Query 021089
Match_columns 317
No_of_seqs 169 out of 1013
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 07:30:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021089.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021089hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03153 hypothetical protein; 100.0 1.8E-52 3.9E-57 411.3 25.5 228 78-309 117-344 (537)
2 PF02434 Fringe: Fringe-like; 100.0 1.5E-35 3.2E-40 274.5 8.6 191 79-285 2-211 (252)
3 KOG2246 Galactosyltransferases 100.0 1.5E-34 3.3E-39 279.4 14.2 206 79-309 87-297 (364)
4 PF04646 DUF604: Protein of un 99.9 2.8E-23 6E-28 189.3 6.6 93 216-309 1-93 (255)
5 KOG3708 Uncharacterized conser 99.7 1.5E-17 3.3E-22 162.7 8.6 170 78-275 21-191 (681)
6 KOG2287 Galactosyltransferases 99.5 8.5E-14 1.8E-18 134.9 14.8 211 82-309 94-336 (349)
7 PLN03133 beta-1,3-galactosyltr 99.5 6.4E-13 1.4E-17 136.1 15.9 209 82-308 384-622 (636)
8 PLN03193 beta-1,3-galactosyltr 99.5 7.4E-13 1.6E-17 129.0 14.5 184 83-282 139-356 (408)
9 PF01762 Galactosyl_T: Galacto 99.3 1.4E-11 3E-16 109.6 12.8 114 155-277 64-195 (195)
10 KOG2288 Galactosyltransferases 99.0 1.1E-09 2.4E-14 100.2 8.4 115 160-284 98-228 (274)
11 PTZ00210 UDP-GlcNAc-dependent 99.0 4.5E-09 9.8E-14 101.5 12.0 105 159-268 187-304 (382)
12 PF13506 Glyco_transf_21: Glyc 95.8 0.045 9.8E-07 48.0 8.0 99 173-277 30-147 (175)
13 TIGR03469 HonB hopene-associat 95.1 2.2 4.9E-05 41.7 18.1 96 173-274 132-252 (384)
14 PRK11204 N-glycosyltransferase 95.0 0.93 2E-05 44.5 15.4 98 173-277 133-253 (420)
15 cd04186 GT_2_like_c Subfamily 94.7 0.072 1.6E-06 43.9 5.7 85 173-277 73-158 (166)
16 TIGR03472 HpnI hopanoid biosyn 94.2 2.1 4.6E-05 41.7 15.4 99 173-277 125-246 (373)
17 cd02520 Glucosylceramide_synth 93.9 0.14 2.9E-06 44.7 5.9 86 173-278 85-171 (196)
18 cd06434 GT2_HAS Hyaluronan syn 93.7 2.3 4.9E-05 37.5 13.5 103 173-275 76-204 (235)
19 cd02526 GT2_RfbF_like RfbF is 93.2 3.6 7.7E-05 36.3 14.0 100 173-277 74-197 (237)
20 PLN03181 glycosyltransferase; 93.1 0.35 7.6E-06 48.0 7.7 56 152-210 179-234 (453)
21 PRK14583 hmsR N-glycosyltransf 92.9 4.2 9.1E-05 40.6 15.4 98 173-277 154-274 (444)
22 PF01755 Glyco_transf_25: Glyc 92.8 0.38 8.2E-06 42.3 7.0 87 154-245 70-189 (200)
23 TIGR01556 rhamnosyltran L-rham 92.4 1.1 2.5E-05 41.3 9.9 97 173-274 72-191 (281)
24 KOG2246 Galactosyltransferases 91.7 0.19 4.2E-06 49.3 4.0 43 78-120 67-110 (364)
25 PF13641 Glyco_tranf_2_3: Glyc 91.2 0.39 8.4E-06 42.4 5.2 105 161-277 77-203 (228)
26 cd06532 Glyco_transf_25 Glycos 90.9 0.45 9.7E-06 39.3 5.0 51 154-245 67-117 (128)
27 cd04185 GT_2_like_b Subfamily 90.9 0.66 1.4E-05 40.2 6.2 85 173-273 78-163 (202)
28 COG1215 Glycosyltransferases, 90.5 9 0.0002 37.3 14.6 176 82-279 53-260 (439)
29 PF13632 Glyco_trans_2_3: Glyc 90.1 0.82 1.8E-05 39.4 6.1 95 177-277 1-117 (193)
30 PF05679 CHGN: Chondroitin N-a 89.4 0.37 7.9E-06 49.3 3.8 33 244-277 1-34 (499)
31 cd06421 CESA_CelA_like CESA_Ce 89.4 0.74 1.6E-05 40.5 5.4 95 173-275 83-202 (234)
32 cd04188 DPG_synthase DPG_synth 88.3 3.5 7.7E-05 36.0 9.0 101 174-280 82-204 (211)
33 cd06437 CESA_CaSu_A2 Cellulose 88.3 1.5 3.2E-05 39.0 6.7 98 173-277 86-206 (232)
34 cd04192 GT_2_like_e Subfamily 88.3 1.4 3.1E-05 38.3 6.5 94 173-271 81-195 (229)
35 cd06427 CESA_like_2 CESA_like_ 88.1 1.3 2.7E-05 39.9 6.1 99 173-278 83-206 (241)
36 PF13704 Glyco_tranf_2_4: Glyc 87.2 1 2.2E-05 34.8 4.3 85 101-196 5-97 (97)
37 cd04195 GT2_AmsE_like GT2_AmsE 86.9 1.3 2.9E-05 38.0 5.4 95 173-276 79-193 (201)
38 cd06438 EpsO_like EpsO protein 86.9 1 2.2E-05 38.6 4.6 68 173-240 80-169 (183)
39 PTZ00260 dolichyl-phosphate be 84.1 41 0.0009 32.3 16.5 99 174-278 162-286 (333)
40 cd06436 GlcNAc-1-P_transferase 83.8 2 4.2E-05 37.4 4.9 67 174-241 89-178 (191)
41 cd06420 GT2_Chondriotin_Pol_N 83.6 4.1 9E-05 34.2 6.7 93 173-274 78-170 (182)
42 cd02525 Succinoglycan_BP_ExoA 83.5 4.6 0.0001 35.6 7.3 99 173-277 80-201 (249)
43 cd06442 DPM1_like DPM1_like re 82.3 7.4 0.00016 33.9 8.1 97 174-277 78-196 (224)
44 cd06439 CESA_like_1 CESA_like_ 81.5 3.9 8.5E-05 36.5 6.1 36 174-209 109-145 (251)
45 cd04196 GT_2_like_d Subfamily 81.3 8.1 0.00018 33.1 7.9 92 173-270 78-190 (214)
46 PLN02726 dolichyl-phosphate be 81.1 9.1 0.0002 34.4 8.4 99 173-278 92-212 (243)
47 cd06435 CESA_NdvC_like NdvC_li 80.5 10 0.00022 33.5 8.4 97 173-277 83-202 (236)
48 cd04184 GT2_RfbC_Mx_like Myxoc 80.3 3.6 7.9E-05 35.2 5.3 99 173-277 82-194 (202)
49 COG1216 Predicted glycosyltran 78.4 29 0.00062 32.6 11.1 99 175-278 85-214 (305)
50 PRK11498 bcsA cellulose syntha 78.0 35 0.00077 37.4 12.8 93 173-274 338-459 (852)
51 cd02522 GT_2_like_a GT_2_like_ 76.8 9.3 0.0002 33.1 6.9 92 174-273 72-176 (221)
52 TIGR03030 CelA cellulose synth 76.6 48 0.001 35.5 13.3 94 173-274 227-348 (713)
53 cd06433 GT_2_WfgS_like WfgS an 75.6 12 0.00026 31.4 7.0 97 173-275 74-185 (202)
54 cd06913 beta3GnTL1_like Beta 1 75.1 6.3 0.00014 34.5 5.4 38 173-210 83-120 (219)
55 TIGR03111 glyc2_xrt_Gpos1 puta 73.9 36 0.00078 34.0 11.0 94 173-273 130-256 (439)
56 cd00761 Glyco_tranf_GTA_type G 73.1 10 0.00022 29.6 5.7 74 174-269 77-150 (156)
57 PF02485 Branch: Core-2/I-Bran 71.0 26 0.00056 31.7 8.5 152 85-244 1-173 (244)
58 PF05637 Glyco_transf_34: gala 69.4 3.9 8.5E-05 37.7 2.7 33 153-188 58-90 (239)
59 cd04187 DPM1_like_bac Bacteria 67.2 16 0.00034 30.8 5.9 70 174-243 80-164 (181)
60 PRK10714 undecaprenyl phosphat 63.4 16 0.00035 35.0 5.8 71 173-243 89-174 (325)
61 PRK14716 bacteriophage N4 adso 63.1 18 0.00039 37.2 6.3 101 173-276 157-281 (504)
62 PF00535 Glycos_transf_2: Glyc 59.2 4.8 0.0001 32.5 1.1 37 174-210 78-115 (169)
63 cd04191 Glucan_BSP_ModH Glucan 58.7 20 0.00044 33.1 5.4 104 173-278 94-225 (254)
64 cd02510 pp-GalNAc-T pp-GalNAc- 57.4 23 0.00051 32.9 5.6 100 173-277 82-218 (299)
65 cd04179 DPM_DPG-synthase_like 54.4 17 0.00037 30.4 3.9 37 175-211 80-117 (185)
66 cd02514 GT13_GLCNAC-TI GT13_GL 50.8 1.5E+02 0.0033 28.8 10.1 77 161-241 88-174 (334)
67 PLN03182 xyloglucan 6-xylosylt 47.7 17 0.00036 36.4 3.0 56 151-209 177-232 (429)
68 COG3306 Glycosyltransferase in 47.1 1.2E+02 0.0027 28.2 8.6 87 154-247 71-176 (255)
69 cd06423 CESA_like CESA_like is 46.0 27 0.00059 27.9 3.7 27 173-199 77-103 (180)
70 PRK05454 glucosyltransferase M 41.2 1.6E+02 0.0035 31.6 9.3 103 173-278 219-350 (691)
71 PRK11234 nfrB bacteriophage N4 39.8 1.7E+02 0.0036 31.7 9.2 102 174-277 155-279 (727)
72 KOG4748 Subunit of Golgi manno 38.5 37 0.00081 33.4 3.8 55 151-210 155-221 (364)
73 PF05060 MGAT2: N-acetylglucos 35.5 2.7E+02 0.0059 27.4 9.2 104 157-266 152-269 (356)
74 PLN03183 acetylglucosaminyltra 35.1 4.9E+02 0.011 26.3 20.6 158 79-245 74-274 (421)
75 PF10111 Glyco_tranf_2_2: Glyc 33.7 1.3E+02 0.0027 27.9 6.5 97 173-274 87-212 (281)
76 PF12433 PV_NSP1: Parvovirus n 31.0 37 0.0008 25.8 1.9 25 218-243 37-67 (80)
77 cd04190 Chitin_synth_C C-termi 30.3 44 0.00096 30.1 2.8 103 173-275 72-211 (244)
78 PF05212 DUF707: Protein of un 29.4 4.3E+02 0.0093 25.4 9.1 178 78-275 36-244 (294)
79 KOG3832 Predicted amino acid t 27.7 53 0.0011 30.3 2.7 52 6-60 103-160 (319)
80 PHA02688 ORF059 IMV protein VP 27.7 1.6E+02 0.0034 28.6 5.9 74 171-246 113-202 (323)
81 cd02515 Glyco_transf_6 Glycosy 27.2 5.5E+02 0.012 24.4 11.1 120 80-211 34-161 (271)
82 PLN02893 Cellulose synthase-li 25.4 2.9E+02 0.0062 30.0 8.0 30 173-202 297-328 (734)
83 PF14071 YlbD_coat: Putative c 25.4 12 0.00026 31.3 -1.7 17 175-191 29-45 (124)
84 PF09258 Glyco_transf_64: Glyc 23.3 1.3E+02 0.0028 27.8 4.5 100 173-273 74-187 (247)
No 1
>PLN03153 hypothetical protein; Provisional
Probab=100.00 E-value=1.8e-52 Score=411.29 Aligned_cols=228 Identities=46% Similarity=0.773 Sum_probs=213.0
Q ss_pred CCCCCCcEEEEEecCCCchHHHHHHHHHHhCCCCCeEEEEecCCCCCCCCCCCCCCceeecCCCCCCccCCCCCchhhHH
Q 021089 78 NPLTRRHLLFSIASSSSSWPRRRSYVRLWYSPNSTRALTFLDRAADSSSAGDPSLPRIVISADTSKFPFTFPKGLRSAVR 157 (317)
Q Consensus 78 ~~~~~~~I~f~I~Ts~~~~~~R~~~i~~ww~~~~~~~~vfsD~~~~~~~~~~~~lp~v~i~~d~~~~~y~~~~g~~~a~r 157 (317)
.+++.+||+|||+|+++.|++|.++++.||+++.++.+|+.|....+ ...+..+|++.|+.|+++|.|+++.|+.++++
T Consensus 117 ~~t~~~hIvF~I~~s~~~w~~R~~yik~wW~p~~~rg~v~ld~~~~~-~~~~~~~P~i~is~d~s~f~y~~~~Gh~sa~r 195 (537)
T PLN03153 117 AELSLNHIMFGIAGSSQLWKRRKELVRLWWRPNQMRGHVWLEEQVSP-EEGDDSLPPIMVSEDTSRFRYTNPTGHPSGLR 195 (537)
T ss_pred CCCccccEEEEEEEchhhhhhhhhhhhhhcCcccceeEEEecccCCC-CCCcCCCCCEEeCCCcccccccCCCCcHHHHH
Confidence 46899999999999999999999999999999999999999887542 23467899999999999999999999999999
Q ss_pred HHHHHHHHHHhccccCCccEEEEEcCCccccHHHHHHHHccCCCCCCeEEeecCCCCcccccccccccccCccccccHHH
Q 021089 158 VARVVKEAVDLTDEKAGVRWFVFGDDDTVFFVDNLVKTLSKYDDDRWFYVGSNSEGYEQNAKHSFGMAFGGGGFAISHSL 237 (317)
Q Consensus 158 ~~~~l~~~~~~~~~~~~~kWf~~~DDDTyv~~~nL~~~L~~~d~~~p~yiG~~~e~~~~~~~~g~~~~~GGaG~vlSr~l 237 (317)
+++++.++++.+. +++||||++|||||++++||+++|++||+++++|||..+|...++..++|.|++|||||+||+++
T Consensus 196 I~rmv~et~~~~~--pd~kWfVf~DDDTyf~~~NLv~~Ls~YDptkp~YIGs~Se~~~qn~~f~~~fA~GGAG~~LSrPL 273 (537)
T PLN03153 196 ISRIVLESFRLGL--PDVRWFVLGDDDTIFNADNLVAVLSKYDPSEMVYVGGPSESHSANSYFSHNMAFGGGGIAISYPL 273 (537)
T ss_pred HHHHHHHHHHhhC--CCCCEEEEecCCccccHHHHHHHHhhcCCCCCEEecccccccccccccccccccCCceEEEcHHH
Confidence 9999999988754 99999999999999999999999999999999999999998877777777899999999999999
Q ss_pred HHHHHHhhhhhhhhcccCCcchHHHHHHHHHhCCcceeCCCCCcCccCCccccccccccCCcccccccchhH
Q 021089 238 ARVLAGALDSCLMRYAHLYGSDARVFSCLVELGVGLTPEPGFHQFRCMKAINFFQISFHCREPLRHGGEVQM 309 (317)
Q Consensus 238 l~~L~~~~d~C~~~~~~~~~~D~~lg~Cl~~lGV~lt~~~~f~q~d~~~~d~~g~l~~H~~~P~~s~h~~~~ 309 (317)
|++|.+.++.|..+|...+++|.+||+|++++||++|++++|||.|++| |+.|++++|+.+|++|+||++.
T Consensus 274 ae~L~~~~d~C~~rY~~~~~gD~rL~~CL~elGV~LT~~~gfhQ~D~~G-d~~G~les~p~~P~vSlHH~~~ 344 (537)
T PLN03153 274 AEALSRILDDCLDRYPKLYGSDDRLHACITELGVPLSREPGFHQWDIRG-NAHGLLSSHPIAPFVSIHHVEA 344 (537)
T ss_pred HHHHHHHhhhhhhhcccCCCcHHHHHHHHHHcCCCceecCCccccccCC-CcchHhhcCCCCCceeeeeccc
Confidence 9999999999998887788999999999999999999999999999999 9999999999999999999974
No 2
>PF02434 Fringe: Fringe-like; InterPro: IPR003378 The Notch receptor is a large, cell surface transmembrane protein involved in a wide variety of developmental processes in higher organisms []. It becomes activated when its extracellular region binds to ligands located on adjacent cells. Much of this extracellular region is composed of EGF-like repeats, many of which can be O-fucosylated. A number of these O-fucosylated repeats can in turn be further modified by the action of a beta-1,3-N-acetylglucosaminyltransferase enzyme known as Fringe []. Fringe potentiates the activation of Notch by Delta ligands, while inhibiting activation by Serrate/Jagged ligands. This regulation of Notch signalling by Fringe is important in many processes []. Four distinct Fringe proteins have so far been studied in detail; Drosophila Fringe (Dfng) and its three mammalian homologues Lunatic Fringe (Lfng), Radical Fringe (Rfng) and Manic Fringe (Mfng). Dfng, Lfng and Rfng have all been shown to play important roles in developmental processes within their host, though the phenotype of mutants can vary between species e.g. Rfng mutants are retarded in wing development in chickens, but have no obvious phenotype in mice [, , ]. Mfng mutants have not, so far, been charcterised. Biochemical studies indicate that the Fringe proteins are fucose-specific transferases requiring manganese for activity and utilising UDP-N-acetylglucosamine as a donor substrate []. The three mammalian proteins show distinct variations in their catalytic efficiencies with different substrates. Dfng is a glucosaminyltransferase that controls the response of the Notch receptor to specific ligands which is localised to the Golgi apparatus [] (not secreted as previously thought). Modification of Notch occurs through glycosylation by Dfng. This entry consists of Fringe proteins and related glycosyltransferase enzymes including: Beta-1,3-glucosyltransferase, which glucosylates O-linked fucosylglycan on thrombospondin type 1 repeat domains []. Core 1 beta1,3-galactosyltransferase 1, generates the core T antigen, which is a precursor for many extended O-glycans in glycoproteins and plays a central role in many processes, such as angiogenesis, thrombopoiesis and kidney homeostasis development []. ; GO: 0016757 transferase activity, transferring glycosyl groups, 0016020 membrane; PDB: 2J0B_A 2J0A_A.
Probab=100.00 E-value=1.5e-35 Score=274.51 Aligned_cols=191 Identities=25% Similarity=0.397 Sum_probs=112.5
Q ss_pred CCCCCcEEEEEecCCCchHHHHHHHHHHhCCCCCeEEE-EecCCCCCCCCCCCCCCce----eecCCCCCCccCCCCCch
Q 021089 79 PLTRRHLLFSIASSSSSWPRRRSYVRLWYSPNSTRALT-FLDRAADSSSAGDPSLPRI----VISADTSKFPFTFPKGLR 153 (317)
Q Consensus 79 ~~~~~~I~f~I~Ts~~~~~~R~~~i~~ww~~~~~~~~v-fsD~~~~~~~~~~~~lp~v----~i~~d~~~~~y~~~~g~~ 153 (317)
+++.++|+|+|+|++++|++|+++++.||++++++..+ |+|.++ ..+|+. .+..++.. ++
T Consensus 2 ~~~~~dI~i~V~T~~k~h~tR~~~I~~TW~~~~~~~~~ifsd~~d-------~~l~~~~~~~l~~~~~~~-------~~- 66 (252)
T PF02434_consen 2 PVTLDDIFIAVKTTKKFHKTRAPAIKQTWAKRCNKQTFIFSDAED-------PSLPTVTGVHLVNPNCDA-------GH- 66 (252)
T ss_dssp ---GGGEEEEEE--GGGTTTTHHHHHHTGGGGSGGGEEEEESS---------HHHHHHHGGGEEE---------------
T ss_pred CcccccEEEEEEeCHHHHHHHHHHHHHHHHhhcCCceEEecCccc-------cccccccccccccCCCcc-------hh-
Confidence 57899999999999999999999999999998887777 798874 344543 12233321 11
Q ss_pred hhHHHHHHHHHHHHhccccCCccEEEEEcCCccccHHHHHHHHccCCCCCCeEEeecCCCCcc----------ccccccc
Q 021089 154 SAVRVARVVKEAVDLTDEKAGVRWFVFGDDDTVFFVDNLVKTLSKYDDDRWFYVGSNSEGYEQ----------NAKHSFG 223 (317)
Q Consensus 154 ~a~r~~~~l~~~~~~~~~~~~~kWf~~~DDDTyv~~~nL~~~L~~~d~~~p~yiG~~~e~~~~----------~~~~g~~ 223 (317)
+.+.....+...++++. .+++|||+++||||||+++||+++|++||+++|+|||.++..... ....+|.
