999997763 3 59999999999666655555 8753
No 107
>PRK08322 acetolactate synthase; Reviewed
Probab=97.78 E-value=3e-05 Score=79.13 Aligned_cols=61 Identities=23% Similarity=0.329 Sum_probs=47.1
Q ss_pred CCCCCCCchhhhhHHhhhhhcCCCcEEEEEEcCCccCccchHHHHHHHHHHcCCCEEEEEecC-Ccccc
Q 021087 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNN-FEAMV 303 (317)
Q Consensus 236 sg~lGtqlp~AvG~A~A~kl~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~lPvVFV~eNN-gyAIS 303 (317)
.+.+|..+|.|+|+++|. .++.|+|++|||+..-.- . .|..|..+++|+++||-|| +|++-
T Consensus 405 ~g~mG~~lpaaiGa~la~----p~~~vv~i~GDGsf~m~~-~--eL~Ta~~~~lpv~iiV~NN~~~g~~ 466 (547)
T PRK08322 405 LATMGAGLPSAIAAKLVH----PDRKVLAVCGDGGFMMNS-Q--ELETAVRLGLPLVVLILNDNAYGMI 466 (547)
T ss_pred cccccchhHHHHHHHHhC----CCCcEEEEEcchhHhccH-H--HHHHHHHhCCCeEEEEEeCCCcchH
Confidence 368899888888888875 366799999999998552 3 5888999999966655555 58753
No 108
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=97.78 E-value=2.4e-05 Score=80.07 Aligned_cols=60 Identities=20% Similarity=0.321 Sum_probs=47.6
Q ss_pred CCCCCCchhhhhHHhhhhhcCCCcEEEEEEcCCccCccchHHHHHHHHHHcCCCEEEEEecCC-cccc
Q 021087 237 SPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNNF-EAMV 303 (317)
Q Consensus 237 g~lGtqlp~AvG~A~A~kl~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~lPvVFV~eNNg-yAIS 303 (317)
+++|..+|.|+|+++|. .++.|||++|||+....- . .|..|..+++|+++||-||+ |.+-
T Consensus 401 g~mG~glpaAiGa~la~----p~~~vv~i~GDG~f~~~~-~--eL~ta~~~~l~v~ivV~NN~~~~~~ 461 (548)
T PRK08978 401 GTMGFGLPAAIGAQVAR----PDDTVICVSGDGSFMMNV-Q--ELGTIKRKQLPVKIVLLDNQRLGMV 461 (548)
T ss_pred hhhhchHHHHHHHHHhC----CCCcEEEEEccchhhccH-H--HHHHHHHhCCCeEEEEEeCCccHHH
Confidence 77888888888888875 366789999999998773 3 59999999999666665555 7653
No 109
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=97.77 E-value=4.4e-05 Score=78.64 Aligned_cols=56 Identities=16% Similarity=0.083 Sum_probs=48.1
Q ss_pred CCCCCCCchhhhhHHhhhhhcCCCcEEEEEEcCCccCccchHHHHHHHHHHcCCCEEEEEecCC
Q 021087 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNNF 299 (317)
Q Consensus 236 sg~lGtqlp~AvG~A~A~kl~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~lPvVFV~eNNg 299 (317)
.+.+|..+|.|+|+++|. ++-|||+.|||+..-.- .| |..|+.+++|+++||-||+
T Consensus 423 ~gsmG~glpaaiGa~la~-----~~~vv~i~GDG~f~m~~-~E--L~Ta~r~~lpi~~vV~NN~ 478 (569)
T PRK09259 423 WGVMGIGMGYAIAAAVET-----GKPVVAIEGDSAFGFSG-ME--VETICRYNLPVTVVIFNNG 478 (569)
T ss_pred CccccccHHHHHHHHhcC-----CCcEEEEecCccccccH-HH--HHHHHHcCCCEEEEEEeCh
Confidence 388999999999999882 56699999999998773 44 9999999999888888887
No 110
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=97.77 E-value=4.2e-05 Score=79.70 Aligned_cols=65 Identities=14% Similarity=0.093 Sum_probs=49.9
Q ss_pred cccCCCCCCCchhhhhHHhhhhhcCCCcEEEEEEcCCccCccchHHHHHHHHHHcCCCEEEEEecCC-cccc
Q 021087 233 ITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNNF-EAMV 303 (317)
Q Consensus 233 ~~~sg~lGtqlp~AvG~A~A~kl~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~lPvVFV~eNNg-yAIS 303 (317)
....+.+|.++|.|+|+++|. .++.||+++|||+.......| |..|..+++|+++||-||+ |++.
T Consensus 399 ~~~~~~mG~~~~~AiGa~~a~----p~~~Vv~i~GDG~f~~~g~~e--L~tav~~~~~i~~vVlnN~~~g~~ 464 (595)
T TIGR03336 399 VDTTLCMGASIGVASGLSKAG----EKQRIVAFIGDSTFFHTGIPG--LINAVYNKANITVVILDNRITAMT 464 (595)
T ss_pred cceeeccCchHHHHhhhhhcC----CCCCEEEEeccchhhhcCHHH--HHHHHHcCCCeEEEEEcCcceecc
Confidence 334577888888888887774 356799999999998655556 8889999999777777665 8764
No 111
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=97.76 E-value=2e-05 Score=80.89 Aligned_cols=60 Identities=15% Similarity=0.147 Sum_probs=47.0
Q ss_pred CCCCCCCchhhhhHHhhhhhcCCCcEEEEEEcCCccCccchHHHHHHHHHHcCCCEEEEEecCC-cccc
Q 021087 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNNF-EAMV 303 (317)
Q Consensus 236 sg~lGtqlp~AvG~A~A~kl~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~lPvVFV~eNNg-yAIS 303 (317)
-+.+|..+|.|+|+++|. .+++ |+++|||+.... ..| |..|+.+++|+++||-||+ |.+-
T Consensus 402 ~g~mG~glpaaiGa~lA~----~~r~-v~i~GDG~f~m~-~~E--L~Ta~r~~lpv~~vV~NN~~y~~~ 462 (535)
T TIGR03394 402 YAGMGFGVPAGIGAQCTS----GKRI-LTLVGDGAFQMT-GWE--LGNCRRLGIDPIVILFNNASWEML 462 (535)
T ss_pred cchhhhHHHHHHHHHhCC----CCCe-EEEEeChHHHhH-HHH--HHHHHHcCCCcEEEEEECCcccee
Confidence 378999999999999984 2444 779999999776 345 9999999999666666655 8764
No 112
>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed
Probab=97.76 E-value=2.7e-05 Score=74.46 Aligned_cols=60 Identities=18% Similarity=0.155 Sum_probs=44.5
Q ss_pred CCCCCCchhhhhHHhhhhhcCCCcEEEEEEcCCccCccchHHHHHHHHHHcCCCEEEEEecCC-ccc
Q 021087 237 SPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNNF-EAM 302 (317)
Q Consensus 237 g~lGtqlp~AvG~A~A~kl~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~lPvVFV~eNNg-yAI 302 (317)
++.|-.+|.|+|+++|. .++.|||+.|||+... ..++.+-.|+.+++||++||-||+ |++
T Consensus 68 ~~~G~alPaAiGaklA~----Pdr~VV~i~GDG~f~~--~g~~el~ta~r~nlpi~iIV~NN~~yGm 128 (277)
T PRK09628 68 TTHGRAVAYATGIKLAN----PDKHVIVVSGDGDGLA--IGGNHTIHGCRRNIDLNFILINNFIYGL 128 (277)
T ss_pred eccccHHHHHHHHHHHC----CCCeEEEEECchHHHH--hhHHHHHHHHHhCcCeEEEEEEChHHhc
Confidence 35677788888877775 4788999999999632 223235569999999888877776 775
No 113
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=97.74 E-value=3.9e-05 Score=79.51 Aligned_cols=59 Identities=25% Similarity=0.329 Sum_probs=48.4
Q ss_pred CCCCCCchhhhhHHhhhhhcCCCcEEEEEEcCCccCccchHHHHHHHHHHcCCCEEEEEecCC-ccc
Q 021087 237 SPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNNF-EAM 302 (317)
Q Consensus 237 g~lGtqlp~AvG~A~A~kl~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~lPvVFV~eNNg-yAI 302 (317)
+++|..+|.|+|+++|. .++.|||++|||+....- - .|..|..+++|+|+||-||+ |.+
T Consensus 437 gsmG~glpaaiGa~lA~----p~r~Vv~i~GDGsf~m~~-~--eL~Ta~r~~lpviivV~NN~~~~~ 496 (587)
T PRK06965 437 GTMGVGLPYAMGIKMAH----PDDDVVCITGEGSIQMCI-Q--ELSTCLQYDTPVKIISLNNRYLGM 496 (587)
T ss_pred ccccchHHHHHHHHHhC----CCCcEEEEEcchhhhcCH-H--HHHHHHHcCCCeEEEEEECCcchH
Confidence 67888888888888885 367799999999998773 3 59999999999877777777 654
No 114
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=97.73 E-value=2.4e-05 Score=80.32 Aligned_cols=58 Identities=28% Similarity=0.263 Sum_probs=45.7
Q ss_pred CCCCCCchhhhhHHhhhhhcCCCcEEEEEEcCCccCccchHHHHHHHHHHcCCCEEEEEecCC-ccc
Q 021087 237 SPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNNF-EAM 302 (317)
Q Consensus 237 g~lGtqlp~AvG~A~A~kl~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~lPvVFV~eNNg-yAI 302 (317)
+.+|..+|.|+|+++| . ++.|||+.|||+..... . .|..|+.+++|+++||-||+ |+|
T Consensus 425 ~~~G~~lpaaiGaala-~----~~~vv~i~GDGsf~~~~-~--eL~Ta~r~~l~i~ivVlNN~g~~~ 483 (568)
T PRK07449 425 SGIDGLLSTAAGVARA-S----AKPTVALIGDLSFLHDL-N--GLLLLKQVPAPLTIVVVNNNGGGI 483 (568)
T ss_pred cchhhHHHHHHHHHhc-C----CCCEEEEechHHhhcCc-H--HHHhhcccCCCeEEEEEECCCCcc
Confidence 5688889999999888 3 55689999999999753 3 48889999999666666665 775
No 115
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=97.73 E-value=3.8e-05 Score=80.04 Aligned_cols=60 Identities=20% Similarity=0.252 Sum_probs=48.5
Q ss_pred CCCCCCCchhhhhHHhhhhhcCCCcEEEEEEcCCccCccchHHHHHHHHHHcCCCEEEEEecCC-ccc
Q 021087 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNNF-EAM 302 (317)
Q Consensus 236 sg~lGtqlp~AvG~A~A~kl~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~lPvVFV~eNNg-yAI 302 (317)
.+.+|.++|.|+|+++|.. ++.|||+.|||+..-. ..| |..|+.+++|+|+||-||+ |.+
T Consensus 433 ~g~mG~glpaAiGA~lA~p----~r~Vv~i~GDG~f~m~-~~e--L~Ta~r~~lpvi~vV~NN~~~g~ 493 (616)
T PRK07418 433 LGTMGFGMPAAMGVKVALP----DEEVICIAGDASFLMN-IQE--LGTLAQYGINVKTVIINNGWQGM 493 (616)
T ss_pred ccccccHHHHHHHHHHhCC----CCcEEEEEcchHhhhh-HHH--HHHHHHhCCCeEEEEEECCcchH
Confidence 3778888888888887753 6779999999999865 455 9999999999888877777 664
No 116
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=97.72 E-value=3.9e-05 Score=79.20 Aligned_cols=59 Identities=19% Similarity=0.250 Sum_probs=47.2
Q ss_pred CCCCCCchhhhhHHhhhhhcCCCcEEEEEEcCCccCccchHHHHHHHHHHcCCCEEEEEecCC-ccc
Q 021087 237 SPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNNF-EAM 302 (317)
Q Consensus 237 g~lGtqlp~AvG~A~A~kl~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~lPvVFV~eNNg-yAI 302 (317)
+.+|..+|.|+|+++|. .++.|||++|||+....- . .|..|..+++|+|+||-||+ |.+
T Consensus 430 g~mG~~lpaaiGa~la~----p~~~Vv~i~GDG~f~m~~-~--eL~Tavr~~lpvi~vV~NN~~yg~ 489 (579)
T TIGR03457 430 GNCGYAFPTIIGAKIAA----PDRPVVAYAGDGAWGMSM-N--EIMTAVRHDIPVTAVVFRNRQWGA 489 (579)
T ss_pred ccccchHHHHHhhhhhC----CCCcEEEEEcchHHhccH-H--HHHHHHHhCCCeEEEEEECcchHH
Confidence 67888888888888774 367799999999998863 4 49999999999776666665 875
No 117
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=97.71 E-value=6.2e-05 Score=77.23 Aligned_cols=56 Identities=16% Similarity=0.087 Sum_probs=47.6
Q ss_pred CCCCCCCchhhhhHHhhhhhcCCCcEEEEEEcCCccCccchHHHHHHHHHHcCCCEEEEEecCC
Q 021087 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNNF 299 (317)
Q Consensus 236 sg~lGtqlp~AvG~A~A~kl~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~lPvVFV~eNNg 299 (317)
.+.+|..+|.|+|+++|. ++.||++.|||+....- .| |-.|+.+++|+++||-||+
T Consensus 416 ~gsmG~~lpaaiGaala~-----~~~vv~i~GDGsf~m~~-~E--L~Ta~r~~l~v~~vV~NN~ 471 (554)
T TIGR03254 416 WGVMGIGMGYAIAAAVET-----GKPVVALEGDSAFGFSG-ME--VETICRYNLPVCVVIFNNG 471 (554)
T ss_pred CCcCCchHHHHHHHHhcC-----CCcEEEEEcCchhcccH-HH--HHHHHHcCCCEEEEEEeCh
Confidence 378999999999999872 56799999999998773 44 9999999999888888886
No 118
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=97.71 E-value=4.4e-05 Score=73.23 Aligned_cols=60 Identities=15% Similarity=0.137 Sum_probs=47.0
Q ss_pred CCCCCCchhhhhHHhhhhhcCCCcEEEEEEcCCccCccchHHHHHHHHHHcCCCEEEEEecCC-ccc
Q 021087 237 SPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNNF-EAM 302 (317)
Q Consensus 237 g~lGtqlp~AvG~A~A~kl~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~lPvVFV~eNNg-yAI 302 (317)
+.+|-.+|.|+|+.+| +.++.|||+.|||++.---+.| |..|+.+++|+++||-||+ |+.
