Query 021087
Match_columns 317
No_of_seqs 262 out of 1648
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 12:33:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021087.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021087hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bfd_A 2-oxoisovalerate dehydr 100.0 2.4E-58 8.2E-63 452.2 23.9 235 80-315 5-239 (400)
2 1qs0_A 2-oxoisovalerate dehydr 100.0 2.4E-51 8.2E-56 403.8 21.1 209 105-315 50-259 (407)
3 1w85_A Pyruvate dehydrogenase 100.0 1.4E-48 4.7E-53 379.4 19.2 202 104-315 18-219 (368)
4 2ozl_A PDHE1-A type I, pyruvat 100.0 1.1E-48 3.8E-53 380.0 18.4 191 122-315 26-217 (365)
5 1umd_A E1-alpha, 2-OXO acid de 100.0 3.4E-47 1.2E-51 368.3 22.7 210 104-315 11-221 (367)
6 2jgd_A 2-oxoglutarate dehydrog 100.0 8.6E-37 2.9E-41 325.8 9.6 204 106-313 170-406 (933)
7 2yic_A 2-oxoglutarate decarbox 100.0 2.7E-36 9.3E-41 320.0 7.8 201 106-311 90-332 (868)
8 2xt6_A 2-oxoglutarate decarbox 100.0 1.2E-35 3.9E-40 321.9 9.6 200 106-311 335-577 (1113)
9 2o1s_A 1-deoxy-D-xylulose-5-ph 99.9 2.1E-26 7.3E-31 235.7 8.1 182 107-309 6-192 (621)
10 2o1x_A 1-deoxy-D-xylulose-5-ph 99.9 1.3E-24 4.5E-29 222.9 6.8 171 121-309 19-194 (629)
11 3rim_A Transketolase, TK; TPP, 99.8 1.9E-19 6.6E-24 187.5 12.3 160 141-310 29-219 (700)
12 1r9j_A Transketolase; domains, 99.8 1.5E-18 5.3E-23 179.7 12.6 163 139-310 10-199 (673)
13 3mos_A Transketolase, TK; thia 99.8 4.2E-18 1.4E-22 174.9 14.1 178 126-312 4-197 (616)
14 1gpu_A Transketolase; transfer 99.7 4.3E-18 1.5E-22 176.5 11.3 163 139-310 12-199 (680)
15 1itz_A Transketolase; calvin c 99.7 8.4E-18 2.9E-22 174.2 12.4 176 123-310 7-210 (675)
16 3kom_A Transketolase; rossmann 99.7 9.5E-18 3.3E-22 173.8 10.5 163 139-310 10-199 (663)
17 3l84_A Transketolase; TKT, str 99.7 1.1E-17 3.9E-22 172.5 10.0 162 139-310 10-194 (632)
18 3uk1_A Transketolase; structur 99.7 1.6E-17 5.5E-22 173.4 11.1 163 139-310 49-238 (711)
19 2e6k_A Transketolase; structur 99.7 1.7E-17 5.9E-22 171.1 10.9 163 139-310 12-201 (651)
20 2qtc_A Pyruvate dehydrogenase 99.7 4.2E-17 1.4E-21 173.8 13.0 163 139-308 82-270 (886)
21 2r8o_A Transketolase 1, TK 1; 99.7 3E-17 1E-21 169.8 11.3 163 139-310 8-197 (669)
22 3m49_A Transketolase; alpha-be 99.7 4.4E-17 1.5E-21 169.6 10.2 160 140-309 35-222 (690)
23 3ahc_A Phosphoketolase, xylulo 98.9 1.1E-09 3.9E-14 116.1 8.2 83 221-308 159-245 (845)
24 2vk8_A Pyruvate decarboxylase 98.7 2E-09 6.8E-14 108.0 1.7 68 235-305 411-479 (563)
25 4feg_A Pyruvate oxidase; carba 98.7 3.8E-09 1.3E-13 107.3 2.2 61 235-302 418-479 (603)
26 1q6z_A BFD, BFDC, benzoylforma 98.6 1.2E-08 4.2E-13 101.5 3.0 63 237-306 401-464 (528)
27 2uz1_A Benzaldehyde lyase; thi 98.6 1.4E-08 4.8E-13 102.0 2.8 66 236-306 418-484 (563)
28 2pan_A Glyoxylate carboligase; 98.6 1.4E-08 5E-13 103.0 2.2 65 234-305 439-504 (616)
29 1v5e_A Pyruvate oxidase; oxido 98.5 2.2E-08 7.7E-13 101.4 3.1 65 235-306 411-476 (590)
30 2vbf_A Branched-chain alpha-ke 98.5 4.4E-08 1.5E-12 98.5 3.4 65 234-305 422-487 (570)
31 2vbi_A Pyruvate decarboxylase; 98.5 4.4E-08 1.5E-12 98.4 3.1 65 235-306 407-472 (566)
32 1ybh_A Acetolactate synthase, 98.5 4.2E-08 1.4E-12 99.2 3.0 63 235-304 424-487 (590)
33 1ozh_A ALS, acetolactate synth 98.5 5.1E-08 1.7E-12 98.2 2.7 65 235-306 418-483 (566)
34 2wvg_A PDC, pyruvate decarboxy 98.4 6.1E-08 2.1E-12 97.4 3.3 65 235-306 411-476 (568)
35 2iht_A Carboxyethylarginine sy 98.4 5.2E-08 1.8E-12 98.2 2.5 65 235-306 434-499 (573)
36 1ovm_A Indole-3-pyruvate decar 98.4 4.1E-08 1.4E-12 98.1 1.7 63 235-304 406-469 (552)
37 2pgn_A Cyclohexane-1,2-dione h 98.4 5.3E-08 1.8E-12 98.5 2.2 64 236-306 423-487 (589)
38 1t9b_A Acetolactate synthase, 98.4 1.4E-07 4.7E-12 97.7 3.5 64 235-305 511-575 (677)
39 2nxw_A Phenyl-3-pyruvate decar 98.3 1.7E-07 5.8E-12 94.4 1.6 62 236-304 421-483 (565)
40 2x7j_A 2-succinyl-5-enolpyruvy 98.3 3E-07 1E-11 93.3 3.3 60 237-304 455-515 (604)
41 3eya_A Pyruvate dehydrogenase 98.3 3.4E-07 1.2E-11 91.7 3.3 63 235-304 404-467 (549)
42 2q28_A Oxalyl-COA decarboxylas 98.2 4.6E-07 1.6E-11 90.9 3.5 61 234-302 418-480 (564)
43 3hww_A 2-succinyl-5-enolpyruvy 98.2 3.7E-07 1.3E-11 91.8 2.4 61 235-304 415-476 (556)
44 2c31_A Oxalyl-COA decarboxylas 98.2 4.9E-07 1.7E-11 90.8 3.0 58 234-299 423-480 (568)
45 3lq1_A 2-succinyl-5-enolpyruvy 97.9 3.3E-06 1.1E-10 85.2 2.6 56 240-304 439-495 (578)
46 2c42_A Pyruvate-ferredoxin oxi 91.4 0.057 2E-06 59.7 1.5 41 259-302 953-995 (1231)
47 3mos_A Transketolase, TK; thia 59.1 18 0.00062 36.8 7.1 53 246-302 367-419 (616)
48 2o1s_A 1-deoxy-D-xylulose-5-ph 56.9 12 0.00042 37.9 5.4 59 246-308 373-432 (621)
49 2e6k_A Transketolase; structur 45.6 27 0.00092 35.7 5.9 58 246-307 409-468 (651)
50 1itz_A Transketolase; calvin c 44.2 26 0.0009 36.0 5.5 58 246-307 426-486 (675)
51 2r8o_A Transketolase 1, TK 1; 43.5 32 0.0011 35.3 6.1 58 246-307 414-473 (669)
52 3ibs_A Conserved hypothetical 41.5 37 0.0013 28.2 5.3 55 240-295 91-146 (218)
53 2khz_A C-MYC-responsive protei 40.1 27 0.00092 29.4 4.1 39 255-298 75-113 (165)
54 1gpu_A Transketolase; transfer 39.4 30 0.001 35.7 5.0 58 246-307 421-481 (680)
55 2o1x_A 1-deoxy-D-xylulose-5-ph 39.1 17 0.00059 36.9 3.2 60 246-309 376-436 (629)
56 3ehd_A Uncharacterized conserv 38.0 27 0.00093 29.8 3.8 43 255-301 67-110 (162)
57 2fwh_A Thiol:disulfide interch 33.8 51 0.0018 25.4 4.6 36 103-138 89-125 (134)
58 1ik6_A Pyruvate dehydrogenase; 32.9 44 0.0015 31.7 4.8 50 246-299 110-168 (369)
59 2x5n_A SPRPN10, 26S proteasome 32.6 35 0.0012 29.2 3.7 35 259-294 107-141 (192)
60 1r9j_A Transketolase; domains, 31.6 66 0.0022 33.1 6.1 58 246-307 414-473 (673)
61 3f9u_A Putative exported cytoc 28.8 86 0.0029 25.0 5.3 35 104-139 129-164 (172)
62 2ozl_B PDHE1-B, pyruvate dehyd 28.6 34 0.0011 32.1 3.1 57 246-307 74-140 (341)
63 1zzo_A RV1677; thioredoxin fol 27.0 43 0.0015 24.8 2.9 34 104-139 100-133 (136)
64 1lu4_A Soluble secreted antige 24.8 52 0.0018 24.4 3.1 35 103-139 97-134 (136)
65 4fyk_A Deoxyribonucleoside 5'- 24.4 75 0.0026 26.9 4.2 34 261-298 71-104 (152)
66 3kom_A Transketolase; rossmann 23.5 94 0.0032 32.0 5.6 58 246-307 415-474 (663)
67 3or5_A Thiol:disulfide interch 23.1 76 0.0026 24.5 3.9 36 103-139 114-149 (165)
68 2lja_A Putative thiol-disulfid 23.0 81 0.0028 24.1 4.0 35 104-139 107-141 (152)
69 4evm_A Thioredoxin family prot 22.8 52 0.0018 24.1 2.7 34 104-138 103-136 (138)
70 1qs0_B 2-oxoisovalerate dehydr 22.1 31 0.0011 32.0 1.6 56 246-306 64-128 (338)
71 1sen_A Thioredoxin-like protei 21.4 1.4E+02 0.0048 24.0 5.3 36 104-139 102-146 (164)
72 3fk8_A Disulphide isomerase; A 21.1 1.1E+02 0.0036 23.1 4.2 36 104-139 90-131 (133)
73 1n3y_A Integrin alpha-X; alpha 20.8 1.9E+02 0.0066 23.3 6.1 35 259-294 110-146 (198)
74 2ju5_A Thioredoxin disulfide i 20.8 84 0.0029 24.9 3.7 35 103-139 114-150 (154)
No 1
>2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ...
Probab=100.00 E-value=2.4e-58 Score=452.17 Aligned_cols=235 Identities=40% Similarity=0.654 Sum_probs=226.0
Q ss_pred cccccCCCCccCccccccccCCCCCCCCceEEeCCCCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Q 021087 80 QVLDFPGGKVGYTSEMRFIPESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFS 159 (317)
Q Consensus 80 ~~~~f~~~~~~~~~~~~~~~~~~~~~~p~~rvld~~G~~~~~~~~~~ls~e~l~~lYr~M~~~R~~D~~~~~lqrqGrig 159 (317)
+.++|||++++||++|+|+++.....+|+|||||+||+++++...+.+++|+++++||.|+++|.||+++.++++||||+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~e~~~~~y~~M~~~r~fe~~~~~~~~~gri~ 84 (400)
T 2bfd_A 5 DKPQFPGASAEFIDKLEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQRQGRIS 84 (400)
T ss_dssp -CCCCTTCCCCCCSSCCCCCCCCSSCSCEECSBCTTSCBSCGGGCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSS
T ss_pred cCCCCCCCCcccccceeeccCcccCCCCeeEEECCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 47899999999999999999988889999999999999998876789999999999999999999999999999999999
Q ss_pred ccccCCchHHHHHHHHhccCCCCeeecCCchHHHHHHhCCCHHHHHHHHhhCCCCCCCCCCCCcccCCCCCcccccCCCC
Q 021087 160 FYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPI 239 (317)
Q Consensus 160 fy~~~~GqEA~~VG~a~AL~~~D~v~~~YR~~g~~l~rG~~l~~~~~q~~G~~~g~~kGr~mp~H~~s~~~~i~~~sg~l 239 (317)
||+++.||||++||++.+|+++|+|+++||+|++++++|+++.++|++++|+.+|+++|+++++|+++++.++++.+|++
T Consensus 85 ~~~~~~GqEa~~vg~~~al~~~D~v~~~yR~~~~~~~~G~~~~~~l~e~~g~~~g~~~G~~~~~H~~~~~~~~~~~~g~l 164 (400)
T 2bfd_A 85 FYMTNYGEEGTHVGSAAALDNTDLVFGQAREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPL 164 (400)
T ss_dssp CCCCCTTCHHHHHHHHHTSCTTSEEECCSCCHHHHHHTTCCHHHHHHHHHTCTTCTTTTCSCSSCCCBTTTTBCCCCSST
T ss_pred eeecCCChHHHHHHHHHhcCCCCEEEecCcCHHHHHHcCCCHHHHHHHhcCCCCCCCCCCCCCcCCcccccCccccCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhhhhHHhhhhhcCCCcEEEEEEcCCccCccchHHHHHHHHHHcCCCEEEEEecCCccccccccccccCccc
Q 021087 240 ATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNNFEAMVLLLRVVHMVSEA 315 (317)
Q Consensus 240 Gtqlp~AvG~A~A~kl~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~lPvVFV~eNNgyAIStP~~~~~~~~~~ 315 (317)
|+++|+|+|+|+|.|+++++++|||++|||++++|.||| +||+|+.|++||||||+||+|+|++|+..+.+.+++
T Consensus 165 G~~lp~AvG~AlA~~~~~~~~~vv~~~GDGa~~~G~~~E-al~~A~~~~lpvi~vv~NN~~~i~~~~~~~~~~~d~ 239 (400)
T 2bfd_A 165 ATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHA-GFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGI 239 (400)
T ss_dssp TTHHHHHHHHHHHHHHHTCCCCEEEEEETTGGGSHHHHH-HHHHHHHTTCCEEEEEEECSEETTEEGGGTCSSSTT
T ss_pred cccccHHHHHHHhhhhhCCCCeEEEEECchhhhcChHHH-HHHHHHHHCcCEEEEEECCceeeeecccccCCCCCH
Confidence 999999999999999999999999999999999999999 999999999999999999999999999887765554
No 2
>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A
Probab=100.00 E-value=2.4e-51 Score=403.81 Aligned_cols=209 Identities=30% Similarity=0.446 Sum_probs=199.7
Q ss_pred CCCceEEeCCCCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCchHHHHHHHHhccCCCCee
Q 021087 105 RVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFI 184 (317)
Q Consensus 105 ~~p~~rvld~~G~~~~~~~~~~ls~e~l~~lYr~M~~~R~~D~~~~~lqrqGrigfy~~~~GqEA~~VG~a~AL~~~D~v 184 (317)
.+|+|||||++|+++++ ..+.+++|+++++||.|+++|.||+++..+++||||+||+++.||||++||++++|+++|+|
T Consensus 50 ~~~~~~~ld~~g~~~~~-~~~~~~~e~~~~~y~~M~~~R~fe~~~~~~~~qgr~~~~~~~~GqEA~~vg~~~al~~~D~v 128 (407)
T 1qs0_A 50 SYSLVRVLDEQGDAQGP-WAEDIDPQILRQGMRAMLKTRIFDSRMVVAQRQKKMSFYMQSLGEEAIGSGQALALNRTDMC 128 (407)
T ss_dssp HTSCBCCBCTTSCBCSG-GGSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCCCCTTTHHHHHHHHHHSCTTSEE
T ss_pred CCCeEEEECCCCCCCCc-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCcCCCChHHHHHHHHHhcCCCCEE
Confidence 47889999999999875 45789999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCchHHHHHHhCCCHHHHHHHHhhCCCCCCCCCCCCcccCCCCCcccccCCCCCCCchhhhhHHhhhhhcCCCcEEEE
Q 021087 185 LPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVA 264 (317)
Q Consensus 185 ~~~YR~~g~~l~rG~~l~~~~~q~~G~~~g~~kGr~mp~H~~s~~~~i~~~sg~lGtqlp~AvG~A~A~kl~g~~~vvv~ 264 (317)
+++||+|+++|++|+++.++|++++|+.+|.+||+++++||++++.++++.+|++|+++|+|+|+|+|.|+++.+++|||
T Consensus 129 ~~~yR~~~~~l~~g~~~~~i~~el~g~~~~~~~G~g~~~h~~~~~~~~~~~~g~lG~~lp~AvGaA~A~k~~~~~~~vv~ 208 (407)
T 1qs0_A 129 FPTYRQQSILMARDVSLVEMICQLLSNERDPLKGRQLPIMYSVREAGFFTISGNLATQFVQAVGWAMASAIKGDTKIASA 208 (407)
T ss_dssp ECCSSCHHHHHHTTCCHHHHHHHHHTCTTCTTTTCSCTTCCCBGGGTBCCCCSSSSHHHHHHHHHHHHHHHTTCCCCEEE
T ss_pred EecccchHHHHhcCCCHHHHHHHHhCCCCCCCCCCCceeecchhccCccccccccccchhHHHHHHHHHHHhCCCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCccCccchHHHHHHHHHHcCCCEEEEEecCCccccccccccc-cCccc
Q 021087 265 YTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNNFEAMVLLLRVVH-MVSEA 315 (317)
Q Consensus 265 ~~GDGatseGdfhE~ALN~Aa~~~lPvVFV~eNNgyAIStP~~~~~-~~~~~ 315 (317)
++|||++++|.||| +||+|+.|++||||||+||+|+|++++..+. ...++
T Consensus 209 i~GDGa~~~G~~~E-al~~A~~~~lpvi~Vv~NN~~gi~~~~~~~~~~~~d~ 259 (407)
T 1qs0_A 209 WIGDGATAESDFHT-ALTFAHVYRAPVILNVVNNQWAISTFQAIAGGESTTF 259 (407)
T ss_dssp EEETGGGGSHHHHH-HHHHHHHHTCCEEEEEEECSEETTEEGGGGTTTTCCS
T ss_pred EECCchhhcChHHH-HHHHHHHHCcCEEEEEECCCcceeeccccccCCCCCH
Confidence 99999999999999 9999999999999999999999999987665 44554
No 3
>1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A*
Probab=100.00 E-value=1.4e-48 Score=379.39 Aligned_cols=202 Identities=32% Similarity=0.477 Sum_probs=190.1
Q ss_pred CCCCceEEeCCCCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCchHHHHHHHHhccCCCCe
Q 021087 104 KRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDF 183 (317)
Q Consensus 104 ~~~p~~rvld~~G~~~~~~~~~~ls~e~l~~lYr~M~~~R~~D~~~~~lqrqGrigfy~~~~GqEA~~VG~a~AL~~~D~ 183 (317)
..+|+|||||++|+++++...+.+++|+++++|+.|+++|.||+++.++++|||||||+++.||||++||++.+|+++|+
T Consensus 18 ~~~~~~~~l~~~g~~~~~~~~~~l~~e~l~~~y~~M~~~R~fe~~~~~~~~qgr~g~~~~~~G~Ea~~vg~~~~l~~~D~ 97 (368)
T 1w85_A 18 EQFPTFQILNEEGEVVNEEAMPELSDEQLKELMRRMVYTRILDQRSISLNRQGRLGFYAPTAGQEASQIASHFALEKEDF 97 (368)
T ss_dssp HTCCEECSBCTTSCBSCGGGCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCSCCCCTTCHHHHHHHHHTCCTTCE
T ss_pred CCCCeeEEECCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccCCCCCCHHHHHHHHHHhcCCcCE
Confidence 57899999999999998766788999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCchHHHHHHhCCCHHHHHHHHhhCCCCCCCCCCCCcccCCCCCcccccCCCCCCCchhhhhHHhhhhhcCCCcEEE
Q 021087 184 ILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAV 263 (317)
Q Consensus 184 v~~~YR~~g~~l~rG~~l~~~~~q~~G~~~g~~kGr~mp~H~~s~~~~i~~~sg~lGtqlp~AvG~A~A~kl~g~~~vvv 263 (317)
|+++||+|++++++|.++.++|++++|+.+ |+.| | ++.++.+.+|++|+++|+|+|+|+|.|+++.+++||
T Consensus 98 v~~~~R~~~~~~~~G~~~~~~~~el~G~~~----G~~~--h---~~~~~~~~~g~lG~~lp~AvG~A~A~~~~~~~~~vv 168 (368)
T 1w85_A 98 ILPGYRDVPQIIWHGLPLYQAFLFSRGHFH----GNQI--P---EGVNVLPPQIIIGAQYIQAAGVALGLKMRGKKAVAI 168 (368)
T ss_dssp EECCSSCHHHHHHTTCCHHHHHHHHHTCGG----GGCC--C---TTCCBCCCCCSTTHHHHHHHHHHHHHHHTTCSCCEE
T ss_pred EEecchhHHHHHhcCCCHHHHHHHHCCCCC----CCCC--C---cccccCCCccccCccccHHHHHHHHhHhhCCCCeEE
Confidence 999999999999999999999999999875 4444 5 567899999999999999999999999999999999
Q ss_pred EEEcCCccCccchHHHHHHHHHHcCCCEEEEEecCCccccccccccccCccc
Q 021087 264 AYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNNFEAMVLLLRVVHMVSEA 315 (317)
Q Consensus 264 ~~~GDGatseGdfhE~ALN~Aa~~~lPvVFV~eNNgyAIStP~~~~~~~~~~ 315 (317)
|++|||++++|.||| +||+|+.|++||||||+||+|+|++|+..+.+.+++