T Consensus 67 ~~~~~~~~~~~~y~~~~-~~~~~Wf~~~DDDtyv~~~~L~~~L~~~~~~~~~yiG~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (252)
T PF02434_consen 67 CRKTLSCKMAYEYDHFL-NSDKDWFCFADDDTYVNVENLRRLLSKYDPSEPIYIGRPSGDRPIEIIHRFNPNKSKDSGFW 145 (252)
T ss_dssp ------HHHHHHHHHHH-HHT-SEEEEEETTEEE-HHHHHHHHTTS-TTS--EEE-EE----------------------
T ss_pred hHHHHHHHHHHHHHhhh-cCCceEEEEEeCCceecHHHHHHHHhhCCCccCEEeeeeccCccceeeccccccccCcCceE
Confidence 11111111122232221 278999999999999999999999999999999999999743210 1234567
Q ss_pred ccccCccccccHHHHHHHHHhhhhh--hhhcc-cCCcchHHHHHHHHH-hCCcceeCCCCCcCccC
Q 021089 224 MAFGGGGFAISHSLARVLAGALDSC--LMRYA-HLYGSDARVFSCLVE-LGVGLTPEPGFHQFRCM 285 (317)
Q Consensus 224 ~~~GGaG~vlSr~ll~~L~~~~d~C--~~~~~-~~~~~D~~lg~Cl~~-lGV~lt~~~~f~q~d~~ 285 (317)
|++|||||||||+++++|.+....| ..... ..+++|+.||.|++. +||++++++.|||....
T Consensus 146 f~~GGaG~vlSr~~~~k~~~~~~~~~~~~~~~~~~~~dD~~lG~ci~~~lgv~lt~s~~fhs~~~~ 211 (252)
T PF02434_consen 146 FATGGAGYVLSRALLKKMSPWASGCKCPSTDEKIRLPDDMTLGYCIENLLGVPLTHSPLFHSHLEN 211 (252)
T ss_dssp EE-GGG-EEEEHHHHHHHHHHHTT-TTS--TTTTTS-HHHHHHHHHHHTT---EEE-TT---SSS-
T ss_pred eeCCCeeHHHhHHHHHHHhhhcccccccCCcCCCCCcccChhhhhHHhcCCcceeechhhcccCcc
Confidence 8999999999999999998866544 32111 145799999999998 99999999999997444
No 3
>KOG2246 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.5e-34 Score=279.40 Aligned_cols=206 Identities=29% Similarity=0.429 Sum_probs=172.9
Q ss_pred CCCCCcEEEEEecCCCchHHHHHHHHHHhCCCCCeEEEEecCCCCCCCCCCCCCCceeecCCCCCCccCCCCCchhhHHH
Q 021089 79 PLTRRHLLFSIASSSSSWPRRRSYVRLWYSPNSTRALTFLDRAADSSSAGDPSLPRIVISADTSKFPFTFPKGLRSAVRV 158 (317)
Q Consensus 79 ~~~~~~I~f~I~Ts~~~~~~R~~~i~~ww~~~~~~~~vfsD~~~~~~~~~~~~lp~v~i~~d~~~~~y~~~~g~~~a~r~ 158 (317)
......|+|+|.|++.++.+|++.+++||.++|.+..+|+..-. +.+..+|++. |..+.|.+.+|++
T Consensus 87 l~r~~~v~cwv~t~~~~~~~~~~~v~~TW~~rc~~~~f~s~~~s----~~~~~f~~v~---------~~~~~g~~~~~~k 153 (364)
T KOG2246|consen 87 LSRSGRVLCWVLTSPMRHVTRADAVKETWLKRCDKGIFFSPTLS----KDDSRFPTVY---------YNLPDGYRSLWRK 153 (364)
T ss_pred cCCCceEEEEEEecCcCceeehhhhhcccccccCcceecCccCC----CCCCcCceee---------ccCCcchHHHHHH
Confidence 46778999999999999999999999999998999999984310 1135566663 3344577889998
Q ss_pred HHHH-HHHHHhccccCCccEEEEEcCCccccHHHHHHHHccCCCCCCeEEeecCCCCcccccccccccccCccccccHHH
Q 021089 159 ARVV-KEAVDLTDEKAGVRWFVFGDDDTVFFVDNLVKTLSKYDDDRWFYVGSNSEGYEQNAKHSFGMAFGGGGFAISHSL 237 (317)
Q Consensus 159 ~~~l-~~~~~~~~~~~~~kWf~~~DDDTyv~~~nL~~~L~~~d~~~p~yiG~~~e~~~~~~~~g~~~~~GGaG~vlSr~l 237 (317)
.+.. ++++++.. +++|||+++|||||++++||+++|.+|||++|+|||..++.+.++ + |.+||||+++|+++
T Consensus 154 tr~~~~yv~~~~~--~~~dWf~~aDDDTy~i~eNLr~~L~~yDp~~p~YiG~~~~~~~~~---~--y~~g~ag~~ls~aa 226 (364)
T KOG2246|consen 154 TRIAFKYVYDHIL--KDYDWFLKADDDTYFIMENLRYVLSKYDPEKPVYLGYRSKSYFQN---G--YSSGGAGYVLSFAA 226 (364)
T ss_pred HHHHHHHHHHhcc--CCCCeEEeccCCeEEeHHHHHHHHhhcCCCCcEEecccccccccc---c--cccCCCCcceeHHH
Confidence 8755 45555665 899999999999999999999999999999999999999877654 3 46788888888888
Q ss_pred HHHHHHh----hhhhhhhcccCCcchHHHHHHHHHhCCcceeCCCCCcCccCCccccccccccCCcccccccchhH
Q 021089 238 ARVLAGA----LDSCLMRYAHLYGSDARVFSCLVELGVGLTPEPGFHQFRCMKAINFFQISFHCREPLRHGGEVQM 309 (317)
Q Consensus 238 l~~L~~~----~d~C~~~~~~~~~~D~~lg~Cl~~lGV~lt~~~~f~q~d~~~~d~~g~l~~H~~~P~~s~h~~~~ 309 (317)
++.+++. .+.|+.++.. +++|..||+|++++||+++++ ||.|.++ ++.++..+|+..|.+++||.++
T Consensus 227 ~~~la~~l~~~~~~C~~~~~~-~~eD~~i~~Cl~~~GV~~~d~---~d~dg~~-rf~~~~p~~~~~p~~s~~~~~~ 297 (364)
T KOG2246|consen 227 LRRLAERLLNNEDKCPQRYPS-YGEDRRIGRCLAEVGVPATDE---RDEDGRG-RFLPLLPAHPIAPLVSLHHLWL 297 (364)
T ss_pred HHHHHHHHhcchhhcccccCC-chhHHHHHHHHHHhCCCccCc---hhhhccc-ccCCCChhhccCCcccccccee
Confidence 8887654 4679887665 789999999999999999998 8999999 9999999999999999998874
No 4
>PF04646 DUF604: Protein of unknown function, DUF604; InterPro: IPR006740 This family includes a conserved region found in several uncharacterised plant proteins.
Probab=99.88 E-value=2.8e-23 Score=189.31 Aligned_cols=93 Identities=47% Similarity=0.713 Sum_probs=88.6
Q ss_pred ccccccccccccCccccccHHHHHHHHHhhhhhhhhcccCCcchHHHHHHHHHhCCcceeCCCCCcCccCCccccccccc
Q 021089 216 QNAKHSFGMAFGGGGFAISHSLARVLAGALDSCLMRYAHLYGSDARVFSCLVELGVGLTPEPGFHQFRCMKAINFFQISF 295 (317)
Q Consensus 216 ~~~~~g~~~~~GGaG~vlSr~ll~~L~~~~d~C~~~~~~~~~~D~~lg~Cl~~lGV~lt~~~~f~q~d~~~~d~~g~l~~ 295 (317)
||..++|.||+|||||+||++|+++|.+++|.|++++...+++|.++..|++++||++|.++||||.|++| |+.|++++
T Consensus 1 Qn~~fs~~MAfGGgG~~iS~pLa~~L~~~~d~C~~r~~~~~g~D~~i~~C~~~lgv~LT~e~g~hQ~Di~G-d~~G~~~a 79 (255)
T PF04646_consen 1 QNVMFSYNMAFGGGGFAISYPLAKALAKMQDDCIERYPHLYGGDQRIQACIAELGVPLTKEPGFHQMDIRG-DPSGFLEA 79 (255)
T ss_pred CCceeeccccccCceeEEcHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCceecCCceeEeecc-Ccceeeec
Confidence 45567888999999999999999999999999999998899999999999999999999999999999999 99999999
Q ss_pred cCCcccccccchhH
Q 021089 296 HCREPLRHGGEVQM 309 (317)
Q Consensus 296 H~~~P~~s~h~~~~ 309 (317)
|+..|++|+||||.
T Consensus 80 ~~~~pl~SlHH~~~ 93 (255)
T PF04646_consen 80 HPLAPLVSLHHWDS 93 (255)
T ss_pred CCCCceeeeeehhh
Confidence 99999999999964
No 5
>KOG3708 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.71 E-value=1.5e-17 Score=162.68 Aligned_cols=170 Identities=19% Similarity=0.266 Sum_probs=134.2
Q ss_pred CCCCCCcEEEEEecCCCchHHHHHHHHHHhCCCCCeEEEEecCCCCCCCCCCCCCCceeecCCCCCCccCCCCCchhhHH
Q 021089 78 NPLTRRHLLFSIASSSSSWPRRRSYVRLWYSPNSTRALTFLDRAADSSSAGDPSLPRIVISADTSKFPFTFPKGLRSAVR 157 (317)
Q Consensus 78 ~~~~~~~I~f~I~Ts~~~~~~R~~~i~~ww~~~~~~~~vfsD~~~~~~~~~~~~lp~v~i~~d~~~~~y~~~~g~~~a~r 157 (317)
.-.+.++++++|+|- .+-+.++++|.+++.+++.+|.|+.. ++..+..+.+.... ..+.+|+
T Consensus 21 ELG~RErl~~aVmte----~tlA~a~NrT~ahhvprv~~F~~~~~-----i~~~~a~~~~vs~~---------d~r~~~~ 82 (681)
T KOG3708|consen 21 ELGTRERLMAAVMTE----STLALAINRTLAHHVPRVHLFADSSR-----IDNDLAQLTNVSPY---------DLRGQKT 82 (681)
T ss_pred hhhhHHHHHHHHHHH----HHHHHHHHHHHHhhcceeEEeecccc-----ccccHhhccccCcc---------ccCcccc
Confidence 346778999999991 16668899999999999999998773 23333334332111 1235788
Q ss_pred HHHHHHHHHHhccccCCccEEEEEcCCccccHHHHHHHHccCCCCCCeEEeecCCCCcccccccccccccCccccccHHH
Q 021089 158 VARVVKEAVDLTDEKAGVRWFVFGDDDTVFFVDNLVKTLSKYDDDRWFYVGSNSEGYEQNAKHSFGMAFGGGGFAISHSL 237 (317)
Q Consensus 158 ~~~~l~~~~~~~~~~~~~kWf~~~DDDTyv~~~nL~~~L~~~d~~~p~yiG~~~e~~~~~~~~g~~~~~GGaG~vlSr~l 237 (317)
++.+++++++++. .+||||+++-|+|||+...|.+++.+.+.++++|+|.-.++ ..+ =|++|.|+.||+++
T Consensus 83 ~s~vl~~l~~~~~--~~YDwFll~~D~tYv~a~~L~~l~~hmsin~dlymGEe~~~-----gs~--rC~l~~G~LLS~s~ 153 (681)
T KOG3708|consen 83 HSMVLGLLFNMVH--NNYDWFLLAKDSTYVNAFVLLRLIDHMSINEDLYMGEEAED-----GSG--RCRLDTGMLLSQSL 153 (681)
T ss_pred HHHHHHHHHHhhc--cccceEEEecCcceecHHHHHHHHhhcccccccccchhhhC-----ccC--ccccccceeecHHH
Confidence 8899999999876 89999999999999999999999999999999999955431 112 29999999999999
Q ss_pred HHHHHHhhhhhhhhcccCCcchHHHHHHHHH-hCCccee
Q 021089 238 ARVLAGALDSCLMRYAHLYGSDARVFSCLVE-LGVGLTP 275 (317)
Q Consensus 238 l~~L~~~~d~C~~~~~~~~~~D~~lg~Cl~~-lGV~lt~ 275 (317)
|.+|.++.+.|.+. ...--.|..+|+|+.. +||.++.
T Consensus 154 l~~lrnnle~C~~~-~lsad~d~~lgrCi~~At~v~C~~ 191 (681)
T KOG3708|consen 154 LHALRNNLEGCRND-ILSADPDEWLGRCIQDATGVGCKP 191 (681)
T ss_pred HHHHHhhHHHhhcc-cccCCcHHHHHHHHHHhhcCCccc
Confidence 99999999999642 2222378999999986 7888764
No 6
>KOG2287 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=99.55 E-value=8.5e-14 Score=134.88 Aligned_cols=211 Identities=20% Similarity=0.223 Sum_probs=138.7
Q ss_pred CCcEEEEEecCCCchHHHHHHHHHHhCCC-----CCeEEEEecCCCCCC---CCC---CCCCCceee-c-CCCCCCccCC
Q 021089 82 RRHLLFSIASSSSSWPRRRSYVRLWYSPN-----STRALTFLDRAADSS---SAG---DPSLPRIVI-S-ADTSKFPFTF 148 (317)
Q Consensus 82 ~~~I~f~I~Ts~~~~~~R~~~i~~ww~~~-----~~~~~vfsD~~~~~~---~~~---~~~lp~v~i-~-~d~~~~~y~~ 148 (317)
..+|+++|+|.+++..+|...-++|...+ .-+.+|++.....+. ..+ ......+.+ . .|+ |.+
T Consensus 94 ~~~lLl~V~S~~~~farR~aiR~TW~~~~~v~~~~v~~~FLvG~~~~~~~~~~~l~~Ea~~ygDIi~~df~Dt----y~n 169 (349)
T KOG2287|consen 94 PPELLLLVKSAPDNFARRNAIRKTWGNENNVRGGRVRVLFLVGLPSNEDKLNKLLADEARLYGDIIQVDFEDT----YFN 169 (349)
T ss_pred CceEEEEEecCCCCHHHHHHHHHHhcCccccCCCcEEEEEEecCCCcHHHHHHHHHHHHHHhCCEEEEecccc----hhc
Confidence 46899999999999988855555554443 135555555443210 000 111223322 1 222 211
Q ss_pred CCCchhhHHHHHHHHHHHHhccccCCccEEEEEcCCccccHHHHHHHHccC-CCCCCeEEeecCCCC---------c---
Q 021089 149 PKGLRSAVRVARVVKEAVDLTDEKAGVRWFVFGDDDTVFFVDNLVKTLSKY-DDDRWFYVGSNSEGY---------E--- 215 (317)
Q Consensus 149 ~~g~~~a~r~~~~l~~~~~~~~~~~~~kWf~~~DDDTyv~~~nL~~~L~~~-d~~~p~yiG~~~e~~---------~--- 215 (317)
-..+...++.+...+- +++++.+++|||+||++++|+++|.+. ++++..|.|...... +
T Consensus 170 -----ltlKtl~~l~w~~~~c---p~akfi~K~DDDvfv~~~~L~~~L~~~~~~~~~~~~G~v~~~~~p~R~~~~KwyVp 241 (349)
T KOG2287|consen 170 -----LTLKTLAILLWGVSKC---PDAKFILKIDDDVFVNPDNLLEYLDKLNDPSSDLYYGRVIQNAPPIRDKTSKWYVP 241 (349)
T ss_pred -----hHHHHHHHHHHHHhcC---CcceEEEeccCceEEcHHHHHHHHhccCCCCcceEEEeecccCCCCCCCCCCCccC
Confidence 2345555666665533 899999999999999999999999999 999999999875431 0
Q ss_pred --ccccccccccccCccccccHHHHHHHHHhhhhhhhhcccCC-cchHHHHHHHHHh-CCcceeCCCCCcCccCCc--cc
Q 021089 216 --QNAKHSFGMAFGGGGFAISHSLARVLAGALDSCLMRYAHLY-GSDARVFSCLVEL-GVGLTPEPGFHQFRCMKA--IN 289 (317)
Q Consensus 216 --~~~~~g~~~~~GGaG~vlSr~ll~~L~~~~d~C~~~~~~~~-~~D~~lg~Cl~~l-GV~lt~~~~f~q~d~~~~--d~ 289 (317)
..+...|+-..+|+||++|+.++++|..... ....+ -||+.+|.|+++. ||...+.+++......-+ +.
T Consensus 242 ~~~y~~~~YP~Y~sG~gYvis~~~a~~l~~~s~-----~~~~~~iEDV~~g~~l~~~~gi~~~~~~~~~~~~~~~~~~~~ 316 (349)
T KOG2287|consen 242 ESEYPCSVYPPYASGPGYVISGDAARRLLKASK-----HLKFFPIEDVFVGGCLAEDLGIKPVNHPGFFEIPLSFDPCCY 316 (349)
T ss_pred HHHCCCCCCCCcCCCceeEecHHHHHHHHHHhc-----CCCccchHHHHHHHHHHHhcCCCcccCcccccccccCCCCcc
Confidence 1122234444568899999999999998422 12233 3999999999986 999888877554432111 33
Q ss_pred cccccccCCcccccccchhH
Q 021089 290 FFQISFHCREPLRHGGEVQM 309 (317)
Q Consensus 290 ~g~l~~H~~~P~~s~h~~~~ 309 (317)
.++++.|..+|.-....|+.
T Consensus 317 ~~~~~~H~~~p~e~~~~w~~ 336 (349)
T KOG2287|consen 317 RDLLAVHRLSPNEMIYLWKK 336 (349)
T ss_pred cceEEEecCCHHHHHHHHHH
Confidence 68999999988655555543
No 7
>PLN03133 beta-1,3-galactosyltransferase; Provisional
Probab=99.48 E-value=6.4e-13 Score=136.13 Aligned_cols=209 Identities=12% Similarity=0.095 Sum_probs=126.2
Q ss_pred CCcEEEEEecCCCchHHHHHHHHHHhCCC------CCeEEEEecCCCCC-CC-CC---CCCCCceeecCCCCCCccCCCC
Q 021089 82 RRHLLFSIASSSSSWPRRRSYVRLWYSPN------STRALTFLDRAADS-SS-AG---DPSLPRIVISADTSKFPFTFPK 150 (317)
Q Consensus 82 ~~~I~f~I~Ts~~~~~~R~~~i~~ww~~~------~~~~~vfsD~~~~~-~~-~~---~~~lp~v~i~~d~~~~~y~~~~ 150 (317)
.-+++++|.|++++.+.| .+|+.||++. .-...|++....+. .+ .+ ......+.+. |-. ..|.+
T Consensus 384 ~~~LlI~V~Sap~nf~rR-~AIR~TWg~~~~~~~~~v~~rFvVG~s~n~~l~~~L~~Ea~~ygDIIq~-dF~-DsY~N-- 458 (636)
T PLN03133 384 PLDLFIGVFSTANNFKRR-MAVRRTWMQYDAVRSGAVAVRFFVGLHKNQMVNEELWNEARTYGDIQLM-PFV-DYYSL-- 458 (636)
T ss_pred ceEEEEEEeCCcccHHHH-HHHHHhhccccccCCCceEEEEEEecCCcHHHHHHHHHHHHHcCCeEEE-eee-chhhh--
Confidence 457999999999998877 5555555541 12345555433211 00 00 1112223221 110 01221
Q ss_pred CchhhHHHHHHHHHHHHhccccCCccEEEEEcCCccccHHHHHHHHccCCCCCCeEEeecCCCCc--------------c
Q 021089 151 GLRSAVRVARVVKEAVDLTDEKAGVRWFVFGDDDTVFFVDNLVKTLSKYDDDRWFYVGSNSEGYE--------------Q 216 (317)
Q Consensus 151 g~~~a~r~~~~l~~~~~~~~~~~~~kWf~~~DDDTyv~~~nL~~~L~~~d~~~p~yiG~~~e~~~--------------~ 216 (317)
-.++...++.+... . +++++++++|||+||++++|.++|.+.+..+.+|+|....... .