T Consensus 60 ~~mG~alp~AiGaklA----~pd~~VVai~GDG~~~~iG~~e--L~tA~r~nl~i~~IV~NN~~Yg~ 120 (280)
T PRK11869 60 TLHGRAIPAATAVKAT----NPELTVIAEGGDGDMYAEGGNH--LIHAIRRNPDITVLVHNNQVYGL 120 (280)
T ss_pred cccccHHHHHHHHHHH----CCCCcEEEEECchHHhhCcHHH--HHHHHHhCcCcEEEEEECHHHhh
Confidence 4478888888888666 4467899999999965322445 9999999999888888887 764
No 119
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=97.71 E-value=3.7e-05 Score=73.65 Aligned_cols=60 Identities=25% Similarity=0.285 Sum_probs=48.2
Q ss_pred CCCCCCCchhhhhHHhhhhhcCCCcEEEEEEcCC-ccCccchHHHHHHHHHHcCCCEEEEEecCC-ccc
Q 021087 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDG-GTSEQLWKPLSSSSVATMAGPLVPIYQNNF-EAM 302 (317)
Q Consensus 236 sg~lGtqlp~AvG~A~A~kl~g~~~vvv~~~GDG-atseGdfhE~ALN~Aa~~~lPvVFV~eNNg-yAI 302 (317)
.+..|..+|.|+|+++|.. +..||++.||| +...|- . .|-.|+.+++|+++||-||+ |+.
T Consensus 58 ~~~~G~alp~A~GaklA~P----d~~VV~i~GDG~~f~ig~--~-eL~tA~rrn~~i~vIV~nN~~ygm 119 (279)
T PRK11866 58 HGIHGRVLPIATGVKWANP----KLTVIGYGGDGDGYGIGL--G-HLPHAARRNVDITYIVSNNQVYGL 119 (279)
T ss_pred ccccccHHHHHHHHHHHCC----CCcEEEEECChHHHHccH--H-HHHHHHHHCcCcEEEEEEChhhhh
Confidence 4667888888888888743 67799999999 677773 3 58899999999888888886 655
No 120
>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors.
Probab=97.69 E-value=2.2e-05 Score=73.00 Aligned_cols=65 Identities=17% Similarity=0.121 Sum_probs=47.2
Q ss_pred cCCCCCCCchhhhhHHhhhh-hcCCCcEEEEEEcCCccC-ccchHHHHHHHHHHcCCCEEEEEecCC-ccc
Q 021087 235 ISSPIATQLPQAVGVAYSLK-MEKKDACAVAYTGDGGTS-EQLWKPLSSSSVATMAGPLVPIYQNNF-EAM 302 (317)
Q Consensus 235 ~sg~lGtqlp~AvG~A~A~k-l~g~~~vvv~~~GDGats-eGdfhE~ALN~Aa~~~lPvVFV~eNNg-yAI 302 (317)
..+.+|.++|.|+|+++|.- ....++.|||+.|||++- .| |.| +..+..+++|+++||-||+ |+.
T Consensus 62 ~~g~mG~GlpaAiGA~~a~~~~~~p~~~Vv~i~GDG~~~~~g-~~~--l~ta~~~~l~i~ivVlNN~~yg~ 129 (237)
T cd02018 62 DANAVASGLKRGLKARFPKDRELDKKKDVVVIGGDGATYDIG-FGA--LSHSLFRGEDITVIVLDNEVYSN 129 (237)
T ss_pred CHHHHHHHHHHHHHhhcccccccCCCCcEEEEeCchHHHhcc-HHH--HHHHHHcCCCeEEEEECCccccC
Confidence 34888999999999887711 113477899999999864 33 445 5556779999888887777 663
No 121
>PRK08617 acetolactate synthase; Reviewed
Probab=97.69 E-value=4.9e-05 Score=77.88 Aligned_cols=60 Identities=22% Similarity=0.202 Sum_probs=47.1
Q ss_pred CCCCCCCchhhhhHHhhhhhcCCCcEEEEEEcCCccCccchHHHHHHHHHHcCCCEEEEEecCC-ccc
Q 021087 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNNF-EAM 302 (317)
Q Consensus 236 sg~lGtqlp~AvG~A~A~kl~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~lPvVFV~eNNg-yAI 302 (317)
.+.+|..+|.|+|+++|. .++.|+|++|||+....- . .|..|+.+++|+++||-||+ |.+
T Consensus 413 ~g~mG~~lpaaiGa~la~----p~~~vv~i~GDGsf~m~~-~--eL~Ta~~~~lpv~~vV~NN~~~~~ 473 (552)
T PRK08617 413 MQTLGVALPWAIAAALVR----PGKKVVSVSGDGGFLFSA-M--ELETAVRLKLNIVHIIWNDGHYNM 473 (552)
T ss_pred cccccccccHHHhhHhhc----CCCcEEEEEechHHhhhH-H--HHHHHHHhCCCeEEEEEECCccch
Confidence 367888888888888764 467799999999998764 4 49999999999776666665 765
No 122
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.
Probab=97.68 E-value=5.2e-05 Score=72.97 Aligned_cols=60 Identities=15% Similarity=0.143 Sum_probs=44.6
Q ss_pred CCCCCCchhhhhHHhhhhhcCCCcEEEEEEcCCcc-CccchHHHHHHHHHHcCCCEEEEEecCC-cccc
Q 021087 237 SPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGT-SEQLWKPLSSSSVATMAGPLVPIYQNNF-EAMV 303 (317)
Q Consensus 237 g~lGtqlp~AvG~A~A~kl~g~~~vvv~~~GDGat-seGdfhE~ALN~Aa~~~lPvVFV~eNNg-yAIS 303 (317)
+..|-.+|.|+|+++| ..++.|||+.|||+. ..|- . .|-.|+.+++|+++||-||+ |+.-
T Consensus 53 t~mG~alPaAiGaklA----~Pd~~VVai~GDG~f~~mg~--~-eL~tA~r~nl~I~vIVlNN~~yGmt 114 (287)
T TIGR02177 53 GLHGRALPVATGIKLA----NPHLKVIVVGGDGDLYGIGG--N-HFVAAGRRNVDITVIVHDNQVYGLT 114 (287)
T ss_pred cccccHHHHHHHHHHH----CCCCcEEEEeCchHHHhccH--H-HHHHHHHhCcCeEEEEEECHHHHhh
Confidence 3456777777777666 447889999999995 3552 3 58889999999888888876 6653
No 123
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=97.67 E-value=4.3e-05 Score=79.53 Aligned_cols=59 Identities=22% Similarity=0.181 Sum_probs=46.6
Q ss_pred CCCCCCchhhhhHHhhhhhcCCCcEEEEEEcCCccCccchHHHHHHHHHHcCCCEEEEEecCC-ccc
Q 021087 237 SPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNNF-EAM 302 (317)
Q Consensus 237 g~lGtqlp~AvG~A~A~kl~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~lPvVFV~eNNg-yAI 302 (317)
+++|.++|.|+|+++|.. ++.|+|++|||+....- . .|..|+.+++|+++||-||+ |.+
T Consensus 447 G~mG~glpaaiGa~la~p----~~~Vv~i~GDG~f~m~~--~-eL~Ta~~~~lpv~ivV~NN~~~g~ 506 (612)
T PRK07789 447 GTMGYAVPAAMGAKVGRP----DKEVWAIDGDGCFQMTN--Q-ELATCAIEGIPIKVALINNGNLGM 506 (612)
T ss_pred ccccchhhhHHhhhccCC----CCcEEEEEcchhhhccH--H-HHHHHHHcCCCeEEEEEECCchHH
Confidence 678888888888888753 66799999999998763 2 69999999999666665555 875
No 124
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=97.60 E-value=0.00011 Score=76.19 Aligned_cols=62 Identities=26% Similarity=0.268 Sum_probs=49.9
Q ss_pred cCCCCCCCchhhhhHHhhhhhcCCCcEEEEEEcCCccCccchHHHHHHHHHHcCCCEEEEEecCC-cccc
Q 021087 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNNF-EAMV 303 (317)
Q Consensus 235 ~sg~lGtqlp~AvG~A~A~kl~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~lPvVFV~eNNg-yAIS 303 (317)
..+++|.++|.|+|++++.. ++-|||+.|||+..-. .- .|..|..+++||++||-||+ |.+-
T Consensus 406 ~~GtMG~glPaAIGAkla~P----~r~Vv~i~GDG~F~m~-~q--EL~Ta~r~~lpv~ivv~nN~~~g~v 468 (550)
T COG0028 406 GLGTMGFGLPAAIGAKLAAP----DRKVVAIAGDGGFMMN-GQ--ELETAVRYGLPVKIVVLNNGGYGMV 468 (550)
T ss_pred CCccccchHHHHHHHHhhCC----CCcEEEEEcccHHhcc-HH--HHHHHHHhCCCEEEEEEECCccccc
Confidence 45677777777777777665 7889999999999877 34 49999999999999988888 5543
No 125
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=97.58 E-value=8.2e-05 Score=77.02 Aligned_cols=59 Identities=27% Similarity=0.342 Sum_probs=47.3
Q ss_pred CCCCCCchhhhhHHhhhhhcCCCcEEEEEEcCCccCccchHHHHHHHHHHcCCCEEEEEecCC-ccc
Q 021087 237 SPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNNF-EAM 302 (317)
Q Consensus 237 g~lGtqlp~AvG~A~A~kl~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~lPvVFV~eNNg-yAI 302 (317)
+++|..+|.|+|+++|. .++.|||++|||+..-. .. .|..|+.+++|+++||-||+ |++
T Consensus 419 gsmG~~lpaaiGa~la~----p~~~Vv~i~GDGsf~m~-~~--eL~Ta~~~~lpv~~vV~NN~~~g~ 478 (586)
T PRK06276 419 GTMGFGFPAAIGAKVAK----PDANVIAITGDGGFLMN-SQ--ELATIAEYDIPVVICIFDNRTLGM 478 (586)
T ss_pred cccccchhHHHhhhhhc----CCCcEEEEEcchHhhcc-HH--HHHHHHHhCCCeEEEEEeCCchHH
Confidence 67888888888888874 35568999999999866 34 49999999999777776666 765
No 126
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=97.35 E-value=0.00015 Score=71.71 Aligned_cols=60 Identities=20% Similarity=0.261 Sum_probs=46.7
Q ss_pred CCCCCCCchhhhhHHhhhhhcCCCcEEEEEEcCCccCccchHHHHHHHHHHcCC-CEEEEEecCC-ccc
Q 021087 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLSSSSVATMAG-PLVPIYQNNF-EAM 302 (317)
Q Consensus 236 sg~lGtqlp~AvG~A~A~kl~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~l-PvVFV~eNNg-yAI 302 (317)
.+++|..+|.|+|+|+|.+ ++.|||+.|||++.-.. . .|-.++.+++ |+++||-||+ |..