T Consensus 169 ~i~GDGa~~~G~~~E-al~~A~~~~lpvi~vv~NN~~gi~~~~~~~~~~~d~ 219 (368)
T 1w85_A 169 TYTGDGGTSQGDFYE-GINFAGAFKAPAIFVVQNNRFAISTPVEKQTVAKTL 219 (368)
T ss_dssp EEEETGGGGSHHHHH-HHHHHHHTTCCEEEEEEECSEETTEEGGGTCSCSCS
T ss_pred EEEchhhhhhcHHHH-HHHHHHHHCcCEEEEEEcCCccceeccccccCCCCH
Confidence 999999999999999 999999999999999999999999998877765554
No 4
>2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A*
Probab=100.00 E-value=1.1e-48 Score=379.99 Aligned_cols=191 Identities=21% Similarity=0.281 Sum_probs=181.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc-cccccCCchHHHHHHHHhccCCCCeeecCCchHHHHHHhCCC
Q 021087 122 SDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRF-SFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYT 200 (317)
Q Consensus 122 ~~~~~ls~e~l~~lYr~M~~~R~~D~~~~~lqrqGri-gfy~~~~GqEA~~VG~a~AL~~~D~v~~~YR~~g~~l~rG~~ 200 (317)
...+.+++|+++++||.|+++|.||+++.++||||+| ||||++.||||++||++++|+++|+|+++||+|+++++||++
T Consensus 26 ~~~~~l~~e~l~~~yr~M~~~R~~e~~~~~l~~~g~i~gf~~~~~GqEa~~vg~~~al~~~D~i~~~yR~~~~~~~~G~~ 105 (365)
T 2ozl_A 26 PVTTVLTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGINPTDHLITAYRAHGFTFTRGLS 105 (365)
T ss_dssp CSEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCSCCCCCTTCHHHHHHHHHTSCTTSEEECCSCCHHHHHHTTCC
T ss_pred cccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCCChHHHHHHHHHhhCCCCEEehHHHHHHHHHhcCCC
Confidence 3456799999999999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCCCCCCCCCCcccCCCCCcccccCCCCCCCchhhhhHHhhhhhcCCCcEEEEEEcCCccCccchHHHH
Q 021087 201 LQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLS 280 (317)
Q Consensus 201 l~~~~~q~~G~~~g~~kGr~mp~H~~s~~~~i~~~sg~lGtqlp~AvG~A~A~kl~g~~~vvv~~~GDGatseGdfhE~A 280 (317)
+.++|+|++|+.+|+++|+++++|+.+ .++++.++++|+++|+|+|+|+|.|+++.+++|||++|||++++|.||| +
T Consensus 106 ~~~i~~e~~g~~~g~~~g~gg~~H~~~--~~~~~~~g~~G~~lp~A~G~A~A~~~~~~~~~vv~~~GDGa~~~G~~~E-a 182 (365)
T 2ozl_A 106 VREILAELTGRKGGCAKGKGGSMHMYA--KNFYGGNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFE-A 182 (365)
T ss_dssp HHHHHHHHTTCTTSTTTTSSCTTCCCB--TTBCCCCCSTTTHHHHHHHHHHHHHHHTCCCCEEEEEETTGGGCHHHHH-H
T ss_pred HHHHHHHHcCCCCCCCCCCCCCCCcCc--cccCCCcchhhhhhHHHHHHHHHHHhcCCCceEEEEECchhhhccHHHH-H
Confidence 999999999999999999999999965 4899999999999999999999999999999999999999999999999 9
Q ss_pred HHHHHHcCCCEEEEEecCCccccccccccccCccc
Q 021087 281 SSSVATMAGPLVPIYQNNFEAMVLLLRVVHMVSEA 315 (317)
Q Consensus 281 LN~Aa~~~lPvVFV~eNNgyAIStP~~~~~~~~~~ 315 (317)
||+|++|++||||||+||+|+|+||...+...+++
T Consensus 183 ln~A~~~~lpvi~vv~NN~~g~~t~~~~~~~~~~~ 217 (365)
T 2ozl_A 183 YNMAALWKLPCIFICENNRYGMGTSVERAAASTDY 217 (365)
T ss_dssp HHHHHHTTCCEEEEEEECSEETTEEHHHHCSCCCG
T ss_pred HHHHHHHCcCEEEEEECCCcccCCCcccccCCCCH
Confidence 99999999999999999999999998776655554
No 5
>1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A*
Probab=100.00 E-value=3.4e-47 Score=368.34 Aligned_cols=210 Identities=33% Similarity=0.490 Sum_probs=200.7
Q ss_pred CCCCceEEeCCCCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCchHHHHHHHHhccCCC-C
Q 021087 104 KRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSAD-D 182 (317)
Q Consensus 104 ~~~p~~rvld~~G~~~~~~~~~~ls~e~l~~lYr~M~~~R~~D~~~~~lqrqGrigfy~~~~GqEA~~VG~a~AL~~~-D 182 (317)
..+|+|||||++|+++++ ..+.+++|+++++|+.|+++|.||+++..+++||++||++++.|||++++|...+|+++ |
T Consensus 11 ~~~~~~~~l~~~g~~~~~-~~~~l~~~~l~~l~~~m~~~R~~~~~~~~~~~~G~~g~~~~~~G~ea~~~~~~~~l~~~rD 89 (367)
T 1umd_A 11 FTEEPIRLIGEEGEWLGD-FPLDLEGEKLRRLYRDMLAARMLDERYTILIRTGKTSFIAPAAGHEAAQVAIAHAIRPGFD 89 (367)
T ss_dssp SCSSCBCCBCTTSCBCCS-SCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCCCCCTTCHHHHHHHHHHSCTTTS
T ss_pred CCCCeEEEECCCCCCCCc-cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccCCCCCcCHHHHHHHHHHHcCCCCc
Confidence 568999999999999887 56789999999999999999999999999999999999999999999999999999998 9
Q ss_pred eeecCCchHHHHHHhCCCHHHHHHHHhhCCCCCCCCCCCCcccCCCCCcccccCCCCCCCchhhhhHHhhhhhcCCCcEE
Q 021087 183 FILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACA 262 (317)
Q Consensus 183 ~v~~~YR~~g~~l~rG~~l~~~~~q~~G~~~g~~kGr~mp~H~~s~~~~i~~~sg~lGtqlp~AvG~A~A~kl~g~~~vv 262 (317)
+|+++||+|++++.+|+++.++|++++|+.+|+++|+++++|+++++.++++.++++|+++|+|+|+|+|.|+++.+++|
T Consensus 90 ~i~~s~r~~~~~~~~G~~~~~~l~~~~g~~~g~~~G~~~~~h~~~~~~~~~~~~g~lG~~l~~a~G~A~a~k~~~~~~~v 169 (367)
T 1umd_A 90 WVFPYYRDHGLALALGIPLKELLGQMLATKADPNKGRQMPEHPGSKALNFFTVASPIASHVPPAAGAAISMKLLRTGQVA 169 (367)
T ss_dssp EEECCTTTHHHHHHHTCCHHHHHHHHHTBTTCTTTTCSCSSCCCBTTTTBCCCCSSTTTTHHHHHHHHHHHHHTTCCCCE
T ss_pred EEEeCcHHHHHHHHcCCCHHHHHHHHhCCCCCCCCCCCCCCCCcccccCcCCCCchhhhhhhHHHHHHHHHHHhCCCCeE
Confidence 99999999999999999999999999999999999999999999989999999999999999999999999999999999
Q ss_pred EEEEcCCccCccchHHHHHHHHHHcCCCEEEEEecCCccccccccccccCccc
Q 021087 263 VAYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNNFEAMVLLLRVVHMVSEA 315 (317)
Q Consensus 263 v~~~GDGatseGdfhE~ALN~Aa~~~lPvVFV~eNNgyAIStP~~~~~~~~~~ 315 (317)
||++|||++++|.+|| |||+|+.|++||||||+||+|+|++|...+.+..++
T Consensus 170 v~i~GDGa~~~G~~~E-al~~A~~~~lpvi~vv~NN~~gi~~~~~~~~~~~d~ 221 (367)
T 1umd_A 170 VCTFGDGATSEGDWYA-GINFAAVQGAPAVFIAENNFYAISVDYRHQTHSPTI 221 (367)
T ss_dssp EEEEETGGGGSHHHHH-HHHHHHHTTCSEEEEEEECSEETTEEHHHHCSSSCS
T ss_pred EEEEcccccccCcHHH-HHHHHHHhCcCEEEEEecCCeeeccChhhccCCCCH
Confidence 9999999999999999 999999999999999999999999998776655444
No 6
>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B*
Probab=100.00 E-value=8.6e-37 Score=325.76 Aligned_cols=204 Identities=11% Similarity=0.055 Sum_probs=164.9
Q ss_pred CCceEEeCCCCC-cccCC---CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCchHHHHHHHHhccC--
Q 021087 106 VPCFRVLDDNGE-LIKGS---DFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALS-- 179 (317)
Q Consensus 106 ~p~~rvld~~G~-~~~~~---~~~~ls~e~l~~lYr~M~~~R~~D~~~~~lqrqGrigfy~~~~GqEA~~VG~a~AL~-- 179 (317)
++.++|+|++|+ ++.+. ..+.+++|+++++|+.|+++|.||+++.+++++||. .+..||||+++|...+++
T Consensus 170 ~e~~~i~~~~~~~w~~~~~e~~~~~~s~e~~~~~y~~m~~~r~fE~~l~~~~~~gkr---f~~~G~Ea~i~g~~~~~~~a 246 (933)
T 2jgd_A 170 AEYMHITSTEEKRWIQQRIESGRATFNSEEKKRFLSELTAAEGLERYLGAKFPGAKR---FSLEGGDALIPMLKEMIRHA 246 (933)
T ss_dssp EECSSCCCHHHHHHHHHHHCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC--C---CCCTTCTTHHHHHHHHHHHH
T ss_pred ceeeecCCHHHhHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc---ccCCCchHHHHHHHHHHHHH
Confidence 467899999998 44221 146799999999999999999999999999999983 336899999999666554
Q ss_pred ----CCCeeec-CCchHHHHHH--hCCCHHHHHHHHhhCCCCCCCCCCCCcccCCCCCc----------ccccCCCCCCC
Q 021087 180 ----ADDFILP-QYREPGVLLW--RGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLN----------YITISSPIATQ 242 (317)
Q Consensus 180 ----~~D~v~~-~YR~~g~~l~--rG~~l~~~~~q~~G~~~g~~kGr~mp~H~~s~~~~----------i~~~sg~lGtq 242 (317)
++|+|++ +||+|+++|+ +|.++.++|+|++|+.+|.++|+++++|++....+ +.+.+|++|++
T Consensus 247 ~~~g~~D~v~g~~hRg~~~~Lan~~G~~~~~i~~e~~G~~~g~~g~gdv~~Hlg~~~~~~~~gg~~~l~l~~~~shlg~~ 326 (933)
T 2jgd_A 247 GNSGTREVVLGMAHRGRLNVLVNVLGKKPQDLFDEFAGKHKEHLGTGDVKYHMGFSSDFQTDGGLVHLALAFNPSHLEIV 326 (933)
T ss_dssp HTTTCCEEEEECCSTTHHHHHHHTTCCCHHHHHHHHHTCC--CCSCCCCGGGCCEEEEEEETTEEEEEEECCCCSSTTCH
T ss_pred hhCCCCCEEecCCCcCHHHHHHHHhCCCHHHHHHHhcCCCCCCCCCCCccccCCcccccccCCCceEEeecccCcccccc
Confidence 7999996 8999999999 99999999999999998888899999999865533 35778999999
Q ss_pred chhhhhHHhhhhhcC-----CCcEEEEEEcCCcc-CccchHHHHHHHHHHcCCC---EEEEEecCCccccc-cccccccC
Q 021087 243 LPQAVGVAYSLKMEK-----KDACAVAYTGDGGT-SEQLWKPLSSSSVATMAGP---LVPIYQNNFEAMVL-LLRVVHMV 312 (317)
Q Consensus 243 lp~AvG~A~A~kl~g-----~~~vvv~~~GDGat-seGdfhE~ALN~Aa~~~lP---vVFV~eNNgyAISt-P~~~~~~~ 312 (317)
+|+|+|+|+|.|+++ .+.++||++|||++ +||.+|| |||+|+.|++| +||||+||+|+|+| |++++...
T Consensus 327 ~p~A~G~A~A~~~~~~~~~~~~~~vv~v~GDGa~a~qG~~~E-aln~A~~~~lp~gg~I~vv~nN~~~ist~~~~~~~~~ 405 (933)
T 2jgd_A 327 SPVVIGSVRARLDRLDEPSSNKVLPITIHGDAAVTGQGVVQE-TLNMSKARGYEVGGTVRIVINNQVGFTTSNPLDARST 405 (933)
T ss_dssp HHHHHHHHHHHHTTSSSCCGGGEEEEEEEEHHHHHHCTHHHH-HHHHTTSTTTCCSCCEEEEEECC--------------
T ss_pred cCHHHHHHHHHHhhccccCCCCeEEEEEECCcccccCCHHHH-HHHHhhccCCCCCceEEEEEeCCccccCCCHHhcccc
Confidence 999999999999984 78899999999997 9999999 99999999999 99999999999999 88876554
Q ss_pred c
Q 021087 313 S 313 (317)
Q Consensus 313 ~ 313 (317)
+
T Consensus 406 ~ 406 (933)
T 2jgd_A 406 P 406 (933)
T ss_dssp -
T ss_pred h
Confidence 4
No 7
>2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A*
Probab=100.00 E-value=2.7e-36 Score=320.03 Aligned_cols=201 Identities=12% Similarity=0.089 Sum_probs=167.5
Q ss_pred CCceEEeCCCCC-ccc----CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCchHHHHHHHHhcc--
Q 021087 106 VPCFRVLDDNGE-LIK----GSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAAL-- 178 (317)
Q Consensus 106 ~p~~rvld~~G~-~~~----~~~~~~ls~e~l~~lYr~M~~~R~~D~~~~~lqrqGrigfy~~~~GqEA~~VG~a~AL-- 178 (317)
++..+|+|++++ ++. ... +.+++|+++++|+.|+++|.||+++..++++|++ .+..||||+++|++.+|
T Consensus 90 ~e~~~i~~~~~~~w~~~~~e~~~-~~~s~e~~~~~y~~m~~~R~fE~~l~~~~~~~k~---~g~~G~Ea~~~g~~~~l~~ 165 (868)
T 2yic_A 90 VEYTHILEPEQQRWIQERVETKH-DKPTVAEQKYILSKLNAAEAFETFLQTKYVGQKR---FSLEGAETVIPMMDAVIDQ 165 (868)
T ss_dssp EECTTCSCHHHHHHHHHHHSSCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHCSSCGG---GCCTTCTTHHHHHHHHHHH
T ss_pred cceeccCChHHhHHHHHHhccCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc---ccCCChHHHHHHHHHHHHH
Confidence 456788888887 332 122 6899999999999999999999999999999886 22399999999999775
Q ss_pred ----CCCCeeec-CCchHHHHHH--hCCCHHHHHHHHhhCCCCC-C-CCCCCCcccCCCC------------CcccccCC
Q 021087 179 ----SADDFILP-QYREPGVLLW--RGYTLQQFANQVFANKADD-G-KGRQMPIHYGSKK------------LNYITISS 237 (317)
Q Consensus 179 ----~~~D~v~~-~YR~~g~~l~--rG~~l~~~~~q~~G~~~g~-~-kGr~mp~H~~s~~------------~~i~~~sg 237 (317)
+++|+|++ +||+|++.|+ +|.++.++|+|++|+.+|+ + +|+++++|++... +++.+.+|
T Consensus 166 ~~~l~~~D~v~gm~hRg~~~~Lan~~G~~~~~i~ae~~G~~~g~~~~g~gdv~~Hlg~~~~~~~~~g~~~v~l~l~~n~s 245 (868)
T 2yic_A 166 CAEHGLDEVVIAMPHRGRLNVLANIVGKPYSQIFSEFEGNLNPSQAHGSGDVKYHLGATGTYIQMFGDNDIEVSLTANPS 245 (868)
T ss_dssp HHHTTCSEEEEECCSTTHHHHHHHTTCCCHHHHTTTCC------------CGGGTCCEEEEEECSSSSCEEEEEECCCCS
T ss_pred hhhCCCCCEEEeccccchHHHHHHHhCCCHHHHHHHhcCCCCCCccCCCCCccccCCccccccccCCCcceeeeecCCCc
Confidence 48999998 8999999999 9999999999999999877 3 5788899987543 45677789
Q ss_pred CCCCCchhhhhHHhhhhhcC----------CCcEEEEEEcCCc-cCccchHHHHHHHHHHcCCC---EEEEEecCCcccc
Q 021087 238 PIATQLPQAVGVAYSLKMEK----------KDACAVAYTGDGG-TSEQLWKPLSSSSVATMAGP---LVPIYQNNFEAMV 303 (317)
Q Consensus 238 ~lGtqlp~AvG~A~A~kl~g----------~~~vvv~~~GDGa-tseGdfhE~ALN~Aa~~~lP---vVFV~eNNgyAIS 303 (317)
+||+++|+|+|+|+|.|+++ .+.+++|++|||+ ++||.||| |||+|++|++| +||||+||+|+|+
T Consensus 246 ~Lg~~~P~A~G~A~A~k~~~~~~~~~~~~~~~~~vv~~~GDGa~~~eG~v~E-aln~A~~~~lp~g~vi~iv~NN~~g~s 324 (868)
T 2yic_A 246 HLEAVDPVLEGLVRAKQDLLDTGEEGSDNRFSVVPLMLHGDAAFAGQGVVAE-TLNLALLRGYRTGGTIHIVVNNQIGFT 324 (868)
T ss_dssp STTTTHHHHHHHHHHHHHHHTCSTTSSSCSCCEEEEEEEEHHHHHHCHHHHH-HHTTTTCTTTCCSCCEEEEEECSCBTT
T ss_pred cccccccHHHHHHHHHHhhccCCcccccccCCceEEEEECCcccccccHHHH-HHHHHHhcCCCCCCeEEEEEcCCcccc
Confidence 99999999999999999864 6789999999999 59999999 99999999999 9999999999999
Q ss_pred cccccccc
Q 021087 304 LLLRVVHM 311 (317)
Q Consensus 304 tP~~~~~~ 311 (317)
||.+++..
T Consensus 325 t~~~~~~s 332 (868)
T 2yic_A 325 TAPTDSRS 332 (868)
T ss_dssp BCHHHHCS
T ss_pred cCcccccc
Confidence 98775554
No 8
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis}
Probab=100.00 E-value=1.2e-35 Score=321.86 Aligned_cols=200 Identities=13% Similarity=0.093 Sum_probs=166.4
Q ss_pred CCceEEeCCCCC-ccc----CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc-cccccCCchHHHHHHHHhcc-
Q 021087 106 VPCFRVLDDNGE-LIK----GSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRF-SFYLTTIGEEAINIGSAAAL- 178 (317)
Q Consensus 106 ~p~~rvld~~G~-~~~----~~~~~~ls~e~l~~lYr~M~~~R~~D~~~~~lqrqGri-gfy~~~~GqEA~~VG~a~AL- 178 (317)
+...+|.|++++ ++. ... +.+++|+++++|+.|+++|.||+++..++++|++ |+ .||||+++|+..+|
T Consensus 335 ~e~~~i~~~~~~~w~~~~~e~~~-~~~s~e~~~~~y~~m~~~r~fE~~l~~~~~~~k~~g~----~GqEa~~~g~~~~l~ 409 (1113)
T 2xt6_A 335 VEYTHILEPEQQRWIQERVETKH-DKPTVAEQKYILSKLNAAEAFETFLQTKYVGQKRFSL----EGAETVIPMMDAVID 409 (1113)
T ss_dssp EECTTCSCHHHHHHHHHHHHSCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHCSSCGGGCC----TTCTTHHHHHHHHHH
T ss_pred cceeccCCHHHhHHHHHHhhcCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccC----CChHHHHHHHHHHHH
Confidence 345788888887 332 122 6899999999999999999999999999999886 44 99999999997774
Q ss_pred -----CCCCeeec-CCchHHHHHH--hCCCHHHHHHHHhhCCCCC-C-CCCCCCcccCCCC------------CcccccC
Q 021087 179 -----SADDFILP-QYREPGVLLW--RGYTLQQFANQVFANKADD-G-KGRQMPIHYGSKK------------LNYITIS 236 (317)
Q Consensus 179 -----~~~D~v~~-~YR~~g~~l~--rG~~l~~~~~q~~G~~~g~-~-kGr~mp~H~~s~~------------~~i~~~s 236 (317)
+++|+|++ +||+|++.|+ +|.++.++|+|++|+.+|+ + +|+++++|++... +++.+.+
T Consensus 410 ~~~~l~~~D~v~gm~hRg~~~~La~~~G~~~~~i~ae~~G~~~g~~~~g~gdv~~Hlg~~~~~~~~~g~~~v~l~l~~n~ 489 (1113)
T 2xt6_A 410 QCAEHGLDEVVIAMPHRGRLNVLANIVGKPYSQIFSEFEGNLNPSQAHGSGDVKYHLGATGTYIQMFGDNDIEVSLTANP 489 (1113)
T ss_dssp HHHHTTCSEEEEECCSTTHHHHHHHTTCCCHHHHSTTC-------------CGGGTCCEEEEEECSSSSCEEEEEECCCC
T ss_pred HhhhCCCCCEEEeccccchHHHHHHHhCCCHHHHHHHhcCCCCCCccCCCCCccccCCccccccccCCCcceeeeecCCC
Confidence 58999997 8999999999 9999999999999999887 3 5788899987543 4567789
Q ss_pred CCCCCCchhhhhHHhhhhhcC----------CCcEEEEEEcCCc-cCccchHHHHHHHHHHcCCC---EEEEEecCCccc
Q 021087 237 SPIATQLPQAVGVAYSLKMEK----------KDACAVAYTGDGG-TSEQLWKPLSSSSVATMAGP---LVPIYQNNFEAM 302 (317)
Q Consensus 237 g~lGtqlp~AvG~A~A~kl~g----------~~~vvv~~~GDGa-tseGdfhE~ALN~Aa~~~lP---vVFV~eNNgyAI 302 (317)
|+||+|+|+|+|+|+|.|+++ .+.+++|++|||+ ++||.||| |||+|++|++| +||||+||+|+|
T Consensus 490 s~Lg~~~p~A~G~A~A~k~~~~~~~~~~~~~~~~~~v~~~GDGa~~~eG~~~E-aln~A~~~~lp~g~vi~iv~NN~~gi 568 (1113)
T 2xt6_A 490 SHLEAVDPVLEGLVRAKQDLLDTGEEGSDNRFSVVPLMLHGDAAFAGQGVVAE-TLNLALLRGYRTGGTIHIVVNNQIGF 568 (1113)
T ss_dssp SSTTTTHHHHHHHHHHHHHHTTBSTTSSBSCCCEEEEEEEEHHHHHHCTHHHH-HHTTTTCTTTCCSCCEEEEEECSCBT
T ss_pred ccccccccHHHHHHHHHHHhccccCccccccCCcEEEEEECCcccccccHHHH-HHHHHhhcCCCCCCeEEEEEeCCccc
Confidence 999999999999999999876 6789999999999 59999999 99999999999 999999999999
Q ss_pred ccccccccc
Q 021087 303 VLLLRVVHM 311 (317)
Q Consensus 303 StP~~~~~~ 311 (317)
+||.+++..