T Consensus 459 ---LTlKtl~~~~wa~~--c--~~akFilK~DDDvFVnv~~Ll~~L~~~~~~~~Ly~G~v~~~~~PiRd~~sKWYVs~~e 531 (636)
T PLN03133 459 ---ITWKTLAICIFGTE--V--VSAKYVMKTDDDAFVRVDEVLASLKRTNVSHGLLYGLINSDSQPHRNPDSKWYISPEE 531 (636)
T ss_pred ---hHHHHHHHHHHHHh--C--CCceEEEEcCCceEEcHHHHHHHHHhcCCCCceEEEEeccCCCcccCCCCCCCCCHHH
Confidence 13333334444332 2 7899999999999999999999999888888899998642210 1
Q ss_pred cccccccccccCccccccHHHHHHHHHhhhhhhhhcccCCcchHHHHHHHHH---hCCcceeCC--CCCcCccCCccccc
Q 021089 217 NAKHSFGMAFGGGGFAISHSLARVLAGALDSCLMRYAHLYGSDARVFSCLVE---LGVGLTPEP--GFHQFRCMKAINFF 291 (317)
Q Consensus 217 ~~~~g~~~~~GGaG~vlSr~ll~~L~~~~d~C~~~~~~~~~~D~~lg~Cl~~---lGV~lt~~~--~f~q~d~~~~d~~g 291 (317)
++...|+...+|+|||||+.+++.|+....... .....-||+.+|.|+++ .|+++.+.. .|+ .++ ...+
T Consensus 532 yp~~~YPpYasG~gYVlS~Dla~~L~~~s~s~~--l~~f~lEDVyvGi~l~~l~k~gl~v~~~~~~r~~---~~~-C~~~ 605 (636)
T PLN03133 532 WPEETYPPWAHGPGYVVSRDIAKEVYKRHKEGR--LKMFKLEDVAMGIWIAEMKKEGLEVKYENDGRIY---NEG-CKDG 605 (636)
T ss_pred CCCCCCCCCCCcCEEEEcHHHHHHHHHhhhhcc--cCcCChhhHhHHHHHHHhcccCCCceeeCCCccc---CCc-CCCC
Confidence 122345444568899999999999987543211 11122499999999875 466665432 233 234 4467
Q ss_pred cccccCCcccccccchh
Q 021089 292 QISFHCREPLRHGGEVQ 308 (317)
Q Consensus 292 ~l~~H~~~P~~s~h~~~ 308 (317)
++.+|..+|--.+..|+
T Consensus 606 ~i~~H~~sP~eM~~lW~ 622 (636)
T PLN03133 606 YVVAHYQSPREMLCLWQ 622 (636)
T ss_pred eEEEecCCHHHHHHHHH
Confidence 88999999865555553
No 8
>PLN03193 beta-1,3-galactosyltransferase; Provisional
Probab=99.47 E-value=7.4e-13 Score=128.97 Aligned_cols=184 Identities=20% Similarity=0.161 Sum_probs=116.2
Q ss_pred CcEEEEEecCCCchHHHHHHHHHHhCCC-----------CCeEEEEecCCCC---CCC-CC---CCCCCceeecCCCCCC
Q 021089 83 RHLLFSIASSSSSWPRRRSYVRLWYSPN-----------STRALTFLDRAAD---SSS-AG---DPSLPRIVISADTSKF 144 (317)
Q Consensus 83 ~~I~f~I~Ts~~~~~~R~~~i~~ww~~~-----------~~~~~vfsD~~~~---~~~-~~---~~~lp~v~i~~d~~~~ 144 (317)
-.++++|.|++++.+.| .+|+.||++. +-.+.|++....+ ..+ .+ ......+.+. |- ..
T Consensus 139 ~~LvIgI~Sap~~~~RR-~AIR~TWg~~~~~~~kle~~~gv~vrFVIG~s~~~~~~ldr~Le~Ea~~ygDIL~l-Df-vD 215 (408)
T PLN03193 139 YLMVVGINTAFSSRKRR-DSVRATWMPQGEKRKKLEEEKGIIIRFVIGHSATSGGILDRAIEAEDRKHGDFLRL-DH-VE 215 (408)
T ss_pred EEEEEEEeCCCCCHHHH-HHHHHHHcCCcccccccccCCcEEEEEEeecCCCcchHHHHHHHHHHHHhCCEEEE-ec-cc
Confidence 37899999999988766 5555555542 1234445543321 000 01 1122233331 11 01
Q ss_pred ccCCCCCchhhHHHHHHHHHHHHhccccCCccEEEEEcCCccccHHHHHHHHccCCCCCCeEEeecCCCC--cc------
Q 021089 145 PFTFPKGLRSAVRVARVVKEAVDLTDEKAGVRWFVFGDDDTVFFVDNLVKTLSKYDDDRWFYVGSNSEGY--EQ------ 216 (317)
Q Consensus 145 ~y~~~~g~~~a~r~~~~l~~~~~~~~~~~~~kWf~~~DDDTyv~~~nL~~~L~~~d~~~p~yiG~~~e~~--~~------ 216 (317)
.|.+. ..+....++++++. .++++|+++|||+||++++|.++|++......+|+|....+. .+
T Consensus 216 sY~NL-----T~KTl~~f~wA~~~----~dAkF~mK~DDDvfVnv~~L~~~L~~~~~~~rlYiG~m~~gPvr~~~~~ky~ 286 (408)
T PLN03193 216 GYLEL-----SAKTKTYFATAVAM----WDADFYVKVDDDVHVNIATLGETLVRHRKKPRVYIGCMKSGPVLSQKGVRYH 286 (408)
T ss_pred ccccc-----hHHHHHHHHHHHHc----CCCeEEEEcCCCceEcHHHHHHHHHhcCCCCCEEEEecccCccccCCCCcCc
Confidence 23221 23333566665553 689999999999999999999999887766679999974221 00
Q ss_pred ----c----ccccccccccCccccccHHHHHHHHHhhhhhhhhcccCCcchHHHHHHHHHhCCcceeCCCCCcC
Q 021089 217 ----N----AKHSFGMAFGGGGFAISHSLARVLAGALDSCLMRYAHLYGSDARVFSCLVELGVGLTPEPGFHQF 282 (317)
Q Consensus 217 ----~----~~~g~~~~~GGaG~vlSr~ll~~L~~~~d~C~~~~~~~~~~D~~lg~Cl~~lGV~lt~~~~f~q~ 282 (317)
. ....|+....|+|||||+.+++.|..+...- ..| -.||+.+|.|+..++|...+.+.||-.
T Consensus 287 epe~w~~~~~~~~YPpyAsG~gYVlS~DLa~~I~~n~~~L-~~y---~~EDV~vG~Wl~~L~V~~vdd~~fcc~ 356 (408)
T PLN03193 287 EPEYWKFGENGNKYFRHATGQLYAISKDLASYISINQHVL-HKY---ANEDVSLGSWFIGLDVEHIDDRRLCCG 356 (408)
T ss_pred CcccccccCccccCCCCCCcceEEehHHHHHHHHhChhhh-ccc---CcchhhhhhHhccCCceeeecccccCC
Confidence 0 1122333345788999999999998654422 111 249999999999899999999999854
No 9
>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane
Probab=99.34 E-value=1.4e-11 Score=109.59 Aligned_cols=114 Identities=18% Similarity=0.171 Sum_probs=85.6
Q ss_pred hHHHHHHHHHHHHhccccCCccEEEEEcCCccccHHHHHHHHccC--CCCCCeEEeecCCCCc--------------cc-
Q 021089 155 AVRVARVVKEAVDLTDEKAGVRWFVFGDDDTVFFVDNLVKTLSKY--DDDRWFYVGSNSEGYE--------------QN- 217 (317)
Q Consensus 155 a~r~~~~l~~~~~~~~~~~~~kWf~~~DDDTyv~~~nL~~~L~~~--d~~~p~yiG~~~e~~~--------------~~- 217 (317)
..+...+++++.++. +++++++++|||+||++++|.++|.+. ++.+..+.|....... ..
T Consensus 64 t~K~~~~~~w~~~~c---~~~~~v~k~DDD~~vn~~~l~~~L~~~~~~~~~~~~~g~~~~~~~~~r~~~~kw~v~~~~y~ 140 (195)
T PF01762_consen 64 TLKTLAGLKWASKHC---PNAKYVLKVDDDVFVNPDRLVSFLKSLKQDPSKNSIYGGCIKNGPPIRDPSSKWYVSEEEYP 140 (195)
T ss_pred hHHHHHHHHHHHhhC---CchhheeecCcEEEEehHHhhhhhhhcccCccccccccccccCCccccccccCceeeeeecc
Confidence 345556788887754 789999999999999999999999887 7777888887653210 01
Q ss_pred -ccccccccccCccccccHHHHHHHHHhhhhhhhhcccCCcchHHHHHHHHHhCCcceeCC
Q 021089 218 -AKHSFGMAFGGGGFAISHSLARVLAGALDSCLMRYAHLYGSDARVFSCLVELGVGLTPEP 277 (317)
Q Consensus 218 -~~~g~~~~~GGaG~vlSr~ll~~L~~~~d~C~~~~~~~~~~D~~lg~Cl~~lGV~lt~~~ 277 (317)
..+. +||. |+||+||+.+++.|...... .+...-||+.+|.|+..+||+.++.|
T Consensus 141 ~~~yP-~y~~-G~~yvls~~~v~~i~~~~~~----~~~~~~eDv~iGi~~~~~~i~~~~~~ 195 (195)
T PF01762_consen 141 DDYYP-PYCS-GGGYVLSSDVVKRIYKASSH----TPFFPLEDVFIGILAEKLGIKPIHDP 195 (195)
T ss_pred cccCC-CcCC-CCeEEecHHHHHHHHHHhhc----CCCCCchHHHHHHHHHHCCCCccCCC
Confidence 1222 4665 78999999999999975322 22233499999999999999988754
No 10
>KOG2288 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=99.00 E-value=1.1e-09 Score=100.21 Aligned_cols=115 Identities=22% Similarity=0.278 Sum_probs=84.2
Q ss_pred HHHHHHHHhccccCCccEEEEEcCCccccHHHHHHHHccCCCCCCeEEeecCCCC-------------ccccc--ccccc
Q 021089 160 RVVKEAVDLTDEKAGVRWFVFGDDDTVFFVDNLVKTLSKYDDDRWFYVGSNSEGY-------------EQNAK--HSFGM 224 (317)
Q Consensus 160 ~~l~~~~~~~~~~~~~kWf~~~DDDTyv~~~nL~~~L~~~d~~~p~yiG~~~e~~-------------~~~~~--~g~~~ 224 (317)
..+..+++++ ++++|+++|||+||+++.|...|+++-....+|||-...+- +.... .-|++
T Consensus 98 ~~f~~A~~~~----daeFyvKvDDDv~v~l~~L~~~la~~r~~pr~YiGcmksg~v~~~~~~kw~EpeWkfg~~g~Yfrh 173 (274)
T KOG2288|consen 98 AFFSAAVAHW----DAEFYVKVDDDVYVRLARLGTLLARERSHPRLYIGCMKSGPVLTQPGGKWYEPEWKFGDNGNYFRH 173 (274)
T ss_pred HHHHHHHHhc----cceEEEEccccceecHHHHHHHHHhhccCCceEEEEecCCccccCCCCcccChhhhcCcccccchh
Confidence 4555556554 79999999999999999999999999777899999964221 00111 13455
Q ss_pred cccCccccccHHHHHHHHHhhhhhhhhcccCC-cchHHHHHHHHHhCCcceeCCCCCcCcc
Q 021089 225 AFGGGGFAISHSLARVLAGALDSCLMRYAHLY-GSDARVFSCLVELGVGLTPEPGFHQFRC 284 (317)
Q Consensus 225 ~~GGaG~vlSr~ll~~L~~~~d~C~~~~~~~~-~~D~~lg~Cl~~lGV~lt~~~~f~q~d~ 284 (317)
|. |+||+||+.++.-|.-+.+-- ..| .|||.+|..+.-+.|.-.+.+.+|....
T Consensus 174 A~-G~~YvlS~dLa~yi~in~~lL-----~~y~nEDVSlGaW~~gldV~h~dd~rlC~~~~ 228 (274)
T KOG2288|consen 174 AT-GGGYVLSKDLATYISINRQLL-----HKYANEDVSLGAWMIGLDVEHVDDPRLCCSTP 228 (274)
T ss_pred cc-CceEEeeHHHHHHHHHhHHHH-----HhhccCCcccceeeeeeeeeEecCCcccccch
Confidence 65 678999999999988764432 223 3999999998777777777788885544
No 11
>PTZ00210 UDP-GlcNAc-dependent glycosyltransferase; Provisional
Probab=98.98 E-value=4.5e-09 Score=101.48 Aligned_cols=105 Identities=17% Similarity=0.159 Sum_probs=72.5
Q ss_pred HHHHHHHHHhccccCCccEEEEEcCCccccHHHHHHHHccCCCCCCeEEeecCCCCcccccccccccccCccccccHHHH
Q 021089 159 ARVVKEAVDLTDEKAGVRWFVFGDDDTVFFVDNLVKTLSKYDDDRWFYVGSNSEGYEQNAKHSFGMAFGGGGFAISHSLA 238 (317)
Q Consensus 159 ~~~l~~~~~~~~~~~~~kWf~~~DDDTyv~~~nL~~~L~~~d~~~p~yiG~~~e~~~~~~~~g~~~~~GGaG~vlSr~ll 238 (317)
...+++.++.. |++++++++|||+|++++++++.|.. .|.+.+|+|.............-+|| +|.||+||+.++
T Consensus 187 ~l~~~wA~~~c---P~a~YImKgDDDvFVrVp~lL~~Lr~-~prr~LY~G~v~~~~~p~Rd~~PpY~-~G~gYvLSrDVA 261 (382)
T PTZ00210 187 YLWLRFALHMF---PNVSYIVKGDDDIFIRVPKYLADLRV-MPRHGLYMGRYNYYNRIWRRNQLTYV-NGYCITLSRDTA 261 (382)
T ss_pred HHHHHHHHHhC---CCCCeEEEcCCCeEeeHHHHHHHHhh-CCCCceEEEeeCCCCccccCCCCCcc-ccceeeccHHHH
Confidence 34556666543 89999999999999999999999954 56778999997643221111112455 578899999999
Q ss_pred HHHHHhhhhhh-----------hhccc--CCcchHHHHHHHHH
Q 021089 239 RVLAGALDSCL-----------MRYAH--LYGSDARVFSCLVE 268 (317)
Q Consensus 239 ~~L~~~~d~C~-----------~~~~~--~~~~D~~lg~Cl~~ 268 (317)
+.|.....-.. +.|.. ...||+.+|..|..
T Consensus 262 ~~Lvs~~pl~rL~~~pys~~~~~~y~~~~~~~EDiMvG~vLr~ 304 (382)
T PTZ00210 262 QAIISYKPLERLVNMPFSMWDYFDFLDLGMFYEDVMVGMILRE 304 (382)
T ss_pred HHHHhhChHhHhhcCCCchHHHHHHHHhhcCchHHHHHHHHHH
Confidence 99986521110 11111 22499999999964
No 12
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=95.78 E-value=0.045 Score=47.96 Aligned_cols=99 Identities=19% Similarity=0.223 Sum_probs=67.4
Q ss_pred CCccEEEEEcCCccccHHHHHHHHccCC-CCCC----eEEeecCCCCcc--------------cccccccccccCccccc
Q 021089 173 AGVRWFVFGDDDTVFFVDNLVKTLSKYD-DDRW----FYVGSNSEGYEQ--------------NAKHSFGMAFGGGGFAI 233 (317)
Q Consensus 173 ~~~kWf~~~DDDTyv~~~nL~~~L~~~d-~~~p----~yiG~~~e~~~~--------------~~~~g~~~~~GGaG~vl 233 (317)
.+++++++.|+|+.+..+-|.++++.+. |+-. +|.|.+.++... ....+.+++.| +.+++
T Consensus 30 a~~d~~~~~DsDi~v~p~~L~~lv~~l~~p~vglVt~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~G-~~m~~ 108 (175)
T PF13506_consen 30 AKYDYLVISDSDIRVPPDYLRELVAPLADPGVGLVTGLPRGVPARGFWSRLEAAFFNFLPGVLQALGGAPFAWG-GSMAF 108 (175)
T ss_pred CCCCEEEEECCCeeECHHHHHHHHHHHhCCCCcEEEecccccCCcCHHHHHHHHHHhHHHHHHHHhcCCCceec-ceeee
Confidence 5799999999999999999999988773 4433 333443332210 00123345654 55999
Q ss_pred cHHHHHHHHHhhhhhhhhcccCCcchHHHHHHHHHhCCcceeCC
Q 021089 234 SHSLARVLAGALDSCLMRYAHLYGSDARVFSCLVELGVGLTPEP 277 (317)
Q Consensus 234 Sr~ll~~L~~~~d~C~~~~~~~~~~D~~lg~Cl~~lGV~lt~~~ 277 (317)
.+++++++... +. .....+||..+|+.+++.|.++...+
T Consensus 109 rr~~L~~~GG~-~~----l~~~ladD~~l~~~~~~~G~~v~~~~ 147 (175)
T PF13506_consen 109 RREALEEIGGF-EA----LADYLADDYALGRRLRARGYRVVLSP 147 (175)
T ss_pred EHHHHHHcccH-HH----HhhhhhHHHHHHHHHHHCCCeEEEcc
Confidence 99999886421 11 12345799999999999998877665
No 13
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=95.08 E-value=2.2 Score=41.71 Aligned_cols=96 Identities=15% Similarity=0.150 Sum_probs=59.2
Q ss_pred CCccEEEEEcCCccccHHHHHHHHccCCCCC-CeEEeecC---CCCcc--------------------c-cccccccccc
Q 021089 173 AGVRWFVFGDDDTVFFVDNLVKTLSKYDDDR-WFYVGSNS---EGYEQ--------------------N-AKHSFGMAFG 227 (317)
Q Consensus 173 ~~~kWf~~~DDDTyv~~~nL~~~L~~~d~~~-p~yiG~~~---e~~~~--------------------~-~~~g~~~~~G 227 (317)
++.+|+++.|+|+.+..+.|.++++.+.... .+.-|.+. +.... . .......+ -
T Consensus 132 ~~gd~llflDaD~~~~p~~l~~lv~~~~~~~~~~vs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 210 (384)
T TIGR03469 132 PPADYLLLTDADIAHGPDNLARLVARARAEGLDLVSLMVRLRCESFWEKLLIPAFVFFFQKLYPFRWVNDPRRRTAAA-A 210 (384)
T ss_pred CCCCEEEEECCCCCCChhHHHHHHHHHHhCCCCEEEecccccCCCHHHHHHHHHHHHHHHHhcchhhhcCCCccceee-c
Confidence 4489999999999999888888887664322 33222221 11000 0 00000112 3
Q ss_pred CccccccHHHHHHHHHhhhhhhhhcccCCcchHHHHHHHHHhCCcce
Q 021089 228 GGGFAISHSLARVLAGALDSCLMRYAHLYGSDARVFSCLVELGVGLT 274 (317)
Q Consensus 228 GaG~vlSr~ll~~L~~~~d~C~~~~~~~~~~D~~lg~Cl~~lGV~lt 274 (317)
|+++++++++.+++-...+.. ....||..+++-+++.|.++.