T Consensus 220 ~GsMG~a~p~AlG~ala~p----~r~Vv~i~GDGsflm~~--~-eL~t~~~~~~~nli~VVlNNg~~~~ 281 (361)
T TIGR03297 220 VGSMGHASQIALGLALARP----DQRVVCLDGDGAALMHM--G-GLATIGTQGPANLIHVLFNNGAHDS 281 (361)
T ss_pred echhhhHHHHHHHHHHHCC----CCCEEEEEChHHHHHHH--H-HHHHHHHhCCCCeEEEEEcCccccc
Confidence 4889999999999998864 67799999999984331 2 5778888886 7877777777 653
No 127
>KOG1184 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=96.97 E-value=0.00099 Score=68.60 Aligned_cols=68 Identities=12% Similarity=0.129 Sum_probs=55.3
Q ss_pred ccCCCCCCCchhhhhHHhhhhhcCCCcEEEEEEcCCccCccchHHHHHHHHHHcCCC-EEEEEecCCccccccccc
Q 021087 234 TISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLSSSSVATMAGP-LVPIYQNNFEAMVLLLRV 308 (317)
Q Consensus 234 ~~sg~lGtqlp~AvG~A~A~kl~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~lP-vVFV~eNNgyAIStP~~~ 308 (317)
..-+++|-.++.+.|+|.|.+ ++.++.|+|||++++-. .| +.....|++| .||+++|+||-|..-.++
T Consensus 412 ~~wgsIG~svga~lG~a~a~~----e~rvilfiGDGs~qlTv-Qe--iStmir~gl~~~if~~NN~GYTIE~~IH~ 480 (561)
T KOG1184|consen 412 MQWGSIGWSVGATLGYAQAAP----EKRVILFIGDGSFQLTV-QE--ISTMIRWGLKPIIFLINNGGYTIEVEIHD 480 (561)
T ss_pred EEEeeccccchhhhhhhhccC----CceEEEEecCccceeeH-HH--HHHHHhcCCCcEEEEEeCCceEEEEeecC
Confidence 345778888888888888876 48899999999998764 44 8888999995 889999999999876655
No 128
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=96.58 E-value=0.0023 Score=74.17 Aligned_cols=60 Identities=18% Similarity=0.201 Sum_probs=45.3
Q ss_pred CCCCCC--CchhhhhHHhhhhhcCCCcEEEEEEcCCccCccchHHHHHHHHHHc--CCCEEEEEecCC-cccc
Q 021087 236 SSPIAT--QLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLSSSSVATM--AGPLVPIYQNNF-EAMV 303 (317)
Q Consensus 236 sg~lGt--qlp~AvG~A~A~kl~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~--~lPvVFV~eNNg-yAIS 303 (317)
-|.+|- .+|.|+|+++|. ++.|+|++|||+..-.. . .|..|+.+ ++|+++||-||+ |+|-
T Consensus 758 ~G~mG~~G~lpaAIGaala~-----~r~Vv~i~GDGsF~m~~-~--EL~Ta~r~~~~lpi~iVV~NN~gggi~ 822 (1655)
T PLN02980 758 RGASGIDGLLSTAIGFAVGC-----NKRVLCVVGDISFLHDT-N--GLSILSQRIARKPMTILVINNHGGAIF 822 (1655)
T ss_pred CCccchhhhHHHHHHHhhcC-----CCCEEEEEehHHHHhhh-h--HHHHhhcccCCCCEEEEEEeCCCcHhh
Confidence 356666 599999999884 56689999999997663 3 48888874 999766666666 7664
No 129
>PF09364 XFP_N: XFP N-terminal domain; InterPro: IPR018970 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=96.46 E-value=0.0074 Score=60.14 Aligned_cols=95 Identities=19% Similarity=0.262 Sum_probs=55.4
Q ss_pred HHHHHHHHhhCCCCCCCCCCCCcccCCCCCcccccCCCCCCCchhhhhHHhhhhhcCCCcEEEEEEcCCccCccchHHHH
Q 021087 201 LQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLS 280 (317)
Q Consensus 201 l~~~~~q~~G~~~g~~kGr~mp~H~~s~~~~i~~~sg~lGtqlp~AvG~A~A~kl~g~~~vvv~~~GDGatseGdfhE~A 280 (317)
+..++.|+ .-. | +.|.|.+-.-.|-.--.|-||-.+.+|.|+++ .+.|-+|+|++|||++.+|-.-.
T Consensus 111 l~~L~~~F-S~P-----g-GipSH~~p~tPGsIhEGGELGYaLshA~GA~~----DnPdliv~~vvGDGEaETGplA~-- 177 (379)
T PF09364_consen 111 LRRLFRQF-SFP-----G-GIPSHVSPETPGSIHEGGELGYALSHAFGAVF----DNPDLIVACVVGDGEAETGPLAA-- 177 (379)
T ss_dssp HHHHHHHB-TST-----T-SB-SSS-TTSTT-S---SSTS-HHHHHHHHHT----T-TT-EEEEEEETTGGGSHHHHH--
T ss_pred HHHHHHhC-CCC-----C-CCccccCcCCCCccCcCcchhhHHHHHhhccc----CCCCeEEEEEecCCcccCCcccc--
Confidence 45566663 332 2 36778766555655556777777777777665 56699999999999999995322
Q ss_pred HHHHHHc-----CCCEEEEEecCCccccccccc
Q 021087 281 SSSVATM-----AGPLVPIYQNNFEAMVLLLRV 308 (317)
Q Consensus 281 LN~Aa~~-----~lPvVFV~eNNgyAIStP~~~ 308 (317)
-..+-.| .--|+=|.-=|||-|+-|+--
T Consensus 178 sWh~~kflnP~~dGaVLPILhLNG~KI~~pTil 210 (379)
T PF09364_consen 178 SWHSNKFLNPATDGAVLPILHLNGYKISNPTIL 210 (379)
T ss_dssp HGGGGGSS-TTTS-EEEEEEEE-SBSSSSB-HH
T ss_pred cccccceeCcccCceeeceEEecCccccCCeEe
Confidence 2223233 223777888899999999743
No 130
>KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=95.42 E-value=0.031 Score=57.72 Aligned_cols=63 Identities=16% Similarity=0.055 Sum_probs=42.4
Q ss_pred CCCCCCCchhhhhHHhhhhhcCCCcEEEEEEcCCccCccchHHHHHHHHHHcCCCEEEEEecC-C-cccccc
Q 021087 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNN-F-EAMVLL 305 (317)
Q Consensus 236 sg~lGtqlp~AvG~A~A~kl~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~lPvVFV~eNN-g-yAIStP 305 (317)
.|.+|-++..|++ .++--.++-|+|..||+|.---. -| +-.++.++||||.||-|| | |+..+-
T Consensus 429 fgTMGVG~Gfala----aa~~~P~~~V~~veGDsaFGfSa-ME--~ET~vR~~Lpvv~vV~NN~Giyg~d~~ 493 (571)
T KOG1185|consen 429 FGTMGVGLGFALA----AALAAPDRKVVCVEGDSAFGFSA-ME--LETFVRYKLPVVIVVGNNNGIYGLDDD 493 (571)
T ss_pred ccccccchhHHHH----HHhhCCCCeEEEEecCcccCcch-hh--HHHHHHhcCCeEEEEecCCcccccCcc
Confidence 3556655544444 44444788899999999985432 34 778899999988777755 4 544443
No 131
>COG3957 Phosphoketolase [Carbohydrate transport and metabolism]
Probab=93.76 E-value=0.056 Score=57.91 Aligned_cols=85 Identities=16% Similarity=0.193 Sum_probs=61.2
Q ss_pred CCcccCCCCCcccccCCCCCCCchhhhhHHhhhhhcCCCcEEEEEEcCCccCccch----HHHHHHHHHHcCCCEEEEEe
Q 021087 221 MPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEQLW----KPLSSSSVATMAGPLVPIYQ 296 (317)
Q Consensus 221 mp~H~~s~~~~i~~~sg~lGtqlp~AvG~A~A~kl~g~~~vvv~~~GDGatseGdf----hE~ALN~Aa~~~lPvVFV~e 296 (317)
.+.|..-.-.|.....|.||..+.+|.|+|+ ...|-+++|++|||+..+|.. |. =-.++....--|+=|..
T Consensus 137 i~SH~~petPGsIhEGGeLGy~l~ha~gAa~----d~Pdli~~~vvGDGeaetgplatsWhs-~kf~np~~dGavLPIL~ 211 (793)
T COG3957 137 IGSHVAPETPGSIHEGGELGYALSHAYGAAF----DNPDLIVACVVGDGEAETGPLATSWHS-NKFLNPARDGAVLPILH 211 (793)
T ss_pred cccccCCCCCCccCcCcchhHHHHHHHHhhc----CCCCcEEEEEecccccccCcccccccc-ccccCccccCceeeEEE
Confidence 6778876677777777889988888887776 556889999999998888852 21 12222223334777788
Q ss_pred cCCccccccccccc
Q 021087 297 NNFEAMVLLLRVVH 310 (317)
Q Consensus 297 NNgyAIStP~~~~~ 310 (317)
=|||.|+-|+-..+
T Consensus 212 lNGykI~npT~lar 225 (793)
T COG3957 212 LNGYKIENPTVLAR 225 (793)
T ss_pred ecceeccCceeeee
Confidence 89999999975443
No 132
>COG1013 PorB Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit [Energy production and conversion]
Probab=92.41 E-value=0.22 Score=48.32 Aligned_cols=62 Identities=13% Similarity=0.007 Sum_probs=50.1
Q ss_pred cccCCCCCCCchhhhhHHhhhhhcCCCcEEEEEEcCC-ccCccchHHHHHHHHHHcCCCEEEEEecCC-cc
Q 021087 233 ITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDG-GTSEQLWKPLSSSSVATMAGPLVPIYQNNF-EA 301 (317)
Q Consensus 233 ~~~sg~lGtqlp~AvG~A~A~kl~g~~~vvv~~~GDG-atseGdfhE~ALN~Aa~~~lPvVFV~eNNg-yA 301 (317)
....+.-|-+++.|.|+.+|.+ +..|+++-||| +...|- . .+--|...+..|++||-||. |+
T Consensus 66 ~~~hs~~gra~a~atGik~A~~----~l~Viv~gGDG~~~dIG~--~-~l~h~~~Rn~dit~iv~DNevYg 129 (294)
T COG1013 66 PWVHSLHGRAAAVATGIKLANP----ALSVIVIGGDGDAYDIGG--N-HLIHALRRNHDITYIVVDNEVYG 129 (294)
T ss_pred CceeeccCcchhhHHHHHHhcc----CCeEEEEecchhHhhhhh--H-HHHHHHHcCCCeEEEEECCeecc
Confidence 3455677888888888888877 44899999999 778885 4 68889999999999999997 53
No 133
>KOG0451 consensus Predicted 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism]
Probab=91.11 E-value=2.7 Score=44.69 Aligned_cols=173 Identities=17% Similarity=0.099 Sum_probs=114.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccc--CCchHHHHHHHHhcc-------CCCCeeec-CCchHHHHH
Q 021087 126 QVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLT--TIGEEAINIGSAAAL-------SADDFILP-QYREPGVLL 195 (317)
Q Consensus 126 ~ls~e~l~~lYr~M~~~R~~D~~~~~lqrqGrigfy~~--~~GqEA~~VG~a~AL-------~~~D~v~~-~YR~~g~~l 195 (317)
.+.+|+..++-+.|+....||.-+.... +.+-. .-|.|-.- |...-| .-+|+|+. -||+.--++
T Consensus 153 ~l~keEr~~i~~Lmlksq~fD~FlatKF-----pTvKRYGgEGAESM~-aFF~eLl~~sa~~~ie~viigmpHRGRlnLl 226 (913)
T KOG0451|consen 153 QLGKEERCEIAELMLKSQAFDNFLATKF-----PTVKRYGGEGAESML-AFFWELLRDSAQANIEHVIIGMPHRGRLNLL 226 (913)
T ss_pred HhhHHHHHHHHHHHHhhhhHHHHHHhcc-----chhhhhccccHHHHH-HHHHHHHHHHHhcCcceEEEeccccCcchHH
Confidence 5778889999999999999999876532 22221 22323221 222212 34678776 589876544
Q ss_pred --HhCCCHHHHHHHHhhCCCCC------------------CCCCCCCcccCCCCCcccccCCCCCCCchhhhhHHhhhhh
Q 021087 196 --WRGYTLQQFANQVFANKADD------------------GKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKM 255 (317)
Q Consensus 196 --~rG~~l~~~~~q~~G~~~g~------------------~kGr~mp~H~~s~~~~i~~~sg~lGtqlp~AvG~A~A~kl 255 (317)
...+++..++..+-|...=+ -||...+.|. -+.+.-++|-+--|.|+|-+-+...
T Consensus 227 t~Ll~fpP~~mFRK~~G~sEFpE~~~A~gDVlSHl~sS~dykg~~~~lhv-----tMlpNPSHLEAvNPVAmGKtR~rqq 301 (913)
T KOG0451|consen 227 TALLNFPPAKMFRKLSGASEFPEDIEAMGDVLSHLHSSEDYKGLGKKLHV-----TMLPNPSHLEAVNPVAMGKTRSRQQ 301 (913)
T ss_pred HHHhcCCHHHHHHHhcCcccCchhhhHHHHHHHHhhhhhhhcccCCceEE-----EecCChhhhhccCchhhcchhHHHH
Confidence 35788888888877665311 2555555553 3455567788888999998777553
Q ss_pred cC-------------CCc-EEEEEEcCCcc-CccchHHHHHHHHH--HcCCC-EEEEEecCCccccccccccc
Q 021087 256 EK-------------KDA-CAVAYTGDGGT-SEQLWKPLSSSSVA--TMAGP-LVPIYQNNFEAMVLLLRVVH 310 (317)
Q Consensus 256 ~g-------------~~~-vvv~~~GDGat-seGdfhE~ALN~Aa--~~~lP-vVFV~eNNgyAIStP~~~~~ 310 (317)
.. .|. +.|..-||++. .+|.++| .+|++- .+++- -|-+|-||+.+..||.+...