T Consensus 569 st~~~~~~s 577 (1113)
T 2xt6_A 569 TTAPTDSRS 577 (1113)
T ss_dssp TBCHHHHCS
T ss_pred ccCcccccc
Confidence 998775544
No 9
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli}
Probab=99.93 E-value=2.1e-26 Score=235.69 Aligned_cols=182 Identities=12% Similarity=0.138 Sum_probs=134.6
Q ss_pred CceEEeCCCCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCchHHHHHHHHhccC-CCCeee
Q 021087 107 PCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALS-ADDFIL 185 (317)
Q Consensus 107 p~~rvld~~G~~~~~~~~~~ls~e~l~~lYr~M~~~R~~D~~~~~lqrqGrigfy~~~~GqEA~~VG~a~AL~-~~D~v~ 185 (317)
|.|.+|+ ++-.|.+.++++.+++.++|+.| |.++..+.. ++ .|++.++.|+|++.+++..+++ ++|+|+
T Consensus 6 ~~~~~l~---~i~~p~d~~~l~~~~l~~l~~~i---R~~~~~~~~--~~--~Gh~~~~lg~~~~~~~l~~~~~~~~D~~v 75 (621)
T 2o1s_A 6 AKYPTLA---LVDSTQELRLLPKESLPKLCDEL---RRYLLDSVS--RS--SGHFASGLGTVELTVALHYVYNTPFDQLI 75 (621)
T ss_dssp TTSTTGG---GCSSHHHHTTSCGGGHHHHHHHH---HHHHHHHSC--GG--GCTHHHHHTTHHHHHHHHHHSCTTTSEEE
T ss_pred CCCchhh---hcCChHHhhhCCHHHHHHHHHHH---HHHHHHHHh--hc--CCCcCCChhHHHHHHHHHhccCCCCCEEE
Confidence 4444454 23334556689999999999998 666655552 22 4899999999999999999999 899999
Q ss_pred --cCCchHHHHHHhCCCHHHHHHHHhhCCCCCCCCCCCCcccCC--CCCcccccCCCCCCCchhhhhHHhhhhhcCCCcE
Q 021087 186 --PQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGS--KKLNYITISSPIATQLPQAVGVAYSLKMEKKDAC 261 (317)
Q Consensus 186 --~~YR~~g~~l~rG~~l~~~~~q~~G~~~g~~kGr~mp~H~~s--~~~~i~~~sg~lGtqlp~AvG~A~A~kl~g~~~v 261 (317)
..||++++++.+|. .+++ .. +.+. .| .+.|... .+++++ .+|++|+++|.|+|+|+|.|+++.+++
T Consensus 76 ~~~gH~~y~~~~l~G~-~~~~-~~-~r~~----~g--~~g~~~~~~s~~~~~-~~G~~G~gl~~A~G~AlA~~~~~~~~~ 145 (621)
T 2o1s_A 76 WDVGHQAYPHKILTGR-RDKI-GT-IRQK----GG--LHPFPWRGESEYDVL-SVGHSSTSISAGIGIAVAAEKEGKNRR 145 (621)
T ss_dssp ESSSTTCHHHHHTTTT-GGGG-GG-TTST----TS--CCSSCCTTTCTTCCS-CCSSSSCHHHHHHHHHHHHHHHTSCCC
T ss_pred EeCchHHHHHHHHhCC-Hhhh-hc-cccc----CC--CCCCCCCCCCCCCcc-CCcccchHHHHHHHHHHHHHHhCCCCe
Confidence 78999999999998 2222 11 1111 12 1223221 133444 589999999999999999999999999
Q ss_pred EEEEEcCCccCccchHHHHHHHHHHcCCCEEEEEecCCcccccccccc
Q 021087 262 AVAYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNNFEAMVLLLRVV 309 (317)
Q Consensus 262 vv~~~GDGatseGdfhE~ALN~Aa~~~lPvVFV~eNNgyAIStP~~~~ 309 (317)
|||++|||++++|.+|| +||+|+.+++||||||+||+|+|++++..+
T Consensus 146 Vv~v~GDG~~~~G~~~E-aL~~A~~~~~pli~vvnnN~~~i~~~~~~~ 192 (621)
T 2o1s_A 146 TVCVIGDGAITAGMAFE-AMNHAGDIRPDMLVILNDNEMSISENVGAL 192 (621)
T ss_dssp EEEEEETTGGGSHHHHH-HHHHHHHHCCSEEEEEEECC----------
T ss_pred EEEEEchhhhhccHHHH-HHHHHHhhCCCEEEEEeCCCcccCCCcchH
Confidence 99999999999999999 999999999999999999999999998754
No 10
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans}
Probab=99.90 E-value=1.3e-24 Score=222.93 Aligned_cols=171 Identities=14% Similarity=0.088 Sum_probs=135.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCchHHHHHHHHhccC-CCCeeecCCchHH---HHHH
Q 021087 121 GSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALS-ADDFILPQYREPG---VLLW 196 (317)
Q Consensus 121 ~~~~~~ls~e~l~~lYr~M~~~R~~D~~~~~lqrqGrigfy~~~~GqEA~~VG~a~AL~-~~D~v~~~YR~~g---~~l~ 196 (317)
+.+.++++.+++.++|+.| |.+...+.. + ..|++++++|+-.+.++....++ ++|+|+.+ |+|+ +.++
T Consensus 19 p~d~~~l~~~~l~~l~~~i---R~~~~~~~~---~-~~Gh~~~~lg~v~l~~aL~~~~~~~~D~~v~~-~GH~~y~~~~l 90 (629)
T 2o1x_A 19 PKDLKRLSREQLPALTEEL---RGEIVRVCS---R-GGLHLASSLGAVDIITALHYVLDSPRDRILFD-VGHQAYAHKIL 90 (629)
T ss_dssp HHHHTTSCGGGHHHHHHHH---HHHHHHHHT---T-SSSCHHHHHHTHHHHHHHHHHSCTTTSEEEES-SSTTCHHHHHT
T ss_pred hhhhhhCCHHHHHHHHHHH---HHHHHHHHH---h-cCCcCCCchhHHHHHHHHHhhcCCCCCeEEec-CchHHHHHHHH
Confidence 3455678999999999999 655544443 2 34889999999555555555568 89999999 9996 7888
Q ss_pred hCC-CHHHHHHHHhhCCCCCCCCCCCCcccCCCCCcccccCCCCCCCchhhhhHHhhhhhcCCCcEEEEEEcCCccCccc
Q 021087 197 RGY-TLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEQL 275 (317)
Q Consensus 197 rG~-~l~~~~~q~~G~~~g~~kGr~mp~H~~s~~~~i~~~sg~lGtqlp~AvG~A~A~kl~g~~~vvv~~~GDGatseGd 275 (317)
+|. +....+.|+.|. +|+.+++. ..++...+|++|+++|.|+|+|+|.|+++.++.|||++|||++++|.
T Consensus 91 ~G~~~~~~~~r~~~g~-~G~p~~~~--------s~~~~~~~G~~G~gl~~AvG~AlA~k~~~~~~~Vv~v~GDG~~~~G~ 161 (629)
T 2o1x_A 91 TGRRDQMADIKKEGGI-SGFTKVSE--------SEHDAITVGHASTSLTNALGMALARDAQGKDFHVAAVIGDGSLTGGM 161 (629)
T ss_dssp TTTGGGGGGTTSTTSC-CSSCCGGG--------CTTCCSCCSSSSCHHHHHHHHHHHHHHHTCCCCEEEEEETTGGGSHH
T ss_pred hCcHhHHhCcccCCCC-CCCCCCCC--------CCCCCcCCCcccccHhHHHHHHHHHHHhCCCCeEEEEEchhhhhccH
Confidence 887 444445555442 34444322 12456678999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHcCCCEEEEEecCCcccccccccc
Q 021087 276 WKPLSSSSVATMAGPLVPIYQNNFEAMVLLLRVV 309 (317)
Q Consensus 276 fhE~ALN~Aa~~~lPvVFV~eNNgyAIStP~~~~ 309 (317)
+|| +||+|+.+++||||||+||+|+|++++..+
T Consensus 162 ~~E-aL~~A~~~~~pli~IvnnN~~~i~~~~~~~ 194 (629)
T 2o1x_A 162 ALA-ALNTIGDMGRKMLIVLNDNEMSISENVGAM 194 (629)
T ss_dssp HHH-HHHHHHHHCCSEEEEEEECSBSSSBCCSSH
T ss_pred HHH-HHHHHHhhCCCEEEEEECCCCCCCCChhHH
Confidence 999 999999999999999999999999998743
No 11
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis}
Probab=99.79 E-value=1.9e-19 Score=187.53 Aligned_cols=160 Identities=17% Similarity=0.143 Sum_probs=126.2
Q ss_pred HHHHHHHHHHHHHhcCcccccccCCchHHHHHHHHhccC--C-------CCeeec--CCch---HHHHHHhCC--CHHHH
Q 021087 141 TLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALS--A-------DDFILP--QYRE---PGVLLWRGY--TLQQF 204 (317)
Q Consensus 141 ~~R~~D~~~~~lqrqGrigfy~~~~GqEA~~VG~a~AL~--~-------~D~v~~--~YR~---~g~~l~rG~--~l~~~ 204 (317)
.+|.+-..+......|++|..++.. |.+.+.....|+ | .|.++. .|-. ++++...|+ +.++
T Consensus 29 ~iR~~~~~~v~~a~sGH~g~~ls~a--~i~~~L~~~~l~~~p~~p~~~~rDrfvls~GH~s~~lYa~l~l~G~~~~~~~- 105 (700)
T 3rim_A 29 TIRVLAADAVQKVGNGHPGTAMSLA--PLAYTLFQRTMRHDPSDTHWLGRDRFVLSAGHSSLTLYIQLYLGGFGLELSD- 105 (700)
T ss_dssp HHHHHHHHHHHHHTCSCCHHHHHTH--HHHHHHHHTTCCCCTTCTTCTTCCEEEESSTTCHHHHHHHHHHTTSSCCHHH-
T ss_pred HHHHHHHHHHHHhCCCCCCccHHHH--HHHHHHHHHHhCCCCCCCCCCCCCeEEECCCchhHHHHHHHHHhCCCCCHHH-
Confidence 5677666666666678998888777 777766666785 3 687665 4565 446667786 4444
Q ss_pred HHHHhhCCCCCCCCCCCCcccC-CCCCcccccCCCCCCCchhhhhHHhhhhhc-------------CCCcEEEEEEcCCc
Q 021087 205 ANQVFANKADDGKGRQMPIHYG-SKKLNYITISSPIATQLPQAVGVAYSLKME-------------KKDACAVAYTGDGG 270 (317)
Q Consensus 205 ~~q~~G~~~g~~kGr~mp~H~~-s~~~~i~~~sg~lGtqlp~AvG~A~A~kl~-------------g~~~vvv~~~GDGa 270 (317)
+.. |.+. |...|.|+. ....++...+|++|+++++|+|+|+|.|++ +.+++|+|++|||+
T Consensus 106 l~~-fr~~-----gs~~~ghp~~~~~pgv~~~tG~lG~gl~~AvG~AlA~k~~~~~~~~~~~~~~~~~~~~v~~~~GDG~ 179 (700)
T 3rim_A 106 IES-LRTW-----GSKTPGHPEFRHTPGVEITTGPLGQGLASAVGMAMASRYERGLFDPDAEPGASPFDHYIYVIASDGD 179 (700)
T ss_dssp HTT-TTST-----TCSCCSSCCBTTBTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCTTSCTTCSTTCCCEEEEEEHHH
T ss_pred HHH-hhcC-----CCCCCCCCCCCCCCCccccccccCCcchHHHHHHHHHHHHhhhccccccccccCCCCeEEEEECCcc
Confidence 443 3333 555677875 356789999999999999999999999984 56899999999999
Q ss_pred cCccchHHHHHHHHHHcCCC-EEEEEecCCccccccccccc
Q 021087 271 TSEQLWKPLSSSSVATMAGP-LVPIYQNNFEAMVLLLRVVH 310 (317)
Q Consensus 271 tseGdfhE~ALN~Aa~~~lP-vVFV~eNNgyAIStP~~~~~ 310 (317)
++||.+|| |+|+|+.|+|| +||||+||+|+|++|++.+.
T Consensus 180 l~eG~~~E-Al~~A~~~~L~nli~i~d~N~~si~~~~~~~~ 219 (700)
T 3rim_A 180 IEEGVTSE-ASSLAAVQQLGNLIVFYDRNQISIEDDTNIAL 219 (700)
T ss_dssp HHSHHHHH-HHHHHHHTTCTTEEEEEEECSEETTEEGGGTC
T ss_pred cccChHHH-HHHHHHHcCCCcEEEEEECCCcccccchhhcc
Confidence 99999999 99999999997 99999999999999998653
No 12
>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=99.76 E-value=1.5e-18 Score=179.73 Aligned_cols=163 Identities=16% Similarity=0.177 Sum_probs=126.5
Q ss_pred HHHHHHHHHHHHHHHhcCcccccccCCchHHHHHHHHhccC--C-------CCeeecC--Cch---HHHHHHhCC-CHHH
Q 021087 139 MVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALS--A-------DDFILPQ--YRE---PGVLLWRGY-TLQQ 203 (317)
Q Consensus 139 M~~~R~~D~~~~~lqrqGrigfy~~~~GqEA~~VG~a~AL~--~-------~D~v~~~--YR~---~g~~l~rG~-~l~~ 203 (317)
...+|.+-..+......|++|..+++. |.+.+.....|+ | .|.++.+ |-. ++++...|+ -..+
T Consensus 10 a~~iR~~~~~~v~~a~~GH~g~~ls~a--~~~~~L~~~~l~~~p~~p~~~~rDrfvls~GH~~~~lYa~l~l~G~~~~~~ 87 (673)
T 1r9j_A 10 ANCIRCLAADIVQGGKSGHPGTPMGMA--PMSAVLWTEVMKYNSQDPDWVDRDRFVMSNGHGCALQYALLHMAGYNLTMD 87 (673)
T ss_dssp HHHHHHHHHHHHHHHTCSCCHHHHHTH--HHHHHHHHTTCCCCTTCTTCTTCCEEEESSGGGHHHHHHHHHHHTCSCCHH
T ss_pred HHHHHHHHHHHHHHcCCCCcchhHHHH--HHHHHHHHHhhCCCCCCCCCCCCCeEEEccccHHHHHHHHHHHcCCCCCHH
Confidence 455666655666666789998888887 777776666664 2 3666544 444 346667787 3334
Q ss_pred HHHHHhhCCCCCCCCCCCCcccCC-CCCcccccCCCCCCCchhhhhHHhhhhhcC----------CCcEEEEEEcCCccC
Q 021087 204 FANQVFANKADDGKGRQMPIHYGS-KKLNYITISSPIATQLPQAVGVAYSLKMEK----------KDACAVAYTGDGGTS 272 (317)
Q Consensus 204 ~~~q~~G~~~g~~kGr~mp~H~~s-~~~~i~~~sg~lGtqlp~AvG~A~A~kl~g----------~~~vvv~~~GDGats 272 (317)
-+.. |.+. |...|.|... ...++...+|++|+++|.|+|+|+|.|+++ .+++|+|++|||+++
T Consensus 88 ~l~~-~r~~-----~s~~~ghp~~~~~pgv~~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~g~~~~d~~v~~~~GDG~~~ 161 (673)
T 1r9j_A 88 DLKG-FRQD-----GSRTPGHPERFVTPGVEVTTGPLGQGIANAVGLAIAEAHLAATFNRPGYNIVDHYTYVYCGDGCLM 161 (673)
T ss_dssp HHHT-TTST-----TCSCCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHH
T ss_pred HHHh-hccC-----CCCCCCCCCCCCCCCeeeccCCCCCcHHHHHHHHHHHHHhhhhccccccCCCCCEEEEEECcchhc
Confidence 4444 3333 4556678753 346889999999999999999999999765 588999999999999
Q ss_pred ccchHHHHHHHHHHcCCC-EEEEEecCCccccccccccc
Q 021087 273 EQLWKPLSSSSVATMAGP-LVPIYQNNFEAMVLLLRVVH 310 (317)
Q Consensus 273 eGdfhE~ALN~Aa~~~lP-vVFV~eNNgyAIStP~~~~~ 310 (317)
||.+|| |+|+|+.++|| +||||+||+|+|++|+..+.
T Consensus 162 eG~~~E-al~~A~~~~L~~li~i~d~N~~~i~~~~~~~~ 199 (673)
T 1r9j_A 162 EGVCQE-ALSLAGHLALEKLIVIYDSNYISIDGSTSLSF 199 (673)
T ss_dssp SHHHHH-HHHHHHHHTCTTEEEEEEECSBCSSSBGGGTC
T ss_pred ccHHHH-HHHHHHHhCCCcEEEEEECCCCccccchhhcc
Confidence 999999 99999999998 99999999999999998765
No 13
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A*
Probab=99.76 E-value=4.2e-18 Score=174.87 Aligned_cols=178 Identities=15% Similarity=0.050 Sum_probs=134.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCchHHHHHHHHhccC--C-------CCeeecC--Cch---H
Q 021087 126 QVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALS--A-------DDFILPQ--YRE---P 191 (317)
Q Consensus 126 ~ls~e~l~~lYr~M~~~R~~D~~~~~lqrqGrigfy~~~~GqEA~~VG~a~AL~--~-------~D~v~~~--YR~---~ 191 (317)
.+++..+.+|-+....+|.+-..+......|++|.-+++. |.+.+.....|+ | .|.++.+ |-. .
T Consensus 4 ~~~~~~~~~l~~~a~~iR~~~i~~~~~~~~GH~g~~l~~~--e~~~~L~~~~~~~~~~~p~~~~rDr~v~s~GH~~~~ly 81 (616)
T 3mos_A 4 KPDQQKLQALKDTANRLRISSIQATTAAGSGHPTSCCSAA--EIMAVLFFHTMRYKSQDPRNPHNDRFVLSKGHAAPILY 81 (616)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCHHHHHTTH--HHHHHHHHTTCBCCTTCTTCTTSCEEEESSGGGHHHHH
T ss_pred cccccCHHHHHHHHHHHHHHHHHHHHhcCCCcCCcchhHH--HHHHHHHHHhhccCCCCCCCCCCCeEEEcCccHHHHHH
Confidence 5667777777777778888877776666678888777777 766655555552 2 6877765 444 2
Q ss_pred HHHHHhCCCHHHHHHHHhhCCCCCCCCCCCCcccCCCCCcccccCCCCCCCchhhhhHHhhhhhcCC-CcEEEEEEcCCc
Q 021087 192 GVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKK-DACAVAYTGDGG 270 (317)
Q Consensus 192 g~~l~rG~~l~~~~~q~~G~~~g~~kGr~mp~H~~s~~~~i~~~sg~lGtqlp~AvG~A~A~kl~g~-~~vvv~~~GDGa 270 (317)
+++...|+-..+-+.. |.+. |...+.|......++...+|++|+++|.|+|+|+|.|+.++ ++.|+|++|||+
T Consensus 82 ~~~~l~G~~~~~~l~~-~r~~-----~s~l~ghp~~~~~~~d~~~G~lG~gl~~A~G~AlA~~~~~~~~~~vv~v~GDG~ 155 (616)
T 3mos_A 82 AVWAEAGFLAEAELLN-LRKI-----SSDLDGHPVPKQAFTDVATGSLGQGLGAACGMAYTGKYFDKASYRVYCLLGDGE 155 (616)
T ss_dssp HHHHHTTSSCGGGGGG-TTCT-----TCSCCSSCCTTSTTCSSCCCSTTCHHHHHHHHHHHHHHTSCCSCCEEEEEETGG
T ss_pred HHHHHcCCCCHHHHHH-hccC-----CCCCCCCCCCCCCcccccccccCCccHHHHHHHHHHHHhCCCCCEEEEEECccc
Confidence 3556678632233333 2222 55667787655667777899999999999999999997665 589999999999
Q ss_pred cCccchHHHHHHHHHHcCCC-EEEEEecCCccccccccccccC
Q 021087 271 TSEQLWKPLSSSSVATMAGP-LVPIYQNNFEAMVLLLRVVHMV 312 (317)
Q Consensus 271 tseGdfhE~ALN~Aa~~~lP-vVFV~eNNgyAIStP~~~~~~~ 312 (317)
++||.+|| +||+|+.++|| +|+|++||+|+|++++..+...