T Consensus 211 G~~~lirr~~~~~vGGf~~~~-----~~~~ED~~L~~r~~~~G~~v~ 252 (384)
T TIGR03469 211 GGCILIRREALERIGGIAAIR-----GALIDDCTLAAAVKRSGGRIW 252 (384)
T ss_pred ceEEEEEHHHHHHcCCHHHHh-----hCcccHHHHHHHHHHcCCcEE
Confidence 678999999999986542211 124599999999998875543
No 14
>PRK11204 N-glycosyltransferase; Provisional
Probab=95.03 E-value=0.93 Score=44.53 Aligned_cols=98 Identities=15% Similarity=0.049 Sum_probs=62.4
Q ss_pred CCccEEEEEcCCccccHHHHHHHHccC--CCCCCeEEeecCC--CC-----cc--------------cccccccccccCc
Q 021089 173 AGVRWFVFGDDDTVFFVDNLVKTLSKY--DDDRWFYVGSNSE--GY-----EQ--------------NAKHSFGMAFGGG 229 (317)
Q Consensus 173 ~~~kWf~~~DDDTyv~~~nL~~~L~~~--d~~~p~yiG~~~e--~~-----~~--------------~~~~g~~~~~GGa 229 (317)
.+.+|+++.|+|+.+..+.|.++++.+ |++-...-|.+.- .. .+ ....+..++.+|+
T Consensus 133 a~~d~i~~lDaD~~~~~d~L~~l~~~~~~~~~v~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 212 (420)
T PRK11204 133 ARSEYLVCIDGDALLDPDAAAYMVEHFLHNPRVGAVTGNPRIRNRSTLLGRIQVGEFSSIIGLIKRAQRVYGRVFTVSGV 212 (420)
T ss_pred cCCCEEEEECCCCCCChhHHHHHHHHHHhCCCeEEEECCceeccchhHHHHHHHHHHHHhhhHHHHHHHHhCCceEecce
Confidence 468999999999999999999998887 4432233333210 00 00 0111212344678
Q ss_pred cccccHHHHHHHHHhhhhhhhhcccCCcchHHHHHHHHHhCCcceeCC
Q 021089 230 GFAISHSLARVLAGALDSCLMRYAHLYGSDARVFSCLVELGVGLTPEP 277 (317)
Q Consensus 230 G~vlSr~ll~~L~~~~d~C~~~~~~~~~~D~~lg~Cl~~lGV~lt~~~ 277 (317)
+.++.+++++++..- ++ ....||..++.-+.+.|.++.-.|
T Consensus 213 ~~~~rr~~l~~vgg~-~~------~~~~ED~~l~~rl~~~G~~i~~~p 253 (420)
T PRK11204 213 ITAFRKSALHEVGYW-ST------DMITEDIDISWKLQLRGWDIRYEP 253 (420)
T ss_pred eeeeeHHHHHHhCCC-CC------CcccchHHHHHHHHHcCCeEEecc
Confidence 889999998886431 11 134699999999888887765444
No 15
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=94.74 E-value=0.072 Score=43.94 Aligned_cols=85 Identities=19% Similarity=0.167 Sum_probs=59.8
Q ss_pred CCccEEEEEcCCccccHHHHHHHHccCCCCCC-eEEeecCCCCcccccccccccccCccccccHHHHHHHHHhhhhhhhh
Q 021089 173 AGVRWFVFGDDDTVFFVDNLVKTLSKYDDDRW-FYVGSNSEGYEQNAKHSFGMAFGGGGFAISHSLARVLAGALDSCLMR 251 (317)
Q Consensus 173 ~~~kWf~~~DDDTyv~~~nL~~~L~~~d~~~p-~yiG~~~e~~~~~~~~g~~~~~GGaG~vlSr~ll~~L~~~~d~C~~~ 251 (317)
-+.+|++++|||.++..+.+.+++..+..... ..+|.. ..|+++++++++++++..-.+.+
T Consensus 73 ~~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~--- 134 (166)
T cd04186 73 AKGDYVLLLNPDTVVEPGALLELLDAAEQDPDVGIVGPK---------------VSGAFLLVRREVFEEVGGFDEDF--- 134 (166)
T ss_pred CCCCEEEEECCCcEECccHHHHHHHHHHhCCCceEEEcc---------------CceeeEeeeHHHHHHcCCCChhh---
Confidence 36899999999999998888888876543322 233332 35788999999999875322222
Q ss_pred cccCCcchHHHHHHHHHhCCcceeCC
Q 021089 252 YAHLYGSDARVFSCLVELGVGLTPEP 277 (317)
Q Consensus 252 ~~~~~~~D~~lg~Cl~~lGV~lt~~~ 277 (317)
..+++|..+...+.+.|.++...|
T Consensus 135 --~~~~eD~~~~~~~~~~g~~i~~~~ 158 (166)
T cd04186 135 --FLYYEDVDLCLRARLAGYRVLYVP 158 (166)
T ss_pred --hccccHHHHHHHHHHcCCeEEEcc
Confidence 125689999988888887776544
No 16
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=94.17 E-value=2.1 Score=41.66 Aligned_cols=99 Identities=18% Similarity=0.181 Sum_probs=62.8
Q ss_pred CCccEEEEEcCCccccHHHHHHHHccCC-CCCCeEEeecC----CCCcc-------c----------cc-ccccccccCc
Q 021089 173 AGVRWFVFGDDDTVFFVDNLVKTLSKYD-DDRWFYVGSNS----EGYEQ-------N----------AK-HSFGMAFGGG 229 (317)
Q Consensus 173 ~~~kWf~~~DDDTyv~~~nL~~~L~~~d-~~~p~yiG~~~----e~~~~-------~----------~~-~g~~~~~GGa 229 (317)
.+.+|+++.|+|+.+..+-|.++++.+. ++....-|... .+... + .. ....++ .|+
T Consensus 125 a~ge~i~~~DaD~~~~p~~L~~lv~~~~~~~v~~V~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~G~ 203 (373)
T TIGR03472 125 ARHDILVIADSDISVGPDYLRQVVAPLADPDVGLVTCLYRGRPVPGFWSRLGAMGINHNFLPSVMVARALGRARFC-FGA 203 (373)
T ss_pred ccCCEEEEECCCCCcChhHHHHHHHHhcCCCcceEeccccCCCCCCHHHHHHHHHhhhhhhHHHHHHHhccCCccc-cCh
Confidence 5789999999999999999999988874 33333323211 11000 0 00 011123 467
Q ss_pred cccccHHHHHHHHHhhhhhhhhcccCCcchHHHHHHHHHhCCcceeCC
Q 021089 230 GFAISHSLARVLAGALDSCLMRYAHLYGSDARVFSCLVELGVGLTPEP 277 (317)
Q Consensus 230 G~vlSr~ll~~L~~~~d~C~~~~~~~~~~D~~lg~Cl~~lGV~lt~~~ 277 (317)
.+++.|++++++... +. ......||..++.-+.+.|.++...+
T Consensus 204 ~~a~RR~~l~~iGGf-~~----~~~~~~ED~~l~~~i~~~G~~v~~~~ 246 (373)
T TIGR03472 204 TMALRRATLEAIGGL-AA----LAHHLADDYWLGELVRALGLRVVLAP 246 (373)
T ss_pred hhheeHHHHHHcCCh-HH----hcccchHHHHHHHHHHHcCCeEEecc
Confidence 789999999987653 21 11234599999999998887765443
No 17
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=93.92 E-value=0.14 Score=44.74 Aligned_cols=86 Identities=17% Similarity=0.180 Sum_probs=60.8
Q ss_pred CCccEEEEEcCCccccHHHHHHHHccC-CCCCCeEEeecCCCCcccccccccccccCccccccHHHHHHHHHhhhhhhhh
Q 021089 173 AGVRWFVFGDDDTVFFVDNLVKTLSKY-DDDRWFYVGSNSEGYEQNAKHSFGMAFGGGGFAISHSLARVLAGALDSCLMR 251 (317)
Q Consensus 173 ~~~kWf~~~DDDTyv~~~nL~~~L~~~-d~~~p~yiG~~~e~~~~~~~~g~~~~~GGaG~vlSr~ll~~L~~~~d~C~~~ 251 (317)
...+|+++.|+|+.+..+-|.++++.+ ++.-....|. +..|++.++.+++++++..- +.
T Consensus 85 a~~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~~~v~~~---------------~~~g~~~~~r~~~~~~~ggf-~~---- 144 (196)
T cd02520 85 ARYDILVISDSDISVPPDYLRRMVAPLMDPGVGLVTCL---------------CAFGKSMALRREVLDAIGGF-EA---- 144 (196)
T ss_pred CCCCEEEEECCCceEChhHHHHHHHHhhCCCCCeEEee---------------cccCceeeeEHHHHHhccCh-HH----
Confidence 468999999999999888888888775 3332233332 23478899999999987543 21
Q ss_pred cccCCcchHHHHHHHHHhCCcceeCCC
Q 021089 252 YAHLYGSDARVFSCLVELGVGLTPEPG 278 (317)
Q Consensus 252 ~~~~~~~D~~lg~Cl~~lGV~lt~~~~ 278 (317)
......+|..++.-+.+.|.++...|.
T Consensus 145 ~~~~~~eD~~l~~rl~~~G~~i~~~~~ 171 (196)
T cd02520 145 FADYLAEDYFLGKLIWRLGYRVVLSPY 171 (196)
T ss_pred HhHHHHHHHHHHHHHHHcCCeEEEcch
Confidence 111235899999999888887765543
No 18
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=93.65 E-value=2.3 Score=37.55 Aligned_cols=103 Identities=17% Similarity=0.084 Sum_probs=60.8
Q ss_pred CCccEEEEEcCCccccHHHHHHHHccCCCCCCeEEeec-C--C---CCc----c-------------cccccccccccCc
Q 021089 173 AGVRWFVFGDDDTVFFVDNLVKTLSKYDDDRWFYVGSN-S--E---GYE----Q-------------NAKHSFGMAFGGG 229 (317)
Q Consensus 173 ~~~kWf~~~DDDTyv~~~nL~~~L~~~d~~~p~yiG~~-~--e---~~~----~-------------~~~~g~~~~~GGa 229 (317)
.+.+|++++|+|+.+..+.|.+++..++..+--.+|.. . . ... . ....+--++..|+
T Consensus 76 a~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 155 (235)
T cd06434 76 VTTDIVVLLDSDTVWPPNALPEMLKPFEDPKVGGVGTNQRILRPRDSKWSFLAAEYLERRNEEIRAAMSYDGGVPCLSGR 155 (235)
T ss_pred hCCCEEEEECCCceeChhHHHHHHHhccCCCEeEEcCceEeecCcccHHHHHHHHHHHHHHHHHHHHHhhCCCEEEccCc
Confidence 46899999999999999999999988852222222221 1 0 000 0 0011111234566
Q ss_pred cccccHHHHHHHHHhhh---hhhhhcccCCcchHHHHHHHHHhCCccee
Q 021089 230 GFAISHSLARVLAGALD---SCLMRYAHLYGSDARVFSCLVELGVGLTP 275 (317)
Q Consensus 230 G~vlSr~ll~~L~~~~d---~C~~~~~~~~~~D~~lg~Cl~~lGV~lt~ 275 (317)
..++.++++++...... ++.-......+||..++.=+.+.|.++.-
T Consensus 156 ~~~~rr~~l~~~~~~~~~~~~~~~~~~~~~~eD~~l~~~~~~~g~~~~~ 204 (235)
T cd06434 156 TAAYRTEILKDFLFLEEFTNETFMGRRLNAGDDRFLTRYVLSHGYKTVY 204 (235)
T ss_pred HHHHHHHHHhhhhhHHHhhhhhhcCCCCCcCchHHHHHHHHHCCCeEEE
Confidence 67888888887643211 22211223456899998888777776543
No 19
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=93.20 E-value=3.6 Score=36.30 Aligned_cols=100 Identities=17% Similarity=0.070 Sum_probs=57.8
Q ss_pred CCccEEEEEcCCccccHHHHHHHH---ccCCCCCCe-EEeecCCC-C-------ccccc----------ccc--cccccC
Q 021089 173 AGVRWFVFGDDDTVFFVDNLVKTL---SKYDDDRWF-YVGSNSEG-Y-------EQNAK----------HSF--GMAFGG 228 (317)
Q Consensus 173 ~~~kWf~~~DDDTyv~~~nL~~~L---~~~d~~~p~-yiG~~~e~-~-------~~~~~----------~g~--~~~~GG 228 (317)
.+++|+++.|||+.+..+.|.+++ ..+...... ..|..... . ..... ... .....|
T Consensus 74 ~~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (237)
T cd02526 74 NGADYVLLFDQDSVPPPDMVEKLLAYKILSDKNSNIGAVGPRIIDRRTGENSPGVRKSGYKLRIQKEGEEGLKEVDFLIT 153 (237)
T ss_pred CCCCEEEEECCCCCcCHhHHHHHHHHHHhhccCCCeEEEeeeEEcCCCCeeccceeccCccceecccccCCceEeeeeec
Confidence 478999999999999988888885 333222222 22221100 0 00000 000 011236
Q ss_pred ccccccHHHHHHHHHhhhhhhhhcccCCcchHHHHHHHHHhCCcceeCC
Q 021089 229 GGFAISHSLARVLAGALDSCLMRYAHLYGSDARVFSCLVELGVGLTPEP 277 (317)
Q Consensus 229 aG~vlSr~ll~~L~~~~d~C~~~~~~~~~~D~~lg~Cl~~lGV~lt~~~ 277 (317)
+|.++++++++++....+.. ...++|..+..-+.+.|..+...|
T Consensus 154 ~~~~~rr~~~~~~ggfd~~~-----~~~~eD~d~~~r~~~~G~~~~~~~ 197 (237)
T cd02526 154 SGSLISLEALEKVGGFDEDL-----FIDYVDTEWCLRARSKGYKIYVVP 197 (237)
T ss_pred cceEEcHHHHHHhCCCCHHH-----cCccchHHHHHHHHHcCCcEEEEc
Confidence 78899999999876432221 123479999888888887765443
No 20
>PLN03181 glycosyltransferase; Provisional
Probab=93.07 E-value=0.35 Score=48.03 Aligned_cols=56 Identities=23% Similarity=0.290 Sum_probs=37.2
Q ss_pred chhhHHHHHHHHHHHHhccccCCccEEEEEcCCccccHHHHHHHHccCCCCCCeEEeec
Q 021089 152 LRSAVRVARVVKEAVDLTDEKAGVRWFVFGDDDTVFFVDNLVKTLSKYDDDRWFYVGSN 210 (317)
Q Consensus 152 ~~~a~r~~~~l~~~~~~~~~~~~~kWf~~~DDDTyv~~~nL~~~L~~~d~~~p~yiG~~ 210 (317)
.+..|....+++.+...+ |+++||..+|-|+++-=.++.--|.+|+.-.-+..|.+
T Consensus 179 ~p~~WaKipalRaAM~a~---PeAEWfWWLDsDALIMNp~~sLPl~ry~~~NLvvhg~p 234 (453)
T PLN03181 179 MNSYWAKLPVVRAAMLAH---PEAEWIWWVDSDAVFTDMDFKLPLHRYRDHNLVVHGWP 234 (453)
T ss_pred CchhhhHHHHHHHHHHHC---CCceEEEEecCCceeecCCCCCCHhhcCCccccccCCc
Confidence 345787778888866654 99999999999999873332223556654333333444
No 21
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=92.90 E-value=4.2 Score=40.61 Aligned_cols=98 Identities=12% Similarity=-0.032 Sum_probs=63.7
Q ss_pred CCccEEEEEcCCccccHHHHHHHHccC--CCCCCeEEeecCC----CC-c--c---c-----------ccccccccccCc
Q 021089 173 AGVRWFVFGDDDTVFFVDNLVKTLSKY--DDDRWFYVGSNSE----GY-E--Q---N-----------AKHSFGMAFGGG 229 (317)
Q Consensus 173 ~~~kWf~~~DDDTyv~~~nL~~~L~~~--d~~~p~yiG~~~e----~~-~--~---~-----------~~~g~~~~~GGa 229 (317)
.+.+++++.|+|+.+..+.|.++++.+ |++-...-|.+.. .. . + . ..+|-.++.+|+
T Consensus 154 a~~d~iv~lDAD~~~~~d~L~~lv~~~~~~~~~g~v~g~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~g~~~~~sG~ 233 (444)
T PRK14583 154 ARSEYLVCIDGDALLDKNAVPYLVAPLIANPRTGAVTGNPRIRTRSTLIGRVQVGEFSSIIGLIKRTQRVYGQVFTVSGV 233 (444)
T ss_pred CCCCEEEEECCCCCcCHHHHHHHHHHHHhCCCeEEEEccceecCCCcchhhHHHHHHHHHHHHHHHHHHHhCCceEecCc
Confidence 568999999999999999998888776 4433333333210 00 0 0 0 112223455688
Q ss_pred cccccHHHHHHHHHhhhhhhhhcccCCcchHHHHHHHHHhCCcceeCC
Q 021089 230 GFAISHSLARVLAGALDSCLMRYAHLYGSDARVFSCLVELGVGLTPEP 277 (317)
Q Consensus 230 G~vlSr~ll~~L~~~~d~C~~~~~~~~~~D~~lg~Cl~~lGV~lt~~~ 277 (317)
+.++.+.+++++.... .....||..++.-+...|.++..+|
T Consensus 234 ~~~~rr~al~~vGg~~-------~~~i~ED~dl~~rl~~~G~~i~~~p 274 (444)
T PRK14583 234 VAAFRRRALADVGYWS-------PDMITEDIDISWKLQLKHWSVFFEP 274 (444)
T ss_pred eeEEEHHHHHHcCCCC-------CCcccccHHHHHHHHHcCCeEEEee
Confidence 8889999988864321 1234699999999998888766555
No 22
>PF01755 Glyco_transf_25: Glycosyltransferase family 25 (LPS biosynthesis protein); InterPro: IPR002654 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 25 GT25 from CAZY comprises enzymes with only one known activity; as a lipopolysaccharide biosynthesis protein. These enzymes catalyse the transfer of various sugars onto the growing lipopolysaccharide chain during its biosynthesis [].; GO: 0009103 lipopolysaccharide biosynthetic process
Probab=92.84 E-value=0.38 Score=42.31 Aligned_cols=87 Identities=23% Similarity=0.292 Sum_probs=51.2
Q ss_pred hhHHHHHHHHHHHHhccccCCccEEEEEcCCccccHH---HHHHHHccCCCCCCeEEeecCC------------------
Q 021089 154 SAVRVARVVKEAVDLTDEKAGVRWFVFGDDDTVFFVD---NLVKTLSKYDDDRWFYVGSNSE------------------ 212 (317)
Q Consensus 154 ~a~r~~~~l~~~~~~~~~~~~~kWf~~~DDDTyv~~~---nL~~~L~~~d~~~p~yiG~~~e------------------ 212 (317)
|+..+..+.+.+.+ .+.++.++.|||.++..+ .|.+.++..+...-+++|....
T Consensus 70 C~lSH~~~w~~~v~-----~~~~~~lIlEDDv~~~~~f~~~l~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~ 144 (200)
T PF01755_consen 70 CALSHIKAWQRIVD-----SGLEYALILEDDVIFDPDFKEFLEEILSHIPDWDFLRLGGWKDNSYSPGDIFLSRLSTFLS 144 (200)
T ss_pred ehhhHHHHHHHHHH-----cCCCeEEEEeccccccccHHHHHHHHHhhcccccchhhccccccccccccccceeeeehhh
Confidence 56666677777775 578999999999998833 2333333322222333322110
Q ss_pred CCcc--cc----------cccccccccCccccccHHHHHHHHHhh
Q 021089 213 GYEQ--NA----------KHSFGMAFGGGGFAISHSLARVLAGAL 245 (317)
Q Consensus 213 ~~~~--~~----------~~g~~~~~GGaG~vlSr~ll~~L~~~~ 245 (317)
.... .. .....+..|.+||++|+.++++|....