T Consensus 302 sr~~Gdyspd~sa~~Gd~Vlnv~vHGDaaF~GQGiv~E-~~~ls~~PHFrvGGsvHLivNNQvgfTtp~~rGR 373 (913)
T KOG0451|consen 302 SRGEGDYSPDSSAPFGDHVLNVIVHGDAAFAGQGIVQE-CLNLSYVPHFRVGGSVHLIVNNQVGFTTPGDRGR 373 (913)
T ss_pred hhcCCCCCCCCcCCCCCceEEEEEecchhhccCcccHH-HHhhccCCceeecceEEEEecccccccCcccccc
Confidence 21 122 45667799996 5899999 999985 45553 67889999999999977654
No 134
>COG3960 Glyoxylate carboligase [General function prediction only]
Probab=88.96 E-value=0.45 Score=47.77 Aligned_cols=92 Identities=18% Similarity=0.159 Sum_probs=65.7
Q ss_pred HHHHHHHHhhCCCCCC--------CCCCCCcccCCCCCcc-cccCCCCCCCchhhhhHHhhhhhcCCCcEEEEEEcCCcc
Q 021087 201 LQQFANQVFANKADDG--------KGRQMPIHYGSKKLNY-ITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGT 271 (317)
Q Consensus 201 l~~~~~q~~G~~~g~~--------kGr~mp~H~~s~~~~i-~~~sg~lGtqlp~AvG~A~A~kl~g~~~vvv~~~GDGat 271 (317)
..+.|++.||+..-+. .|.|. .|...+.+=+ .+..||+|..+|.|.|+-.| ..++-+|++-||=..
T Consensus 375 vyeemn~~fgrd~~yvstiglsqia~aqf-lhv~~pr~wincgqagplgwtipaalgv~~a----dp~r~vvalsgdydf 449 (592)
T COG3960 375 VYEEMNKAFGRDVCYVTTIGLSQIAAAQF-LHVFKPRHWINCGQAGPLGWTIPAALGVCAA----DPKRNVVAISGDYDF 449 (592)
T ss_pred HHHHHHhhcCCceeEEEeccHHHHhhhhh-hhhcCCcceeecCccCCcccccchhhceeec----CCCCceEEeecCchH
Confidence 3567788888876432 23332 4655554433 56789999999999887554 446778899898654
Q ss_pred CccchHHHHHHHHHHcCCCEEEEEecCCc
Q 021087 272 SEQLWKPLSSSSVATMAGPLVPIYQNNFE 300 (317)
Q Consensus 272 seGdfhE~ALN~Aa~~~lPvVFV~eNNgy 300 (317)
+- .-| -|..++.+|+|-|-|+-||.|
T Consensus 450 qf--mie-elavgaq~k~pyihv~vnnay 475 (592)
T COG3960 450 QF--LIE-ELAVGAQFKIPYIHVLVNNAY 475 (592)
T ss_pred HH--HHH-HHhhhhcccCceEEEEecchH
Confidence 32 235 688999999999999999987
No 135
>COG1165 MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism]
Probab=88.62 E-value=4.9 Score=42.46 Aligned_cols=162 Identities=14% Similarity=0.153 Sum_probs=81.6
Q ss_pred ceEEeCCCCCcccCCCCC----CCCHHHHHHHH------H--HHHHHHHHHHHHHHHHhcCcccccccCCchHHHHHHHH
Q 021087 108 CFRVLDDNGELIKGSDFQ----QVSKEVAVKMY------S--HMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSA 175 (317)
Q Consensus 108 ~~rvld~~G~~~~~~~~~----~ls~e~l~~lY------r--~M~~~R~~D~~~~~lqrqGrigfy~~~~GqEA~~VG~a 175 (317)
.|-|+|+.+...||.... .-+..+..+-+ + +....-.+.+++.+..++-.-+. ...|-.++...+
T Consensus 307 ~~~vvd~~~~~~Dp~~~~~~~~~~~v~~~~~~~~~~~~~~~~Wl~~~~~~~~~~~~~v~~~~~~~---~~~e~~~a~~l~ 383 (566)
T COG1165 307 EYWVVDPGGGWLDPSHHATTRLSADVATWARSIHPAGRIRKPWLDEWLALNEKARQAVRDQLAAE---ALTEAHLAAALA 383 (566)
T ss_pred cEEEEcCCCCcCCcccccceEEEeehhHhHHHhccccccccHHHHHHHHHHHHHHHHHHHHhccc---CchhhHHHHHHH
Confidence 488999999998886432 11333333211 1 12222233344433332211111 232323333456
Q ss_pred hccCCCCeeecCCchHHHHHHhCCCHHHHHHHHhhCCCCCCCCCCCCcccCCCCCcccccCCCCCCCchhhhhHHhhhhh
Q 021087 176 AALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKM 255 (317)
Q Consensus 176 ~AL~~~D~v~~~YR~~g~~l~rG~~l~~~~~q~~G~~~g~~kGr~mp~H~~s~~~~i~~~sg~lGtqlp~AvG~A~A~kl 255 (317)
..|.++|-+|..- -++++++= .++... +| .+++ + ..|.-+|-|.+.| |+|++.|.+
T Consensus 384 ~~lp~~~~LFvgN---------SmpVRdvd--~~~~~~---~~--~~v~-s--NRGA~GIDG~vST----A~Gi~~a~~- 439 (566)
T COG1165 384 DLLPPQDQLFVGN---------SMPVRDVD--ALGQLP---AG--YRVY-S--NRGASGIDGTVST----ALGIARATQ- 439 (566)
T ss_pred HhCCCCCeEEEec---------CchhhhHH--HhccCc---cC--ceee-c--CCCccccchhHHH----HhhhhhhcC-
Confidence 6777888777641 12222222 234331 12 2222 1 2233334455554 888888655
Q ss_pred cCCCcEEEEEEcCCccCccchHH-HHHHHHHHcCCC-EEEEEecCCccccc
Q 021087 256 EKKDACAVAYTGDGGTSEQLWKP-LSSSSVATMAGP-LVPIYQNNFEAMVL 304 (317)
Q Consensus 256 ~g~~~vvv~~~GDGatseGdfhE-~ALN~Aa~~~lP-vVFV~eNNgyAISt 304 (317)
.-+|..+||=++ +|. -+|-+.-....| +|+|++|||-+|--
T Consensus 440 ----~ptv~liGDLS~----lhD~NgLl~~k~~~~~ltIvv~NNnGGgIF~ 482 (566)
T COG1165 440 ----KPTVALIGDLSF----LHDLNGLLLLKKVPQPLTIVVVNNNGGGIFS 482 (566)
T ss_pred ----CceEEEEechhh----hhccchHhhcCCCCCCeEEEEEeCCCceeee
Confidence 238999999766 444 023233333446 88899999998864
No 136
>COG0567 SucA 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes [Energy production and conversion]
Probab=86.60 E-value=23 Score=39.56 Aligned_cols=182 Identities=12% Similarity=0.049 Sum_probs=120.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcccccccCCchHHHHHHHHhc------cCCCCeeec-CCchHHHH
Q 021087 123 DFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQ-RQGRFSFYLTTIGEEAINIGSAAA------LSADDFILP-QYREPGVL 194 (317)
Q Consensus 123 ~~~~ls~e~l~~lYr~M~~~R~~D~~~~~lq-rqGrigfy~~~~GqEA~~VG~a~A------L~~~D~v~~-~YR~~g~~ 194 (317)
..+.++.|+.+.+++++...-.||+-+-.-+ .|.|.| --|-|+.-.++-.. ..-+++|+. .||+.=-.
T Consensus 168 ~~~~~~~e~k~~~l~~L~~ae~fE~fl~~kf~g~KRFs----lEG~eslip~l~~~i~~~~~~G~~~vviGMaHRGRLNv 243 (906)
T COG0567 168 GKPTFTAEEKKAILKRLTAAEGFERFLHTKFPGAKRFS----LEGGESLIPMLDELIDRAGKQGVKEVVIGMAHRGRLNV 243 (906)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHhhccCCCCcccc----ccchhhHHHHHHHHHHHHHhcCcceEEecccccchHHH
Confidence 3567899999999999999999988774433 344432 24556654433333 344678777 69987644
Q ss_pred H--HhCCCHHHHHHHHhhCCCCCCCCCCCCcccCC-CC---------CcccccCCCCCCCchhhhhHHhhhhhcC-----
Q 021087 195 L--WRGYTLQQFANQVFANKADDGKGRQMPIHYGS-KK---------LNYITISSPIATQLPQAVGVAYSLKMEK----- 257 (317)
Q Consensus 195 l--~rG~~l~~~~~q~~G~~~g~~kGr~mp~H~~s-~~---------~~i~~~sg~lGtqlp~AvG~A~A~kl~g----- 257 (317)
| ..|.+++.+++|+-|+..-...-....-|.|. .+ +-+...-|+|-.--|+..|.+-|.+-..
T Consensus 244 L~nvlgKp~~~if~eF~g~~~~~~~sGDVKYH~G~~~~~~~~~~~v~l~La~NPSHLE~v~PVV~G~vRa~Qd~~~d~~~ 323 (906)
T COG0567 244 LVNVLGKPYRDIFDEFEGKSAEPDLSGDVKYHLGFSSDRQTDGGKVHLSLAFNPSHLEIVNPVVEGSVRAKQDRLGDTER 323 (906)
T ss_pred HHHHhCCCHHHHHHHhCCCCCCCCcccccccccccccccccCCCeeEEEecCCcchhhhhchhhhcchHhhhhhhccCcc
Confidence 4 47999999999998865321111112223321 11 1122334677777788999988876432
Q ss_pred CCcEEEEEEcCCcc-CccchHHHHHHHHHHcCC---CEEEEEecCCcccccccccc
Q 021087 258 KDACAVAYTGDGGT-SEQLWKPLSSSSVATMAG---PLVPIYQNNFEAMVLLLRVV 309 (317)
Q Consensus 258 ~~~vvv~~~GDGat-seGdfhE~ALN~Aa~~~l---PvVFV~eNNgyAIStP~~~~ 309 (317)
.+.+.+...||.|. .||.+.| .||+....+- +.|=||-||+..-.|...+.
T Consensus 324 ~k~lpiliHGDAAfaGQGVV~E-tlnls~~~gysvgGtiHiviNNQiGFTTsp~~s 378 (906)
T COG0567 324 DKVLPILIHGDAAFAGQGVVAE-TLNLSRLDGYSVGGTWHIVINNQIGFTTSPADA 378 (906)
T ss_pred ceeEEEEEecChhcCCccHHHH-HHHhhCCCCcccCCeEEEEEecCCCCCCCcccc
Confidence 23567899999986 5899999 9999986644 68888999998877774443
No 137
>KOG4166 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=80.89 E-value=2.1 Score=44.37 Aligned_cols=65 Identities=22% Similarity=0.245 Sum_probs=46.8
Q ss_pred CCCcccccCCC---CCCCchhhhhHHhhhhhcCCCcEEEEEEcCCccCccchHHHHHHHHHHcCCCEEEEEecCC
Q 021087 228 KKLNYITISSP---IATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNNF 299 (317)
Q Consensus 228 ~~~~i~~~sg~---lGtqlp~AvG~A~A~kl~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~lPvVFV~eNNg 299 (317)
++.+-+-.||- .|-++|.|+|+-.| +.+.+|+-+=||++.+--. .| |..+-..++||-+++-||.
T Consensus 512 ~kP~~~~tSGGLGtMGfGLPAAIGAsVA----~P~~iViDIDGDaSF~Mt~-~E--Lat~rq~~~PVKiLiLNNe 579 (675)
T KOG4166|consen 512 KKPRQWLTSGGLGTMGFGLPAAIGASVA----NPDAIVIDIDGDASFIMTV-QE--LATIRQENLPVKILILNNE 579 (675)
T ss_pred cCccceeecCCccccccCcchhhccccc----CcccEEEeccCCceeeeeh-Hh--hhhhhhcCCceEEEEecch
Confidence 33333444444 45567877777665 4588999999999987653 34 7778889999988888886
No 138
>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate deca
Probab=71.98 E-value=7.6 Score=32.30 Aligned_cols=52 Identities=15% Similarity=0.046 Sum_probs=37.1
Q ss_pred hhhhHHhhhhhcCCCcEEEEEEcCCccCccchHHHHHHHHHHcCCCEEEEEecCCc
Q 021087 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNNFE 300 (317)
Q Consensus 245 ~AvG~A~A~kl~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~lPvVFV~eNNgy 300 (317)
.|+|+|.+.-+.+...++++.+|.|.++ ..+ ++-.|...++|||+++-..+.