T Consensus 156 ~~eG~~~E-al~~A~~~~l~~livi~nnN~~~i~~~~~~~~~~ 197 (616)
T 3mos_A 156 LSEGSVWE-AMAFASIYKLDNLVAILDINRLGQSDPAPLQHQM 197 (616)
T ss_dssp GGSHHHHH-HHHHHHHTTCTTEEEEEEECSBCSSSBCTTTTCH
T ss_pred cccCcHHH-HHHHHHHcCCCcEEEEEECCCCCCcCCcccccCh
Confidence 99999999 99999999998 8899999999999998766543
No 14
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A*
Probab=99.74 E-value=4.3e-18 Score=176.50 Aligned_cols=163 Identities=18% Similarity=0.180 Sum_probs=121.9
Q ss_pred HHHHHHHHHHHHHHHhcCcccccccCCchHHHHHHHHh-ccCC-------CCeeecC--Cch---HHHHHHhCC-CHHHH
Q 021087 139 MVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAA-ALSA-------DDFILPQ--YRE---PGVLLWRGY-TLQQF 204 (317)
Q Consensus 139 M~~~R~~D~~~~~lqrqGrigfy~~~~GqEA~~VG~a~-AL~~-------~D~v~~~--YR~---~g~~l~rG~-~l~~~ 204 (317)
...+|.+-..+......|++|..++.. |.+.+.... ..+| .|.++.+ |-. ++++...|+ -..+-
T Consensus 12 a~~iR~~~~~~v~~a~~GH~g~~l~~~--~i~~~L~~~~~~~~~~p~~~~rDr~v~s~GH~~~~lYa~~~l~G~~~~~~~ 89 (680)
T 1gpu_A 12 VSTIRILAVDTVSKANSGHPGAPLGMA--PAAHVLWSQMRMNPTNPDWINRDRFVLSNGHAVALLYSMLHLTGYDLSIED 89 (680)
T ss_dssp HHHHHHHHHHHHHHHTCSCCHHHHHHH--HHHHHHHHTCCCCTTCTTCTTCCEEEESSGGGHHHHHHHHHHTTCSCCHHH
T ss_pred HHHHHHHHHHHHHHcCCCccCCchhHH--HHHHHHHHhCCCCccCCCCCCCCEEEEecchHHHHHHHHHHHhCCCCCHHH
Confidence 456676666666665678887666555 555444433 3344 5776654 555 446667787 22333
Q ss_pred HHHHhhCCCCCCCCCCCCcccCCCCCcccccCCCCCCCchhhhhHHhhhhhcC----------CCcEEEEEEcCCccCcc
Q 021087 205 ANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEK----------KDACAVAYTGDGGTSEQ 274 (317)
Q Consensus 205 ~~q~~G~~~g~~kGr~mp~H~~s~~~~i~~~sg~lGtqlp~AvG~A~A~kl~g----------~~~vvv~~~GDGatseG 274 (317)
+.. |.+. |...|.|+.....++...+|++|+++|.|+|+|+|.|+++ .+++|+|++|||+++||
T Consensus 90 l~~-~r~~-----g~~~~ghp~~~~~g~~~~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~vv~i~GDG~~~eG 163 (680)
T 1gpu_A 90 LKQ-FRQL-----GSRTPGHPEFELPGVEVTTGPLGQGISNAVGMAMAQANLAATYNKPGFTLSDNYTYVFLGDGCLQEG 163 (680)
T ss_dssp HTT-TTCT-----TCSCCSSCCTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSH
T ss_pred HHh-hccc-----CCCCCCCCCccCCCeeeccccccchHHHHHHHHHHHHHhccccccCccCCCCCeEEEEECCCccchh
Confidence 333 3333 4445778766778999999999999999999999999765 47899999999999999
Q ss_pred chHHHHHHHHHHcCCC-EEEEEecCCccccccccccc
Q 021087 275 LWKPLSSSSVATMAGP-LVPIYQNNFEAMVLLLRVVH 310 (317)
Q Consensus 275 dfhE~ALN~Aa~~~lP-vVFV~eNNgyAIStP~~~~~ 310 (317)
.+|| |||+|+.++|| +||||+||+|+|++++..+.
T Consensus 164 ~~~E-al~~A~~~~L~~li~i~~nN~~~i~~~~~~~~ 199 (680)
T 1gpu_A 164 ISSE-ASSLAGHLKLGNLIAIYDDNKITIDGATSISF 199 (680)
T ss_dssp HHHH-HHHHHHHTTCTTEEEEEEECSEETTEEGGGTC
T ss_pred hHHH-HHHHHHHhCCCcEEEEEECCCceEeccccccc
Confidence 9999 99999999998 99999999999999987653
No 15
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=99.73 E-value=8.4e-18 Score=174.19 Aligned_cols=176 Identities=16% Similarity=0.152 Sum_probs=128.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCchHHHHHHHHhcc--C-------CCCeeecC--Cch-
Q 021087 123 DFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAAL--S-------ADDFILPQ--YRE- 190 (317)
Q Consensus 123 ~~~~ls~e~l~~lYr~M~~~R~~D~~~~~lqrqGrigfy~~~~GqEA~~VG~a~AL--~-------~~D~v~~~--YR~- 190 (317)
.-..|+.++|.++ ...+|.+-..+......|++|..++.. |.+.+.....| + +.|.++.+ |-.
T Consensus 7 ~~~~l~~~~l~~~---a~~iR~~~~~~v~~a~~GH~g~~l~~~--~i~~~L~~~~~~~~p~~p~~~~rDr~vls~GH~~~ 81 (675)
T 1itz_A 7 QGKAATGELLEKS---VNTIRFLAIDAVEKANSGHPGLPMGCA--PMGHVLYDEVMRYNPKNPYWFNRDRFVLSAGHGCM 81 (675)
T ss_dssp ---CCCHHHHHHH---HHHHHHHHHHHHHHHTCSCCHHHHHHH--HHHHHHHHHTCCCCTTCTTCTTCCEEEESSGGGHH
T ss_pred ccCCCCHHHHHHH---HHHHHHHHHHHHHHcCCCccCccHhHH--HHHHHHHHHHhcCCcCCCCCCCCCeEEEcCcchHH
Confidence 3457888888754 556677666666666688887766665 55554444334 3 24765544 555
Q ss_pred --HHHHHHhCC--CHHHHHHHHhhCCCCCCCCCCCCcccC-CCCCcccccCCCCCCCchhhhhHHhhhhhcC--------
Q 021087 191 --PGVLLWRGY--TLQQFANQVFANKADDGKGRQMPIHYG-SKKLNYITISSPIATQLPQAVGVAYSLKMEK-------- 257 (317)
Q Consensus 191 --~g~~l~rG~--~l~~~~~q~~G~~~g~~kGr~mp~H~~-s~~~~i~~~sg~lGtqlp~AvG~A~A~kl~g-------- 257 (317)
++++...|+ -..+-+.. |.+. |...|.|.. ....++...+|++|+++|.|+|+|+|.|+++
T Consensus 82 ~lYa~l~l~G~~~~~~~~l~~-~r~~-----~~~~~ghp~~~~~~~~~~~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~ 155 (675)
T 1itz_A 82 LQYALLHLAGYDSVKEEDLKQ-FRQW-----GSRTPGHPENFETPGVEVTTGPLGQGIANAVGLALAEKHLAARFNKPDS 155 (675)
T ss_dssp HHHHHHHHHTCTTCCHHHHTT-TTST-----TCSSCSSCCTTTCTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTB
T ss_pred HHHHHHHHcCCCCCCHHHHHh-cccC-----CCCCCCCCCCCCCCCeeECCccHHhHHHHHHHHHHHhhhhccccccccc
Confidence 445667787 23233433 3333 333456764 3346889999999999999999999999876
Q ss_pred --CCcEEEEEEcCCccCccchHHHHHHHHHHcCC-CEEEEEecCCccccccccccc
Q 021087 258 --KDACAVAYTGDGGTSEQLWKPLSSSSVATMAG-PLVPIYQNNFEAMVLLLRVVH 310 (317)
Q Consensus 258 --~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~l-PvVFV~eNNgyAIStP~~~~~ 310 (317)
.++.|+|++|||+++||.+|| |||+|+.++| |+|+||+||+|+|++++....
T Consensus 156 ~~~~~~v~~i~GDG~~~eG~~~E-al~~A~~~~L~~li~i~~nN~~~i~~~~~~~~ 210 (675)
T 1itz_A 156 EIVDHYTYVILGDGCQMEGIANE-ACSLAGHWGLGKLIAFYDDNHISIDGDTEIAF 210 (675)
T ss_dssp CCCCCCEEEEECHHHHHSHHHHH-HHHHHHHTTCTTEEEEEEECSEETTEEGGGTC
T ss_pred CCCCCEEEEEECHhHhchhHHHH-HHHHHHHhCCCcEEEEEECCCccCCCChhhhc
Confidence 688999999999999999999 9999999999 599999999999999987654
No 16
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp}
Probab=99.72 E-value=9.5e-18 Score=173.80 Aligned_cols=163 Identities=16% Similarity=0.135 Sum_probs=115.2
Q ss_pred HHHHHHHHHHHHHHHhcCcccccccCCchHHHHHHHHhccC---------CCCeeecC--Cch---HHHHHHhCC-CHHH
Q 021087 139 MVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALS---------ADDFILPQ--YRE---PGVLLWRGY-TLQQ 203 (317)
Q Consensus 139 M~~~R~~D~~~~~lqrqGrigfy~~~~GqEA~~VG~a~AL~---------~~D~v~~~--YR~---~g~~l~rG~-~l~~ 203 (317)
...+|.+-..+......|++|..++.. |.+.+.....|+ +.|.++.+ |-. ++++...|+ -..+
T Consensus 10 a~~iR~~~~~~v~~a~~GH~g~~l~~~--~i~~~L~~~~~~~~~~~p~~~~rDrfvls~GH~s~~lYa~l~l~G~~~~~~ 87 (663)
T 3kom_A 10 SNAIRFLSIDATLKAKSGHPGMPMGMA--DIATVLWTKFLKHNPNNPHWINRDRFVLSNGHGSMLLYSLLHLTGYDLSIE 87 (663)
T ss_dssp HHHHHHHHHHHHHHHTCSCCHHHHHHH--HHHHHHHHHTCCCCTTCTTCTTSCEEEECSSSCHHHHHHHHHHHTCSCCHH
T ss_pred HHHHHHHHHHHHHhcCCCCCCccHHHH--HHHHHHHhhheeeCCCCCCCCCCCeEEEeCCcccHHHHHHHHHhCCCCCHH
Confidence 345566555565555678877666665 666555444553 36777654 555 444566786 3333
Q ss_pred HHHHHhhCCCCCCCCCCCCcccC-CCCCcccccCCCCCCCchhhhhHHhhhhhcCC----------CcEEEEEEcCCccC
Q 021087 204 FANQVFANKADDGKGRQMPIHYG-SKKLNYITISSPIATQLPQAVGVAYSLKMEKK----------DACAVAYTGDGGTS 272 (317)
Q Consensus 204 ~~~q~~G~~~g~~kGr~mp~H~~-s~~~~i~~~sg~lGtqlp~AvG~A~A~kl~g~----------~~vvv~~~GDGats 272 (317)
-+.+ |.+. |...|.|.. ....++...+|++|+++|.|+|+|+|.|+++. ++.|+|++|||+++
T Consensus 88 ~l~~-~r~~-----~s~~~ghp~~~~~~gve~~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~d~~v~~i~GDG~l~ 161 (663)
T 3kom_A 88 DIKN-FRQL-----HSKTPGHPEYGYTPGVETTTGPLGQGVANAVGMALGEKLLSDRYNTPDLKVIDHHTYVFLGDGCLM 161 (663)
T ss_dssp HHTT-TTST-----TCSCCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCSCCCCEEEEECHHHHH
T ss_pred HHHh-hccC-----CCCCCCCCCCCCCCCcccCCcchhhHHHHHHHHHHhHHhhcccccccccccCCCeEEEEECchhhh
Confidence 3443 3333 333456763 34568888999999999999999999998764 78999999999999
Q ss_pred ccchHHHHHHHHHHcCCC-EEEEEecCCccccccccccc
Q 021087 273 EQLWKPLSSSSVATMAGP-LVPIYQNNFEAMVLLLRVVH 310 (317)
Q Consensus 273 eGdfhE~ALN~Aa~~~lP-vVFV~eNNgyAIStP~~~~~ 310 (317)
||.+|| |||+|+.++|| +|+||+||+|+|++++....
T Consensus 162 eG~~~E-al~~A~~~~L~~livi~dnN~~~i~~~~~~~~ 199 (663)
T 3kom_A 162 EGVSHE-ACSLAGTLGLNKLVAFWDDNNISIDGDTKGWF 199 (663)
T ss_dssp SHHHHH-HHHHHHHHTCTTEEEEEEECC-----CGGGTC
T ss_pred hchHHH-HHHHHHHhCCCeEEEEEECCCcccccchhhhc
Confidence 999999 99999999998 99999999999999987653
No 17
>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A*
Probab=99.71 E-value=1.1e-17 Score=172.46 Aligned_cols=162 Identities=17% Similarity=0.168 Sum_probs=121.8
Q ss_pred HHHHHHHHHHHHHHHhcCcccccccCCchHHHHHHHHhccC---------CCCeeecC--Cch---HHHHHHhCC-CHHH
Q 021087 139 MVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALS---------ADDFILPQ--YRE---PGVLLWRGY-TLQQ 203 (317)
Q Consensus 139 M~~~R~~D~~~~~lqrqGrigfy~~~~GqEA~~VG~a~AL~---------~~D~v~~~--YR~---~g~~l~rG~-~l~~ 203 (317)
...+|.+-..+......|++|..++.. |.+.+. ...|+ +.|.++.+ |-. .+++...|+ -..+
T Consensus 10 a~~iR~~~i~~v~~a~~GH~g~~lg~~--ei~~~L-~~~~~~~p~~p~~~~rDrfvls~GH~~~~lYa~l~l~G~~~~~~ 86 (632)
T 3l84_A 10 ANTLRFLSADMVQKANSGHPGAPLGLA--DILSVL-SYHLKHNPKNPTWLNRDRLVFSGGHASALLYSFLHLSGYDLSLE 86 (632)
T ss_dssp HHHHHHHHHHHHHHHTCSCCHHHHHHH--HHHHHH-TTTCCCCTTCTTCTTSCEEEESSGGGHHHHHHHHHHHTCSCCHH
T ss_pred HHHHHHHHHHHHHhcCCCCCCcChhHH--HHHHHH-HHHhCcCCCCCCCCCCCEEEEcCCcccHHHHHHHHHhCCCCCHH
Confidence 456677666666655678877666555 555444 66674 46877764 555 556777886 3333
Q ss_pred HHHHHhhCCCCCCCCCCCCcccCCCCCcccccCCCCCCCchhhhhHHhhhhhcCC-------CcEEEEEEcCCccCccch
Q 021087 204 FANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKK-------DACAVAYTGDGGTSEQLW 276 (317)
Q Consensus 204 ~~~q~~G~~~g~~kGr~mp~H~~s~~~~i~~~sg~lGtqlp~AvG~A~A~kl~g~-------~~vvv~~~GDGatseGdf 276 (317)
-|.+ |.+. |...|.|......++...+|++|+++|.|+|+|+|.|+++. ++.|+|++|||+++||.+
T Consensus 87 ~l~~-~r~~-----~s~~~ghp~~~~~g~~~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~d~~v~~v~GDG~~~eG~~ 160 (632)
T 3l84_A 87 DLKN-FRQL-----HSKTPGHPEISTLGVEIATGPLGQGVANAVGFAMAAKKAQNLLGSDLIDHKIYCLCGDGDLQEGIS 160 (632)
T ss_dssp HHTT-TTCT-----TCSSCSSCCTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCTTTCCCCEEEEEEHHHHHSHHH
T ss_pred HHHH-HhcC-----CCCCCCCCCCCCCCcccCCcchhhHHHHHHHHHHHHHhhccccccCCCCCeEEEEECCcchhhccH
Confidence 3444 3333 33335566445678899999999999999999999998764 889999999999999999
Q ss_pred HHHHHHHHHHcCCC-EEEEEecCCccccccccccc
Q 021087 277 KPLSSSSVATMAGP-LVPIYQNNFEAMVLLLRVVH 310 (317)
Q Consensus 277 hE~ALN~Aa~~~lP-vVFV~eNNgyAIStP~~~~~ 310 (317)
|| |||+|+.++|| +|+|++||+|+|+.++....
T Consensus 161 ~E-al~~A~~~~L~~livi~nnN~~~i~~~~~~~~ 194 (632)
T 3l84_A 161 YE-ACSLAGLHKLDNFILIYDSNNISIEGDVGLAF 194 (632)
T ss_dssp HH-HHHHHHHTTCTTEEEEEEECSEETTEEGGGTC
T ss_pred HH-HHHHHHHcCCCcEEEEEECCCcccccchhhhc
Confidence 99 99999999998 99999999999999987653
No 18
>3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A*
Probab=99.71 E-value=1.6e-17 Score=173.35 Aligned_cols=163 Identities=17% Similarity=0.127 Sum_probs=122.2
Q ss_pred HHHHHHHHHHHHHHHhcCcccccccCCchHHHHHHHHhccC--C-------CCeeecC--Cch---HHHHHHhCC-CHHH
Q 021087 139 MVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALS--A-------DDFILPQ--YRE---PGVLLWRGY-TLQQ 203 (317)
Q Consensus 139 M~~~R~~D~~~~~lqrqGrigfy~~~~GqEA~~VG~a~AL~--~-------~D~v~~~--YR~---~g~~l~rG~-~l~~ 203 (317)
...+|.+-..+......|++|..+++. |.+.+.....|+ | .|.++.+ |-. .+++...|+ -..+
T Consensus 49 a~~iR~~~i~~v~~a~~GH~g~~l~~a--ei~~~L~~~~~~~~~~~p~~~~rDrfvls~GH~s~~lYa~l~l~G~~~~~~ 126 (711)
T 3uk1_A 49 ANAIRALAMDAVQQANSGHPGMPMGMA--EIGVALWSRHLKHNPTNPHWADRDRFVLSNGHGSMLLYSLLHLTGYDLPIE 126 (711)
T ss_dssp HHHHHHHHHHHHHHHTCSCCHHHHHTH--HHHHHHHHHTCCCCTTCTTCTTCCEEEECSGGGHHHHHHHHHHHTCSCCHH
T ss_pred HHHHHHHHHHHHHhcCCCccCchHHHH--HHHHHHHhhhEeeCCCCCCCCCCCeEEEeCCcccHHHHHHHHHhCCCCCHH
Confidence 445666655565555688888777777 777666555553 3 6877765 444 334566787 3333
Q ss_pred HHHHHhhCCCCCCCCCCCCcccC-CCCCcccccCCCCCCCchhhhhHHhhhhhcCC----------CcEEEEEEcCCccC
Q 021087 204 FANQVFANKADDGKGRQMPIHYG-SKKLNYITISSPIATQLPQAVGVAYSLKMEKK----------DACAVAYTGDGGTS 272 (317)
Q Consensus 204 ~~~q~~G~~~g~~kGr~mp~H~~-s~~~~i~~~sg~lGtqlp~AvG~A~A~kl~g~----------~~vvv~~~GDGats 272 (317)
-+.. |.+. |...+.|.- ....++...+|++|+++|.|+|+|+|.|+++. ++.|+|++|||+++
T Consensus 127 ~l~~-~r~~-----~s~~~ghp~~~~~~gve~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~d~~vv~i~GDG~l~ 200 (711)
T 3uk1_A 127 ELKN-FRQL-----HSKTPGHPEYGITPGVETTTGPLGQGLANAVGMALGEALLAAEFNRDDAKIVDHHTYVFLGDGCLM 200 (711)
T ss_dssp HHHT-TTST-----TCSCCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHH
T ss_pred HHHh-hccc-----cCCCCCCCCCCCCCCcccCccchhhHHHHHHHHHHHHHhhcccccccccccCCCeEEEEECCcchh
Confidence 3444 3443 333456763 34568888999999999999999999998763 78999999999999
Q ss_pred ccchHHHHHHHHHHcCCC-EEEEEecCCccccccccccc
Q 021087 273 EQLWKPLSSSSVATMAGP-LVPIYQNNFEAMVLLLRVVH 310 (317)
Q Consensus 273 eGdfhE~ALN~Aa~~~lP-vVFV~eNNgyAIStP~~~~~ 310 (317)
||.+|| |||+|+.++|| +|+||+||+|+|++++..+.
T Consensus 201 eG~~~E-al~~A~~~~L~~livI~dnN~~~i~~~~~~~~ 238 (711)
T 3uk1_A 201 EGISHE-ACSLAGTLKLNKLIALYDDNGISIDGDVVNWF 238 (711)
T ss_dssp SHHHHH-HHHHHHHTTCTTEEEEEEECSEETTEEGGGTC
T ss_pred hccHHH-HHHHHHHhCCCcEEEEEECCCcccccchhhhc
Confidence 999999 99999999998 99999999999999987763
No 19
>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus}
Probab=99.71 E-value=1.7e-17 Score=171.13 Aligned_cols=163 Identities=15% Similarity=0.137 Sum_probs=118.0
Q ss_pred HHHHHHHHHHHHHHHhcCcccccccCCchHHHHHHHHhcc--C-------CCCeeecC--Cch---HHHHHHhCC-CHHH
Q 021087 139 MVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAAL--S-------ADDFILPQ--YRE---PGVLLWRGY-TLQQ 203 (317)
Q Consensus 139 M~~~R~~D~~~~~lqrqGrigfy~~~~GqEA~~VG~a~AL--~-------~~D~v~~~--YR~---~g~~l~rG~-~l~~ 203 (317)
...+|.+-..+......|++|..++.. |.+.+.....| + +.|.++.+ |-. .+++...|+ -..+
T Consensus 12 a~~iR~~~~~~v~~a~~GH~g~~l~~~--~i~~~L~~~~~~~~p~~p~~~~rDr~vls~GH~~~~lYa~l~l~G~~~~~~ 89 (651)
T 2e6k_A 12 VNAIRFLAIDAVEKARSGHPGMPMGMA--PLAYLLFREVMRHNPLDPDWPDRDRFVLSAGHGSMLLYAVLHLTGYDLPLE 89 (651)
T ss_dssp HHHHHHHHHHHHHHHTCSCCHHHHHHH--HHHHHHHHTTCCCCTTCTTCTTSCEEEESSGGGHHHHHHHHHHTTCSCCHH
T ss_pred HHHHHHHHHHHHHHcCCCccCcchhHH--HHHHHHHHHHhcCCccCCCCCCCCeEEEeCcchhHHHHHHHHHhCCCCCHH
Confidence 445666655566655678877665555 55544443334 3 23766544 555 446667787 2233
Q ss_pred HHHHHhhCCCCCCCCCCCCcccC-CCCCcccccCCCCCCCchhhhhHHhhhhhcC----------CCcEEEEEEcCCccC
Q 021087 204 FANQVFANKADDGKGRQMPIHYG-SKKLNYITISSPIATQLPQAVGVAYSLKMEK----------KDACAVAYTGDGGTS 272 (317)
Q Consensus 204 ~~~q~~G~~~g~~kGr~mp~H~~-s~~~~i~~~sg~lGtqlp~AvG~A~A~kl~g----------~~~vvv~~~GDGats 272 (317)
-|.. |.+. |...+.|.. ....++...+|++|+++|.|+|+|+|.|+++ .++.|+|++|||+++
T Consensus 90 ~l~~-~r~~-----~~~~~ghp~~~~~~g~~~~~G~lG~gl~~AvG~A~A~~~~~~~~~~~~~~~~~~~v~~~~GDG~~~ 163 (651)
T 2e6k_A 90 ELKS-FRQW-----GSKTPGHPERGHTPGVEVTTGPLGQGISTAVGLALAERKLAAEFNRPGHVVVDHYTYVLASDGDLM 163 (651)
T ss_dssp HHTT-TTST-----TCSCCSSCCBTTBTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHH
T ss_pred HHHH-hhcc-----CCCCCCCCCCCCCCCeeeccccccchHHHHHHHHHHHHhhcccccccccCCCCCEEEEEEChhhhc
Confidence 3433 3333 222345654 2346889999999999999999999999765 688999999999999
Q ss_pred ccchHHHHHHHHHHcCCC-EEEEEecCCccccccccccc
Q 021087 273 EQLWKPLSSSSVATMAGP-LVPIYQNNFEAMVLLLRVVH 310 (317)
Q Consensus 273 eGdfhE~ALN~Aa~~~lP-vVFV~eNNgyAIStP~~~~~ 310 (317)
||.+|| |||+|+.++|| +||||+||+|+|++++..+.