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~t~aY~Is~~gA~kLL~~~ 189 (200)
T PF01755_consen 145 RSKRYKRKPIPPFGSRKLIRPAKYPYGTCAYLISRKGARKLLEAS 189 (200)
T ss_pred hhhhcccCcccccCCceEEeecCCCCcceeeeeCHHHHHHHHHhC
Confidence 0000 00 001124667889999999999999863
No 23
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=92.37 E-value=1.1 Score=41.26 Aligned_cols=97 Identities=13% Similarity=0.047 Sum_probs=53.4
Q ss_pred CCccEEEEEcCCccccHHHHHHHHccCCCC--CCeEEeecC-C--C---Cc---c----------cccccc--cccccCc
Q 021089 173 AGVRWFVFGDDDTVFFVDNLVKTLSKYDDD--RWFYVGSNS-E--G---YE---Q----------NAKHSF--GMAFGGG 229 (317)
Q Consensus 173 ~~~kWf~~~DDDTyv~~~nL~~~L~~~d~~--~p~yiG~~~-e--~---~~---~----------~~~~g~--~~~~GGa 229 (317)
.+.+|++++|||+.+..+.|.++++.++.. .-..+|... . . .. . ...... .-...++
T Consensus 72 ~~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 151 (281)
T TIGR01556 72 RGVQGVLLLDQDSRPGNAFLAAQWKLLSAENGQACALGPRFFDRGTSRRLPAIHLDGLLLRQISLDGLTTPQKTSFLISS 151 (281)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHhcCCceEEECCeEEcCCCcccCCceeecccceeeecccccCCceeccEEEcC
Confidence 478999999999999987777777655432 223333211 0 0 00 0 000000 0012357
Q ss_pred cccccHHHHHHHHHhhhhhhhhcccCCcchHHHHHHHHHhCCcce
Q 021089 230 GFAISHSLARVLAGALDSCLMRYAHLYGSDARVFSCLVELGVGLT 274 (317)
Q Consensus 230 G~vlSr~ll~~L~~~~d~C~~~~~~~~~~D~~lg~Cl~~lGV~lt 274 (317)
|.++++++++++.. +++- +. .+.+|..+..=+.+.|.++.
T Consensus 152 g~li~~~~~~~iG~-fde~---~f-i~~~D~e~~~R~~~~G~~i~ 191 (281)
T TIGR01556 152 GCLITREVYQRLGM-MDEE---LF-IDHVDTEWSLRAQNYGIPLY 191 (281)
T ss_pred cceeeHHHHHHhCC-ccHh---hc-ccchHHHHHHHHHHCCCEEE
Confidence 78999999998754 2221 11 12367766444455676544
No 24
>KOG2246 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=91.69 E-value=0.19 Score=49.33 Aligned_cols=43 Identities=33% Similarity=0.409 Sum_probs=31.1
Q ss_pred CCCCCCcEEEE-EecCCCchHHHHHHHHHHhCCCCCeEEEEecC
Q 021089 78 NPLTRRHLLFS-IASSSSSWPRRRSYVRLWYSPNSTRALTFLDR 120 (317)
Q Consensus 78 ~~~~~~~I~f~-I~Ts~~~~~~R~~~i~~ww~~~~~~~~vfsD~ 120 (317)
...+..++++| +.++...+..|-..+.-||.....+....++.
T Consensus 67 ~~~~i~~~~~g~~~~s~~~~l~r~~~v~cwv~t~~~~~~~~~~~ 110 (364)
T KOG2246|consen 67 LTTDILHLVFGIIASSIALWLSRSGRVLCWVLTSPMRHVTRADA 110 (364)
T ss_pred cccchhhhccCCccccchhccCCCceEEEEEEecCcCceeehhh
Confidence 56788899999 77777777667677777777655666666654
No 25
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=91.20 E-value=0.39 Score=42.37 Aligned_cols=105 Identities=23% Similarity=0.284 Sum_probs=57.8
Q ss_pred HHHHHHHhccccCCccEEEEEcCCccccHHHHHHHHccC-CCCCCeEEeecC-CC-----------C---c------ccc
Q 021089 161 VVKEAVDLTDEKAGVRWFVFGDDDTVFFVDNLVKTLSKY-DDDRWFYVGSNS-EG-----------Y---E------QNA 218 (317)
Q Consensus 161 ~l~~~~~~~~~~~~~kWf~~~DDDTyv~~~nL~~~L~~~-d~~~p~yiG~~~-e~-----------~---~------~~~ 218 (317)
.+.+..+. -+.+|++++|||+.+..+-|.++++.+ +++-...-|... .. . . ...
T Consensus 77 a~n~~~~~----~~~d~i~~lD~D~~~~p~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (228)
T PF13641_consen 77 ALNEALAA----ARGDYILFLDDDTVLDPDWLERLLAAFADPGVGAVGGPVFPDNDRNWLTRLQDLFFARWHLRFRSGRR 152 (228)
T ss_dssp HHHHHHHH-------SEEEEE-SSEEE-CHHHHHHHHHHHBSS--EEEEEEEETTCCCEEEE-TT--S-EETTTS-TT-B
T ss_pred HHHHHHHh----cCCCEEEEECCCcEECHHHHHHHHHHHHhCCCCeEeeeEeecCCCCHHHHHHHHHHhhhhhhhhhhhc
Confidence 44455543 348999999999999988888888877 554333333321 00 0 0 001
Q ss_pred cccccccccCccccccHHHHHHHHHhhhhhhhhcccCCcchHHHHHHHHHhCCcceeCC
Q 021089 219 KHSFGMAFGGGGFAISHSLARVLAGALDSCLMRYAHLYGSDARVFSCLVELGVGLTPEP 277 (317)
Q Consensus 219 ~~g~~~~~GGaG~vlSr~ll~~L~~~~d~C~~~~~~~~~~D~~lg~Cl~~lGV~lt~~~ 277 (317)
..+. .+..|+++++.+++++++.. ++. ...++|..++.-+...|.++...|
T Consensus 153 ~~~~-~~~~G~~~~~rr~~~~~~g~-fd~------~~~~eD~~l~~r~~~~G~~~~~~~ 203 (228)
T PF13641_consen 153 ALGV-AFLSGSGMLFRRSALEEVGG-FDP------FILGEDFDLCLRLRAAGWRIVYAP 203 (228)
T ss_dssp -----S-B--TEEEEEHHHHHHH-S---S------SSSSHHHHHHHHHHHTT--EEEEE
T ss_pred ccce-eeccCcEEEEEHHHHHHhCC-CCC------CCcccHHHHHHHHHHCCCcEEEEC
Confidence 1222 22347999999999999864 222 234599999999988888866543
No 26
>cd06532 Glyco_transf_25 Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of glycosyltransferases involved in LOS biosynthesis. The members include the beta(1,4) galactosyltransferases: Lgt2 of Moraxella catarrhalis, LgtB and LgtE of Neisseria gonorrhoeae and Lic2A of Haemophilus influenzae. M. catarrhalis Lgt2 catalyzes the addition of galactose (Gal) to the growing chain of LOS on the cell surface. N. gonorrhoeae LgtB and LgtE link Gal-beta(1,4) to GlcNAc (N-acetylglucosamine) and Glc (glucose), respectively. The genes encoding LgtB and LgtE are two genes of a five gene locus involved in the synthesis of gonococcal LOS. LgtE is believed to perform the first step in LOS biosynthesis.
Probab=90.92 E-value=0.45 Score=39.33 Aligned_cols=51 Identities=22% Similarity=0.370 Sum_probs=41.8
Q ss_pred hhHHHHHHHHHHHHhccccCCccEEEEEcCCccccHHHHHHHHccCCCCCCeEEeecCCCCcccccccccccccCccccc
Q 021089 154 SAVRVARVVKEAVDLTDEKAGVRWFVFGDDDTVFFVDNLVKTLSKYDDDRWFYVGSNSEGYEQNAKHSFGMAFGGGGFAI 233 (317)
Q Consensus 154 ~a~r~~~~l~~~~~~~~~~~~~kWf~~~DDDTyv~~~nL~~~L~~~d~~~p~yiG~~~e~~~~~~~~g~~~~~GGaG~vl 233 (317)
|+..+..+.+.+.+ .+.+|.++.|||..+..+ |.+||++
T Consensus 67 C~lSH~~~w~~~~~-----~~~~~alIlEDDv~~~~~------------------------------------~~~~Y~v 105 (128)
T cd06532 67 CFLSHYKLWQKIVE-----SNLEYALILEDDAILDPD------------------------------------GTAGYLV 105 (128)
T ss_pred HHHHHHHHHHHHHH-----cCCCeEEEEccCcEECCC------------------------------------CceEEEe
Confidence 55566667777765 567999999999998877 6789999
Q ss_pred cHHHHHHHHHhh
Q 021089 234 SHSLARVLAGAL 245 (317)
Q Consensus 234 Sr~ll~~L~~~~ 245 (317)
|+.++++|....
T Consensus 106 s~~~A~~ll~~~ 117 (128)
T cd06532 106 SRKGAKKLLAAL 117 (128)
T ss_pred CHHHHHHHHHhC
Confidence 999999999864
No 27
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=90.89 E-value=0.66 Score=40.15 Aligned_cols=85 Identities=24% Similarity=0.305 Sum_probs=58.1
Q ss_pred CCccEEEEEcCCccccHHHHHHHHccCC-CCCCeEEeecCCCCcccccccccccccCccccccHHHHHHHHHhhhhhhhh
Q 021089 173 AGVRWFVFGDDDTVFFVDNLVKTLSKYD-DDRWFYVGSNSEGYEQNAKHSFGMAFGGGGFAISHSLARVLAGALDSCLMR 251 (317)
Q Consensus 173 ~~~kWf~~~DDDTyv~~~nL~~~L~~~d-~~~p~yiG~~~e~~~~~~~~g~~~~~GGaG~vlSr~ll~~L~~~~d~C~~~ 251 (317)
.+.+|+++.|||+.+..+.|.++++.+. +.-.++.|.... ..+ .++|.++.+.+++++.- .+. .
T Consensus 78 ~~~d~v~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~------~~~-----~~~~~~~~~~~~~~~g~-~~~---~ 142 (202)
T cd04185 78 LGYDWIWLMDDDAIPDPDALEKLLAYADKDNPQFLAPLVLD------PDG-----SFVGVLISRRVVEKIGL-PDK---E 142 (202)
T ss_pred cCCCEEEEeCCCCCcChHHHHHHHHHHhcCCceEecceeEc------CCC-----ceEEEEEeHHHHHHhCC-CCh---h
Confidence 5789999999999999888888887765 333344443321 111 35678999999988742 111 1
Q ss_pred cccCCcchHHHHHHHHHhCCcc
Q 021089 252 YAHLYGSDARVFSCLVELGVGL 273 (317)
Q Consensus 252 ~~~~~~~D~~lg~Cl~~lGV~l 273 (317)
+ ..+++|..+..=+.+.|..+
T Consensus 143 ~-~~~~eD~~~~~r~~~~G~~i 163 (202)
T cd04185 143 F-FIWGDDTEYTLRASKAGPGI 163 (202)
T ss_pred h-hccchHHHHHHHHHHcCCcE
Confidence 1 24568999988888888776
No 28
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=90.53 E-value=9 Score=37.33 Aligned_cols=176 Identities=17% Similarity=0.089 Sum_probs=102.3
Q ss_pred CCcEEEEEecCCCchHHHHHHHHHHhCCCCC--eEEEEecCCCCC----CCCCCCCC-CceeecCCCCCCccCCCCCchh
Q 021089 82 RRHLLFSIASSSSSWPRRRSYVRLWYSPNST--RALTFLDRAADS----SSAGDPSL-PRIVISADTSKFPFTFPKGLRS 154 (317)
Q Consensus 82 ~~~I~f~I~Ts~~~~~~R~~~i~~ww~~~~~--~~~vfsD~~~~~----~~~~~~~l-p~v~i~~d~~~~~y~~~~g~~~ 154 (317)
...+-+.|.+-.+..+.-...++.-.+.+-+ ++.++.|..+++ ..+..... |.+.+.... ....|+..
T Consensus 53 ~p~vsviiP~ynE~~~~~~~~l~s~~~~dyp~~evivv~d~~~d~~~~~~~~~~~~~~~~~~~~~~~-----~~~~gK~~ 127 (439)
T COG1215 53 LPKVSVIIPAYNEEPEVLEETLESLLSQDYPRYEVIVVDDGSTDETYEILEELGAEYGPNFRVIYPE-----KKNGGKAG 127 (439)
T ss_pred CCceEEEEecCCCchhhHHHHHHHHHhCCCCCceEEEECCCCChhHHHHHHHHHhhcCcceEEEecc-----ccCccchH
Confidence 4677777777766554444455555555444 455555644332 11112222 344443100 01123322
Q ss_pred hHHHHHHHHHHHHhccccCCccEEEEEcCCccccHHHHHHHHccCCCCCCe-EEeecC-------CCC-c----------
Q 021089 155 AVRVARVVKEAVDLTDEKAGVRWFVFGDDDTVFFVDNLVKTLSKYDDDRWF-YVGSNS-------EGY-E---------- 215 (317)
Q Consensus 155 a~r~~~~l~~~~~~~~~~~~~kWf~~~DDDTyv~~~nL~~~L~~~d~~~p~-yiG~~~-------e~~-~---------- 215 (317)
+ +...... ...+++++.|.|+....+.|++++..++..... +.|.+. +.. .
T Consensus 128 a------l~~~l~~----~~~d~V~~~DaD~~~~~d~l~~~~~~f~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~ 197 (439)
T COG1215 128 A------LNNGLKR----AKGDVVVILDADTVPEPDALRELVSPFEDPPVGAVVGTPRIRNRPDPSNLLGRIQAIEYLSA 197 (439)
T ss_pred H------HHHHHhh----cCCCEEEEEcCCCCCChhHHHHHHhhhcCCCeeEEeCCceeeecCChhhhcchhcchhhhhh
Confidence 2 2222221 459999999999999999999999998755443 666551 110 0
Q ss_pred ------ccccccccccccCccccccHHHHHHHHHhhhhhhhhcccCCcchHHHHHHHHHhCCcceeCCCC
Q 021089 216 ------QNAKHSFGMAFGGGGFAISHSLARVLAGALDSCLMRYAHLYGSDARVFSCLVELGVGLTPEPGF 279 (317)
Q Consensus 216 ------~~~~~g~~~~~GGaG~vlSr~ll~~L~~~~d~C~~~~~~~~~~D~~lg~Cl~~lGV~lt~~~~f 279 (317)
.....|.....+|++.++-+++++++.... +....||..++.-+...|.+....+.-
T Consensus 198 ~~~~~~~~~~~g~~~~~~G~~~~~rr~aL~~~g~~~-------~~~i~ED~~lt~~l~~~G~~~~~~~~~ 260 (439)
T COG1215 198 FYFRLRAASKGGLISFLSGSSSAFRRSALEEVGGWL-------EDTITEDADLTLRLHLRGYRVVYVPEA 260 (439)
T ss_pred HHHhhhhhhhcCCeEEEcceeeeEEHHHHHHhCCCC-------CCceeccHHHHHHHHHCCCeEEEeecc
Confidence 011223234567899999999999987322 223469999999999888776654443
No 29
>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2
Probab=90.06 E-value=0.82 Score=39.44 Aligned_cols=95 Identities=19% Similarity=0.167 Sum_probs=59.5
Q ss_pred EEEEEcCCccccHHHHHHHHccCC-CCCCeEEeecC----CCC---cc--------------cccccccccccCcccccc
Q 021089 177 WFVFGDDDTVFFVDNLVKTLSKYD-DDRWFYVGSNS----EGY---EQ--------------NAKHSFGMAFGGGGFAIS 234 (317)
Q Consensus 177 Wf~~~DDDTyv~~~nL~~~L~~~d-~~~p~yiG~~~----e~~---~~--------------~~~~g~~~~~GGaG~vlS 234 (317)
|+++.|+||-+..+-|.+++..++ |+-...-|... .+. .+ ....+.....-|+|.+++
T Consensus 1 ~v~~~DaDt~~~~d~l~~~~~~~~~~~~~~vq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~r 80 (193)
T PF13632_consen 1 YVLFLDADTRLPPDFLERLVAALEDPKVDAVQGPIIFRNRGSLLTRLQDFEYAISHGLSRLSQSSLGRPLFLSGSGMLFR 80 (193)
T ss_pred CEEEEcCCCCCChHHHHHHHHHHhCCCceEEEccEEecCCCChhheeehhhhhhhhhhhHHHHHhcCCCccccCcceeee
Confidence 899999999999998888887776 22222222211 110 00 011222223458999999
Q ss_pred HHHHHHHHHhhhhhhhhcccCCcchHHHHHHHHHhCCcceeCC
Q 021089 235 HSLARVLAGALDSCLMRYAHLYGSDARVFSCLVELGVGLTPEP 277 (317)
Q Consensus 235 r~ll~~L~~~~d~C~~~~~~~~~~D~~lg~Cl~~lGV~lt~~~ 277 (317)
+++++++..-.+ ....+||..++.=+.+.|.++...|
T Consensus 81 ~~~l~~vg~~~~------~~~~~ED~~l~~~l~~~G~~~~~~~ 117 (193)
T PF13632_consen 81 REALREVGGFDD------PFSIGEDMDLGFRLRRAGYRIVYVP 117 (193)
T ss_pred HHHHHHhCcccc------cccccchHHHHHHHHHCCCEEEEec
Confidence 999998753210 1245699999988888887765543
No 30
>PF05679 CHGN: Chondroitin N-acetylgalactosaminyltransferase; InterPro: IPR008428 This family represents Chondroitin N-acetylgalactosaminyltransferase. Proteins have a type II transmembrane topology. The enzyme is involved in the biosynthetic initiation and elongation of chondroitin sulphate and is the key enzyme responsible for the selective chain assembly of chondroitin/dermatan sulphate on the linkage region tetrasaccharide common to various proteoglycans containing chondroitin/dermatan sulphate or heparin/heparan sulphate chains. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0032580 Golgi cisterna membrane
Probab=89.42 E-value=0.37 Score=49.29 Aligned_cols=33 Identities=24% Similarity=0.291 Sum_probs=25.0
Q ss_pred hhhhhhhhcccCCcchHHHHHHHHH-hCCcceeCC
Q 021089 244 ALDSCLMRYAHLYGSDARVFSCLVE-LGVGLTPEP 277 (317)
Q Consensus 244 ~~d~C~~~~~~~~~~D~~lg~Cl~~-lGV~lt~~~ 277 (317)
++++|.+... ...+|+.||+|+.+ +||+|+.+.
T Consensus 1 hl~~C~~~~~-s~~~Dv~lGRCI~~~~gi~Ct~~~ 34 (499)
T PF05679_consen 1 HLDWCLKNIY-SNHEDVELGRCIKKFTGISCTWSY 34 (499)
T ss_pred ChhHHhhhcC-CCCchhHHHHHHHHhcCCCeeecc
Confidence 4678986432 23489999999986 899998763
No 31
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=89.36 E-value=0.74 Score=40.49 Aligned_cols=95 Identities=17% Similarity=0.111 Sum_probs=60.4
Q ss_pred CCccEEEEEcCCccccHHHHHHHHccCCCCCC-eEEeec-C----CCC---cc--------------c--cccccccccc
Q 021089 173 AGVRWFVFGDDDTVFFVDNLVKTLSKYDDDRW-FYVGSN-S----EGY---EQ--------------N--AKHSFGMAFG 227 (317)
Q Consensus 173 ~~~kWf~~~DDDTyv~~~nL~~~L~~~d~~~p-~yiG~~-~----e~~---~~--------------~--~~~g~~~~~G 227 (317)
.+.+|++++|+|+++..+.|.++++.++.+.. -.++.. . ... .. . ...+..++ .
T Consensus 83 a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 161 (234)
T cd06421 83 TTGDFVAILDADHVPTPDFLRRTLGYFLDDPKVALVQTPQFFYNPDPFDWLADGAPNEQELFYGVIQPGRDRWGAAFC-C 161 (234)
T ss_pred CCCCEEEEEccccCcCccHHHHHHHHHhcCCCeEEEecceEEecCCcchhHHHHHHHHHHHHHHHHHHHHhhcCCcee-c
Confidence 46899999999999999888888887764332 223221 0 000 00 0 00112223 4
Q ss_pred CccccccHHHHHHHHHhhhhhhhhcccCCcchHHHHHHHHHhCCccee
Q 021089 228 GGGFAISHSLARVLAGALDSCLMRYAHLYGSDARVFSCLVELGVGLTP 275 (317)
Q Consensus 228 GaG~vlSr~ll~~L~~~~d~C~~~~~~~~~~D~~lg~Cl~~lGV~lt~ 275 (317)
|+|.++++.+++++... ++ ..+.+|..++.=+...|..+..