T Consensus 46 ~a~~~A~G~a~~~~~~v~~~~~gpg~~~---~~~-~l~~a~~~~~Pvl~i~~~~~~ 97 (154)
T cd06586 46 GAAGAAAGYARAGGPPVVIVTSGTGLLN---AIN-GLADAAAEHLPVVFLIGARGI 97 (154)
T ss_pred HHHHHHHHHHHhhCCEEEEEcCCCcHHH---HHH-HHHHHHhcCCCEEEEeCCCCh
Confidence 3677777766666544555556998763 446 777888889999999977664
No 139
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=71.21 E-value=5.7 Score=42.56 Aligned_cols=66 Identities=14% Similarity=0.118 Sum_probs=46.7
Q ss_pred CCcccccCCCCCCCchhhhhHHhhhhhcCCCcEEEEEEcCCccCccchHHHHHHHHHHcCCCEEEEEecCCcc
Q 021087 229 KLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNNFEA 301 (317)
Q Consensus 229 ~~~i~~~sg~lGtqlp~AvG~A~A~kl~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~lPvVFV~eNNgyA 301 (317)
+.+-...+-..|.++.+|-|++++.. +.+++++|||..-.--. . ++-.|...+.+++++|-+|.+.
T Consensus 420 P~~~~d~t~~mGssig~a~g~~~~~~-----k~~va~iGDsTF~HsGi-~-~l~nAV~n~~~~~~vvLdN~~t 485 (640)
T COG4231 420 PLNTVDTTTMMGSSIGIAGGLSFAST-----KKIVAVIGDSTFFHSGI-L-ALINAVYNKANILVVVLDNRTT 485 (640)
T ss_pred CcchhhhhhhccchhhhccccccccC-----CceEEEeccccccccCc-H-HHHHHHhcCCCeEEEEEeccch
Confidence 34444455566777777777766544 67999999998743332 3 5777888899999999888864
No 140
>cd03377 TPP_PFOR_PNO Thiamine pyrophosphate (TPP family), PFOR_PNO subfamily, TPP-binding module; composed of proteins similar to the single subunit pyruvate ferredoxin oxidoreductase (PFOR) of Desulfovibrio Africanus, present in bacteria and amitochondriate eukaryotes. This subfamily also includes proteins characterized as pyruvate NADP+ oxidoreductase (PNO). These enzymes are dependent on TPP and a divalent metal cation as cofactors. PFOR and PNO catalyze the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The PFOR from cyanobacterium Anabaena (NifJ) is required for the transfer of electrons from pyruvate to flavodoxin, which reduces nitrogenase. The facultative anaerobic mitochondrion of the photosynthetic protist Euglena gra
Probab=57.89 E-value=14 Score=37.27 Aligned_cols=40 Identities=10% Similarity=-0.037 Sum_probs=30.8
Q ss_pred cEEEEEEcCCcc-CccchHHHHHHHHHHcCCCEEEEEecCC-ccc
Q 021087 260 ACAVAYTGDGGT-SEQLWKPLSSSSVATMAGPLVPIYQNNF-EAM 302 (317)
Q Consensus 260 ~vvv~~~GDGat-seGdfhE~ALN~Aa~~~lPvVFV~eNNg-yAI 302 (317)
.-|+++.|||.+ .-|- . ++--|...+-+|.+||-||. |+-
T Consensus 152 ~~v~v~gGDG~~ydIG~--~-~l~ha~~r~~ni~~iv~DNe~Y~n 193 (365)
T cd03377 152 KSVWIIGGDGWAYDIGY--G-GLDHVLASGENVNILVLDTEVYSN 193 (365)
T ss_pred cceEEEecchhhhccch--h-hHHHHHHcCCCeEEEEECCccccc
Confidence 358999999944 6674 4 67778888999888888887 653
No 141
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=55.70 E-value=19 Score=37.89 Aligned_cols=50 Identities=14% Similarity=0.191 Sum_probs=36.0
Q ss_pred hhhhhcCCCcEEEEEEcCCccCccchHHHHHHHHHHcCCCE-EEEEecCCcccc
Q 021087 251 YSLKMEKKDACAVAYTGDGGTSEQLWKPLSSSSVATMAGPL-VPIYQNNFEAMV 303 (317)
Q Consensus 251 ~A~kl~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~lPv-VFV~eNNgyAIS 303 (317)
++.|+.+.++=|++++|||+.- ..|. -|-.+..++.-+ |.+.+|-||+.=
T Consensus 454 lG~K~a~pdreV~vmVGDGSym--MlnS-EL~Tsv~~g~Ki~Vvl~DN~GyGCI 504 (617)
T COG3962 454 LGAKAAEPDREVYVMVGDGSYM--MLNS-ELATSVMLGKKIIVVLLDNRGYGCI 504 (617)
T ss_pred cccccCCCCCeEEEEEcccchh--hhhH-HHHHHHHcCCeEEEEEECCCCcchh
Confidence 3447888889999999999864 3455 577788888874 455666678643
No 142
>cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th
Probab=51.21 E-value=19 Score=30.57 Aligned_cols=49 Identities=18% Similarity=0.061 Sum_probs=35.0
Q ss_pred hhhHHhhhhhcCCCcEEEEEEcCCccCccchHHHHHHHHHHcCCCEEEEEecCC
Q 021087 246 AVGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNNF 299 (317)
Q Consensus 246 AvG~A~A~kl~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~lPvVFV~eNNg 299 (317)
|+++|.+..+.+.+ ++++.-|-|.++-- . +|--|...+.|+|+++-+-.
T Consensus 53 A~~~A~g~~r~~~~-v~~~~~gpG~~n~~---~-~l~~a~~~~~P~v~i~g~~~ 101 (160)
T cd07034 53 AAEAAIGASAAGAR-AMTATSGPGLNLMA---E-ALYLAAGAELPLVIVVAQRP 101 (160)
T ss_pred HHHHHHHHHhhCCc-EEEeeCcchHHHHH---H-HHHHHHhCCCCEEEEEeeCC
Confidence 56666665555544 77777888888744 5 77777778899999986654
No 143
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=43.48 E-value=40 Score=27.27 Aligned_cols=40 Identities=5% Similarity=-0.047 Sum_probs=30.0
Q ss_pred CcEEEEEEcCCccCccchHHHHHHHHHHcCCCEEEEEecCCc
Q 021087 259 DACAVAYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNNFE 300 (317)
Q Consensus 259 ~~vvv~~~GDGatseGdfhE~ALN~Aa~~~lPvVFV~eNNgy 300 (317)
-.++|+.+.+--.+.|..+| +-+|..++.||+.++++...
T Consensus 62 ~D~via~l~~~~~d~Gt~~E--lG~A~algkpv~~~~~d~~~ 101 (113)
T PF05014_consen 62 CDIVIANLDGFRPDSGTAFE--LGYAYALGKPVILLTEDDRP 101 (113)
T ss_dssp SSEEEEEECSSS--HHHHHH--HHHHHHTTSEEEEEECCCCT
T ss_pred CCEEEEECCCCCCCCcHHHH--HHHHHHCCCEEEEEEcCCcc
Confidence 34555555554588999999 88899999999999988775
No 144
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=42.06 E-value=42 Score=28.93 Aligned_cols=57 Identities=16% Similarity=-0.121 Sum_probs=33.2
Q ss_pred hhHHhhhhhcCCCcEEEEEEcCCccCccchHHHHHHHHHHcCCCEEEEEecCCccc--ccccc
Q 021087 247 VGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNNFEAM--VLLLR 307 (317)
Q Consensus 247 vG~A~A~kl~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~lPvVFV~eNNgyAI--StP~~ 307 (317)
+|+|-++-+.| .+++++.+ .... .-.++|=.|.++.+++||++++...++.. ..|++
T Consensus 52 vg~A~GlA~~G-~~pi~~~~--~~f~-~ra~dqi~~~~a~~~~pv~~~~~~~g~~~~~~G~tH 110 (156)
T cd07033 52 VGIAAGLALHG-LKPFVSTF--SFFL-QRAYDQIRHDVALQNLPVKFVGTHAGISVGEDGPTH 110 (156)
T ss_pred HHHHHHHHHCC-CeEEEEEC--HHHH-HHHHHHHHHHHhccCCCeEEEEECCcEecCCCCccc
Confidence 33333333455 34444444 2222 33456234599999999999998876654 55554
No 145
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=40.80 E-value=40 Score=28.36 Aligned_cols=51 Identities=20% Similarity=0.143 Sum_probs=33.9
Q ss_pred hhhhHHhhhhhcCC-CcEEEEEEcCCccCccchHHHHHHHHHHcCCCEEEEEecCC
Q 021087 245 QAVGVAYSLKMEKK-DACAVAYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNNF 299 (317)
Q Consensus 245 ~AvG~A~A~kl~g~-~~vvv~~~GDGatseGdfhE~ALN~Aa~~~lPvVFV~eNNg 299 (317)
-|+++|.+.-+.+. ..++++-.|=|.++- .+ ++--|...++|+|++.-+..
T Consensus 45 ~A~~~A~g~~~~~~~~~v~~~~~gpG~~n~---~~-~l~~A~~~~~Pll~i~~~~~ 96 (155)
T cd07035 45 GAVGMADGYARATGKPGVVLVTSGPGLTNA---VT-GLANAYLDSIPLLVITGQRP 96 (155)
T ss_pred HHHHHHHHHHHHHCCCEEEEEcCCCcHHHH---HH-HHHHHHhhCCCEEEEeCCCc
Confidence 36666666665543 445555557775543 46 88888888999999886544
No 146
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=34.21 E-value=55 Score=33.87 Aligned_cols=31 Identities=26% Similarity=0.026 Sum_probs=23.3
Q ss_pred chHHHHHHHHH--------HcCCCEEEEEecCCcccccc
Q 021087 275 LWKPLSSSSVA--------TMAGPLVPIYQNNFEAMVLL 305 (317)
Q Consensus 275 dfhE~ALN~Aa--------~~~lPvVFV~eNNgyAIStP 305 (317)
..++|-.|.++ .+++||+|+..|-+++-..+
T Consensus 227 ra~dQI~n~~ak~~~~sgg~~~~pVv~~g~~G~~~~~G~ 265 (464)
T PRK11892 227 QAIDQIINSAAKTLYMSGGQMGCPIVFRGPNGAAARVAA 265 (464)
T ss_pred HHHHHHHHHHhHHhhhcCCccCCCEEEEecCCCCCCCCC
Confidence 33465778888 99999999999887654333
No 147
>KOG0450 consensus 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism]
Probab=32.43 E-value=3.3e+02 Score=30.47 Aligned_cols=175 Identities=16% Similarity=0.131 Sum_probs=114.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccccccCCchHHHHHHHHhcc------CCCCeeec-CCchHHHHHH-
Q 021087 126 QVSKEVAVKMYSHMVTLQVMDSVLYEAQRQ-GRFSFYLTTIGEEAINIGSAAAL------SADDFILP-QYREPGVLLW- 196 (317)
Q Consensus 126 ~ls~e~l~~lYr~M~~~R~~D~~~~~lqrq-Grigfy~~~~GqEA~~VG~a~AL------~~~D~v~~-~YR~~g~~l~- 196 (317)
.++.|+-.-++.+..+.-.||+-+....-. .|.| --|-|..--|+-..+ .-+++|+. -||+.--.|+
T Consensus 245 q~s~e~k~~il~RL~~st~FE~FLa~Kw~seKRFG----LEGcE~lIP~mK~iiDrS~elGVe~iviGMpHRGRLNvL~N 320 (1017)
T KOG0450|consen 245 QYSHEQKRVILDRLTRSTRFEEFLATKWPSEKRFG----LEGCEVLIPAMKTIIDRSSELGVESIVIGMPHRGRLNVLAN 320 (1017)
T ss_pred ccCHHHHHHHHHHHHHhhHHHHHHhhhCCcccccc----ccchhhhhhHHHHHhhhhhhcCchheEecCCccchhHHHHH
Confidence 678999889999999988998887664432 2222 244455544444333 34567776 5897664443
Q ss_pred -hCCCHHHHHHHHhhCCCCCCCCCC-CCcccCC----------C--CCcccccCCCCCCCchhhhhHHhhhhh-----cC
Q 021087 197 -RGYTLQQFANQVFANKADDGKGRQ-MPIHYGS----------K--KLNYITISSPIATQLPQAVGVAYSLKM-----EK 257 (317)
Q Consensus 197 -rG~~l~~~~~q~~G~~~g~~kGr~-mp~H~~s----------~--~~~i~~~sg~lGtqlp~AvG~A~A~kl-----~g 257 (317)
--.++++++.|+-|-.. .-.|.+ .--|++- + .+.++..-|+|-+.=|+..|---|... .+
T Consensus 321 VvRKpl~qIfseF~g~~~-~DeGSGDVKYHLG~~~~R~~r~s~k~i~LslVANPSHLEA~DPVV~GKtrA~q~y~~D~~~ 399 (1017)
T KOG0450|consen 321 VVRKPLEQIFSEFSGLEA-ADEGSGDVKYHLGMYYERPNRVSGKNITLSLVANPSHLEAVDPVVMGKTRAEQFYTGDEEG 399 (1017)
T ss_pred HHhhHHHHHHHhccCCCC-CcCCCCceeeeeccccccccccCCceeEEEEecCchhhcccCceeechHHHHHHhcccccc
Confidence 23689999999876332 111221 1223321 1 112345567888888999997777664 35
Q ss_pred CCcEEEEEEcCCcc-CccchHHHHHHHHHHcCC---CEEEEEecCCccccccc
Q 021087 258 KDACAVAYTGDGGT-SEQLWKPLSSSSVATMAG---PLVPIYQNNFEAMVLLL 306 (317)
Q Consensus 258 ~~~vvv~~~GDGat-seGdfhE~ALN~Aa~~~l---PvVFV~eNNgyAIStP~ 306 (317)
++...|.+-||+|. .+|.++| .+++-..=+- -.|-||-||+.+..|--
T Consensus 400 ~k~m~ILiHGDaaFAgQGVVyE-T~hls~LP~YtT~GTvHvVvNNQIgFTTDP 451 (1017)
T KOG0450|consen 400 KKVMGILIHGDAAFAGQGVVYE-TFHLSDLPSYTTGGTVHVVVNNQIGFTTDP 451 (1017)
T ss_pred ceeEEEEEecchhhccCceEEE-eeccccCCCcccCCeEEEEEccccccccCc
Confidence 66689999999996 5899999 8888753322 27899999998776643
No 148
>PF03646 FlaG: FlaG protein; InterPro: IPR005186 Although these proteins are known to be important for flagellar their exact function is unknown.; PDB: 2HC5_A.