T Consensus 164 eG~~~E-al~~A~~~~L~~li~i~~nN~~~i~~~~~~~~ 201 (651)
T 2e6k_A 164 EGVSGE-AASLAGHWGLSKLIVFWDDNRISIDGPTDLAF 201 (651)
T ss_dssp SHHHHH-HHHHHHHTTCTTEEEEEEECCEETTEEGGGTC
T ss_pred hhHHHH-HHHHHHHcCCCeEEEEEECCCccccccccccc
Confidence 999999 99999999998 99999999999999987654
No 20
>2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate, glycolysis, MAG metal-binding, oxidoreductase, thiamine pyrophosphate; HET: TDK; 1.77A {Escherichia coli} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2qta_A* 1l8a_A* 1rp7_A* 2g25_A* 2g28_A* 2g67_A 2iea_A* 3lpl_A* 3lq2_A* 3lq4_A*
Probab=99.70 E-value=4.2e-17 Score=173.77 Aligned_cols=163 Identities=13% Similarity=0.069 Sum_probs=122.5
Q ss_pred HHHHHHHHHHHHHH-Hh-----cCcccccccCCchHHHHHHHHhccC------CCCeeecC-Cch---HHHHHHhCCCHH
Q 021087 139 MVTLQVMDSVLYEA-QR-----QGRFSFYLTTIGEEAINIGSAAALS------ADDFILPQ-YRE---PGVLLWRGYTLQ 202 (317)
Q Consensus 139 M~~~R~~D~~~~~l-qr-----qGrigfy~~~~GqEA~~VG~a~AL~------~~D~v~~~-YR~---~g~~l~rG~~l~ 202 (317)
...+|.+-..+... .+ .|++|.+++.. |...++....|+ ++|+|+.. |-. +++++..|+-..
T Consensus 82 a~~iR~~~i~~v~~a~~~~~~~gGH~gs~ls~a--el~~~l~~~~~~~~~~~~~~D~V~~~GH~sp~~Ya~~~l~Gr~~~ 159 (886)
T 2qtc_A 82 RSAIRWNAIMTVLRASKKDLELGGHMASFQSSA--TIYDVCFNHFFRARNEQDGGDLVYFQGHISPGVYARAFLEGRLTQ 159 (886)
T ss_dssp HHHHHHHHHHHHHHHHHTCSCCCCCSHHHHHHH--HHHHHHHHHTCCCCCSSSCCCEEECCGGGHHHHHHHHHHTTSSCH
T ss_pred HHHHHHHHHHHHHHhcCCCCCCccCcCCcHHHH--HHHHHHHHHhcCCCCCCCCCCEEEEcchhHHHHHHHHHHhCCCCH
Confidence 34455554444443 22 58888888777 888877777787 57876664 555 446888897555
Q ss_pred HHHHHHhhCCCCCCCCCCCCcccCCC-CC-cccccCCCCCCCchhhhhHHhhhhh-------cCCCcEEEEEEcCCccCc
Q 021087 203 QFANQVFANKADDGKGRQMPIHYGSK-KL-NYITISSPIATQLPQAVGVAYSLKM-------EKKDACAVAYTGDGGTSE 273 (317)
Q Consensus 203 ~~~~q~~G~~~g~~kGr~mp~H~~s~-~~-~i~~~sg~lGtqlp~AvG~A~A~kl-------~g~~~vvv~~~GDGatse 273 (317)
+-|.. |-+... +.+.|.|..-. .. ++...++++|++++.|+|+|++.|+ ++.++.|+|++|||+++|
T Consensus 160 e~l~~-fRq~~~---~~gl~~~p~~~~~p~~~~~~tG~~G~g~s~AiG~A~a~~~l~~~~~~~~~~~~v~aviGDG~l~e 235 (886)
T 2qtc_A 160 EQLDN-FRQEVH---GNGLSSYPHPKLMPEFWQFPTVSMGLGPIGAIYQAKFLKYLEHRGLKDTSKQTVYAFLGDGEMDE 235 (886)
T ss_dssp HHHTT-BTCCTT---SSCBCSSCCTTTSTTTCCCCCCSTTHHHHHHHHHHHHHHHHHHTTSCCCTTCCEEEEEETGGGGS
T ss_pred HHHHh-ccCCCC---CCCCCCCCCcccCCCcccccccccCccHHHHHHHHHHhhhhcccccccCCCCEEEEEECCccccc
Confidence 55555 333211 23455554321 12 4788899999999999999999998 788999999999999999
Q ss_pred cchHHHHHHHHHHcCCC-EEEEEecCCccccccccc
Q 021087 274 QLWKPLSSSSVATMAGP-LVPIYQNNFEAMVLLLRV 308 (317)
Q Consensus 274 GdfhE~ALN~Aa~~~lP-vVFV~eNNgyAIStP~~~ 308 (317)
|.+|| |||+|+.++|+ +||||+||+|+|+.|+..
T Consensus 236 G~~~E-Al~~A~~~~L~nli~Vvn~N~~si~~~v~~ 270 (886)
T 2qtc_A 236 PESKG-AITIATREKLDNLVFVINCNLQRLDGPVTG 270 (886)
T ss_dssp HHHHT-THHHHHHTTCTTEEEEEEECSBCSSSBSCT
T ss_pred cchHH-HHHHHHHcCCCcEEEEEECCCcccCCCccc
Confidence 99999 99999999996 999999999999999876
No 21
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*
Probab=99.70 E-value=3e-17 Score=169.79 Aligned_cols=163 Identities=17% Similarity=0.147 Sum_probs=119.1
Q ss_pred HHHHHHHHHHHHHHHhcCcccccccCCchHHHHHHHHhcc--CC-------CCeeecC--Cch---HHHHHHhCC-CHHH
Q 021087 139 MVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAAL--SA-------DDFILPQ--YRE---PGVLLWRGY-TLQQ 203 (317)
Q Consensus 139 M~~~R~~D~~~~~lqrqGrigfy~~~~GqEA~~VG~a~AL--~~-------~D~v~~~--YR~---~g~~l~rG~-~l~~ 203 (317)
...+|.+-..+......|++|..++.. |.+.+.....| +| .|.++.+ |-. .+++...|+ -..+
T Consensus 8 a~~iR~~~~~~v~~a~~GH~g~~l~~~--~i~~~L~~~~~~~~~~~p~~~~rDr~v~s~GH~~~~lYa~~~l~G~~~~~~ 85 (669)
T 2r8o_A 8 ANAIRALSMDAVQKAKSGHPGAPMGMA--DIAEVLWRDFLKHNPQNPSWADRDRFVLSNGHGSMLIYSLLHLTGYDLPME 85 (669)
T ss_dssp HHHHHHHHHHHHHHHTCSCCHHHHHHH--HHHHHHHHHTCCCCTTCTTCTTCCEEEESSGGGHHHHHHHHHHHTCSCCHH
T ss_pred HHHHHHHHHHHHHHcCCCccCCchhHH--HHHHHHHHHhhcCCcCCCCCCCCCeEEEeCccHHHHHHHHHHHcCCCCCHH
Confidence 445666655666655688887666555 55554443434 43 4766554 555 445667787 2233
Q ss_pred HHHHHhhCCCCCCCCCCCCcccC-CCCCcccccCCCCCCCchhhhhHHhhhhhcC----------CCcEEEEEEcCCccC
Q 021087 204 FANQVFANKADDGKGRQMPIHYG-SKKLNYITISSPIATQLPQAVGVAYSLKMEK----------KDACAVAYTGDGGTS 272 (317)
Q Consensus 204 ~~~q~~G~~~g~~kGr~mp~H~~-s~~~~i~~~sg~lGtqlp~AvG~A~A~kl~g----------~~~vvv~~~GDGats 272 (317)
-+.. |.+. |...|.|.. ....++...+|++|+++|.|+|+|+|.++++ .++.|+|++|||+++
T Consensus 86 ~l~~-~r~~-----~~~~~ghp~~~~~~g~~~~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~v~~~~GDG~~~ 159 (669)
T 2r8o_A 86 ELKN-FRQL-----HSKTPGHPEVGYTAGVETTTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMM 159 (669)
T ss_dssp HHTT-TTST-----TCSCCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHH
T ss_pred HHHH-hhcC-----CCCCCCCCCccCCCCcccccccccchHHHHHHHHHHHHHhccccccCccCCcCCeEEEEECHhHhc
Confidence 3333 3333 333356764 3356899999999999999999999999764 478999999999999
Q ss_pred ccchHHHHHHHHHHcCCC-EEEEEecCCccccccccccc
Q 021087 273 EQLWKPLSSSSVATMAGP-LVPIYQNNFEAMVLLLRVVH 310 (317)
Q Consensus 273 eGdfhE~ALN~Aa~~~lP-vVFV~eNNgyAIStP~~~~~ 310 (317)
||.+|| |||+|+.++|| +||||+||+|+|++|+..+.
T Consensus 160 eG~~~E-al~~A~~~~L~~li~i~~nN~~~i~~~~~~~~ 197 (669)
T 2r8o_A 160 EGISHE-VCSLAGTLKLGKLIAFYDDNGISIDGHVEGWF 197 (669)
T ss_dssp SHHHHH-HHHHHHHTTCTTEEEEEEECSEETTEEGGGTC
T ss_pred chHHHH-HHHHHHHcCCCcEEEEEECCCcEecccccccc
Confidence 999999 99999999998 99999999999999987653
No 22
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A*
Probab=99.69 E-value=4.4e-17 Score=169.61 Aligned_cols=160 Identities=19% Similarity=0.184 Sum_probs=120.9
Q ss_pred HHHHHHHHHHHHHHhcCcccccccCCchHHHHHHHHhccC---------CCCeeecC--Cch---HHHHHHhCC--CHHH
Q 021087 140 VTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALS---------ADDFILPQ--YRE---PGVLLWRGY--TLQQ 203 (317)
Q Consensus 140 ~~~R~~D~~~~~lqrqGrigfy~~~~GqEA~~VG~a~AL~---------~~D~v~~~--YR~---~g~~l~rG~--~l~~ 203 (317)
..+|.+-..+......|++|.-++.. |.+.+.....|+ +.|.++.+ |-. .+++...|+ +.++
T Consensus 35 ~~iR~~~~~~v~~a~~GH~g~~l~~~--~i~~~L~~~~l~~~p~~p~~~~rDrfvls~GH~~~~lYa~l~l~G~~~~~~~ 112 (690)
T 3m49_A 35 NTIRTLSIDAIEKANSGHPGMPMGAA--PMAYTLWTQFMKHNPNNPTWFNRDRFVLSAGHGSMLLYSLLHLSGYDVTMDD 112 (690)
T ss_dssp HHHHHHHHHHHHHHTCSCCHHHHHHH--HHHHHHHHHTCCCCTTCTTCTTSCEEEESSGGGHHHHHHHHHHTTSSCCHHH
T ss_pred HHHHHHHHHHHHhcCCCCCCcchHHH--HHHHHHHHHHhcCCCCCCCCCCCCeEEECCccHHHHHHHHHHHHCCCCCHHH
Confidence 35666666666656678887666666 666655556775 46877665 444 235566786 4554
Q ss_pred HHHHHhhCCCCCCCCCCCCcccC-CCCCcccccCCCCCCCchhhhhHHhhhhhcCC----------CcEEEEEEcCCccC
Q 021087 204 FANQVFANKADDGKGRQMPIHYG-SKKLNYITISSPIATQLPQAVGVAYSLKMEKK----------DACAVAYTGDGGTS 272 (317)
Q Consensus 204 ~~~q~~G~~~g~~kGr~mp~H~~-s~~~~i~~~sg~lGtqlp~AvG~A~A~kl~g~----------~~vvv~~~GDGats 272 (317)
+.. |.+. |...|.|.. ....++...+|++|+++|.|+|+|+|.|+++. ++.|+|++|||+++
T Consensus 113 -l~~-~rq~-----gs~~~Ghp~~~~~pgv~~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~d~~v~~i~GDG~l~ 185 (690)
T 3m49_A 113 -LKN-FRQW-----GSKTPGHPEYGHTAGVDATTGPLGQGIATAVGMAMAERHLAAKYNRDAYNIVDHYTYAICGDGDLM 185 (690)
T ss_dssp -HTT-TTCT-----TCSSCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCSCCCEEEEECHHHHH
T ss_pred -HHh-hccC-----CCCCCCCCCCCCCCccccCCccccccHHHHHHHHHHHHHhhccccccccccCCCeEEEEECchhhh
Confidence 433 3333 444556764 34568888999999999999999999997653 88999999999999
Q ss_pred ccchHHHHHHHHHHcCCC-EEEEEecCCcccccccccc
Q 021087 273 EQLWKPLSSSSVATMAGP-LVPIYQNNFEAMVLLLRVV 309 (317)
Q Consensus 273 eGdfhE~ALN~Aa~~~lP-vVFV~eNNgyAIStP~~~~ 309 (317)
||.+|| |+|+|+.++|| +|+|++||+|+|+.++...
T Consensus 186 eG~~~E-al~~A~~~~L~~livI~dnN~~~i~~~~~~~ 222 (690)
T 3m49_A 186 EGVSAE-ASSLAAHLQLGRLVVLYDSNDISLDGDLNRS 222 (690)
T ss_dssp SHHHHH-HHHHHHHTTCTTEEEEEEECSBCSSSBGGGT
T ss_pred hccHHH-HHHHHHHhCCCeEEEEEECCCeecccchhhc
Confidence 999999 99999999997 9999999999999998654
No 23
>3ahc_A Phosphoketolase, xylulose 5-phosphate/fructose 6-phosphate phospho; thiamine diphosphate-dependent enzyme, alpha-beta fold; HET: TPP 2PE; 1.70A {Bifidobacterium breve} PDB: 3ahd_A* 3ahe_A* 3ahf_A* 3ahj_A* 3ahi_A* 3ahh_A* 3ahg_A* 3ai7_A*
Probab=98.93 E-value=1.1e-09 Score=116.10 Aligned_cols=83 Identities=17% Similarity=0.177 Sum_probs=75.7
Q ss_pred CCcccCCCCCcccccCCCCCCCchhhhhHHhhhhhcCCCcEEEEEEcCCccCccc---hHHHHHHHHHHcCCC-EEEEEe
Q 021087 221 MPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEQL---WKPLSSSSVATMAGP-LVPIYQ 296 (317)
Q Consensus 221 mp~H~~s~~~~i~~~sg~lGtqlp~AvG~A~A~kl~g~~~vvv~~~GDGatseGd---fhE~ALN~Aa~~~lP-vVFV~e 296 (317)
.|.|....-.|+...+|+||.++++|+|+|+ .+.+..|+|++|||+..+|. .|| +.++|+.+++. ||.|++
T Consensus 159 ~pgHp~~~tpGve~~tG~LGqGls~AvG~A~----~~~~~~v~~~~GDGe~e~GsLAg~we-a~~~~~~~~l~nl~~i~D 233 (845)
T 3ahc_A 159 IPSHFAPETPGSIHEGGELGYALSHAYGAVM----NNPSLFVPCIIGDGEAETGPLATGWQ-SNKLVNPRTDGIVLPILH 233 (845)
T ss_dssp BCSSCCTTSTTCSCCCSSTTCHHHHHHHHHT----TCTTCEEEEEEETTGGGSHHHHHHGG-GGGSCCTTTSCEEEEEEE
T ss_pred CCCCCCCCCCCeecCCCCccchHhHHhhhhh----cCCCCeEEEEECCCchhhhcchhhhH-HhhhhhhhcCCCEEEEEE
Confidence 7889865668999999999999999999995 45678999999999999999 999 99999999995 999999
Q ss_pred cCCccccccccc
Q 021087 297 NNFEAMVLLLRV 308 (317)
Q Consensus 297 NNgyAIStP~~~ 308 (317)
+|+|+|+.|+..
T Consensus 234 ~N~~~i~g~t~l 245 (845)
T 3ahc_A 234 LNGYKIANPTIL 245 (845)
T ss_dssp ECSBSSSSBCHH
T ss_pred CCCCcCCCCccc
Confidence 999999999964
No 24
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A*
Probab=98.73 E-value=2e-09 Score=108.01 Aligned_cols=68 Identities=15% Similarity=0.111 Sum_probs=58.3
Q ss_pred cCCCCCCCchhhhhHHhhhhhcCCCcEEEEEEcCCccCccchHHHHHHHHHHcCCCEEEEEecC-Ccccccc
Q 021087 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNN-FEAMVLL 305 (317)
Q Consensus 235 ~sg~lGtqlp~AvG~A~A~kl~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~lPvVFV~eNN-gyAIStP 305 (317)
..+.+|.++|.|+|+|+|.+.+++++.|+|++|||+...+ ++ +|+.|+.+++|+++||.|| +|+|...
T Consensus 411 ~~g~mG~~l~~A~Gaala~~~~~~~~~vv~~~GDG~~~~~--~~-el~ta~~~~l~~~ivv~nN~~~~~~~~ 479 (563)
T 2vk8_A 411 LWGSIGFTTGATLGAAFAAEEIDPKKRVILFIGDGSLQLT--VQ-EISTMIRWGLKPYLFVLNNDGYTIQKL 479 (563)
T ss_dssp TTCCTTHHHHHHHHHHHHHHHHCTTCCEEEEEEHHHHHHH--GG-GHHHHHHTTCCCEEEEEESSSCHHHHH
T ss_pred chhhhhhHHHHHHHHHHhCcccCCCCCEEEEEcchHhhcc--HH-HHHHHHHcCCCcEEEEEECCcchhhhh
Confidence 4689999999999999999988888999999999999885 45 5999999999966666555 5998653
No 25
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Probab=98.69 E-value=3.8e-09 Score=107.33 Aligned_cols=61 Identities=15% Similarity=0.278 Sum_probs=51.4
Q ss_pred cCCCCCCCchhhhhHHhhhhhcCCCcEEEEEEcCCccCccchHHHHHHHHHHcCCCEEEEEecCC-ccc
Q 021087 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNNF-EAM 302 (317)
Q Consensus 235 ~sg~lGtqlp~AvG~A~A~kl~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~lPvVFV~eNNg-yAI 302 (317)
..+++|.++|.|+|++++.+ ++.|||++|||+++++ ++ +|++|+.+++|+++||.||+ |+|
T Consensus 418 ~~g~~G~~l~~A~Gaala~~----~~~vv~~~GDG~~~~~--~~-~l~~a~~~~lp~~~vv~nN~~~~~ 479 (603)
T 4feg_A 418 LFATMGVGIPGAIAAKLNYP----ERQVFNLAGDGGASMT--MQ-DLATQVQYHLPVINVVFTNCQYGF 479 (603)
T ss_dssp SSCCTTCHHHHHHHHHHHCT----TSCEEEEEEHHHHHHH--GG-GHHHHHHTTCCCEEEEEECSBCHH
T ss_pred ccccccchhHHHhhHHHhCC----CCcEEEEeccHHHhhh--HH-HHHHHHHHCcCeEEEEEECCchHH
Confidence 34788888888888888754 6789999999999997 45 59999999999888877775 987
No 26
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Probab=98.60 E-value=1.2e-08 Score=101.48 Aligned_cols=63 Identities=21% Similarity=0.258 Sum_probs=54.9
Q ss_pred CCCCCCchhhhhHHhhhhhcCCCcEEEEEEcCCccCccchHHHHHHHHHHcCCCEEEEEecC-Cccccccc
Q 021087 237 SPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNN-FEAMVLLL 306 (317)
Q Consensus 237 g~lGtqlp~AvG~A~A~kl~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~lPvVFV~eNN-gyAIStP~ 306 (317)
+.+|.++|.|+|+|+|.+ ++.|||++|||++..+ ++ +|+.|+.+++|+++||.|| +|+|....