T Consensus 162 g~~~~~r~~~~~~ig~~-~~------~~~~eD~~l~~r~~~~g~~i~~ 202 (234)
T cd06421 162 GSGAVVRREALDEIGGF-PT------DSVTEDLATSLRLHAKGWRSVY 202 (234)
T ss_pred CceeeEeHHHHHHhCCC-Cc------cceeccHHHHHHHHHcCceEEE
Confidence 68899999999987542 21 2346899999888787776554
No 32
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=88.30 E-value=3.5 Score=35.96 Aligned_cols=101 Identities=17% Similarity=0.109 Sum_probs=65.3
Q ss_pred CccEEEEEcCCccccHHHHHHHHcc-CCCCCCeEEeecCCCCcc-----c---------------ccccccccc-cCccc
Q 021089 174 GVRWFVFGDDDTVFFVDNLVKTLSK-YDDDRWFYVGSNSEGYEQ-----N---------------AKHSFGMAF-GGGGF 231 (317)
Q Consensus 174 ~~kWf~~~DDDTyv~~~nL~~~L~~-~d~~~p~yiG~~~e~~~~-----~---------------~~~g~~~~~-GGaG~ 231 (317)
..+|++++|+|....++.|.++++. .+....+.+|........ . ...+..+.. ..+..
T Consensus 82 ~gd~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~g~~ 161 (211)
T cd04188 82 RGDYILFADADLATPFEELEKLEEALKTSGYDIAIGSRAHLASAAVVKRSWLRNLLGRGFNFLVRLLLGLGIKDTQCGFK 161 (211)
T ss_pred cCCEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEEEeeccCCcccccccHHHHHHHHHHHHHHHHHcCCCCcccccCce
Confidence 3599999999999999999988887 455667888876422100 0 001111111 23447
Q ss_pred cccHHHHHHHHHhhhhhhhhcccCCcchHHHHHHHHHhCCcceeCCCCC
Q 021089 232 AISHSLARVLAGALDSCLMRYAHLYGSDARVFSCLVELGVGLTPEPGFH 280 (317)
Q Consensus 232 vlSr~ll~~L~~~~d~C~~~~~~~~~~D~~lg~Cl~~lGV~lt~~~~f~ 280 (317)
++++++++++..... ...|..|..+..-+.+.|.++...|--+
T Consensus 162 ~~~r~~~~~~~~~~~------~~~~~~d~el~~r~~~~g~~~~~vpi~~ 204 (211)
T cd04188 162 LFTRDAARRLFPRLH------LERWAFDVELLVLARRLGYPIEEVPVRW 204 (211)
T ss_pred eEcHHHHHHHHhhhh------ccceEeeHHHHHHHHHcCCeEEEcCcce
Confidence 899999988764321 1245568888777778888877766433
No 33
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=88.30 E-value=1.5 Score=38.97 Aligned_cols=98 Identities=16% Similarity=0.030 Sum_probs=58.0
Q ss_pred CCccEEEEEcCCccccHHHHHHHHccCCCCCCeEEeecC------CCCc---c------------c--ccccccccccCc
Q 021089 173 AGVRWFVFGDDDTVFFVDNLVKTLSKYDDDRWFYVGSNS------EGYE---Q------------N--AKHSFGMAFGGG 229 (317)
Q Consensus 173 ~~~kWf~~~DDDTyv~~~nL~~~L~~~d~~~p~yiG~~~------e~~~---~------------~--~~~g~~~~~GGa 229 (317)
.+.+|++++|+|+.+..+-|.+++..+...+--.++... .... + . ...+..+...|+
T Consensus 86 a~~~~i~~~DaD~~~~~~~l~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 165 (232)
T cd06437 86 AKGEYVAIFDADFVPPPDFLQKTPPYFADPKLGFVQTRWGHINANYSLLTRVQAMSLDYHFTIEQVARSSTGLFFNFNGT 165 (232)
T ss_pred CCCCEEEEEcCCCCCChHHHHHhhhhhcCCCeEEEecceeeEcCCCchhhHhhhhhHHhhhhHhHhhHhhcCCeEEeccc
Confidence 578999999999999988888865555332222232211 0000 0 0 001111123466
Q ss_pred cccccHHHHHHHHHhhhhhhhhcccCCcchHHHHHHHHHhCCcceeCC
Q 021089 230 GFAISHSLARVLAGALDSCLMRYAHLYGSDARVFSCLVELGVGLTPEP 277 (317)
Q Consensus 230 G~vlSr~ll~~L~~~~d~C~~~~~~~~~~D~~lg~Cl~~lGV~lt~~~ 277 (317)
+.++.+++++++.. ++. ..+.+|..+...+...|.++...|
T Consensus 166 ~~~~rr~~~~~vgg-~~~------~~~~ED~~l~~rl~~~G~~~~~~~ 206 (232)
T cd06437 166 AGVWRKECIEDAGG-WNH------DTLTEDLDLSYRAQLKGWKFVYLD 206 (232)
T ss_pred hhhhhHHHHHHhCC-CCC------CcchhhHHHHHHHHHCCCeEEEec
Confidence 67788888877643 222 124699999999988887765443
No 34
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=88.29 E-value=1.4 Score=38.32 Aligned_cols=94 Identities=16% Similarity=0.105 Sum_probs=57.5
Q ss_pred CCccEEEEEcCCccccHHHHHHHHccCCC-CCCeEEeecCCCC-c------c-------------cccccccccccCccc
Q 021089 173 AGVRWFVFGDDDTVFFVDNLVKTLSKYDD-DRWFYVGSNSEGY-E------Q-------------NAKHSFGMAFGGGGF 231 (317)
Q Consensus 173 ~~~kWf~~~DDDTyv~~~nL~~~L~~~d~-~~p~yiG~~~e~~-~------~-------------~~~~g~~~~~GGaG~ 231 (317)
...+|++++|+|+.+..+-|.+++..+.. ....+.|...... . . ....+..+...|+++
T Consensus 81 ~~~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 160 (229)
T cd04192 81 AKGDWIVTTDADCVVPSNWLLTFVAFIQKEQIGLVAGPVIYFKGKSLLAKFQRLDWLSLLGLIAGSFGLGKPFMCNGANM 160 (229)
T ss_pred hcCCEEEEECCCcccCHHHHHHHHHHhhcCCCcEEeeeeeecCCccHHHHHHHHHHHHHHHHHhhHHHhcCccccccceE
Confidence 46899999999999988888888876543 3445666542110 0 0 011222334457889
Q ss_pred cccHHHHHHHHHhhhhhhhhcccCCcchHHHHHHHHHhCC
Q 021089 232 AISHSLARVLAGALDSCLMRYAHLYGSDARVFSCLVELGV 271 (317)
Q Consensus 232 vlSr~ll~~L~~~~d~C~~~~~~~~~~D~~lg~Cl~~lGV 271 (317)
++++++++++..- +. ......+|..++.-+...|.
T Consensus 161 ~~rr~~~~~~ggf-~~----~~~~~~eD~~~~~~~~~~g~ 195 (229)
T cd04192 161 AYRKEAFFEVGGF-EG----NDHIASGDDELLLAKVASKY 195 (229)
T ss_pred EEEHHHHHHhcCC-cc----ccccccCCHHHHHHHHHhCC
Confidence 9999999997542 11 01123467777665555555
No 35
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=88.14 E-value=1.3 Score=39.90 Aligned_cols=99 Identities=19% Similarity=0.149 Sum_probs=63.0
Q ss_pred CCccEEEEEcCCccccHHHHHHHHccCCCC-CC-eEEeecCCCCc--c-------------------c--cccccccccc
Q 021089 173 AGVRWFVFGDDDTVFFVDNLVKTLSKYDDD-RW-FYVGSNSEGYE--Q-------------------N--AKHSFGMAFG 227 (317)
Q Consensus 173 ~~~kWf~~~DDDTyv~~~nL~~~L~~~d~~-~p-~yiG~~~e~~~--~-------------------~--~~~g~~~~~G 227 (317)
...+|++++|+|+.+..+.|.++++.+... .. .++|....... + . ...+...+.+
T Consensus 83 a~gd~i~~~DaD~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (241)
T cd06427 83 ARGEYVVIYDAEDAPDPDQLKKAVAAFARLDDKLACVQAPLNYYNARENWLTRMFALEYAAWFDYLLPGLARLGLPIPLG 162 (241)
T ss_pred cCCCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEeCceEeeCCCccHHHHHHHHHHHHHHHHHHHHHHhcCCeeecC
Confidence 356999999999999999998888877532 22 34433210000 0 0 0112223457
Q ss_pred CccccccHHHHHHHHHhhhhhhhhcccCCcchHHHHHHHHHhCCcceeCCC
Q 021089 228 GGGFAISHSLARVLAGALDSCLMRYAHLYGSDARVFSCLVELGVGLTPEPG 278 (317)
Q Consensus 228 GaG~vlSr~ll~~L~~~~d~C~~~~~~~~~~D~~lg~Cl~~lGV~lt~~~~ 278 (317)
|++.++++++++++... +. ..+.+|..++.=+...|..+...+.
T Consensus 163 g~~~~~rr~~~~~vgg~-~~------~~~~eD~~l~~rl~~~G~r~~~~~~ 206 (241)
T cd06427 163 GTSNHFRTDVLRELGGW-DP------FNVTEDADLGLRLARAGYRTGVLNS 206 (241)
T ss_pred CchHHhhHHHHHHcCCC-Cc------ccchhhHHHHHHHHHCCceEEEecc
Confidence 88899999999887542 11 1245899988888777877665443
No 36
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=87.24 E-value=1 Score=34.77 Aligned_cols=85 Identities=19% Similarity=0.302 Sum_probs=43.3
Q ss_pred HHHHHHhCC----CCCeEEEEecCCCCCCCCCCCCCCceeecCCCCCCccCCCCCchhhHHHHHHHHHHHHhccccCCcc
Q 021089 101 SYVRLWYSP----NSTRALTFLDRAADSSSAGDPSLPRIVISADTSKFPFTFPKGLRSAVRVARVVKEAVDLTDEKAGVR 176 (317)
Q Consensus 101 ~~i~~ww~~----~~~~~~vfsD~~~~~~~~~~~~lp~v~i~~d~~~~~y~~~~g~~~a~r~~~~l~~~~~~~~~~~~~k 176 (317)
+.+..|+.. ...+++|+.+..++...++-..++.+.+..... .+ +...+-......+.+.. .+.+
T Consensus 5 ~~L~~wl~~~~~lG~d~i~i~d~~s~D~t~~~l~~~~~v~i~~~~~--~~------~~~~~~~~~~~~~~~~~---~~~d 73 (97)
T PF13704_consen 5 DYLPEWLAHHLALGVDHIYIYDDGSTDGTREILRALPGVGIIRWVD--PY------RDERRQRAWRNALIERA---FDAD 73 (97)
T ss_pred HHHHHHHHHHHHcCCCEEEEEECCCCccHHHHHHhCCCcEEEEeCC--Cc------cchHHHHHHHHHHHHhC---CCCC
Confidence 345555443 257888887765443222223445555432111 11 00011111222333322 5799
Q ss_pred EEEEEcCCccccHHH----HHHHH
Q 021089 177 WFVFGDDDTVFFVDN----LVKTL 196 (317)
Q Consensus 177 Wf~~~DDDTyv~~~n----L~~~L 196 (317)
|.+++|-|-|+..+. |.++|
T Consensus 74 Wvl~~D~DEfl~~~~~~~~l~~~L 97 (97)
T PF13704_consen 74 WVLFLDADEFLVPPPGRRSLRDFL 97 (97)
T ss_pred EEEEEeeeEEEecCCCCCCHHHhC
Confidence 999999999998544 55543
No 37
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=86.94 E-value=1.3 Score=38.00 Aligned_cols=95 Identities=16% Similarity=0.182 Sum_probs=56.8
Q ss_pred CCccEEEEEcCCccccHHHHHHHHccCC--CCCCeEEeecCC----CC--c-c-----c------ccccccccccCcccc
Q 021089 173 AGVRWFVFGDDDTVFFVDNLVKTLSKYD--DDRWFYVGSNSE----GY--E-Q-----N------AKHSFGMAFGGGGFA 232 (317)
Q Consensus 173 ~~~kWf~~~DDDTyv~~~nL~~~L~~~d--~~~p~yiG~~~e----~~--~-~-----~------~~~g~~~~~GGaG~v 232 (317)
.+.+|++++|+|.++..+.|.+++..+. ++-.++.|.... +. . . . .... -...|++++
T Consensus 79 a~gd~i~~lD~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 156 (201)
T cd04195 79 CTYDWVARMDTDDISLPDRFEKQLDFIEKNPEIDIVGGGVLEFDSDGNDIGKRRLPTSHDDILKFARRR--SPFNHPTVM 156 (201)
T ss_pred cCCCEEEEeCCccccCcHHHHHHHHHHHhCCCeEEEcccEEEECCCCCeeccccCCCCHHHHHHHhccC--CCCCChHHh
Confidence 4689999999999999888888887663 333344443211 00 0 0 0 0011 122355677
Q ss_pred ccHHHHHHHHHhhhhhhhhcccCCcchHHHHHHHHHhCCcceeC
Q 021089 233 ISHSLARVLAGALDSCLMRYAHLYGSDARVFSCLVELGVGLTPE 276 (317)
Q Consensus 233 lSr~ll~~L~~~~d~C~~~~~~~~~~D~~lg~Cl~~lGV~lt~~ 276 (317)
+.+++++++... +. ....+|..+...+...|.++...
T Consensus 157 ~rr~~~~~~g~~-~~------~~~~eD~~~~~r~~~~g~~~~~~ 193 (201)
T cd04195 157 FRKSKVLAVGGY-QD------LPLVEDYALWARMLANGARFANL 193 (201)
T ss_pred hhHHHHHHcCCc-CC------CCCchHHHHHHHHHHcCCceecc
Confidence 777777665321 11 14568999999988777665543
No 38
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=86.90 E-value=1 Score=38.58 Aligned_cols=68 Identities=12% Similarity=0.128 Sum_probs=45.7
Q ss_pred CCccEEEEEcCCccccHHHHHHHHccCCCCCCeEEeecC----CCCc----c--------------cccccccccccCcc
Q 021089 173 AGVRWFVFGDDDTVFFVDNLVKTLSKYDDDRWFYVGSNS----EGYE----Q--------------NAKHSFGMAFGGGG 230 (317)
Q Consensus 173 ~~~kWf~~~DDDTyv~~~nL~~~L~~~d~~~p~yiG~~~----e~~~----~--------------~~~~g~~~~~GGaG 230 (317)
.+.+|+++.|.|+.+.++.|.+++..+........|... +... . ....+......|+|
T Consensus 80 ~~~d~v~~~DaD~~~~p~~l~~l~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 159 (183)
T cd06438 80 DDPDAVVVFDADNLVDPNALEELNARFAAGARVVQAYYNSKNPDDSWITRLYAFAFLVFNRLRPLGRSNLGLSCQLGGTG 159 (183)
T ss_pred CCCCEEEEEcCCCCCChhHHHHHHHHHhhCCCeeEEEEeeeCCccCHHHHHHHHHHHHHHHHHHHHHHHcCCCeeecCch
Confidence 579999999999999999998888887655556566532 1100 0 00112223456888
Q ss_pred ccccHHHHHH
Q 021089 231 FAISHSLARV 240 (317)
Q Consensus 231 ~vlSr~ll~~ 240 (317)
++++++++++
T Consensus 160 ~~~rr~~l~~ 169 (183)
T cd06438 160 MCFPWAVLRQ 169 (183)
T ss_pred hhhHHHHHHh
Confidence 8888888887
No 39
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=84.07 E-value=41 Score=32.31 Aligned_cols=99 Identities=15% Similarity=0.169 Sum_probs=62.0
Q ss_pred CccEEEEEcCCccccHHHHHHHHccC----CCCCCeEEeecCCCC-c-----c---------------cccccccccccC
Q 021089 174 GVRWFVFGDDDTVFFVDNLVKTLSKY----DDDRWFYVGSNSEGY-E-----Q---------------NAKHSFGMAFGG 228 (317)
Q Consensus 174 ~~kWf~~~DDDTyv~~~nL~~~L~~~----d~~~p~yiG~~~e~~-~-----~---------------~~~~g~~~~~GG 228 (317)
..+|++++|.|+...++.+.+++..+ ++.-.+.+|...... . . ....+..+....
T Consensus 162 ~gd~I~~~DaD~~~~~~~l~~l~~~l~~~~~~~~dvV~GsR~~~~~~~~~~~~~~~r~~~~~~~~~l~~~~~~~~i~D~~ 241 (333)
T PTZ00260 162 RGKYILMVDADGATDIDDFDKLEDIMLKIEQNGLGIVFGSRNHLVDSDVVAKRKWYRNILMYGFHFIVNTICGTNLKDTQ 241 (333)
T ss_pred cCCEEEEEeCCCCCCHHHHHHHHHHHHHhhccCCceEEeeccccccCcccccCcHHHHHHHHHHHHHHHHHcCCCcccCC
Confidence 46899999999998877766666544 345568899864210 0 0 001122334445
Q ss_pred ccc-cccHHHHHHHHHhhhhhhhhcccCCcchHHHHHHHHHhCCcceeCCC
Q 021089 229 GGF-AISHSLARVLAGALDSCLMRYAHLYGSDARVFSCLVELGVGLTPEPG 278 (317)
Q Consensus 229 aG~-vlSr~ll~~L~~~~d~C~~~~~~~~~~D~~lg~Cl~~lGV~lt~~~~ 278 (317)
.|+ ++++.+++.+.+... ...|.-|..+-..+...|.++...|-
T Consensus 242 ~Gfk~~~r~~~~~i~~~~~------~~~~~fd~Ell~~a~~~g~~I~EvPv 286 (333)
T PTZ00260 242 CGFKLFTRETARIIFPSLH------LERWAFDIEIVMIAQKLNLPIAEVPV 286 (333)
T ss_pred CCeEEEeHHHHHHHhhhcc------ccCccchHHHHHHHHHcCCCEEEEce
Confidence 564 889999998865311 12344577777777778887776653
No 40
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=83.77 E-value=2 Score=37.36 Aligned_cols=67 Identities=15% Similarity=-0.009 Sum_probs=42.5
Q ss_pred CccEEEEEcCCccccHHHHHHHHccCC-CCCCeEEeecC---CCC-c----------------cc--ccccccccccCcc
Q 021089 174 GVRWFVFGDDDTVFFVDNLVKTLSKYD-DDRWFYVGSNS---EGY-E----------------QN--AKHSFGMAFGGGG 230 (317)
Q Consensus 174 ~~kWf~~~DDDTyv~~~nL~~~L~~~d-~~~p~yiG~~~---e~~-~----------------~~--~~~g~~~~~GGaG 230 (317)
+.+|++++|.|+.+.++.|.+++..+. |.-...-|... ... . +. ...+ ..+.||.|
T Consensus 89 ~~d~v~~~DaD~~~~~~~l~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~-~~~~~G~~ 167 (191)
T cd06436 89 ERVIIAVIDADGRLDPNALEAVAPYFSDPRVAGTQSRVRMYNRHKNLLTILQDLEFFIIIAATQSLRALTG-TVGLGGNG 167 (191)
T ss_pred CccEEEEECCCCCcCHhHHHHHHHhhcCCceEEEeeeEEEecCCCCHHHHHHHHHHHHHHHHHHHHHHhcC-cEEECCee
Confidence 458999999999999888888666554 32122222210 000 0 00 1123 24569999
Q ss_pred ccccHHHHHHH
Q 021089 231 FAISHSLARVL 241 (317)
Q Consensus 231 ~vlSr~ll~~L 241 (317)
.++++++++++
T Consensus 168 ~~~r~~~l~~v 178 (191)
T cd06436 168 QFMRLSALDGL 178 (191)
T ss_pred EEEeHHHHHHh
Confidence 99999999998
No 41
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=83.55 E-value=4.1 Score=34.21 Aligned_cols=93 Identities=17% Similarity=0.229 Sum_probs=58.5
Q ss_pred CCccEEEEEcCCccccHHHHHHHHccCCCCCCeEEeecCCCCcccccccccccccCccccccHHHHHHHHHhhhhhhhhc
Q 021089 173 AGVRWFVFGDDDTVFFVDNLVKTLSKYDDDRWFYVGSNSEGYEQNAKHSFGMAFGGGGFAISHSLARVLAGALDSCLMRY 252 (317)
Q Consensus 173 ~~~kWf~~~DDDTyv~~~nL~~~L~~~d~~~p~yiG~~~e~~~~~~~~g~~~~~GGaG~vlSr~ll~~L~~~~d~C~~~~ 252 (317)
...+|+++.|+|+.+..+.|.++++..++. ....|........ ... ....|+++++.+..+.++.. ++++.