Probab=29.46 E-value=60 Score=26.30 Aligned_cols=33 Identities=24% Similarity=0.439 Sum_probs=24.6
Q ss_pred CCCceEEeCCC-CCcccCCCCCCCCHHHHHHHHHHHHHH
Q 021087 105 RVPCFRVLDDN-GELIKGSDFQQVSKEVAVKMYSHMVTL 142 (317)
Q Consensus 105 ~~p~~rvld~~-G~~~~~~~~~~ls~e~l~~lYr~M~~~ 142 (317)
.-.+++|+|.+ |++|. .++.|++++|++.|.-+
T Consensus 66 ~~~vVkViD~~T~eVIR-----qIP~Ee~l~l~~~l~e~ 99 (107)
T PF03646_consen 66 GRVVVKVIDKETGEVIR-----QIPPEELLDLAKRLREL 99 (107)
T ss_dssp TEEEEEEEETTT-SEEE-----EE-HHHHHHHHHHHHHH
T ss_pred CcEEEEEEECCCCcEEE-----eCCcHHHHHHHHHHHHH
Confidence 45679999996 77775 48899999999988543
No 149
>TIGR00589 ogt O-6-methylguanine DNA methyltransferase. All proteins in this family for which functions are known are involved alkyl-DNA transferases which remove alkyl groups from DNA as part of alkylation DNA repair. Some of the proteins in this family are also transcription regulators and have a distinct transcription regulatory domain. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=28.95 E-value=34 Score=26.99 Aligned_cols=17 Identities=47% Similarity=0.833 Sum_probs=14.8
Q ss_pred CCCCceEEeCCCCCccc
Q 021087 104 KRVPCFRVLDDNGELIK 120 (317)
Q Consensus 104 ~~~p~~rvld~~G~~~~ 120 (317)
..+||+||++.+|.+-.
T Consensus 49 ~~iPcHRVv~s~G~l~~ 65 (80)
T TIGR00589 49 ILVPCHRVIGKNGSLTG 65 (80)
T ss_pred CCCCCceeECCCCCCCC
Confidence 47999999999999854
No 150
>PLN02527 aspartate carbamoyltransferase
Probab=28.09 E-value=3e+02 Score=26.80 Aligned_cols=168 Identities=12% Similarity=0.061 Sum_probs=89.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHH-HHHHhcCcc-c--ccccCCchHHHHHHHHhccCCCCeeecCCchHHHHHHhCCC
Q 021087 125 QQVSKEVAVKMYSHMVTLQVMDSVL-YEAQRQGRF-S--FYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYT 200 (317)
Q Consensus 125 ~~ls~e~l~~lYr~M~~~R~~D~~~-~~lqrqGri-g--fy~~~~GqEA~~VG~a~AL~~~D~v~~~YR~~g~~l~rG~~ 200 (317)
.+++++++..++.....++.....- ....-+||. . |+-+|.=--..=-..+.-|. ++.++..-......+.+|-+
T Consensus 7 ~d~s~~el~~ll~~A~~~k~~~~~~~~~~~L~gk~v~llF~epStRTR~SFe~A~~~LG-g~~i~l~~~~~~s~~~kgEs 85 (306)
T PLN02527 7 QQFDREMLELLFEVAREMEKVERGSPGSQMLKGYLMATLFYEPSTRTRLSFESAMKRLG-GEVLTTENAGEFSSAAKGET 85 (306)
T ss_pred hhCCHHHHHHHHHHHHHHHhhhhcCCccccCCCCEEEEEEcCCCchhHHHHHHHHHHcC-CCEEEeCCCCCccccCCCcC
Confidence 4689999999998887776632210 011234554 2 55554422222212222333 34555543321235677888
Q ss_pred HHHHHHHHhhCCCCCC--C-CCCCCcccCCCCCcccccCCC--CCCCchhhhhHHhhhhh-cC-CCcEEEEEEcCCccCc
Q 021087 201 LQQFANQVFANKADDG--K-GRQMPIHYGSKKLNYITISSP--IATQLPQAVGVAYSLKM-EK-KDACAVAYTGDGGTSE 273 (317)
Q Consensus 201 l~~~~~q~~G~~~g~~--k-Gr~mp~H~~s~~~~i~~~sg~--lGtqlp~AvG~A~A~kl-~g-~~~vvv~~~GDGatse 273 (317)
+.+...- +++-.|.. + .....++...+...+.-+++- ...+..|+..=.+.++- .| -+.+.|+++||+.-+
T Consensus 86 ~~Dta~v-ls~y~D~iviR~~~~~~~~~~a~~~~vPVINa~~g~~~HPtQ~LaDl~Ti~e~~g~l~g~kva~vGD~~~~- 163 (306)
T PLN02527 86 LEDTIRT-VEGYSDIIVLRHFESGAARRAAATAEIPVINAGDGPGQHPTQALLDVYTIQREIGRLDGIKVGLVGDLANG- 163 (306)
T ss_pred HHHHHHH-HHHhCcEEEEECCChhHHHHHHHhCCCCEEECCCCCCCChHHHHHHHHHHHHHhCCcCCCEEEEECCCCCC-
Confidence 8877764 23333311 0 111111111222233333432 34788889988888753 33 367899999999732
Q ss_pred cchHHHHHHHHHHc-CCCEEEEEe
Q 021087 274 QLWKPLSSSSVATM-AGPLVPIYQ 296 (317)
Q Consensus 274 GdfhE~ALN~Aa~~-~lPvVFV~e 296 (317)
-..|. -+..++.+ +..|.++|=
T Consensus 164 rv~~S-l~~~~~~~~g~~v~~~~P 186 (306)
T PLN02527 164 RTVRS-LAYLLAKYEDVKIYFVAP 186 (306)
T ss_pred hhHHH-HHHHHHhcCCCEEEEECC
Confidence 35677 56665666 666766663
No 151
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated
Probab=27.99 E-value=83 Score=36.45 Aligned_cols=61 Identities=10% Similarity=-0.043 Sum_probs=42.8
Q ss_pred ccCCCCCCCchhhhhHHhhhhhcCCCcEEEEEEcCCccCccchHHHHHHHHHHcCCCEEEEEecCCc
Q 021087 234 TISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNNFE 300 (317)
Q Consensus 234 ~~sg~lGtqlp~AvG~A~A~kl~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~lPvVFV~eNNgy 300 (317)
......|+.+.+++|.+-. .+++.+|.++|||..-.--. - |+-.|...+.+++++|=+|..
T Consensus 478 ~~~~~MG~eg~~~~G~a~f----~~~~hv~a~iGDgTffHSG~-~-al~~AV~~~~nit~~IL~N~~ 538 (1165)
T PRK09193 478 STFTQMGGEGVPWIGQAPF----TDEKHVFQNLGDGTYFHSGL-L-AIRAAVAAGVNITYKILYNDA 538 (1165)
T ss_pred CeeeccCCcchhhceeccc----cCCCcEEEEeccccchhcCH-H-HHHHHHhcCCCeEEEEEeCCc
Confidence 3455677777777887765 22355999999998743322 2 566777788898888888875
No 152
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=26.58 E-value=1.5e+02 Score=23.73 Aligned_cols=41 Identities=15% Similarity=0.054 Sum_probs=32.9
Q ss_pred cCCCcEEEEEEcCCccCccchHHHHHHHHHHcCCCEEEEEecCC
Q 021087 256 EKKDACAVAYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNNF 299 (317)
Q Consensus 256 ~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~lPvVFV~eNNg 299 (317)
.+++.+++++--.|.+.| .-+ ++..|...++|+|.|..|..
T Consensus 44 ~~~~d~~I~iS~sG~t~e--~~~-~~~~a~~~g~~vi~iT~~~~ 84 (126)
T cd05008 44 LDEDTLVIAISQSGETAD--TLA-ALRLAKEKGAKTVAITNVVG 84 (126)
T ss_pred CCCCcEEEEEeCCcCCHH--HHH-HHHHHHHcCCeEEEEECCCC
Confidence 356777888877887776 568 89999999999999998754
No 153
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=26.49 E-value=1.2e+02 Score=24.13 Aligned_cols=40 Identities=15% Similarity=0.081 Sum_probs=31.1
Q ss_pred CCCcEEEEEEcCCccCccchHHHHHHHHHHcCCCEEEEEecCC
Q 021087 257 KKDACAVAYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNNF 299 (317)
Q Consensus 257 g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~lPvVFV~eNNg 299 (317)
+++.+++++--.|.+. +..+ .+..|-..++|+|.|+.|..
T Consensus 52 ~~~d~vi~is~sg~~~--~~~~-~~~~ak~~g~~vi~iT~~~~ 91 (131)
T PF01380_consen 52 DPDDLVIIISYSGETR--ELIE-LLRFAKERGAPVILITSNSE 91 (131)
T ss_dssp STTEEEEEEESSSTTH--HHHH-HHHHHHHTTSEEEEEESSTT
T ss_pred cccceeEeeeccccch--hhhh-hhHHHHhcCCeEEEEeCCCC
Confidence 4567788887777664 4568 89999999999999987654
No 154
>KOG3384 consensus Selenoprotein [General function prediction only]
Probab=26.34 E-value=64 Score=28.62 Aligned_cols=31 Identities=13% Similarity=0.406 Sum_probs=22.9
Q ss_pred CceEEeCCCCCcccCCCCCCCCHHHHHHHHH
Q 021087 107 PCFRVLDDNGELIKGSDFQQVSKEVAVKMYS 137 (317)
Q Consensus 107 p~~rvld~~G~~~~~~~~~~ls~e~l~~lYr 137 (317)
|...++|+||+.-+.-...+-..|.+.+.++
T Consensus 118 P~l~llDadgk~kE~lsI~kWntdtl~eff~ 148 (154)
T KOG3384|consen 118 PVLKLLDADGKHKESLSIDKWNTDTLEEFFR 148 (154)
T ss_pred CeeEeecCCCCccceeeecccChHHHHHHHH
Confidence 6789999999986543344556788888776
No 155
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=25.34 E-value=1e+02 Score=27.12 Aligned_cols=50 Identities=16% Similarity=0.139 Sum_probs=34.9
Q ss_pred hhhHHhhhh-hcCCCcEEEEEEcCCccCccchHHHHHHHHHHcCCCEEEEEecCC
Q 021087 246 AVGVAYSLK-MEKKDACAVAYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNNF 299 (317)
Q Consensus 246 AvG~A~A~k-l~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~lPvVFV~eNNg 299 (317)
|+.+|-+.- ..++..|+++..|=|.++ ..- ++--|..-+.|||+|+-+-.
T Consensus 47 A~~mAdgyar~sg~~gv~~~t~GpG~~n---~~~-gl~~A~~~~~Pvl~i~g~~~ 97 (162)
T cd07037 47 AAFFALGLAKASGRPVAVVCTSGTAVAN---LLP-AVVEAYYSGVPLLVLTADRP 97 (162)
T ss_pred HHHHHHHHHHhhCCCEEEEECCchHHHH---HhH-HHHHHHhcCCCEEEEECCCC
Confidence 555555543 456677777777888776 235 77778888999999986543
No 156
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=25.14 E-value=1.1e+02 Score=33.48 Aligned_cols=53 Identities=8% Similarity=-0.116 Sum_probs=35.7
Q ss_pred hhhhHHhhhhhcCCCcEEEEEEcCCccCccchHHHHHHHHHHcCCCEEEEEecCCcc
Q 021087 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNNFEA 301 (317)
Q Consensus 245 ~AvG~A~A~kl~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~lPvVFV~eNNgyA 301 (317)
++||.|-++-+.|..-|+ +.+. ..-+ -.++|-.+-++..++||+|++..-|+.