T Consensus 401 g~~G~~l~~A~G~a~a~~----~~~vv~~~GDG~~~~~--~~-~l~~a~~~~l~~~ivv~nN~~~~~~~~~ 464 (528)
T 1q6z_A 401 GGLGFALPAAIGVQLAEP----ERQVIAVIGDGSANYS--IS-ALWTAAQYNIPTIFVIMNNGTYGALRWF 464 (528)
T ss_dssp CCTTSHHHHHHHHHHHCT----TSCEEEEEEHHHHTTT--GG-GHHHHHHHTCCCEEEEEECSBCHHHHHH
T ss_pred ccccchHHHHHHHHHhCC----CCcEEEEECCcHHHhh--HH-HHHHHHHhCCCeEEEEEeCCcchHhHHH
Confidence 899999999999999964 5679999999999988 68 8999999999987777666 59997654
No 27
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*
Probab=98.58 E-value=1.4e-08 Score=101.95 Aligned_cols=66 Identities=17% Similarity=0.164 Sum_probs=55.2
Q ss_pred CCCCCCCchhhhhHHhhhhhcCCCcEEEEEEcCCccCccchHHHHHHHHHHcCCCEEEEEe-cCCccccccc
Q 021087 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQ-NNFEAMVLLL 306 (317)
Q Consensus 236 sg~lGtqlp~AvG~A~A~kl~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~lPvVFV~e-NNgyAIStP~ 306 (317)
.+.+|.++|.|+|+|+|.| +.++.|+|++|||+...+ + + +|+.|+.+++|+++||. ||+|+|....
T Consensus 418 ~g~~G~~l~~AiGaa~a~~--~~~~~vv~i~GDG~~~~~-~-~-~L~ta~~~~l~~~ivv~nN~~~~~~~~~ 484 (563)
T 2uz1_A 418 LGSMGVGFGTALGAQVADL--EAGRRTILVTGDGSVGYS-I-G-EFDTLVRKQLPLIVIIMNNQSWGATLHF 484 (563)
T ss_dssp TCCTTTHHHHHHHHHHHHH--HHTCEEEEEEEHHHHGGG-T-T-HHHHHHHHTCCCEEEEEECSBCHHHHHH
T ss_pred CccccChHHHHHHHHHHhh--CCCCeEEEEEccHHHhCC-H-H-HHHHHHHhCCCeEEEEEeCCcchHHHHH
Confidence 5889999999999999986 557889999999999987 4 5 69999999999665555 5569987653
No 28
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}
Probab=98.56 E-value=1.4e-08 Score=103.04 Aligned_cols=65 Identities=20% Similarity=0.226 Sum_probs=53.7
Q ss_pred ccCCCCCCCchhhhhHHhhhhhcCCCcEEEEEEcCCccCccchHHHHHHHHHHcCCCEEEEEecC-Ccccccc
Q 021087 234 TISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNN-FEAMVLL 305 (317)
Q Consensus 234 ~~sg~lGtqlp~AvG~A~A~kl~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~lPvVFV~eNN-gyAIStP 305 (317)
+..|++|.++|.|+|+|+|.+ ++.|||++|||+...+ .+ +|+.|+.+++|+++||.|| +|+|...
T Consensus 439 g~~G~~G~~l~~AiGaala~~----~~~vv~i~GDGs~~~~--~~-~L~ta~~~~l~~~ivv~NN~~~~~~~~ 504 (616)
T 2pan_A 439 GQAGPLGWTIPAALGVCAADP----KRNVVAISGDFDFQFL--IE-ELAVGAQFNIPYIHVLVNNAYLGLIRQ 504 (616)
T ss_dssp TTTCCTTCHHHHHHHHHHHCT----TCEEEEEEEHHHHHHT--GG-GHHHHHHTTCCCEEEEEECSBCHHHHH
T ss_pred CCcccccchHHHHHHHHHhCC----CCcEEEEEcchhhhCC--HH-HHHHHHHhCCCeEEEEEECCcchHHHH
Confidence 345889999999999999964 6789999999999986 45 6999999999976555555 5998654
No 29
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*
Probab=98.55 E-value=2.2e-08 Score=101.39 Aligned_cols=65 Identities=17% Similarity=0.223 Sum_probs=55.0
Q ss_pred cCCCCCCCchhhhhHHhhhhhcCCCcEEEEEEcCCccCccchHHHHHHHHHHcCCCEEEEEecC-Cccccccc
Q 021087 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNN-FEAMVLLL 306 (317)
Q Consensus 235 ~sg~lGtqlp~AvG~A~A~kl~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~lPvVFV~eNN-gyAIStP~ 306 (317)
..+.+|.++|.|+|+|+|.+ ++.|+|++|||+...+ ++ +|+.|+.+++|+++||-|| +|+|....
T Consensus 411 ~~g~mG~~l~~AiGaala~~----~~~vv~i~GDG~~~~~--~~-~L~ta~~~~l~~~ivv~NN~~~~~~~~~ 476 (590)
T 1v5e_A 411 LFATMGIAIPGGLGAKNTYP----DRQVWNIIGDGAFSMT--YP-DVVTNVRYNMPVINVVFSNTEYAFIKNK 476 (590)
T ss_dssp SSCCTTCHHHHHHHHHHHCT----TSCEEEEEEHHHHHHH--GG-GHHHHHHTTCCCEEEEEECSSCTTGGGT
T ss_pred CCCcccChHHHHHHHHHhCC----CCeEEEEEechHHhch--HH-HHHHHHHhCCCCEEEEEECCchHHHHHH
Confidence 46899999999999999964 6779999999999987 47 8999999999966666555 79998654
No 30
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Probab=98.49 E-value=4.4e-08 Score=98.53 Aligned_cols=65 Identities=14% Similarity=0.094 Sum_probs=53.4
Q ss_pred ccCCCCCCCchhhhhHHhhhhhcCCCcEEEEEEcCCccCccchHHHHHHHHHHcCCCEEEEE-ecCCcccccc
Q 021087 234 TISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLSSSSVATMAGPLVPIY-QNNFEAMVLL 305 (317)
Q Consensus 234 ~~sg~lGtqlp~AvG~A~A~kl~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~lPvVFV~-eNNgyAIStP 305 (317)
...+.+|.++|.|+|+|+|.+ ++.|||++|||+...+ + + +|+.|+.+++|+++|| +||+|+|...
T Consensus 422 ~~~g~mG~~l~~A~Gaala~~----~~~vv~~~GDG~~~~~-~-~-eL~ta~~~~l~~~ivv~nN~~~~~~~~ 487 (570)
T 2vbf_A 422 PLWGSIGYTFPAALGSQIADK----ESRHLLFIGDGSLQLT-V-Q-ELGLSIREKLNPICFIINNDGYTVERE 487 (570)
T ss_dssp TTTCCTTTHHHHHHHHHHHCT----TSEEEEEEEHHHHHHH-G-G-GHHHHHHTTCCCEEEEEESSSCHHHHH
T ss_pred ccchhhhhhHHHHHHHHHhCC----CCcEEEEEcchhhhcC-H-H-HHHHHHHcCCCCEEEEEECCchHHHHH
Confidence 356889999999999999964 6789999999999885 4 4 5999999999955555 5557998653
No 31
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}
Probab=98.48 E-value=4.4e-08 Score=98.44 Aligned_cols=65 Identities=18% Similarity=0.196 Sum_probs=53.5
Q ss_pred cCCCCCCCchhhhhHHhhhhhcCCCcEEEEEEcCCccCccchHHHHHHHHHHcCCCEE-EEEecCCccccccc
Q 021087 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLSSSSVATMAGPLV-PIYQNNFEAMVLLL 306 (317)
Q Consensus 235 ~sg~lGtqlp~AvG~A~A~kl~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~lPvV-FV~eNNgyAIStP~ 306 (317)
..+.+|.++|.|+|+|+|.+ ++.|+|++|||++..+ + + +|+.|+.+++|++ +|++||+|+|....
T Consensus 407 ~~g~mG~~l~~A~G~ala~~----~~~vv~~~GDG~~~~~-~-~-eL~ta~~~~l~~~ivv~nN~~~~~~~~~ 472 (566)
T 2vbi_A 407 QWGHIGWSVPSAFGNAMGSQ----DRQHVVMVGDGSFQLT-A-Q-EVAQMVRYELPVIIFLINNRGYVIEIAI 472 (566)
T ss_dssp TTCCTTTHHHHHHHHHHTCT----TSEEEEEEEHHHHHHH-G-G-GHHHHHHTTCCCEEEEEECSSCHHHHTT
T ss_pred cccchhhHHHHHHHHHHhCC----CCcEEEEEcchHHHhh-H-H-HHHHHHHhCCCcEEEEEECCcceEEEee
Confidence 45789999999999999864 6789999999999885 4 4 5999999999955 55556679998654
No 32
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=98.48 E-value=4.2e-08 Score=99.16 Aligned_cols=63 Identities=22% Similarity=0.283 Sum_probs=52.5
Q ss_pred cCCCCCCCchhhhhHHhhhhhcCCCcEEEEEEcCCccCccchHHHHHHHHHHcCCCEEEEE-ecCCccccc
Q 021087 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLSSSSVATMAGPLVPIY-QNNFEAMVL 304 (317)
Q Consensus 235 ~sg~lGtqlp~AvG~A~A~kl~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~lPvVFV~-eNNgyAISt 304 (317)
..+++|.++|.|+|+|+|.+ ++.|||++|||+...+ .+ +|+.|+.+++|+++|| +||+|+|..
T Consensus 424 ~~G~~G~~l~~AiGaala~~----~~~vv~i~GDGs~~~~--~~-~L~ta~~~~l~~~ivv~NN~~~~~~~ 487 (590)
T 1ybh_A 424 GLGAMGFGLPAAIGASVANP----DAIVVDIDGDGSFIMN--VQ-ELATIRVENLPVKVLLLNNQHLGMVM 487 (590)
T ss_dssp SSCCTTCHHHHHHHHHHHCT----TSCEEEEEEHHHHHHT--TT-HHHHHHHTTCCEEEEEEECSBCHHHH
T ss_pred CcccccchHHHHHHHHHhCC----CCcEEEEEccchhhcc--HH-HHHHHHHhCCCcEEEEEECCcchHHH
Confidence 45899999999999999975 6789999999999986 45 6999999999965555 555799864
No 33
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=98.45 E-value=5.1e-08 Score=98.20 Aligned_cols=65 Identities=17% Similarity=0.184 Sum_probs=53.9
Q ss_pred cCCCCCCCchhhhhHHhhhhhcCCCcEEEEEEcCCccCccchHHHHHHHHHHcCCCEEEEEecC-Cccccccc
Q 021087 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNN-FEAMVLLL 306 (317)
Q Consensus 235 ~sg~lGtqlp~AvG~A~A~kl~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~lPvVFV~eNN-gyAIStP~ 306 (317)
..+.+|.++|.|+|+|+|.+ ++.|+|++|||+...+ + + +|+.|+.+++|+++||-|| +|+|....
T Consensus 418 g~g~mG~~l~~AiGaala~~----~~~vv~i~GDG~~~~~-~-~-~L~ta~~~~l~~~ivv~nN~~~~~~~~~ 483 (566)
T 1ozh_A 418 GQQTMGVALPWAIGAWLVNP----ERKVVSVSGDGGFLQS-S-M-ELETAVRLKANVLHLIWVDNGYNMVAIQ 483 (566)
T ss_dssp TTCCTTCHHHHHHHHHHHST----TSEEEEEEEHHHHHHH-T-T-HHHHHHHHTCCEEEEEEECSBCHHHHHH
T ss_pred CcccccchHHHHHHHHHhCC----CCCEEEEEcChHHhcc-H-H-HHHHHHHhCCCcEEEEEECCchhHHHHH
Confidence 35889999999999999965 6789999999999885 4 5 6999999999977666555 69987643
No 34
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*
Probab=98.45 E-value=6.1e-08 Score=97.40 Aligned_cols=65 Identities=15% Similarity=0.205 Sum_probs=53.8
Q ss_pred cCCCCCCCchhhhhHHhhhhhcCCCcEEEEEEcCCccCccchHHHHHHHHHHcCCCEE-EEEecCCccccccc
Q 021087 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLSSSSVATMAGPLV-PIYQNNFEAMVLLL 306 (317)
Q Consensus 235 ~sg~lGtqlp~AvG~A~A~kl~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~lPvV-FV~eNNgyAIStP~ 306 (317)
..+.+|.++|.|+|+|+|.+ ++.|+|++|||+...+ +. +|+.|+.+++|++ +|++||+|+|....
T Consensus 411 ~~g~~G~~l~~A~G~ala~~----~~~vv~i~GDGs~~~~-~~--el~ta~~~~l~~~ivv~NN~~~~~~~~~ 476 (568)
T 2wvg_A 411 QWGHIGWSVPAAFGYAVGAP----ERRNILMVGDGSFQLT-AQ--EVAQMVRLKLPVIIFLINNYGYTIEVMI 476 (568)
T ss_dssp TTCCTTTHHHHHHHHHHHCT----TSEEEEEEEHHHHHHH-GG--GHHHHHHTTCCCEEEEEECSSCHHHHTT
T ss_pred CcchhhhHHHHHHHHHHhCC----CCcEEEEEcChhHhcc-HH--HHHHHHHcCCCcEEEEEECCcceEeeee
Confidence 45789999999999999964 6789999999999884 44 5999999999965 55566779998654
No 35
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Probab=98.44 E-value=5.2e-08 Score=98.18 Aligned_cols=65 Identities=22% Similarity=0.380 Sum_probs=53.6
Q ss_pred cCCCCCCCchhhhhHHhhhhhcCCCcEEEEEEcCCccCccchHHHHHHHHHHcCCCEEEEE-ecCCccccccc
Q 021087 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLSSSSVATMAGPLVPIY-QNNFEAMVLLL 306 (317)
Q Consensus 235 ~sg~lGtqlp~AvG~A~A~kl~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~lPvVFV~-eNNgyAIStP~ 306 (317)
..+++|.++|.|+|+|+|.+ ++.|+|++|||+...+ ++ +|+.|+.+++|+++|| +||+|+|....
T Consensus 434 g~g~mG~~l~~AiGaa~a~~----~~~vv~i~GDG~~~~~--~~-~L~~a~~~~l~~~ivv~NN~~~~~~~~~ 499 (573)
T 2iht_A 434 GCSSFGYGIPAAIGAQMARP----DQPTFLIAGDGGFHSN--SS-DLETIARLNLPIVTVVVNNDTNGLIELY 499 (573)
T ss_dssp SSCCTTCHHHHHHHHHHHST----TSCEEEEEEHHHHHHT--GG-GHHHHHHHTCCCEEEEEECSBCHHHHHH
T ss_pred CCcccccHHHHHHHHHHhCC----CCcEEEEEccHHHHhH--HH-HHHHHHHhCCCeEEEEEECCcchhhHHH
Confidence 35889999999999999964 6779999999999986 45 6999999999965555 55569987753
No 36
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
Probab=98.44 E-value=4.1e-08 Score=98.07 Aligned_cols=63 Identities=17% Similarity=0.129 Sum_probs=52.0
Q ss_pred cCCCCCCCchhhhhHHhhhhhcCCCcEEEEEEcCCccCccchHHHHHHHHHHcCCCEEEEEecC-Cccccc
Q 021087 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNN-FEAMVL 304 (317)
Q Consensus 235 ~sg~lGtqlp~AvG~A~A~kl~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~lPvVFV~eNN-gyAISt 304 (317)
..+++|.++|.|+|+|+|.+ ++.|||++|||+...+ ++ +|+.|+.+++|+++||.|| +|+|..
T Consensus 406 ~~g~mG~~l~~A~G~a~a~~----~~~vv~~~GDG~~~~~--~~-el~ta~~~~l~~~ivv~nN~~~~~~~ 469 (552)
T 1ovm_A 406 LWGSIGYTLAAAFGAQTACP----NRRVIVLTGDGAAQLT--IQ-ELGSMLRDKQHPIILVLNNEGYTVER 469 (552)
T ss_dssp TTCCTTHHHHHHHHHHHHCT----TSCEEEEEEHHHHHHH--TT-HHHHHHHTTCCCEEEEEESSSCHHHH
T ss_pred hhHhhhhHHHHHHHHHHhCC----CCcEEEEECchHHHhH--HH-HHHHHHHhCCCCEEEEEECCCCeEEE
Confidence 46889999999999999964 6789999999999875 44 5999999999966665555 699874
No 37
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Probab=98.42 E-value=5.3e-08 Score=98.49 Aligned_cols=64 Identities=16% Similarity=0.132 Sum_probs=53.6
Q ss_pred CCCCCCCchhhhhHHhhhhhcCCCcEEEEEEcCCccCccchHHHHHHHHHHcCCCEEEEEecC-Cccccccc
Q 021087 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNN-FEAMVLLL 306 (317)
Q Consensus 236 sg~lGtqlp~AvG~A~A~kl~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~lPvVFV~eNN-gyAIStP~ 306 (317)
.+++|.++|.|+|+|+|.+ ++.|+|++|||+...+ .+ +|+.|+.+++|+++||-|| +|+|....
T Consensus 423 ~g~mG~~l~~AiGaala~~----~~~vv~i~GDG~~~~~--~~-~L~ta~~~~l~~~ivv~nN~~~~~~~~~ 487 (589)
T 2pgn_A 423 EGILGCGFPMALGAQLAEP----NSRVFLGTGDGALYYH--FN-EFRVAVEHKLPVITMVFTNESYGANWTL 487 (589)
T ss_dssp TCCTTCHHHHHHHHHHHCT----TSCEEEEEEHHHHHHH--GG-GHHHHHHTTCCCEEEEEECSBCHHHHHH
T ss_pred cchhhhHHHHHHHHHHhCC----CCcEEEEEeeHHHHhh--HH-HHHHHHHhCCCeEEEEEECCCcccchHH
Confidence 4889999999999999964 6779999999999987 46 8999999999966665555 59987654
No 38
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Probab=98.36 E-value=1.4e-07 Score=97.71 Aligned_cols=64 Identities=19% Similarity=0.234 Sum_probs=52.1
Q ss_pred cCCCCCCCchhhhhHHhhhhhcCCCcEEEEEEcCCccCccchHHHHHHHHHHcCCCEEEE-EecCCcccccc
Q 021087 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLSSSSVATMAGPLVPI-YQNNFEAMVLL 305 (317)
Q Consensus 235 ~sg~lGtqlp~AvG~A~A~kl~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~lPvVFV-~eNNgyAIStP 305 (317)
..|++|.++|.|+|+|+|. .++.|||++|||+...+ +.| |+.|+.+++|+++| ++||+|+|...
T Consensus 511 ~~G~mG~~lpaAiGaalA~----p~~~Vv~i~GDGsf~~~-~~e--L~ta~~~~l~v~ivV~NN~~~g~~~~ 575 (677)
T 1t9b_A 511 GLGTMGYGLPAAIGAQVAK----PESLVIDIDGDASFNMT-LTE--LSSAVQAGTPVKILILNNEEQGMVTQ 575 (677)
T ss_dssp SSCCTTCHHHHHHHHHHHC----TTSEEEEEEEHHHHHHH-GGG--HHHHHHHTCCCEEEEEECSSCHHHHH
T ss_pred CcchhhchHHHHHHHHHhC----CCCeEEEEEeehHHhcc-HHH--HHHHHHhCCCeEEEEEeCCCchhhhh
Confidence 4478999999999999996 36789999999999885 444 99999999996554 55556998654
No 39
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A*
Probab=98.27 E-value=1.7e-07 Score=94.36 Aligned_cols=62 Identities=13% Similarity=0.111 Sum_probs=50.5
Q ss_pred CCCCCCCchhhhhHHhhhhhcCCCcEEEEEEcCCccCccchHHHHHHHHHHcCCCEEEEE-ecCCccccc
Q 021087 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLSSSSVATMAGPLVPIY-QNNFEAMVL 304 (317)
Q Consensus 236 sg~lGtqlp~AvG~A~A~kl~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~lPvVFV~-eNNgyAISt 304 (317)
.+.+|.++|.|+|+|+|.+ ++.|+|++|||+.. .-++ +|+.|+.+++|+++|| +||+|++..
T Consensus 421 ~g~mG~~l~~A~G~ala~~----~~~vv~i~GDG~~~--~~~~-~l~ta~~~~l~~~ivv~nN~~~~~~~ 483 (565)
T 2nxw_A 421 YAGMGFGVPAGIGAQCVSG----GKRILTVVGDGAFQ--MTGW-ELGNCRRLGIDPIVILFNNASWEMLR 483 (565)
T ss_dssp TCCTTCHHHHHHHHHHHTT----TCCEEEEEEHHHHH--HHGG-GGGGHHHHTCCCEEEEEECSBCHHHH
T ss_pred cccccccchHHHHHHHhCC----CCcEEEEEechHHH--hhHH-HHHHHHHhCCCCEEEEEECCCCcEEe
Confidence 4789999999999999964 56799999999998 3356 8999999999955555 555699853
No 40
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}
Probab=98.27 E-value=3e-07 Score=93.29 Aligned_cols=60 Identities=18% Similarity=0.150 Sum_probs=49.6
Q ss_pred CCCCCCchhhhhHHhhhhhcCCCcEEEEEEcCCccCccchHHHHHHHHHHcCCCEEEEE-ecCCccccc
Q 021087 237 SPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLSSSSVATMAGPLVPIY-QNNFEAMVL 304 (317)
Q Consensus 237 g~lGtqlp~AvG~A~A~kl~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~lPvVFV~-eNNgyAISt 304 (317)
+.+|.++|.|+|+|+|. ++.|||++|||+...+ +. +|+.|+.+++|+++|| +||+|+|..
T Consensus 455 ~~ig~~l~~AiGaala~-----~~~vv~i~GDGsf~~~-~~--eL~ta~~~~lp~~ivv~NN~~~~i~~ 515 (604)
T 2x7j_A 455 NGIDGVVSSAMGVCEGT-----KAPVTLVIGDLSFYHD-LN--GLLAAKKLGIPLTVILVNNDGGGIFS 515 (604)
T ss_dssp CCSSSHHHHHHHHHHHH-----TSCEEEEEEHHHHHHT-GG--GGHHHHHHCCCEEEEEEECSSCGGGG
T ss_pred CCcCcHHHHHHHHHhcC-----CCcEEEEEccHHHHhH-HH--HHHHhhhcCCCeEEEEEeCCCCcccc
Confidence 56899999999999993 5679999999999886 44 5999999999966555 555799854
No 41
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=98.25 E-value=3.4e-07 Score=91.73 Aligned_cols=63 Identities=29% Similarity=0.354 Sum_probs=49.8
Q ss_pred cCCCCCCCchhhhhHHhhhhhcCCCcEEEEEEcCCccCccchHHHHHHHHHHcCCCEEE-EEecCCccccc
Q 021087 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLSSSSVATMAGPLVP-IYQNNFEAMVL 304 (317)
Q Consensus 235 ~sg~lGtqlp~AvG~A~A~kl~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~lPvVF-V~eNNgyAISt 304 (317)
..+.+|..+|.|+|+|+|.+ ++.|||++|||+...+ .+ +|+.|+.+++|+++ |++||+|++..