T Consensus 78 a~g~~i~~lD~D~~~~~~~l~~~~~~~~~~-~~v~g~~~~~~~~-~~~---~~~~~~~~~~~r~~~~~~gg-f~~~~--- 148 (182)
T cd06420 78 AKGDYLIFIDGDCIPHPDFIADHIELAEPG-VFLSGSRVLLNEK-LTE---RGIRGCNMSFWKKDLLAVNG-FDEEF--- 148 (182)
T ss_pred hcCCEEEEEcCCcccCHHHHHHHHHHhCCC-cEEecceeecccc-cce---eEeccceEEEEHHHHHHhCC-CCccc---
Confidence 467999999999999888888888777443 3444554321111 111 23446778888888885443 33321
Q ss_pred ccCCcchHHHHHHHHHhCCcce
Q 021089 253 AHLYGSDARVFSCLVELGVGLT 274 (317)
Q Consensus 253 ~~~~~~D~~lg~Cl~~lGV~lt 274 (317)
.....+|..++.=+.+.|+...
T Consensus 149 ~~~~~eD~~l~~r~~~~g~~~~ 170 (182)
T cd06420 149 TGWGGEDSELVARLLNSGIKFR 170 (182)
T ss_pred ccCCcchHHHHHHHHHcCCcEE
Confidence 1112489999888888885543
No 42
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=83.46 E-value=4.6 Score=35.56 Aligned_cols=99 Identities=13% Similarity=0.054 Sum_probs=57.7
Q ss_pred CCccEEEEEcCCccccHHHHHHHHccCC-CCCCeEEeecCC---CCc------------c-------cccccccccccCc
Q 021089 173 AGVRWFVFGDDDTVFFVDNLVKTLSKYD-DDRWFYVGSNSE---GYE------------Q-------NAKHSFGMAFGGG 229 (317)
Q Consensus 173 ~~~kWf~~~DDDTyv~~~nL~~~L~~~d-~~~p~yiG~~~e---~~~------------~-------~~~~g~~~~~GGa 229 (317)
.+.+|++++|||+.+...-|.++++.+. +......|.... ... . .......++..|+
T Consensus 80 a~~d~v~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (249)
T cd02525 80 SRGDIIIRVDAHAVYPKDYILELVEALKRTGADNVGGPMETIGESKFQKAIAVAQSSPLGSGGSAYRGGAVKIGYVDTVH 159 (249)
T ss_pred hCCCEEEEECCCccCCHHHHHHHHHHHhcCCCCEEecceecCCCChHHHHHHHHhhchhccCCccccccccccccccccc
Confidence 3689999999999998888888886553 333334343210 000 0 0000001234567
Q ss_pred cccccHHHHHHHHHhhhhhhhhcccCCcchHHHHHHHHHhCCcceeCC
Q 021089 230 GFAISHSLARVLAGALDSCLMRYAHLYGSDARVFSCLVELGVGLTPEP 277 (317)
Q Consensus 230 G~vlSr~ll~~L~~~~d~C~~~~~~~~~~D~~lg~Cl~~lGV~lt~~~ 277 (317)
+.++++.+++++.. +++. + ...+|..++.=+.+.|..+...|
T Consensus 160 ~~~~~~~~~~~~g~-~~~~---~--~~~eD~~l~~r~~~~G~~~~~~~ 201 (249)
T cd02525 160 HGAYRREVFEKVGG-FDES---L--VRNEDAELNYRLRKAGYKIWLSP 201 (249)
T ss_pred cceEEHHHHHHhCC-CCcc---c--CccchhHHHHHHHHcCcEEEEcC
Confidence 78889999888643 2222 1 23488888766667777665443
No 43
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=82.31 E-value=7.4 Score=33.86 Aligned_cols=97 Identities=14% Similarity=0.060 Sum_probs=56.3
Q ss_pred CccEEEEEcCCccccHHHHHHHHcc-CCCCCCeEEeecCCCCc--c------------------c-ccccccccccCccc
Q 021089 174 GVRWFVFGDDDTVFFVDNLVKTLSK-YDDDRWFYVGSNSEGYE--Q------------------N-AKHSFGMAFGGGGF 231 (317)
Q Consensus 174 ~~kWf~~~DDDTyv~~~nL~~~L~~-~d~~~p~yiG~~~e~~~--~------------------~-~~~g~~~~~GGaG~ 231 (317)
..+|++++|+|..+..+.|.+++.. .++...+..|....... . . ...+...+ .|+.+
T Consensus 78 ~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 156 (224)
T cd06442 78 RGDVIVVMDADLSHPPEYIPELLEAQLEGGADLVIGSRYVEGGGVEGWGLKRKLISRGANLLARLLLGRKVSDP-TSGFR 156 (224)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCEEEEeeeecCCccCCCcHHHHHHHHHHHHHHHHHcCCCCCCC-CCccc
Confidence 3589999999999998888888887 45555666775421100 0 0 01121122 24556
Q ss_pred cccHHHHHHHHHhhhhhhhhcccCCcchHHHHHHHHHhCCcceeCC
Q 021089 232 AISHSLARVLAGALDSCLMRYAHLYGSDARVFSCLVELGVGLTPEP 277 (317)
Q Consensus 232 vlSr~ll~~L~~~~d~C~~~~~~~~~~D~~lg~Cl~~lGV~lt~~~ 277 (317)
++++++++++....+ ...+..|..+..-+.+.|..+...|
T Consensus 157 ~~~r~~~~~ig~~~~------~~~~~~~~~l~~~~~~~g~~i~~~p 196 (224)
T cd06442 157 AYRREVLEKLIDSLV------SKGYKFQLELLVRARRLGYRIVEVP 196 (224)
T ss_pred hhhHHHHHHHhhhcc------CCCcEEeHHHHHHHHHcCCeEEEeC
Confidence 889999999872111 1233345544444456676655443
No 44
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=81.47 E-value=3.9 Score=36.53 Aligned_cols=36 Identities=19% Similarity=0.192 Sum_probs=27.2
Q ss_pred CccEEEEEcCCccccHHHHHHHHccCCCCC-CeEEee
Q 021089 174 GVRWFVFGDDDTVFFVDNLVKTLSKYDDDR-WFYVGS 209 (317)
Q Consensus 174 ~~kWf~~~DDDTyv~~~nL~~~L~~~d~~~-p~yiG~ 209 (317)
..+|++++|+|+.+..+-|.++++.+...+ .+..|.
T Consensus 109 ~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~ 145 (251)
T cd06439 109 TGEIVVFTDANALLDPDALRLLVRHFADPSVGAVSGE 145 (251)
T ss_pred CCCEEEEEccccCcCHHHHHHHHHHhcCCCccEEEeE
Confidence 359999999999999888888888875333 344443
No 45
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=81.35 E-value=8.1 Score=33.10 Aligned_cols=92 Identities=21% Similarity=0.218 Sum_probs=55.1
Q ss_pred CCccEEEEEcCCccccHHHHHHHHcc-CCCCCCeEEeecC----CC-C--c--cccccc-----------ccccccCccc
Q 021089 173 AGVRWFVFGDDDTVFFVDNLVKTLSK-YDDDRWFYVGSNS----EG-Y--E--QNAKHS-----------FGMAFGGGGF 231 (317)
Q Consensus 173 ~~~kWf~~~DDDTyv~~~nL~~~L~~-~d~~~p~yiG~~~----e~-~--~--~~~~~g-----------~~~~~GGaG~ 231 (317)
.+.+|+++.|+|..+.++.|.++++. .......+++... +. . . ...... ......|+++
T Consensus 78 ~~g~~v~~ld~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (214)
T cd04196 78 ADGDYVFFCDQDDIWLPDKLERLLKAFLKDDKPLLVYSDLELVDENGNPIGESFFEYQKIKPGTSFNNLLFQNVVTGCTM 157 (214)
T ss_pred CCCCEEEEECCCcccChhHHHHHHHHHhcCCCceEEecCcEEECCCCCCcccccccccccCCccCHHHHHHhCccCCcee
Confidence 57999999999999998888888876 3333333444321 00 0 0 000000 0113357889
Q ss_pred cccHHHHHHHHHhhhhhhhhcccCCcchHHHHHHHHHhC
Q 021089 232 AISHSLARVLAGALDSCLMRYAHLYGSDARVFSCLVELG 270 (317)
Q Consensus 232 vlSr~ll~~L~~~~d~C~~~~~~~~~~D~~lg~Cl~~lG 270 (317)
++.+++++++....+. ..+.+|..+...+...|
T Consensus 158 ~~r~~~~~~~~~~~~~------~~~~~D~~~~~~~~~~~ 190 (214)
T cd04196 158 AFNRELLELALPFPDA------DVIMHDWWLALLASAFG 190 (214)
T ss_pred eEEHHHHHhhcccccc------ccccchHHHHHHHHHcC
Confidence 9999999887653111 12457888877776643
No 46
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=81.13 E-value=9.1 Score=34.40 Aligned_cols=99 Identities=14% Similarity=-0.004 Sum_probs=59.2
Q ss_pred CCccEEEEEcCCccccHHHHHHHHccCC-CCCCeEEeecCCCCc------c---c------------ccccccccccCcc
Q 021089 173 AGVRWFVFGDDDTVFFVDNLVKTLSKYD-DDRWFYVGSNSEGYE------Q---N------------AKHSFGMAFGGGG 230 (317)
Q Consensus 173 ~~~kWf~~~DDDTyv~~~nL~~~L~~~d-~~~p~yiG~~~e~~~------~---~------------~~~g~~~~~GGaG 230 (317)
...+|+++.|+|..+.++.|.+++..+. ..-.+..|....... . . ...+... ..|+-
T Consensus 92 a~g~~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~d-~~g~~ 170 (243)
T PLN02726 92 ASGDFVVIMDADLSHHPKYLPSFIKKQRETGADIVTGTRYVKGGGVHGWDLRRKLTSRGANVLAQTLLWPGVSD-LTGSF 170 (243)
T ss_pred cCCCEEEEEcCCCCCCHHHHHHHHHHHHhcCCcEEEEccccCCCCcCCccHHHHHHHHHHHHHHHHHhCCCCCc-CCCcc
Confidence 3578999999999999888888887663 345677776431110 0 0 0001111 22344
Q ss_pred ccccHHHHHHHHHhhhhhhhhcccCCcchHHHHHHHHHhCCcceeCCC
Q 021089 231 FAISHSLARVLAGALDSCLMRYAHLYGSDARVFSCLVELGVGLTPEPG 278 (317)
Q Consensus 231 ~vlSr~ll~~L~~~~d~C~~~~~~~~~~D~~lg~Cl~~lGV~lt~~~~ 278 (317)
.++++.+++.+....+. ..|..|..+..=+...|.++...|-
T Consensus 171 ~~~rr~~~~~i~~~~~~------~~~~~~~el~~~~~~~g~~i~~vp~ 212 (243)
T PLN02726 171 RLYKRSALEDLVSSVVS------KGYVFQMEIIVRASRKGYRIEEVPI 212 (243)
T ss_pred cceeHHHHHHHHhhccC------CCcEEehHHHHHHHHcCCcEEEeCc
Confidence 57899999998653221 2344565554434457877776653
No 47
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=80.52 E-value=10 Score=33.46 Aligned_cols=97 Identities=16% Similarity=0.061 Sum_probs=60.6
Q ss_pred CCccEEEEEcCCccccHHHHHHHHccCCCCCCeEEeecCCCCc--c----------c-----------ccccccccccCc
Q 021089 173 AGVRWFVFGDDDTVFFVDNLVKTLSKYDDDRWFYVGSNSEGYE--Q----------N-----------AKHSFGMAFGGG 229 (317)
Q Consensus 173 ~~~kWf~~~DDDTyv~~~nL~~~L~~~d~~~p~yiG~~~e~~~--~----------~-----------~~~g~~~~~GGa 229 (317)
.+.+|+++.|+|+.+..+.|.++++.+...+--.++....... . . ......+ ..|+
T Consensus 83 ~~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~ 161 (236)
T cd06435 83 PDAEIIAVIDADYQVEPDWLKRLVPIFDDPRVGFVQAPQDYRDGEESLFKRMCYAEYKGFFDIGMVSRNERNAII-QHGT 161 (236)
T ss_pred CCCCEEEEEcCCCCcCHHHHHHHHHHhcCCCeeEEecCccccCCCccHHHHHHhHHHHHHHHHHhccccccCceE-Eecc
Confidence 4589999999999999998998887775322223332210000 0 0 0000011 2467
Q ss_pred cccccHHHHHHHHHhhhhhhhhcccCCcchHHHHHHHHHhCCcceeCC
Q 021089 230 GFAISHSLARVLAGALDSCLMRYAHLYGSDARVFSCLVELGVGLTPEP 277 (317)
Q Consensus 230 G~vlSr~ll~~L~~~~d~C~~~~~~~~~~D~~lg~Cl~~lGV~lt~~~ 277 (317)
+.++++++++++.. ++++ .+.||..++.=+.+.|.++...|
T Consensus 162 ~~~~rr~~~~~iGg-f~~~------~~~eD~dl~~r~~~~G~~~~~~~ 202 (236)
T cd06435 162 MCLIRRSALDDVGG-WDEW------CITEDSELGLRMHEAGYIGVYVA 202 (236)
T ss_pred eEEEEHHHHHHhCC-CCCc------cccchHHHHHHHHHCCcEEEEcc
Confidence 78999999999753 2332 24689999988888887765543
No 48
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=80.31 E-value=3.6 Score=35.19 Aligned_cols=99 Identities=13% Similarity=0.083 Sum_probs=59.0
Q ss_pred CCccEEEEEcCCccccHHHHHHHHccCC--CCCCeEEeecCCC---C------cc---cccccccccccCccccccHHHH
Q 021089 173 AGVRWFVFGDDDTVFFVDNLVKTLSKYD--DDRWFYVGSNSEG---Y------EQ---NAKHSFGMAFGGGGFAISHSLA 238 (317)
Q Consensus 173 ~~~kWf~~~DDDTyv~~~nL~~~L~~~d--~~~p~yiG~~~e~---~------~~---~~~~g~~~~~GGaG~vlSr~ll 238 (317)
...+|+++.|+|..+..+.|.++++.++ +.-.+..|..... . .. .....+.....|++.++++.++
T Consensus 82 a~~d~i~~ld~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 161 (202)
T cd04184 82 ATGEFVALLDHDDELAPHALYEVVKALNEHPDADLIYSDEDKIDEGGKRSEPFFKPDWSPDLLLSQNYIGHLLVYRRSLV 161 (202)
T ss_pred hcCCEEEEECCCCcCChHHHHHHHHHHHhCCCCCEEEccHHhccCCCCEeccccCCCCCHHHhhhcCCccceEeEEHHHH
Confidence 3579999999999999888888887763 3333443332110 0 00 0000111234566778899998
Q ss_pred HHHHHhhhhhhhhcccCCcchHHHHHHHHHhCCcceeCC
Q 021089 239 RVLAGALDSCLMRYAHLYGSDARVFSCLVELGVGLTPEP 277 (317)
Q Consensus 239 ~~L~~~~d~C~~~~~~~~~~D~~lg~Cl~~lGV~lt~~~ 277 (317)
+++..- ++. + ..++|..++.=+.+.|.++...|
T Consensus 162 ~~iggf-~~~---~--~~~eD~~l~~rl~~~g~~~~~~~ 194 (202)
T cd04184 162 RQVGGF-REG---F--EGAQDYDLVLRVSEHTDRIAHIP 194 (202)
T ss_pred HHhCCC-CcC---c--ccchhHHHHHHHHhccceEEEcc
Confidence 887532 221 1 13478887776767777766554
No 49
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=78.37 E-value=29 Score=32.65 Aligned_cols=99 Identities=19% Similarity=0.158 Sum_probs=60.0
Q ss_pred ccEEEEEcCCccccHHHHHHHHccCCCCC-CeEEeecCCC-------------------Cc------cc----ccccccc
Q 021089 175 VRWFVFGDDDTVFFVDNLVKTLSKYDDDR-WFYVGSNSEG-------------------YE------QN----AKHSFGM 224 (317)
Q Consensus 175 ~kWf~~~DDDTyv~~~nL~~~L~~~d~~~-p~yiG~~~e~-------------------~~------~~----~~~g~~~ 224 (317)
.+|+++.++||.+..+.|.++++..+... ....|..... .. .. .......
T Consensus 85 ~~~~l~LN~D~~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (305)
T COG1216 85 DDYVLLLNPDTVVEPDLLEELLKAAEEDPAAGVVGPLIRNYDESLYIDRRGGESDGLTGGWRASPLLEIAPDLSSYLEVV 164 (305)
T ss_pred CcEEEEEcCCeeeChhHHHHHHHHHHhCCCCeEeeeeEecCCCCcchheeccccccccccceecccccccccccchhhhh
Confidence 33999999999998888888776544332 2222221100 00 00 0000001
Q ss_pred c-ccCccccccHHHHHHHHHhhhhhhhhcccCCcchHHHHHHHHHhCCcceeCCC
Q 021089 225 A-FGGGGFAISHSLARVLAGALDSCLMRYAHLYGSDARVFSCLVELGVGLTPEPG 278 (317)
Q Consensus 225 ~-~GGaG~vlSr~ll~~L~~~~d~C~~~~~~~~~~D~~lg~Cl~~lGV~lt~~~~ 278 (317)
+ .-|+..++++++++++.. +|+ ++. .+.+|+.++.=+.+.|.++.-.|.
T Consensus 165 ~~~~G~~~li~~~~~~~vG~-~de---~~F-~y~eD~D~~~R~~~~G~~i~~~p~ 214 (305)
T COG1216 165 ASLSGACLLIRREAFEKVGG-FDE---RFF-IYYEDVDLCLRARKAGYKIYYVPD 214 (305)
T ss_pred hhcceeeeEEcHHHHHHhCC-CCc---ccc-eeehHHHHHHHHHHcCCeEEEeec
Confidence 1 357779999999999876 443 122 345999999888899987665554
No 50
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=77.99 E-value=35 Score=37.40 Aligned_cols=93 Identities=16% Similarity=0.052 Sum_probs=58.3
Q ss_pred CCccEEEEEcCCccccHHHHHHHHccC--CCCCCeEEeecCCCC------------cc--c-------------cccccc
Q 021089 173 AGVRWFVFGDDDTVFFVDNLVKTLSKY--DDDRWFYVGSNSEGY------------EQ--N-------------AKHSFG 223 (317)
Q Consensus 173 ~~~kWf~~~DDDTyv~~~nL~~~L~~~--d~~~p~yiG~~~e~~------------~~--~-------------~~~g~~ 223 (317)
.+.+|+++.|.|+.+..+-|.+++..+ ||+ --.++.+.... .+ + ..+.-.
T Consensus 338 a~GEyIavlDAD~ip~pdfL~~~V~~f~~dP~-VglVQtp~~f~n~dp~~rnl~~~~~~~~e~~~fy~~iq~g~~~~~a~ 416 (852)
T PRK11498 338 AKGEFVAIFDCDHVPTRSFLQMTMGWFLKDKK-LAMMQTPHHFFSPDPFERNLGRFRKTPNEGTLFYGLVQDGNDMWDAT 416 (852)
T ss_pred CCCCEEEEECCCCCCChHHHHHHHHHHHhCCC-eEEEEcceeccCCchHHHhhHHHhhcccchhHHHHHHHhHHHhhccc
Confidence 467999999999999888888887654 333 22333221000 00 0 001111
Q ss_pred ccccCccccccHHHHHHHHHhhhhhhhhcccCCcchHHHHHHHHHhCCcce
Q 021089 224 MAFGGGGFAISHSLARVLAGALDSCLMRYAHLYGSDARVFSCLVELGVGLT 274 (317)
Q Consensus 224 ~~~GGaG~vlSr~ll~~L~~~~d~C~~~~~~~~~~D~~lg~Cl~~lGV~lt 274 (317)
++ .|++.++.+++++++..-.+ ....||..++..+...|-+..