T Consensus 434 haVt~AAGLA~~G~kPvv-~iys--tFlq-RAyDQI~~Dval~~lpV~~vid~aGlv 486 (701)
T PLN02225 434 HAVTFSAGLSSGGLKPFC-IIPS--AFLQ-RAYDQVVHDVDRQRKAVRFVITSAGLV 486 (701)
T ss_pred HHHHHHHHHHHCCCEEEE-Eeeh--hHHH-HHHHHHHHHHHhhcCCceEEEECCccC
Confidence 355555555556654444 4443 4444 566777888999999999999887754
No 157
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=25.08 E-value=1e+02 Score=35.73 Aligned_cols=62 Identities=11% Similarity=-0.070 Sum_probs=43.9
Q ss_pred cccCCCCCCCchhhhhHHhhhhhcCCCcEEEEEEcCCccCccchHHHHHHHHHHcCCCEEEEEecCCc
Q 021087 233 ITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNNFE 300 (317)
Q Consensus 233 ~~~sg~lGtqlp~AvG~A~A~kl~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~lPvVFV~eNNgy 300 (317)
.......|+.+..++|.+-+.. +..+|+++|||..-.--. - |+-.|...+.+++++|=+|..
T Consensus 464 ~~~~~~MG~~g~~~~G~a~~~~----~~~v~a~iGDgTf~HSG~-~-al~~AV~~~~nit~~IL~N~~ 525 (1159)
T PRK13030 464 TTGLTQMGGEGVDWIGHAPFTE----TKHVFQNLGDGTYFHSGS-L-AIRQAVAAGANITYKILYNDA 525 (1159)
T ss_pred cceeeccCccchhhceeccccC----CCCEEEEeccchhhhcCH-H-HHHHHHhcCCCeEEEEEeCCc
Confidence 3345567777888888877732 345999999998743221 2 466677778899999988885
No 158
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=25.05 E-value=91 Score=36.02 Aligned_cols=39 Identities=10% Similarity=-0.024 Sum_probs=30.5
Q ss_pred EEEEEEcCCcc-CccchHHHHHHHHHHcCCCEEEEEecCC-ccc
Q 021087 261 CAVAYTGDGGT-SEQLWKPLSSSSVATMAGPLVPIYQNNF-EAM 302 (317)
Q Consensus 261 vvv~~~GDGat-seGdfhE~ALN~Aa~~~lPvVFV~eNNg-yAI 302 (317)
-++++.|||.+ .-|- . ++-.|...+.+|.+||-||. |+-
T Consensus 953 sv~~~~GDG~~~diG~--~-~l~~~~~r~~~v~~i~~dne~Y~n 993 (1165)
T TIGR02176 953 SVWIIGGDGWAYDIGY--G-GLDHVLASGKDVNVLVMDTEVYSN 993 (1165)
T ss_pred eeEEEecchhhhccCc--c-chHHHHHcCCCeEEEEECCccccc
Confidence 58999999944 6664 3 67778889999888888887 654
No 159
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=24.52 E-value=1.4e+02 Score=29.79 Aligned_cols=49 Identities=14% Similarity=-0.082 Sum_probs=28.4
Q ss_pred hhhHHhhhhhcCCCcEEEEEEcCCccCccchHHHHHHHHHHcC--------CCEEEEEec
Q 021087 246 AVGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLSSSSVATMA--------GPLVPIYQN 297 (317)
Q Consensus 246 AvG~A~A~kl~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~--------lPvVFV~eN 297 (317)
++|.|-++-+.|..-++..++.|=. .-.++|-.|-++.++ +||+|++.+
T Consensus 86 ~vg~AaGlA~~G~~P~v~~~~~~f~---~ra~dQi~~dva~~~~~~~g~~~~pV~i~~~~ 142 (356)
T PLN02683 86 FTGIGVGAAYAGLKPVVEFMTFNFS---MQAIDHIINSAAKTNYMSAGQISVPIVFRGPN 142 (356)
T ss_pred HHHHHHHHHHCCCEEEEEEehhhHH---HHHHHHHHHHHHHhccccCCCccCCEEEEEeC
Confidence 4444444444555333322223321 244576778888777 999999988
No 160
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=24.31 E-value=1.1e+02 Score=33.34 Aligned_cols=58 Identities=14% Similarity=-0.191 Sum_probs=36.8
Q ss_pred hhhHHhhhhhcCCCcEEEEEEcCCccCccchHHHHHHHHHHcCCCEEEEEecCCccc-ccccc
Q 021087 246 AVGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNNFEAM-VLLLR 307 (317)
Q Consensus 246 AvG~A~A~kl~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~lPvVFV~eNNgyAI-StP~~ 307 (317)
++|+|-++-+.|. +.+++.|.+ ..+ -.++|-.+-++..++||+|++...|+.. ..|++
T Consensus 410 ~vg~AaGLA~~G~-kPvv~~fs~--Fl~-RA~DQI~~dval~~lpVv~v~~~aG~vg~dG~TH 468 (677)
T PLN02582 410 AVTFAAGLACEGL-KPFCAIYSS--FLQ-RGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTH 468 (677)
T ss_pred HHHHHHHHHHCCC-eEEEEecHH--HHH-HHHHHHHHHHHhcCCCEEEEEECCCcccCCCCcc
Confidence 5555555555564 444444543 333 5566677888999999999999877643 24443
No 161
>cd00198 vWFA Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains.
Probab=23.73 E-value=2.6e+02 Score=21.92 Aligned_cols=38 Identities=11% Similarity=0.130 Sum_probs=27.7
Q ss_pred CCcEEEEEEcCCccCcc--chHHHHHHHHHHcCCCEEEEEe
Q 021087 258 KDACAVAYTGDGGTSEQ--LWKPLSSSSVATMAGPLVPIYQ 296 (317)
Q Consensus 258 ~~~vvv~~~GDGatseG--dfhE~ALN~Aa~~~lPvVFV~e 296 (317)
.....+++++||....+ ...+ .+..+...+..+.+|--
T Consensus 100 ~~~~~lvvitDg~~~~~~~~~~~-~~~~~~~~~v~v~~v~~ 139 (161)
T cd00198 100 NARRVIILLTDGEPNDGPELLAE-AARELRKLGITVYTIGI 139 (161)
T ss_pred CCceEEEEEeCCCCCCCcchhHH-HHHHHHHcCCEEEEEEc
Confidence 45678899999998877 4677 77777777776555433
No 162
>cd01450 vWFA_subfamily_ECM Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=23.03 E-value=2.8e+02 Score=22.34 Aligned_cols=40 Identities=8% Similarity=-0.022 Sum_probs=29.3
Q ss_pred CCcEEEEEEcCCccCccc-hHHHHHHHHHHcCCCEEEEEecC
Q 021087 258 KDACAVAYTGDGGTSEQL-WKPLSSSSVATMAGPLVPIYQNN 298 (317)
Q Consensus 258 ~~~vvv~~~GDGatseGd-fhE~ALN~Aa~~~lPvVFV~eNN 298 (317)
..+.+++++.||..+.+. ..+ .+.-....+++++.|.-.+
T Consensus 102 ~~~~~iiliTDG~~~~~~~~~~-~~~~~~~~~v~v~~i~~g~ 142 (161)
T cd01450 102 NVPKVIIVLTDGRSDDGGDPKE-AAAKLKDEGIKVFVVGVGP 142 (161)
T ss_pred CCCeEEEEECCCCCCCCcchHH-HHHHHHHCCCEEEEEeccc
Confidence 456789999999887753 666 7777777788877765543
No 163
>cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of the beta subunits of the E1 components of: human pyruvate dehydrogenase complex (E1- PDHc), the acetoin dehydrogenase complex (ADC), and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domain
Probab=22.85 E-value=1.6e+02 Score=25.97 Aligned_cols=57 Identities=18% Similarity=-0.083 Sum_probs=32.5
Q ss_pred hhhHHhhhhhcCCCcEEEE-EEcCCccCccchHHHHHHHHHHc--------CCCEEEEEecCCccccccc
Q 021087 246 AVGVAYSLKMEKKDACAVA-YTGDGGTSEQLWKPLSSSSVATM--------AGPLVPIYQNNFEAMVLLL 306 (317)
Q Consensus 246 AvG~A~A~kl~g~~~vvv~-~~GDGatseGdfhE~ALN~Aa~~--------~lPvVFV~eNNgyAIStP~ 306 (317)
.+|+|.++-+.|. ++.++ -+++=.. -.+||-.|-++.+ ++||++++..-++.-..++
T Consensus 56 ~vg~AaGlA~~G~-~pi~~~~~a~Fl~---ra~dQi~~~~a~~~~~~~~~~~~pv~i~~~~gg~~~~G~t 121 (167)
T cd07036 56 IVGLAVGAAMNGL-RPIVEIMFADFAL---PAFDQIVNEAAKLRYMSGGQFKVPIVIRGPNGGGIGGGAQ 121 (167)
T ss_pred HHHHHHHHHHcCC-EEEEEeehHHHHH---HHHHHHHHHHHHHHHhcCCCccCCEEEEEeCCCCCCcChh
Confidence 4455555555554 33433 2554322 3456455667765 5999999977666545554
No 164
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=22.74 E-value=91 Score=33.53 Aligned_cols=32 Identities=16% Similarity=0.115 Sum_probs=24.5
Q ss_pred chHHHHHHHHHHcCCCEEEEEecCCcc--cccccc
Q 021087 275 LWKPLSSSSVATMAGPLVPIYQNNFEA--MVLLLR 307 (317)
Q Consensus 275 dfhE~ALN~Aa~~~lPvVFV~eNNgyA--IStP~~ 307 (317)
-.++ ++.+++..++||+||.-..+++ -..|++
T Consensus 434 r~~~-~ir~~a~~~lpV~~v~th~g~~~G~dG~TH 467 (653)
T TIGR00232 434 YARP-AIRLAALMKLPVIYVYTHDSIGVGEDGPTH 467 (653)
T ss_pred HHHH-HHHHHHhcCCCEEEEEeCCccCCCCCCccc
Confidence 5577 8888999999999999776654 445665
No 165
>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated
Probab=21.80 E-value=1.4e+02 Score=29.49 Aligned_cols=48 Identities=19% Similarity=0.041 Sum_probs=32.6
Q ss_pred chhhhhHHhhhhhcCCCcEEEEEEcCCccCccchHHHHHHHHHHcCCCEEEEEecCC
Q 021087 243 LPQAVGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNNF 299 (317)
Q Consensus 243 lp~AvG~A~A~kl~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~lPvVFV~eNNg 299 (317)
+..|.|+++|-. .+++.+-++..+- -|| ++++|+-..+|+|+++-+-.
T Consensus 61 ~~~a~GAs~aG~------Ra~taTSg~Gl~l--m~E-~l~~a~~~e~P~v~v~v~R~ 108 (352)
T PRK07119 61 INMVYGAAATGK------RVMTSSSSPGISL--KQE-GISYLAGAELPCVIVNIMRG 108 (352)
T ss_pred HHHHHHHHhhCC------CEEeecCcchHHH--HHH-HHHHHHHccCCEEEEEeccC
Confidence 344666666633 3666664444433 479 99999999999888776654
No 166
>PRK05899 transketolase; Reviewed
Probab=21.76 E-value=93 Score=33.04 Aligned_cols=58 Identities=10% Similarity=-0.067 Sum_probs=36.6
Q ss_pred hhhHHhhhhhcCCCcEEEEEEcCCccCccchHHHHHHHHHHcCCCEEEEEecCCccc--ccccc
Q 021087 246 AVGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNNFEAM--VLLLR 307 (317)
Q Consensus 246 AvG~A~A~kl~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~lPvVFV~eNNgyAI--StP~~ 307 (317)
++|+|-++-+.|..+.+++.+. ... .-.++ ++.+++..++||+|+....|+.. ..|++
T Consensus 379 ~vg~A~GlA~~G~~~pv~~t~~--~F~-~r~~~-qir~~~~~~~pv~~v~~~~G~~~g~~G~tH 438 (624)
T PRK05899 379 MAAIANGLALHGGFIPFGGTFL--VFS-DYARN-AIRLAALMKLPVIYVFTHDSIGVGEDGPTH 438 (624)
T ss_pred HHHHHHHHHHcCCCeEEEEEcH--HHH-HHHHH-HHHHHHhcCCCEEEEEECCCcCcCCCCCCc
Confidence 4444544445562233333221 222 46778 88889999999999999888754 45666
No 167
>PF01035 DNA_binding_1: 6-O-methylguanine DNA methyltransferase, DNA binding domain; InterPro: IPR014048 Synonym(s): 6-O-methylguanine-DNA methyltransferase, O-6-methylguanine-DNA-alkyltransferase This entry represents the DNA binding region of 6-O-methylguanine-DNA methyltransferases. The repair of DNA containing O6-alkylated guanine is carried out by DNA-[protein]-cysteine S-methyltransferase (2.1.1.63 from EC). The major mutagenic and carcinogenic effect of methylating agents in DNA is the formation of O6-alkylguanine. The alkyl group at the O-6 position is transferred to a cysteine residue in the enzyme []. This is a suicide reaction since the enzyme is irreversibly inactivated and the methylated protein accumulates as a dead-end product. Most, but not all of the methyltransferases are also able to repair O-4-methylthymine. DNA-[protein]-cysteine S-methyltransferases are widely distributed and are found in various prokaryotic and eukaryotic sources [].; GO: 0003824 catalytic activity, 0006281 DNA repair; PDB: 1SFE_A 1T39_B 1T38_A 1EH7_A 1EH6_A 1YFH_C 1EH8_A 1QNT_A 2KIM_A 2KIF_A ....