T Consensus 404 ~~g~mG~~l~~AiGaala~~----~~~vv~i~GDGs~~~~--~~-~L~ta~~~~l~~~ivv~nN~~~g~~~ 467 (549)
T 3eya_A 404 NHGSMANAMPQALGAQATEP----ERQVVAMCGDGGFSML--MG-DFLSVVQMKLPVKIVVFNNSVLGFVA 467 (549)
T ss_dssp TTCCTTCHHHHHHHHHHHST----TSCEEEEEEHHHHHHT--GG-GHHHHHHTTCCCEEEEEECSBCCCC-
T ss_pred CCchhhhHHHHHHHHHHhCC----CCcEEEEEccchhhcc--HH-HHHHHHHhCCCeEEEEEeCCccHHHH
Confidence 34788999999999998864 6679999999999776 45 69999999999554 55555698753
No 42
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*
Probab=98.22 E-value=4.6e-07 Score=90.87 Aligned_cols=61 Identities=15% Similarity=0.071 Sum_probs=50.5
Q ss_pred ccCCCCCCCchhhhhHHhhhhhcCCCcEEEEEEcCCccCccchHHHHHHHHHHcCCCEEEEEecCC-c-cc
Q 021087 234 TISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNNF-E-AM 302 (317)
Q Consensus 234 ~~sg~lGtqlp~AvG~A~A~kl~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~lPvVFV~eNNg-y-AI 302 (317)
+..+++|.++|.|+|+|+| .++.|+|++|||+.... + + .|+.|+.+++|+++||-||+ | ++
T Consensus 418 g~~g~~G~~l~~AiGaa~a-----~~~~vv~i~GDGsf~~~-~-~-el~ta~~~~l~~~ivv~NN~~~~~~ 480 (564)
T 2q28_A 418 GTWGVMGIGMGYAIGASVT-----SGSPVVAIEGDSAFGFS-G-M-EIETICRYNLPVTIVIFNNGGIYRG 480 (564)
T ss_dssp TTTTCTTCHHHHHHHHHHH-----HCSCEEEEEEHHHHHTT-G-G-GHHHHHHTTCCEEEEEEECSBSSCS
T ss_pred CCCCcccchHHHHHHHhhc-----CCCcEEEEEcchHhhcc-H-H-HHHHHHHhCCCeEEEEEeCchhHHH
Confidence 3458899999999999998 36779999999999874 3 4 59999999999888777776 3 55
No 43
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Probab=98.21 E-value=3.7e-07 Score=91.75 Aligned_cols=61 Identities=23% Similarity=0.194 Sum_probs=45.5
Q ss_pred cCCCCCCCchhhhhHHhhhhhcCCCcEEEEEEcCCccCccchHHHHHHHHHHcCCCEEEEEecCC-ccccc
Q 021087 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNNF-EAMVL 304 (317)
Q Consensus 235 ~sg~lGtqlp~AvG~A~A~kl~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~lPvVFV~eNNg-yAISt 304 (317)
..|+.|. +|.|+|+|+| . ++.|||++|||+.... +.| |+.|+.+++|+++||.||+ |+|..
T Consensus 415 ~~g~~G~-l~~A~Gaa~a-~----~~~vv~i~GDGsf~~~-~~e--L~ta~~~~lpv~ivv~NN~~~~~~~ 476 (556)
T 3hww_A 415 ASGIDGL-LSTAAGVQRA-S----GKPTLAIVGDLSALYD-LNA--LALLRQVSAPLVLIVVNNNGGQIFS 476 (556)
T ss_dssp SCCSSSH-HHHHHHHHHH-H----CCCEEEEEEHHHHHHT-GGG--HHHHTTCSSCEEEEEEESCC-----
T ss_pred ccccccH-HHHHHHHHhc-C----CCcEEEEEccHHhhhc-chh--hHhhcccCCCcEEEEEECCCCCccc
Confidence 4455666 9999999998 2 5779999999998654 444 9999999999888877777 67653
No 44
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*
Probab=98.19 E-value=4.9e-07 Score=90.82 Aligned_cols=58 Identities=16% Similarity=0.077 Sum_probs=49.3
Q ss_pred ccCCCCCCCchhhhhHHhhhhhcCCCcEEEEEEcCCccCccchHHHHHHHHHHcCCCEEEEEecCC
Q 021087 234 TISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNNF 299 (317)
Q Consensus 234 ~~sg~lGtqlp~AvG~A~A~kl~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~lPvVFV~eNNg 299 (317)
+..+++|.++|.|+|+|+| .++.|||++|||+.... .+ +|+.|+.+++|+++||.||+
T Consensus 423 g~~g~~G~~l~~AiGaala-----~~~~vv~i~GDGsf~~~--~~-el~ta~~~~l~~~ivv~NN~ 480 (568)
T 2c31_A 423 GTWGVMGIGMGYCVAAAAV-----TGKPVIAVEGDSAFGFS--GM-ELETICRYNLPVTVIIMNNG 480 (568)
T ss_dssp TTTTCSSCHHHHHHHHHHH-----HCSCEEEEEEHHHHHTT--GG-GHHHHHHTTCCEEEEEEESS
T ss_pred CCCccccccHHHHHHHHhC-----CCCcEEEEEcchHhhcc--HH-HHHHHHHhCCCeEEEEEeCc
Confidence 3457899999999999998 35679999999999874 35 69999999999888888887
No 45
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}
Probab=97.91 E-value=3.3e-06 Score=85.21 Aligned_cols=56 Identities=13% Similarity=-0.019 Sum_probs=39.8
Q ss_pred CCCchhhhhHHhhhhhcCCCcEEEEEEcCCccCccchHHHHHHHHHHcCCCEEEEEecC-Cccccc
Q 021087 240 ATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNN-FEAMVL 304 (317)
Q Consensus 240 Gtqlp~AvG~A~A~kl~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~lPvVFV~eNN-gyAISt 304 (317)
|..+|.|+|+|++ ++.|||++|||+.... + + +|+.|+.+++|+++||-|| +|+|..
T Consensus 439 ~g~l~~AiGaa~~------~~~vv~i~GDGsf~~~-~-~-eL~ta~~~~l~~~ivv~NN~~~g~~~ 495 (578)
T 3lq1_A 439 DGVVSSALGASVV------FQPMFLLIGDLSFYHD-M-N-GLLMAKKYKMNLTIVIVNNDGGGIFS 495 (578)
T ss_dssp SSHHHHHHHHTTT------SSSEEEEEEHHHHHHT-G-G-GGHHHHHTTCCEEEEEECCC------
T ss_pred ccHHHHHHHHhcC------CCCEEEEEchHHHHhh-H-H-HHHhhccCCCCeEEEEEECCcCcccc
Confidence 3368889998743 5679999999999754 3 4 5999999999977777776 588754
No 46
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*
Probab=91.37 E-value=0.057 Score=59.73 Aligned_cols=41 Identities=10% Similarity=0.033 Sum_probs=32.9
Q ss_pred CcEEEEEEcCC-ccCccchHHHHHHHHHHcCCCEEEEEecCC-ccc
Q 021087 259 DACAVAYTGDG-GTSEQLWKPLSSSSVATMAGPLVPIYQNNF-EAM 302 (317)
Q Consensus 259 ~~vvv~~~GDG-atseGdfhE~ALN~Aa~~~lPvVFV~eNNg-yAI 302 (317)
++.|||+.||| +..-|- . .|-.|+.+++||++||-||+ |+.
T Consensus 953 ~~~Vv~i~GDG~~~~mg~-~--eL~ta~~~~~~v~iiVlnN~~yg~ 995 (1231)
T 2c42_A 953 KKSVWIFGGDGWAYDIGY-G--GLDHVLASGEDVNVFVMDTEVYSN 995 (1231)
T ss_dssp CCEEEEEEEHHHHHTTTH-H--HHHHHHHTTCSCEEEEEECSSBTT
T ss_pred CCcEEEEeCcHHHHHcch-H--HHHHHHHhCCCeEEEEEECHHHHh
Confidence 37899999999 777773 3 59999999999888777777 543
No 47
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A*
Probab=59.05 E-value=18 Score=36.83 Aligned_cols=53 Identities=8% Similarity=-0.188 Sum_probs=40.8
Q ss_pred hhhHHhhhhhcCCCcEEEEEEcCCccCccchHHHHHHHHHHcCCCEEEEEecCCccc
Q 021087 246 AVGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNNFEAM 302 (317)
Q Consensus 246 AvG~A~A~kl~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~lPvVFV~eNNgyAI 302 (317)
++|+|.++-+.|...++++.|+++.. -.++ .+..++..++||++++..-+.+.
T Consensus 367 ~v~~a~G~A~~G~~~~~~~~f~~Fl~---~a~d-qi~~~a~~~~~v~~v~~~~g~~~ 419 (616)
T 3mos_A 367 MVSIAVGCATRNRTVPFCSTFAAFFT---RAFD-QIRMAAISESNINLCGSHCGVSI 419 (616)
T ss_dssp HHHHHHHHHGGGCCEEEEEEEGGGGG---GGHH-HHHHHHHTTCCEEEEEESBSGGG
T ss_pred HHHHHHHHHHcCCCCEEEEehHHHHH---HHHH-HHHHHHHhCCCeEEEEECCCccc
Confidence 56666666666765677888999963 6688 78888999999999988777643
No 48
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli}
Probab=56.89 E-value=12 Score=37.91 Aligned_cols=59 Identities=15% Similarity=-0.182 Sum_probs=40.0
Q ss_pred hhhHHhhhhhcCCCcEEEEEEcCCccCccchHHHHHHHHHHcCCCEEEEEecCCccc-cccccc
Q 021087 246 AVGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNNFEAM-VLLLRV 308 (317)
Q Consensus 246 AvG~A~A~kl~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~lPvVFV~eNNgyAI-StP~~~ 308 (317)
++|+|.++-+.| -++++..+++... -.++|.+|.++..++||||++.+-++.- ..|++.
T Consensus 373 ~~~~a~G~A~~G-~rp~~~~~~~F~~---~a~dqi~~~~a~~~~pvv~~~~~~g~~g~~G~tH~ 432 (621)
T 2o1s_A 373 AVTFAAGLAIGG-YKPIVAIYSTFLQ---RAYDQVLHDVAIQKLPVLFAIDRAGIVGADGQTHQ 432 (621)
T ss_dssp HHHHHHHHHHTT-CEEEEEEETTGGG---GGHHHHHHTTTTTTCCCEEEEESCBCCCTTCGGGC
T ss_pred HHHHHHHHHHCC-CEEEEEehHhHHH---HHHHHHHHHHHhcCCCEEEEEECCccCCCCCCccC
Confidence 444555555555 4556666898752 5567678999999999999998877632 345544
No 49
>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus}
Probab=45.64 E-value=27 Score=35.73 Aligned_cols=58 Identities=12% Similarity=-0.026 Sum_probs=37.8
Q ss_pred hhhHHhhhhhcCCCcEEEEEEcCCccCccchHHHHHHHHHHcCCCEEEEEecCCccc--ccccc
Q 021087 246 AVGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNNFEAM--VLLLR 307 (317)
Q Consensus 246 AvG~A~A~kl~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~lPvVFV~eNNgyAI--StP~~ 307 (317)
++|+|.++-+.|.-+.++..+.-.+. -.++ ++..++..++||||++-+.+++. ..|++
T Consensus 409 ~~~~a~GlA~~Gg~~P~~~t~~~F~~---~~~~-air~~a~~~lpvv~~~t~~g~g~G~dG~tH 468 (651)
T 2e6k_A 409 MGAILNGLNLHGGYRAYGGTFLVFSD---YMRP-AIRLAALMGVPTVFVFTHDSIALGEDGPTH 468 (651)
T ss_dssp HHHHHHHHHHHSSCEEEEEEEGGGGG---GSHH-HHHHHHHHTCCCEEEEECCSGGGCTTCTTT
T ss_pred HHHHHHHHHHcCCCEEEEEeHHHHHH---HHHH-HHHHHHhcCCCEEEEEECCccccCCCcCcc
Confidence 44455555555533445554433321 4578 89999999999999998888665 45665
No 50
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=44.23 E-value=26 Score=36.03 Aligned_cols=58 Identities=3% Similarity=-0.203 Sum_probs=39.1
Q ss_pred hhhHHhhhhhcC-CCcEEEEEEcCCccCccchHHHHHHHHHHcCCCEEEEEecCCcc--cccccc
Q 021087 246 AVGVAYSLKMEK-KDACAVAYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNNFEA--MVLLLR 307 (317)
Q Consensus 246 AvG~A~A~kl~g-~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~lPvVFV~eNNgyA--IStP~~ 307 (317)
++|+|.++-+.| .-+.++..+...++ -.++ ++..++..++||||++-..+++ ...|++
T Consensus 426 ~v~~a~GlA~~G~~~~P~~~t~~~F~~---~~~~-~ir~~a~~~lpvv~~~t~~g~g~G~dG~tH 486 (675)
T 1itz_A 426 MGAICNGIALHSPGFVPYCATFFVFTD---YMRG-AMRISALSEAGVIYVMTHDSIGLGEDGPTH 486 (675)
T ss_dssp HHHHHHHHHTTCTTCEEEEEEEGGGHH---HHHH-HHHHHHHHTCCCEEEEECCSGGGCTTCTTT
T ss_pred HHHHHHHHHhcCCCCEEEEEEHHHHHH---HHHH-HHHHHHhcCCCEEEEEECCccccCCCCCCc
Confidence 455555656666 23455555655543 4578 8999999999999999776655 355665
No 51
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*
Probab=43.50 E-value=32 Score=35.26 Aligned_cols=58 Identities=9% Similarity=-0.116 Sum_probs=38.3
Q ss_pred hhhHHhhhhhcCCCcEEEEEEcCCccCccchHHHHHHHHHHcCCCEEEEEecCCccc--ccccc
Q 021087 246 AVGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNNFEAM--VLLLR 307 (317)
Q Consensus 246 AvG~A~A~kl~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~lPvVFV~eNNgyAI--StP~~ 307 (317)
++|+|.++-+.|.-+.+++.|...+. -.++ ++..++..++||||++-..+++. ..|++
T Consensus 414 ~v~~a~GlA~~gG~~P~~~tf~~F~~---~~~~-~ir~~a~~~lpvv~~~t~~g~~~G~dG~tH 473 (669)
T 2r8o_A 414 MTAIANGISLHGGFLPYTSTFLMFVE---YARN-AVRMAALMKQRQVMVYTHDSIGLGEDGPTH 473 (669)
T ss_dssp HHHHHHHHHHHSSCEEEEEEEGGGGG---TTHH-HHHHHHHTTCCCEEEEECCSGGGCTTCTTT
T ss_pred HHHHHHHHHHcCCCeEEEeehHHHHH---HHHH-HHHHHHhcCCCEEEEEeCCCcCcCCCCCcc
Confidence 44555555555433444555655542 3478 88889999999999998877664 45665
No 52
>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Probab=41.48 E-value=37 Score=28.21 Aligned_cols=55 Identities=15% Similarity=0.039 Sum_probs=35.4
Q ss_pred CCCchhhhhHHhhhhhcC-CCcEEEEEEcCCccCccchHHHHHHHHHHcCCCEEEEE
Q 021087 240 ATQLPQAVGVAYSLKMEK-KDACAVAYTGDGGTSEQLWKPLSSSSVATMAGPLVPIY 295 (317)
Q Consensus 240 Gtqlp~AvG~A~A~kl~g-~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~lPvVFV~ 295 (317)
+|.+..|+-.|+..-... ....+|.++.||..+.++..+ ++..+...+++|..|-
T Consensus 91 ~T~l~~al~~a~~~l~~~~~~~~~ivllTDG~~~~~~~~~-~~~~~~~~~i~v~~ig 146 (218)
T 3ibs_A 91 GTAIGEAINLATRSFTPQEGVGRAIIVITDGENHEGGAVE-AAKAAAEKGIQVSVLG 146 (218)
T ss_dssp SCCHHHHHHHHHTTSCSCSSCCEEEEEEECCTTCCSCHHH-HHHHHHTTTEEEEEEE
T ss_pred CCcHHHHHHHHHHHHhhCCCCCcEEEEEcCCCCCCCcHHH-HHHHHHhcCCEEEEEE
Confidence 344444444444222122 345688899999999998888 8888887777765543
No 53
>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*
Probab=40.11 E-value=27 Score=29.37 Aligned_cols=39 Identities=13% Similarity=0.211 Sum_probs=30.6
Q ss_pred hcCCCcEEEEEEcCCccCccchHHHHHHHHHHcCCCEEEEEecC
Q 021087 255 MEKKDACAVAYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNN 298 (317)
Q Consensus 255 l~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~lPvVFV~eNN 298 (317)
++.-| ++|+.++ ..+.|..+| +-+|...+.|||.+.++.
T Consensus 75 i~~aD-~vva~~~--~~d~Gt~~E--iGyA~algKPVi~l~~~~ 113 (165)
T 2khz_A 75 LQQAD-VVVAEVT--QPSLGVGYE--LGRAVALGKPILCLFRPQ 113 (165)
T ss_dssp HHHCS-EEEEECS--SCCHHHHHH--HHHHHHTCSSEEEEECTT
T ss_pred HHhCC-EEEEECC--CCCCCHHHH--HHHHHHCCCEEEEEEcCC
Confidence 33444 4555665 789999999 889999999999998776
No 54
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A*
Probab=39.37 E-value=30 Score=35.68 Aligned_cols=58 Identities=3% Similarity=-0.219 Sum_probs=37.3
Q ss_pred hhhHHhhhhhcCCCc-EEEEEEcCCccCccchHHHHHHHHHHcCCCEEEEEecCCccc--ccccc
Q 021087 246 AVGVAYSLKMEKKDA-CAVAYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNNFEAM--VLLLR 307 (317)
Q Consensus 246 AvG~A~A~kl~g~~~-vvv~~~GDGatseGdfhE~ALN~Aa~~~lPvVFV~eNNgyAI--StP~~ 307 (317)
++|+|.++-+.|.-+ .++..|..-++ -.++ ++..++..++||||++...+++. ..|++
T Consensus 421 ~vg~a~GlA~~Gg~~~P~~~~f~~F~~---~~~~-air~~a~~~lpvv~v~t~~g~g~G~dG~tH 481 (680)
T 1gpu_A 421 MGAIMNGISAFGANYKPYGGTFLNFVS---YAAG-AVRLSALSGHPVIWVATHDSIGVGEDGPTH 481 (680)
T ss_dssp HHHHHHHHHHHCTTCEEEEEEEHHHHG---GGHH-HHHHHHHHTCCCEEEEECCSGGGCTTCTTT
T ss_pred HHHHHHHHHhcCCCceEEEeehHHHHH---HHHH-HHHHHHhcCCCEEEEEeCCccccCCCCCcc
Confidence 455555555566323 34444433332 3578 89999999999999997777654 46766
No 55
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans}
Probab=39.13 E-value=17 Score=36.91 Aligned_cols=60 Identities=12% Similarity=-0.245 Sum_probs=39.0
Q ss_pred hhhHHhhhhhcCCCcEEEEEEcCCccCccchHHHHHHHHHHcCCCEEEEEecCCccc-ccccccc
Q 021087 246 AVGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNNFEAM-VLLLRVV 309 (317)
Q Consensus 246 AvG~A~A~kl~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~lPvVFV~eNNgyAI-StP~~~~ 309 (317)
++|+|.++-+.|. +.++..+.+... -.++|.+|.++..++||||++.+-+..- ..|++..
T Consensus 376 ~~~~a~G~A~~G~-rp~~~~~~~F~~---~a~dqi~~~~a~~~~pvv~~~~~~g~~g~dG~tH~~ 436 (629)
T 2o1x_A 376 AVTTAAGMALQGM-RPVVAIYSTFLQ---RAYDQVLHDVAIEHLNVTFCIDRAGIVGADGATHNG 436 (629)
T ss_dssp HHHHHHHHHHTTC-EEEEEEEHHHHG---GGHHHHHHTTTTTTCCCEEEEESBBCCCTTCTTTCB
T ss_pred HHHHHHHHHHcCC-EEEEEecHHHHH---HHHHHHHHHHhhcCCCEEEEEECCccCCCCCcccCc
Confidence 4444444444553 455666888752 5567678999999999999998877521 3454433
No 56
>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis}
Probab=38.03 E-value=27 Score=29.80 Aligned_cols=43 Identities=19% Similarity=0.217 Sum_probs=32.1
Q ss_pred hcCCCcEEEEEEcCC-ccCccchHHHHHHHHHHcCCCEEEEEecCCcc
Q 021087 255 MEKKDACAVAYTGDG-GTSEQLWKPLSSSSVATMAGPLVPIYQNNFEA 301 (317)
Q Consensus 255 l~g~~~vvv~~~GDG-atseGdfhE~ALN~Aa~~~lPvVFV~eNNgyA 301 (317)
++..| ++|+.+ || ..+.|..+| +-+|...+.||+.+..+-.-.
T Consensus 67 i~~aD-~viA~l-dg~~~D~Gt~~E--iG~A~a~gkPVi~~~~D~R~~ 110 (162)
T 3ehd_A 67 VLASD-LLVALL-DGPTIDAGVASE--IGVAYAKGIPVVALYTDSRQQ 110 (162)
T ss_dssp HHTCS-EEEEEC-CSSSCCHHHHHH--HHHHHHTTCCEEEECCCGGGC
T ss_pred HHHCC-EEEEEC-CCCCCCCCHHHH--HHHHHHCCCEEEEEEcCcccc
Confidence 34444 455555 55 578999999 899999999999988876643
No 57
>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A
Probab=33.75 E-value=51 Score=25.38 Aligned_cols=36 Identities=11% Similarity=0.050 Sum_probs=26.3
Q ss_pred CCCCCceEEeCCCCCccc-CCCCCCCCHHHHHHHHHH
Q 021087 103 EKRVPCFRVLDDNGELIK-GSDFQQVSKEVAVKMYSH 138 (317)
Q Consensus 103 ~~~~p~~rvld~~G~~~~-~~~~~~ls~e~l~~lYr~ 138 (317)
...+|++-++|.+|+++. ....-.++.+++.++.+.
T Consensus 89 v~~~Pt~~~~d~~G~~v~~~~~~G~~~~~~l~~~l~~ 125 (134)
T 2fwh_A 89 VLGLPTILFFDGQGQEHPQARVTGFMDAETFSAHLRD 125 (134)
T ss_dssp CCSSSEEEEECTTSCBCGGGCBCSCCCHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCEeeeeeeeeccCHHHHHHHHHh
Confidence 457999999999999973 122334688888777654
No 58
>1ik6_A Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, oxidoreductase; 2.00A {Pyrobaculum aerophilum} SCOP: c.36.1.7 c.48.1.2
Probab=32.92 E-value=44 Score=31.75 Aligned_cols=50 Identities=18% Similarity=0.002 Sum_probs=29.1
Q ss_pred hhhHHhhhhhcCCCcEEEEE-EcCCccCccchHHHHHHHHHHc--------CCCEEEEEecCC
Q 021087 246 AVGVAYSLKMEKKDACAVAY-TGDGGTSEQLWKPLSSSSVATM--------AGPLVPIYQNNF 299 (317)
Q Consensus 246 AvG~A~A~kl~g~~~vvv~~-~GDGatseGdfhE~ALN~Aa~~--------~lPvVFV~eNNg 299 (317)
++|+|.++-+.| -++++.. |++.. .-.++|=.|-++.+ ++||||++.+-+
T Consensus 110 ~v~~a~G~A~~G-~rpv~~~tf~~Fl---~~a~Dqi~~~~a~~~~~~~g~~~~pvv~~~~~gg 168 (369)
T 1ik6_A 110 ILGFAMGMAMAG-LKPVAEIQFVDFI---WLGADELLNHIAKLRYRSGGNYKAPLVVRTPVGS 168 (369)
T ss_dssp HHHHHHHHHHTT-CEEEEECCCC-------CCHHHHHHHHHHHHC------CCCCEEEEEECC
T ss_pred HHHHHHHHHHCC-CeeEEEecchhHH---HHHHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCC
Confidence 444555544455 3445544 89986 25567445657755 999999998666
No 59
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe}
Probab=32.61 E-value=35 Score=29.25 Aligned_cols=35 Identities=6% Similarity=-0.172 Sum_probs=26.0
Q ss_pred CcEEEEEEcCCccCccchHHHHHHHHHHcCCCEEEE
Q 021087 259 DACAVAYTGDGGTSEQLWKPLSSSSVATMAGPLVPI 294 (317)
Q Consensus 259 ~~vvv~~~GDGatseGdfhE~ALN~Aa~~~lPvVFV 294 (317)
.++++.++||+..++++..+ +...+...+..|.+|
T Consensus 107 ~riiil~~~~~~~~~~~~~~-~a~~lk~~gi~v~~I 141 (192)
T 2x5n_A 107 QRIVAFVGSPIVEDEKNLIR-LAKRMKKNNVAIDII 141 (192)
T ss_dssp EEEEEEECSCCSSCHHHHHH-HHHHHHHTTEEEEEE
T ss_pred ceEEEEEECCCCCCchhHHH-HHHHHHHCCCEEEEE
Confidence 34566677777666788888 888888888886554
No 60
>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=31.56 E-value=66 Score=33.07 Aligned_cols=58 Identities=3% Similarity=-0.257 Sum_probs=36.1
Q ss_pred hhhHHhhhhhcCCCcEEEEEEcCCccCccchHHHHHHHHHHcCCCEEEEEecCCccc--ccccc
Q 021087 246 AVGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNNFEAM--VLLLR 307 (317)
Q Consensus 246 AvG~A~A~kl~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~lPvVFV~eNNgyAI--StP~~ 307 (317)
++|+|.++-+.|.-+.++..+..-+. -.++ ++..++..++||||++...+++. ..|++
T Consensus 414 ~~~~a~GlA~~GG~~P~~~~~~~F~~---~~~~-~ir~~a~~~~pvv~~~t~~g~g~G~dG~tH 473 (673)
T 1r9j_A 414 MCAILNGLDAHDGIIPFGGTFLNFIG---YALG-AVRLAAISHHRVIYVATHDSIGVGEDGPTH 473 (673)
T ss_dssp HHHHHHHHHHHSSCEEEEEEEGGGGG---GGHH-HHHHHHHHTCCCEEEEECCSGGGCTTCTTT
T ss_pred HHHHHHHHHhcCCCEEEEEehHHHHH---HHHH-HHHHHHhcCCCEEEEEECCccCcCCCCccc
Confidence 44455555555422344444444332 4467 78889999999999997766543 45665
No 61
>3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343}
Probab=28.81 E-value=86 Score=24.99 Aligned_cols=35 Identities=11% Similarity=0.189 Sum_probs=26.1
Q ss_pred CCCCceEEeCCCCCcccCCCCCCCC-HHHHHHHHHHH
Q 021087 104 KRVPCFRVLDDNGELIKGSDFQQVS-KEVAVKMYSHM 139 (317)
Q Consensus 104 ~~~p~~rvld~~G~~~~~~~~~~ls-~e~l~~lYr~M 139 (317)
..+|++-++|.+|+++.... -..+ .+++.+..+..
T Consensus 129 ~~~Pt~~lid~~G~~~~~~~-G~~~~~~~l~~~l~~~ 164 (172)
T 3f9u_A 129 NAQPFYVLIDNEGNPLNKSY-AYDEDISKYINFLQTG 164 (172)
T ss_dssp CCSSEEEEECTTSCBSSCCB-CSCCCHHHHHHHHHHH
T ss_pred CCcceEEEECCCCCEEeecc-CCCCCHHHHHHHHHHH
Confidence 57999999999999986432 3345 88887776654
No 62
>2ozl_B PDHE1-B, pyruvate dehydrogenase E1 component subunit beta; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1ni4_B* 3exe_B* 3exf_B* 3exg_B 3exh_B* 3exi_B
Probab=28.57 E-value=34 Score=32.10 Aligned_cols=57 Identities=18% Similarity=-0.079 Sum_probs=34.0
Q ss_pred hhhHHhhhhhcCCCcEEEE-EEcCCccCccchHHHHHHHHH--------HcCCCEEEEEecCCccc-ccccc
Q 021087 246 AVGVAYSLKMEKKDACAVA-YTGDGGTSEQLWKPLSSSSVA--------TMAGPLVPIYQNNFEAM-VLLLR 307 (317)
Q Consensus 246 AvG~A~A~kl~g~~~vvv~-~~GDGatseGdfhE~ALN~Aa--------~~~lPvVFV~eNNgyAI-StP~~ 307 (317)
++|+|.++-+.| -++++. .|++.. .-.++|=.|-++ ..++||||++.+ |+.. ..|++
T Consensus 74 ~v~~a~G~A~~G-~rp~~~~~f~~F~---~~a~dqi~~~~a~~~y~~~g~~~~pvv~~~~~-G~~g~~G~tH 140 (341)
T 2ozl_B 74 FAGIAVGAAMAG-LRPICEFMTFNFS---MQAIDQVINSAAKTYYMSGGLQPVPIVFRGPN-GASAGVAAQH 140 (341)
T ss_dssp HHHHHHHHHHTT-CEEEEECSSGGGG---GGGHHHHHTTTTTHHHHTTSSCCCCCEEEEEC-SCCSSCCGGG
T ss_pred HHHHHHHHHHCC-CEEEEEeccHHHH---HHHHHHHHHHHHHHHhhccccCCCCEEEEEcC-cCCCCCCcch
Confidence 455555555555 344554 488887 455773334455 279999999996 6422 44554
No 63
>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A
Probab=26.96 E-value=43 Score=24.79 Aligned_cols=34 Identities=12% Similarity=0.266 Sum_probs=25.0
Q ss_pred CCCCceEEeCCCCCcccCCCCCCCCHHHHHHHHHHH
Q 021087 104 KRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHM 139 (317)
Q Consensus 104 ~~~p~~rvld~~G~~~~~~~~~~ls~e~l~~lYr~M 139 (317)
..+|.+-++|.+|+++ ......+.+++.+..+.+
T Consensus 100 ~~~P~~~~id~~g~i~--~~~g~~~~~~l~~~l~~~ 133 (136)
T 1zzo_A 100 TQQPAYAFVDPHGNVD--VVRGRMSQDELTRRVTAL 133 (136)
T ss_dssp CSSSEEEEECTTCCEE--EEESCCCHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCEE--EEecCCCHHHHHHHHHHH
Confidence 5689999999999986 223346778877766654
No 64
>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10
Probab=24.79 E-value=52 Score=24.45 Aligned_cols=35 Identities=11% Similarity=0.045 Sum_probs=25.5
Q ss_pred CCCCCceEEeCCCCCcccCCCC---CCCCHHHHHHHHHHH
Q 021087 103 EKRVPCFRVLDDNGELIKGSDF---QQVSKEVAVKMYSHM 139 (317)
Q Consensus 103 ~~~~p~~rvld~~G~~~~~~~~---~~ls~e~l~~lYr~M 139 (317)
...+|.+-++|.+|+++ . .. ...+.+++.+..+..
T Consensus 97 i~~~P~~~lid~~G~i~-~-~~~~~g~~~~~~l~~~l~~l 134 (136)
T 1lu4_A 97 VPWQPAFVFYRADGTST-F-VNNPTAAMSQDELSGRVAAL 134 (136)
T ss_dssp CCSSSEEEEECTTSCEE-E-ECCSSSCCCHHHHHHHHHHC
T ss_pred CCCCCEEEEECCCCcEE-E-EEcCCCccCHHHHHHHHHHH
Confidence 35689999999999986 2 22 346788887776653
No 65
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*
Probab=24.37 E-value=75 Score=26.87 Aligned_cols=34 Identities=12% Similarity=0.145 Sum_probs=27.8
Q ss_pred EEEEEEcCCccCccchHHHHHHHHHHcCCCEEEEEecC
Q 021087 261 CAVAYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNN 298 (317)
Q Consensus 261 vvv~~~GDGatseGdfhE~ALN~Aa~~~lPvVFV~eNN 298 (317)
++|+ ..| ..+.|..+| +-+|...+.||+.++++.
T Consensus 71 ~vvA-~l~-~~d~Gt~~E--iG~A~algkPV~~l~~~~ 104 (152)
T 4fyk_A 71 VVVA-EVT-QPSLGVGYE--LGRAVALGKPILCLFRPQ 104 (152)
T ss_dssp EEEE-ECS-SCCHHHHHH--HHHHHHTTCCEEEEECGG
T ss_pred EEEE-eCC-CCCCCHHHH--HHHHHHcCCeEEEEEeCC
Confidence 4455 456 678999999 999999999999988855
No 66
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp}
Probab=23.53 E-value=94 Score=31.99 Aligned_cols=58 Identities=9% Similarity=-0.141 Sum_probs=36.8
Q ss_pred hhhHHhhhhhcCCCcEEEEEEcCCccCccchHHHHHHHHHHcCCCEEEEEecCCcc--cccccc
Q 021087 246 AVGVAYSLKMEKKDACAVAYTGDGGTSEQLWKPLSSSSVATMAGPLVPIYQNNFEA--MVLLLR 307 (317)
Q Consensus 246 AvG~A~A~kl~g~~~vvv~~~GDGatseGdfhE~ALN~Aa~~~lPvVFV~eNNgyA--IStP~~ 307 (317)
++|+|-++-+.|.-+.++..|.+-.. -..+ ++..++..++||||+....+++ ...|++
T Consensus 415 ~v~~a~GlA~~gG~~P~~~tf~~F~~---~~~~-~ir~~a~~~lpvv~~~t~~g~g~G~dG~TH 474 (663)
T 3kom_A 415 MAAIMNGLSLYGGIKPYGGTFLVFSD---YSRN-AIRMSALMKQPVVHVMSHDSIGLGEDGPTH 474 (663)
T ss_dssp HHHHHHHHHHHSSCEEEEEEEGGGHH---HHHH-HHHHHHHTTCCCEEEEECCSGGGCTTCTTT
T ss_pred HHHHHHHHHHcCCCEEEEEehHHHHH---HHHH-HHHHHHhcCCCEEEEEeCCccccCCCCCCc
Confidence 34444444445334455665766642 2356 7888899999999998776654 346665
No 67
>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0
Probab=23.11 E-value=76 Score=24.54 Aligned_cols=36 Identities=17% Similarity=0.075 Sum_probs=26.8
Q ss_pred CCCCCceEEeCCCCCcccCCCCCCCCHHHHHHHHHHH
Q 021087 103 EKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHM 139 (317)
Q Consensus 103 ~~~~p~~rvld~~G~~~~~~~~~~ls~e~l~~lYr~M 139 (317)
...+|.+=|+|.+|+++.. .....+.+++.+..+..
T Consensus 114 i~~~P~~~lid~~G~i~~~-~~g~~~~~~l~~~l~~~ 149 (165)
T 3or5_A 114 ITGIPTSFVIDASGNVSGV-IVGPRSKADFDRIVKMA 149 (165)
T ss_dssp SCSSSEEEEECTTSBEEEE-ECSCCCHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCcEEEE-EcCCCCHHHHHHHHHHH
Confidence 4578999999999998753 22346788887777655
No 68
>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}
Probab=22.99 E-value=81 Score=24.08 Aligned_cols=35 Identities=20% Similarity=0.505 Sum_probs=25.9
Q ss_pred CCCCceEEeCCCCCcccCCCCCCCCHHHHHHHHHHH
Q 021087 104 KRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHM 139 (317)
Q Consensus 104 ~~~p~~rvld~~G~~~~~~~~~~ls~e~l~~lYr~M 139 (317)
..+|.+-|+|++|+++... ....+.+++.++.+.+
T Consensus 107 ~~~P~~~lid~~G~i~~~~-~g~~~~~~l~~~l~~~ 141 (152)
T 2lja_A 107 NGIPRFILLDRDGKIISAN-MTRPSDPKTAEKFNEL 141 (152)
T ss_dssp CSSCCEEEECTTSCEEESS-CCCTTCHHHHHHHHHH
T ss_pred CCCCEEEEECCCCeEEEcc-CCCCCHHHHHHHHHHH
Confidence 4789999999999998642 3346777777766654
No 69
>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}
Probab=22.76 E-value=52 Score=24.13 Aligned_cols=34 Identities=18% Similarity=0.340 Sum_probs=25.0
Q ss_pred CCCCceEEeCCCCCcccCCCCCCCCHHHHHHHHHH
Q 021087 104 KRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSH 138 (317)
Q Consensus 104 ~~~p~~rvld~~G~~~~~~~~~~ls~e~l~~lYr~ 138 (317)
..+|.+-|+|++|+++.. .....+.+++.+..+.
T Consensus 103 ~~~P~~~lid~~G~i~~~-~~g~~~~~~l~~~l~~ 136 (138)
T 4evm_A 103 RSYPTQAFIDKEGKLVKT-HPGFMEKDAILQTLKE 136 (138)
T ss_dssp CSSSEEEEECTTCCEEEE-EESCCCHHHHHHHHHH
T ss_pred ccCCeEEEECCCCcEEEe-ecCCCcHHHHHHHHHh
Confidence 568999999999998753 2234677887776654
No 70
>1qs0_B 2-oxoisovalerate dehydrogenase beta-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.7 c.48.1.2 PDB: 2bp7_B
Probab=22.14 E-value=31 Score=31.96 Aligned_cols=56 Identities=16% Similarity=-0.095 Sum_probs=32.6
Q ss_pred hhhHHhhhhhcCCCcEEEE-EEcCCccCccchHHHHHHHHHHc--------CCCEEEEEecCCccccccc
Q 021087 246 AVGVAYSLKMEKKDACAVA-YTGDGGTSEQLWKPLSSSSVATM--------AGPLVPIYQNNFEAMVLLL 306 (317)
Q Consensus 246 AvG~A~A~kl~g~~~vvv~-~~GDGatseGdfhE~ALN~Aa~~--------~lPvVFV~eNNgyAIStP~ 306 (317)
++|+|.++-+.| -+++++ .++++. .-.++|=+|.++.+ ++|||+++.+-+ ....|+
T Consensus 64 ~~~~a~G~A~~G-~rp~~~~t~~~F~---~~a~dqi~~~~a~~~~~~~~~~~~pvv~~~~~~g-~~~G~t 128 (338)
T 1qs0_B 64 IVGTAVGMGAYG-LRPVVEIQFADYF---YPASDQIVSEMARLRYRSAGEFIAPLTLRMPCGG-GIYGGQ 128 (338)
T ss_dssp HHHHHHHHHHHT-CEEEEECSCGGGC---GGGHHHHHTTTTTHHHHTTTSSCCCCEEEEEECC-SSSCCS
T ss_pred HHHHHHHHHhCC-CEEEEEeccHhHH---HHHHHHHHHHHHHHhhhcCCCCCCCEEEEEeCCC-CCCCcc
Confidence 444444444445 244443 489996 35577344556653 499999986544 444444
No 71
>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A
Probab=21.40 E-value=1.4e+02 Score=24.02 Aligned_cols=36 Identities=22% Similarity=0.179 Sum_probs=25.0
Q ss_pred CCCCceEEeCCCCCcccCCCCC---------CCCHHHHHHHHHHH
Q 021087 104 KRVPCFRVLDDNGELIKGSDFQ---------QVSKEVAVKMYSHM 139 (317)
Q Consensus 104 ~~~p~~rvld~~G~~~~~~~~~---------~ls~e~l~~lYr~M 139 (317)
..+|++-++|.+|+++....-. ..+.+++++..+.+
T Consensus 102 ~~~Pt~~~~d~~G~~~~~~~G~~~~~~~~~~~~~~~~l~~~l~~~ 146 (164)
T 1sen_A 102 GYIPRILFLDPSGKVHPEIINENGNPSYKYFYVSAEQVVQGMKEA 146 (164)
T ss_dssp SCSSEEEEECTTSCBCTTCCCTTSCTTSTTCCCSHHHHHHHHHHH
T ss_pred CcCCeEEEECCCCCEEEEEeCCCCccchhcccCCHHHHHHHHHHH
Confidence 4589999999999987532111 25777777766654
No 72
>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa}
Probab=21.09 E-value=1.1e+02 Score=23.13 Aligned_cols=36 Identities=11% Similarity=0.325 Sum_probs=26.2
Q ss_pred CCCCceEEeCCCCCcccCCCC------CCCCHHHHHHHHHHH
Q 021087 104 KRVPCFRVLDDNGELIKGSDF------QQVSKEVAVKMYSHM 139 (317)
Q Consensus 104 ~~~p~~rvld~~G~~~~~~~~------~~ls~e~l~~lYr~M 139 (317)
..+|++-++|.+|+++....- ..++.+++.++.+.+
T Consensus 90 ~~~Pt~~~~d~~G~~~~~~~g~~~~~~~~~~~~~l~~~l~~l 131 (133)
T 3fk8_A 90 DGIPAVVVVNSDGKVRYTTKGGELANARKMSDQGIYDFFAKI 131 (133)
T ss_dssp GCSSEEEEECTTSCEEEECCSCTTTTGGGSCHHHHHHHHHHH
T ss_pred CccceEEEECCCCCEEEEecCCcccccccCCHHHHHHHHHHh
Confidence 679999999999998743211 146788888777654
No 73
>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1
Probab=20.84 E-value=1.9e+02 Score=23.29 Aligned_cols=35 Identities=14% Similarity=-0.023 Sum_probs=25.5
Q ss_pred CcEEEEEEcCCccCccch--HHHHHHHHHHcCCCEEEE
Q 021087 259 DACAVAYTGDGGTSEQLW--KPLSSSSVATMAGPLVPI 294 (317)
Q Consensus 259 ~~vvv~~~GDGatseGdf--hE~ALN~Aa~~~lPvVFV 294 (317)
...+++++-||..+.+.. .+ ++..+...+++|..|
T Consensus 110 ~~~~iillTDG~~~~~~~~~~~-~~~~~~~~gi~i~~i 146 (198)
T 1n3y_A 110 AAKILIVITDGKKEGDSLDYKD-VIPMADAAGIIRYAI 146 (198)
T ss_dssp SEEEEEEEESSCCBSCSSCHHH-HHHHHHHTTCEEEEE
T ss_pred CceEEEEECCCCCCCCcccHHH-HHHHHHHCCCEEEEE
Confidence 456888899999885543 66 777777778776554
No 74
>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae}
Probab=20.81 E-value=84 Score=24.92 Aligned_cols=35 Identities=11% Similarity=0.080 Sum_probs=24.8
Q ss_pred CCCCCceEEeCCCCCcccCCCCCCC--CHHHHHHHHHHH
Q 021087 103 EKRVPCFRVLDDNGELIKGSDFQQV--SKEVAVKMYSHM 139 (317)
Q Consensus 103 ~~~~p~~rvld~~G~~~~~~~~~~l--s~e~l~~lYr~M 139 (317)
...+|++-++|.+|+++... -.. +.+++.+..+..
T Consensus 114 v~~~Pt~~~~d~~G~~~~~~--G~~~~~~~~l~~~l~~~ 150 (154)
T 2ju5_A 114 VTGFPELVFIDAEGKQLARM--GFEPGGGAAYVSKVKSA 150 (154)
T ss_dssp CCSSSEEEEECTTCCEEEEE--CCCTTCHHHHHHHHHHH
T ss_pred CCCCCEEEEEcCCCCEEEEe--cCCCCCHHHHHHHHHHH
Confidence 35699999999999987632 223 677776665543
Done!