Probab=21.61 E-value=38 Score=26.75 Aligned_cols=19 Identities=32% Similarity=0.581 Sum_probs=15.8
Q ss_pred CCCCCceEEeCCCCCcccC
Q 021087 103 EKRVPCFRVLDDNGELIKG 121 (317)
Q Consensus 103 ~~~~p~~rvld~~G~~~~~ 121 (317)
...+||+||++.+|.+-..
T Consensus 48 ~~~iP~HRVv~~~G~l~~~ 66 (85)
T PF01035_consen 48 PIIIPCHRVVNSDGSLGGY 66 (85)
T ss_dssp TTTSGGGGEEBTTSBECTT
T ss_pred cCCCCeEEEECCCCCcCCC
Confidence 3579999999999998543
No 168
>cd06445 ATase The DNA repair protein O6-alkylguanine-DNA alkyltransferase (ATase; also known as AGT, AGAT and MGMT) reverses O6-alkylation DNA damage by transferring O6-alkyl adducts to an active site cysteine irreversibly, without inducing DNA strand breaks. ATases are specific for repair of guanines with O6-alkyl adducts, however human ATase is not limited to O6-methylguanine, repairing many other adducts at the O6-position of guanine as well. ATase is widely distributed among species. Most ATases have N- and C-terminal domains. The C-terminal domain contains the conserved active-site cysteine motif (PCHR), the O6-alkylguanine binding channel, and the helix-turn-helix (HTH) DNA-binding motif. The active site is located near the recognition helix of the HTH motif. While the C-terminal domain of ATase contains residues that are necessary for DNA binding and alkyl transfer, the function of the N-terminal domain is still unknown. Removal of the N-terminal domain abolishes the activity of
Probab=21.50 E-value=58 Score=25.17 Aligned_cols=18 Identities=33% Similarity=0.562 Sum_probs=15.1
Q ss_pred CCCCceEEeCCCCCcccC
Q 021087 104 KRVPCFRVLDDNGELIKG 121 (317)
Q Consensus 104 ~~~p~~rvld~~G~~~~~ 121 (317)
..+||+||++.+|.+...
T Consensus 47 ~~vP~HRVv~~~g~~~~~ 64 (79)
T cd06445 47 ILIPCHRVVRSDGGLGGY 64 (79)
T ss_pred CCCCceeEECCCCCcCCC
Confidence 479999999999988643
No 169
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=21.33 E-value=58 Score=26.96 Aligned_cols=37 Identities=11% Similarity=0.170 Sum_probs=28.1
Q ss_pred hcCCCcEEEEEEcCCccCccchHHHHHHHHHHcCCCEEE
Q 021087 255 MEKKDACAVAYTGDGGTSEQLWKPLSSSSVATMAGPLVP 293 (317)
Q Consensus 255 l~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~lPvVF 293 (317)
++..++ .+.++|.|+...|..-| ...+|..+++||+-
T Consensus 8 L~~A~r-P~il~G~g~~~~~a~~~-l~~lae~~~~Pv~~ 44 (137)
T PF00205_consen 8 LSSAKR-PVILAGRGARRSGAAEE-LRELAEKLGIPVAT 44 (137)
T ss_dssp HHH-SS-EEEEE-HHHHHTTCHHH-HHHHHHHHTSEEEE
T ss_pred HHhCCC-EEEEEcCCcChhhHHHH-HHHHHHHHCCCEEe
Confidence 344444 57778999998888888 99999999999853
No 170
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=21.22 E-value=1.6e+02 Score=25.71 Aligned_cols=50 Identities=14% Similarity=0.047 Sum_probs=35.2
Q ss_pred hhhHHhhhh-hcCCCcEEEEEEcCCccCccchHHHHHHHHHHcCCCEEEEEecCC
Q 021087 246 AVGVAYSLK-MEKKDACAVAYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNNF 299 (317)
Q Consensus 246 AvG~A~A~k-l~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~lPvVFV~eNNg 299 (317)
|+.+|.+.. ..++..|+++..|=|.++-- - ++--|..-++|||+|+-+..
T Consensus 50 A~~mA~gyar~tg~~~v~~~t~GpG~~n~~---~-~l~~A~~~~~Pvl~I~g~~~ 100 (164)
T cd07039 50 AAFAASAEAKLTGKLGVCLGSSGPGAIHLL---N-GLYDAKRDRAPVLAIAGQVP 100 (164)
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCcHHHHH---H-HHHHHHhcCCCEEEEecCCc
Confidence 444554443 44667778888888887733 4 77778888999999986554
No 171
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=20.94 E-value=1.2e+02 Score=32.84 Aligned_cols=58 Identities=12% Similarity=-0.202 Sum_probs=34.4
Q ss_pred hhhHHhhhhhcCCCcEEEEEEcCCccCccchHHHHHHHHHHcCCCEEEEEecCCccc-ccccc
Q 021087 246 AVGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNNFEAM-VLLLR 307 (317)
Q Consensus 246 AvG~A~A~kl~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~lPvVFV~eNNgyAI-StP~~ 307 (317)
+||+|-++-+.|. +++++.|.+ ..+ -.++|=.|.++..++||+|++...|+.. ..|++
T Consensus 411 ~Vg~AaGLA~~G~-rPvv~~fs~--Fl~-RA~DQI~~dva~~~lpV~~v~~~aG~~g~dG~TH 469 (641)
T PLN02234 411 AVTFAAGLACEGL-KPFCTIYSS--FMQ-RAYDQVVHDVDLQKLPVRFAIDRAGLMGADGPTH 469 (641)
T ss_pred HHHHHHHHHHCCC-eEEEEehHH--HHH-HHHHHHHHHHhhcCCCEEEEEeCCccCCCCCccc
Confidence 5555555555554 334444433 222 3345455788999999999998888532 34443
No 172
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.
Probab=20.83 E-value=1.5e+02 Score=26.48 Aligned_cols=41 Identities=7% Similarity=0.099 Sum_probs=30.8
Q ss_pred hhcCCCcEEEEEEcCCccCccchHHHHHHHHHHcCCCEEEEEe
Q 021087 254 KMEKKDACAVAYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQ 296 (317)
Q Consensus 254 kl~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~lPvVFV~e 296 (317)
.+++.++ .+.++|-|+.+.+..-+ ...+|-.+++||+--..
T Consensus 23 lLk~AKR-PvIivG~ga~~~~a~e~-l~~laEklgiPVvtT~~ 63 (162)
T TIGR00315 23 MIKRAKR-PLLIVGPENLEDEEKEL-IVKFIEKFDLPVVATAD 63 (162)
T ss_pred HHHcCCC-cEEEECCCcCcccHHHH-HHHHHHHHCCCEEEcCc
Confidence 3444444 66677999988887777 89999999999875443
No 173
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=20.55 E-value=1.9e+02 Score=23.21 Aligned_cols=41 Identities=15% Similarity=0.150 Sum_probs=31.5
Q ss_pred cCCCcEEEEEEcCCccCccchHHHHHHHHHHcCCCEEEEEecCC
Q 021087 256 EKKDACAVAYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNNF 299 (317)
Q Consensus 256 ~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~lPvVFV~eNNg 299 (317)
.+++.+++++---|.+. +.-+ ++..|...++|+|.++.|..
T Consensus 45 ~~~~d~vi~iS~sG~t~--~~~~-~~~~a~~~g~~vi~iT~~~~ 85 (128)
T cd05014 45 VTPGDVVIAISNSGETD--ELLN-LLPHLKRRGAPIIAITGNPN 85 (128)
T ss_pred CCCCCEEEEEeCCCCCH--HHHH-HHHHHHHCCCeEEEEeCCCC
Confidence 35677788776666554 4568 89999999999999999865
No 174
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=20.33 E-value=1.5e+02 Score=31.34 Aligned_cols=59 Identities=12% Similarity=-0.066 Sum_probs=36.3
Q ss_pred hhhHHhhhhhcCCCcEEEEEEcCCccCccchHHHHHHHHHHcCCCEEEEEecCCccccccccc
Q 021087 246 AVGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNNFEAMVLLLRV 308 (317)
Q Consensus 246 AvG~A~A~kl~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~lPvVFV~eNNgyAIStP~~~ 308 (317)
++|.|-++-+.|.. .+++.|.+= -+ -.++|-.|-++..++||+|++..-++.-..|++.
T Consensus 332 ~v~~AaGlA~~G~~-Pvv~~fs~F--l~-ra~dQi~~d~a~~~lpv~~~~~~~g~~~dG~TH~ 390 (581)
T PRK12315 332 SVAFASGIAANGAR-PVIFVNSTF--LQ-RAYDQLSHDLAINNNPAVMIVFGGSISGNDVTHL 390 (581)
T ss_pred HHHHHHHHHHCcCe-EEEEeeHHH--HH-HHHHHHHHHHHhcCCCEEEEEECCcccCCCcccc
Confidence 44555555555643 344555542 12 2235556668999999999999777665566653
No 175
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=20.28 E-value=1.2e+02 Score=26.39 Aligned_cols=50 Identities=20% Similarity=-0.002 Sum_probs=32.3
Q ss_pred hhhHHhhhhhcCCCcEEEEEEcCCccCccchHHHHHHHHHHcCCCEEEEEecCC
Q 021087 246 AVGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNNF 299 (317)
Q Consensus 246 AvG~A~A~kl~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~lPvVFV~eNNg 299 (317)
|+.+|.+.-+..+..|+++.-|=|.++-- - ++--|..-+.|||+|+-+..
T Consensus 47 A~~mA~gyar~t~~gv~~~t~GpG~~n~~---~-gl~~A~~~~~Pvl~i~g~~~ 96 (162)
T cd07038 47 AGYAADGYARVKGLGALVTTYGVGELSAL---N-GIAGAYAEHVPVVHIVGAPS 96 (162)
T ss_pred HHHHHHHHHHhhCCEEEEEcCCccHHHHH---H-HHHHHHHcCCCEEEEecCCC
Confidence 44444443333335555665688877644 4 77788888999999986654
No 176
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=20.26 E-value=75 Score=26.42 Aligned_cols=39 Identities=10% Similarity=0.126 Sum_probs=28.0
Q ss_pred EEEEEEcCCccCccchHHHHHHHHHHcCCCEEEEE--ecCCccc
Q 021087 261 CAVAYTGDGGTSEQLWKPLSSSSVATMAGPLVPIY--QNNFEAM 302 (317)
Q Consensus 261 vvv~~~GDGatseGdfhE~ALN~Aa~~~lPvVFV~--eNNgyAI 302 (317)
-.|++.||....|| |+ ..+.-.+...|.+.|+ .+|.+.+
T Consensus 52 ~fv~w~~dv~~~eg--~~-la~~l~~~~~P~~~~l~~~~~~~~v 92 (116)
T cd02991 52 RMLFWACSVAKPEG--YR-VSQALRERTYPFLAMIMLKDNRMTI 92 (116)
T ss_pred CEEEEEEecCChHH--HH-HHHHhCCCCCCEEEEEEecCCceEE
Confidence 36899999999988 77 6666667788965555 3555543
No 177
>PTZ00089 transketolase; Provisional
Probab=20.18 E-value=1.2e+02 Score=32.57 Aligned_cols=44 Identities=7% Similarity=-0.266 Sum_probs=30.0
Q ss_pred cEEEEEEcCCccCccchHHHHHHHHHHcCCCEEEEEecCCcc--cccccc
Q 021087 260 ACAVAYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNNFEA--MVLLLR 307 (317)
Q Consensus 260 ~vvv~~~GDGatseGdfhE~ALN~Aa~~~lPvVFV~eNNgyA--IStP~~ 307 (317)
..+++.|. ...+ -.++ .+..++..++||+||+...+.+ -..|++
T Consensus 429 ~P~~~tf~--~Fl~-Ra~d-qir~~al~~lpV~~v~thdg~~~g~DG~TH 474 (661)
T PTZ00089 429 IPFGATFL--NFYG-YALG-AVRLAALSHHPVIYVATHDSIGLGEDGPTH 474 (661)
T ss_pred eEEEEehH--HHHH-HHHH-HHHHHHhcCCCeEEEEeCCceecCCCCCCc
Confidence 33444443 5555 7789 6999999999999999666644 444443
Done!