T Consensus 417 ~~-~Gs~aviRReaLeeVGGfd~-------~titED~dlslRL~~~Gyrv~ 459 (852)
T PRK11498 417 FF-CGSCAVIRRKPLDEIGGIAV-------ETVTEDAHTSLRLHRRGYTSA 459 (852)
T ss_pred cc-ccceeeeEHHHHHHhcCCCC-------CccCccHHHHHHHHHcCCEEE
Confidence 23 46888999999998754211 124599999999998887654
No 51
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=76.85 E-value=9.3 Score=33.13 Aligned_cols=92 Identities=20% Similarity=0.231 Sum_probs=56.5
Q ss_pred CccEEEEEcCCccccHHHHHHHHccCCCCCCeEEeec-C--CCCc----------ccccccccccccCccccccHHHHHH
Q 021089 174 GVRWFVFGDDDTVFFVDNLVKTLSKYDDDRWFYVGSN-S--EGYE----------QNAKHSFGMAFGGGGFAISHSLARV 240 (317)
Q Consensus 174 ~~kWf~~~DDDTyv~~~nL~~~L~~~d~~~p~yiG~~-~--e~~~----------~~~~~g~~~~~GGaG~vlSr~ll~~ 240 (317)
..+|+++.|+|.++..+.|.+++........ ..|.. . +... ...........++.|+++++++.++
T Consensus 72 ~~~~i~~~D~D~~~~~~~l~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 150 (221)
T cd02522 72 RGDWLLFLHADTRLPPDWDAAIIETLRADGA-VAGAFRLRFDDPGPRLRLLELGANLRSRLFGLPYGDQGLFIRRELFEE 150 (221)
T ss_pred cCCEEEEEcCCCCCChhHHHHHHHHhhcCCc-EEEEEEeeecCCccchhhhhhcccceecccCCCcCCceEEEEHHHHHH
Confidence 4799999999999998888887766654433 33332 1 1000 0011111234567789999998877
Q ss_pred HHHhhhhhhhhcccCCcchHHHHHHHHHhCCcc
Q 021089 241 LAGALDSCLMRYAHLYGSDARVFSCLVELGVGL 273 (317)
Q Consensus 241 L~~~~d~C~~~~~~~~~~D~~lg~Cl~~lGV~l 273 (317)
+.. +++. .+.||..+..=+.+.|...
T Consensus 151 ~G~-fd~~------~~~ED~d~~~r~~~~G~~~ 176 (221)
T cd02522 151 LGG-FPEL------PLMEDVELVRRLRRRGRPA 176 (221)
T ss_pred hCC-CCcc------ccccHHHHHHHHHhCCCEE
Confidence 653 2221 2468988877666766554
No 52
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=76.61 E-value=48 Score=35.45 Aligned_cols=94 Identities=19% Similarity=0.115 Sum_probs=59.1
Q ss_pred CCccEEEEEcCCccccHHHHHHHHccCCCCCCe-EEeecCCCC-----c--------------------c--cccccccc
Q 021089 173 AGVRWFVFGDDDTVFFVDNLVKTLSKYDDDRWF-YVGSNSEGY-----E--------------------Q--NAKHSFGM 224 (317)
Q Consensus 173 ~~~kWf~~~DDDTyv~~~nL~~~L~~~d~~~p~-yiG~~~e~~-----~--------------------~--~~~~g~~~ 224 (317)
.+.+|+++.|.|+.+..+-|.+++..+..+..+ .++.+.... . + ...++-.+
T Consensus 227 a~gd~Il~lDAD~v~~pd~L~~~v~~f~~dp~v~~Vqtp~~f~~p~~~~~nl~~~~~~~~e~~~f~~~i~~g~~~~~~~~ 306 (713)
T TIGR03030 227 TDGELILIFDADHVPTRDFLQRTVGWFVEDPKLFLVQTPHFFVSPDPIERNLGTFRRMPNENELFYGLIQDGNDFWNAAF 306 (713)
T ss_pred cCCCEEEEECCCCCcChhHHHHHHHHHHhCCCEEEEeCCeeccCCCHHhhhhHHHHHhhhHHHHHHHHHHHHHhhhCCee
Confidence 457999999999999999999988877322222 222211000 0 0 00111112
Q ss_pred cccCccccccHHHHHHHHHhhhhhhhhcccCCcchHHHHHHHHHhCCcce
Q 021089 225 AFGGGGFAISHSLARVLAGALDSCLMRYAHLYGSDARVFSCLVELGVGLT 274 (317)
Q Consensus 225 ~~GGaG~vlSr~ll~~L~~~~d~C~~~~~~~~~~D~~lg~Cl~~lGV~lt 274 (317)
..|++.++.|++++++..... ....||..++..+...|.+..
T Consensus 307 -~~Gs~~~iRR~al~~iGGf~~-------~~vtED~~l~~rL~~~G~~~~ 348 (713)
T TIGR03030 307 -FCGSAAVLRREALDEIGGIAG-------ETVTEDAETALKLHRRGWNSA 348 (713)
T ss_pred -ecCceeEEEHHHHHHcCCCCC-------CCcCcHHHHHHHHHHcCCeEE
Confidence 347889999999988653211 123599999999998887743
No 53
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=75.57 E-value=12 Score=31.45 Aligned_cols=97 Identities=15% Similarity=0.123 Sum_probs=57.5
Q ss_pred CCccEEEEEcCCccccHHHHHHHHccC--CCCCCeEEeecCC---CC---c------c-cccccccccccCccccccHHH
Q 021089 173 AGVRWFVFGDDDTVFFVDNLVKTLSKY--DDDRWFYVGSNSE---GY---E------Q-NAKHSFGMAFGGGGFAISHSL 237 (317)
Q Consensus 173 ~~~kWf~~~DDDTyv~~~nL~~~L~~~--d~~~p~yiG~~~e---~~---~------~-~~~~g~~~~~GGaG~vlSr~l 237 (317)
-+.+|++++|+|..+..+.+.+++... +++..+..|.... .. . . ...........|+|+++++.+
T Consensus 74 a~~~~v~~ld~D~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (202)
T cd06433 74 ATGDIIGFLNSDDTLLPGALLAVVAAFAEHPEVDVVYGDVLLVDENGRVIGRRRPPPFLDKFLLYGMPICHQATFFRRSL 153 (202)
T ss_pred cCCCEEEEeCCCcccCchHHHHHHHHHHhCCCccEEEeeeEEEcCCCCcccCCCCcchhhhHHhhcCcccCcceEEEHHH
Confidence 357999999999999988888877322 3444555565321 00 0 0 011111234457789999999
Q ss_pred HHHHHHhhhhhhhhcccCCcchHHHHHHHHHhCCccee
Q 021089 238 ARVLAGALDSCLMRYAHLYGSDARVFSCLVELGVGLTP 275 (317)
Q Consensus 238 l~~L~~~~d~C~~~~~~~~~~D~~lg~Cl~~lGV~lt~ 275 (317)
++++.. +++ .+ .+++|..+..=+.+.|.....
T Consensus 154 ~~~~~~-f~~---~~--~~~~D~~~~~r~~~~g~~~~~ 185 (202)
T cd06433 154 FEKYGG-FDE---SY--RIAADYDLLLRLLLAGKIFKY 185 (202)
T ss_pred HHHhCC-Cch---hh--CchhhHHHHHHHHHcCCceEe
Confidence 988754 221 11 234787776666666666533
No 54
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=75.05 E-value=6.3 Score=34.55 Aligned_cols=38 Identities=16% Similarity=0.209 Sum_probs=27.1
Q ss_pred CCccEEEEEcCCccccHHHHHHHHccCCCCCCeEEeec
Q 021089 173 AGVRWFVFGDDDTVFFVDNLVKTLSKYDDDRWFYVGSN 210 (317)
Q Consensus 173 ~~~kWf~~~DDDTyv~~~nL~~~L~~~d~~~p~yiG~~ 210 (317)
...+|++++|+|+.+..+.|.+++..+.......+|..
T Consensus 83 a~gd~i~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~~~ 120 (219)
T cd06913 83 SSGRYLCFLDSDDVMMPQRIRLQYEAALQHPNSIIGCQ 120 (219)
T ss_pred cCCCEEEEECCCccCChhHHHHHHHHHHhCCCcEEEEE
Confidence 46799999999999998887776655533333455653
No 55
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=73.89 E-value=36 Score=33.96 Aligned_cols=94 Identities=13% Similarity=0.115 Sum_probs=55.1
Q ss_pred CCccEEEEEcCCccccHHHHHHHHccCCCCCCe--EEeecCCCC---c----------cc-----------------ccc
Q 021089 173 AGVRWFVFGDDDTVFFVDNLVKTLSKYDDDRWF--YVGSNSEGY---E----------QN-----------------AKH 220 (317)
Q Consensus 173 ~~~kWf~~~DDDTyv~~~nL~~~L~~~d~~~p~--yiG~~~e~~---~----------~~-----------------~~~ 220 (317)
.+.+|+++.|+|+.+..+.|.++++.+..++.+ .-|...... . +. ...
T Consensus 130 s~g~~v~~~DaD~~~~~d~L~~l~~~f~~~~~v~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~r~~~s~~ 209 (439)
T TIGR03111 130 SIGKYIIHIDSDGKLHKDAIKNMVTRFENNPDIHAMTGVILTDKELIEKTKGRFLKLIRRCEYFEYAQAFLAGRNFESQV 209 (439)
T ss_pred ccCCEEEEECCCCCcChHHHHHHHHHHHhCCCeEEEEeEEecCchhhhhhcchhhhHhHHhHHHHHHHHHHhhhHHHHhc
Confidence 457899999999999999999998887533322 223221100 0 00 000
Q ss_pred cccccccCccccccHHHHHHHHHhhhhhhhhcccCCcchHHHHHHHHH-hCCcc
Q 021089 221 SFGMAFGGGGFAISHSLARVLAGALDSCLMRYAHLYGSDARVFSCLVE-LGVGL 273 (317)
Q Consensus 221 g~~~~~GGaG~vlSr~ll~~L~~~~d~C~~~~~~~~~~D~~lg~Cl~~-lGV~l 273 (317)
+..++..|++.++.++++++.... +. ...+||..++.=+.. .|-++
T Consensus 210 ~~~~~~sGa~~~~Rr~~l~~vggf-~~------~~i~ED~~l~~rl~~~~g~kv 256 (439)
T TIGR03111 210 NSLFTLSGAFSAFRRETILKTQLY-NS------ETVGEDTDMTFQIRELLDGKV 256 (439)
T ss_pred CCeEEEccHHHhhhHHHHHHhCCC-CC------CCcCccHHHHHHHHHhcCCeE
Confidence 112344577788999888775321 11 234699998865543 45444
No 56
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=73.13 E-value=10 Score=29.57 Aligned_cols=74 Identities=16% Similarity=0.134 Sum_probs=45.3
Q ss_pred CccEEEEEcCCccccHHHHHHHHccCCCCCCeEEeecCCCCcccccccccccccCccccccHHHHHHHHHhhhhhhhhcc
Q 021089 174 GVRWFVFGDDDTVFFVDNLVKTLSKYDDDRWFYVGSNSEGYEQNAKHSFGMAFGGGGFAISHSLARVLAGALDSCLMRYA 253 (317)
Q Consensus 174 ~~kWf~~~DDDTyv~~~nL~~~L~~~d~~~p~yiG~~~e~~~~~~~~g~~~~~GGaG~vlSr~ll~~L~~~~d~C~~~~~ 253 (317)
+.+|++++|+|..+..+.+..++..+-..+..-+ +.+.++++++++.++++....+.-
T Consensus 77 ~~d~v~~~d~D~~~~~~~~~~~~~~~~~~~~~~~-----------------v~~~~~~~~~~~~~~~~~~~~~~~----- 134 (156)
T cd00761 77 RGEYILFLDADDLLLPDWLERLVAELLADPEADA-----------------VGGPGNLLFRRELLEEIGGFDEAL----- 134 (156)
T ss_pred cCCEEEEECCCCccCccHHHHHHHHHhcCCCceE-----------------EeccchheeeHHHHHHhCCcchHh-----
Confidence 6899999999999988888776443322211110 111177899999999886542221
Q ss_pred cCCcchHHHHHHHHHh
Q 021089 254 HLYGSDARVFSCLVEL 269 (317)
Q Consensus 254 ~~~~~D~~lg~Cl~~l 269 (317)
..+++|..+..-+...
T Consensus 135 ~~~~ed~~~~~~~~~~ 150 (156)
T cd00761 135 LSGEEDDDFLLRLLRG 150 (156)
T ss_pred cCCcchHHHHHHHHhh
Confidence 1224676666555443
No 57
>PF02485 Branch: Core-2/I-Branching enzyme; InterPro: IPR003406 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This is the glycosyltransferase family 14 GT14 from CAZY, a family of two different beta-1,6-N-acetylglucosaminyltransferase enzymes, I-branching enzyme (2.4.1.150 from EC) and core-2 branching enzyme (2.4.1.102 from EC). I-branching enzyme, an integral membrane protein, converts linear into branched poly-N-acetyllactosaminoglycans in the glycosylation pathway, and is responsible for the production of the blood group I-antigen during embryonic development []. Core-2 branching enzyme, also an integral membrane protein, forms crucial side-chain branches in O-glycans in the glycosylation pathway [].; GO: 0008375 acetylglucosaminyltransferase activity, 0016020 membrane; PDB: 3OTK_D 2GAM_A 2GAK_B.
Probab=71.02 E-value=26 Score=31.67 Aligned_cols=152 Identities=13% Similarity=0.198 Sum_probs=70.1
Q ss_pred EEEEEecCCCchHHHHHHHHHHhCCCCCeEEEEecCCCCC--CC---CCCCCCCceeecCCCCCCccCCCCCchhhH-HH
Q 021089 85 LLFSIASSSSSWPRRRSYVRLWYSPNSTRALTFLDRAADS--SS---AGDPSLPRIVISADTSKFPFTFPKGLRSAV-RV 158 (317)
Q Consensus 85 I~f~I~Ts~~~~~~R~~~i~~ww~~~~~~~~vfsD~~~~~--~~---~~~~~lp~v~i~~d~~~~~y~~~~g~~~a~-r~ 158 (317)
|.|.|.......+.-...++....+ ...++|.+|..... .. +.....+.+.+..+.-. ..+|.-+-. -.
T Consensus 1 iAylil~h~~~~~~~~~l~~~l~~~-~~~f~iHiD~k~~~~~~~~~~~~~~~~~nv~~v~~r~~----v~WG~~S~v~A~ 75 (244)
T PF02485_consen 1 IAYLILAHKNDPEQLERLLRLLYHP-DNDFYIHIDKKSPDYFYEEIKKLISCFPNVHFVPKRVD----VRWGGFSLVEAT 75 (244)
T ss_dssp EEEEEEESS--HHHHHHHHHHH--T-TSEEEEEE-TTS-HHHHHHHHHHHCT-TTEEE-SS---------TTSHHHHHHH
T ss_pred CEEEEEecCCCHHHHHHHHHHhcCC-CCEEEEEEcCCCChHHHHHHHHhcccCCceeecccccc----cccCCccHHHHH
Confidence 4567777554433332444444433 56777888887321 11 11245566655442211 122332222 22
Q ss_pred HHHHHHHHHhccccCCccEEEEEcCCcccc--HHHHHHHHccCCCCCCeEEeecCCCC---cccccc---cc-------c
Q 021089 159 ARVVKEAVDLTDEKAGVRWFVFGDDDTVFF--VDNLVKTLSKYDDDRWFYVGSNSEGY---EQNAKH---SF-------G 223 (317)
Q Consensus 159 ~~~l~~~~~~~~~~~~~kWf~~~DDDTyv~--~~nL~~~L~~~d~~~p~yiG~~~e~~---~~~~~~---g~-------~ 223 (317)
..+++++.+.. .+.+||++.-++.|-. .+.+.++|+..+....+.-+...+.. ...... .+ .
T Consensus 76 l~ll~~al~~~---~~~~y~~llSg~D~Pl~s~~~i~~~l~~~~~~~~f~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~ 152 (244)
T PF02485_consen 76 LNLLREALKRD---GDWDYFILLSGQDYPLKSNEEIHEFLESNNGDNNFIESFSDEDPRESGRYNPRIYDPFRPFFRKRT 152 (244)
T ss_dssp HHHHHHHHHH----S---EEEEEETTEEESS-HHHHHHHHHHTTT--B---BEE--GGGG-HHHHEEEETTEEEEEEEE-
T ss_pred HHHHHHHHhcC---CCCcEEEEcccccccccchHHHHHHHHhcCCCCcceecccccccchhhcceeeeeeeccccccccc
Confidence 35677776643 6899999999999988 67788999886433332222221111 000000 00 1
Q ss_pred ccccCccccccHHHHHHHHHh
Q 021089 224 MAFGGGGFAISHSLARVLAGA 244 (317)
Q Consensus 224 ~~~GGaG~vlSr~ll~~L~~~ 244 (317)
...|..=++|||++++.+...
T Consensus 153 ~~~GSqW~~Ltr~~v~~il~~ 173 (244)
T PF02485_consen 153 LYKGSQWFSLTRDFVEYILDD 173 (244)
T ss_dssp -EEE-S--EEEHHHHHHHHH-
T ss_pred ccccceeeEeeHHHHHHhhhh
Confidence 246777889999999998843
No 58
>PF05637 Glyco_transf_34: galactosyl transferase GMA12/MNN10 family; InterPro: IPR008630 This family contains a number of glycosyltransferase enzymes that contain a DXD motif. This family includes a number of Caenorhabditis elegans homologues where the DXD is replaced by DXH. Some members of this family are included in glycosyltransferase family 34.; GO: 0016758 transferase activity, transferring hexosyl groups, 0016021 integral to membrane; PDB: 2P72_B 2P73_A 2P6W_A.
Probab=69.38 E-value=3.9 Score=37.69 Aligned_cols=33 Identities=12% Similarity=0.253 Sum_probs=24.1
Q ss_pred hhhHHHHHHHHHHHHhccccCCccEEEEEcCCcccc
Q 021089 153 RSAVRVARVVKEAVDLTDEKAGVRWFVFGDDDTVFF 188 (317)
Q Consensus 153 ~~a~r~~~~l~~~~~~~~~~~~~kWf~~~DDDTyv~ 188 (317)
+..|....+++++...+ |+++|++.+|.|+++.
T Consensus 58 ~~~W~K~~~lr~~m~~~---P~~~wv~~lD~Dali~ 90 (239)
T PF05637_consen 58 PGSWAKIPALRAAMKKY---PEAEWVWWLDSDALIM 90 (239)
T ss_dssp HHHHTHHHHHHHHHHH----TT-SEEEEE-TTEEE-
T ss_pred ChhhHHHHHHHHHHHhC---CCCCEEEEEcCCeEEE
Confidence 45687777888877665 8999999999999987
No 59
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=67.16 E-value=16 Score=30.83 Aligned_cols=70 Identities=14% Similarity=0.034 Sum_probs=47.2
Q ss_pred CccEEEEEcCCccccHHHHHHHHccCCCCCCeEEeecCCCCcc--------------ccccccc-ccccCccccccHHHH
Q 021089 174 GVRWFVFGDDDTVFFVDNLVKTLSKYDDDRWFYVGSNSEGYEQ--------------NAKHSFG-MAFGGGGFAISHSLA 238 (317)
Q Consensus 174 ~~kWf~~~DDDTyv~~~nL~~~L~~~d~~~p~yiG~~~e~~~~--------------~~~~g~~-~~~GGaG~vlSr~ll 238 (317)
..+|++++|+|.....+-|.++++.++....+.+|........ ....+.. ...+|+.++++++++
T Consensus 80 ~~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 159 (181)
T cd04187 80 RGDAVITMDADLQDPPELIPEMLAKWEEGYDVVYGVRKNRKESWLKRLTSKLFYRLINKLSGVDIPDNGGDFRLMDRKVV 159 (181)
T ss_pred CCCEEEEEeCCCCCCHHHHHHHHHHHhCCCcEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCCCCCCCCCEEEEcHHHH
Confidence 4599999999999988888888877766677888876422110 0000111 123466678999999
Q ss_pred HHHHH
Q 021089 239 RVLAG 243 (317)
Q Consensus 239 ~~L~~ 243 (317)
+++..
T Consensus 160 ~~i~~ 164 (181)
T cd04187 160 DALLL 164 (181)
T ss_pred HHHHh
Confidence 98774
No 60
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=63.42 E-value=16 Score=34.98 Aligned_cols=71 Identities=10% Similarity=-0.011 Sum_probs=48.7
Q ss_pred CCccEEEEEcCCccccHHHHHHHHccCCCCCCeEEeecCCCCcc--------------cccccccccccCccc-cccHHH
Q 021089 173 AGVRWFVFGDDDTVFFVDNLVKTLSKYDDDRWFYVGSNSEGYEQ--------------NAKHSFGMAFGGGGF-AISHSL 237 (317)
Q Consensus 173 ~~~kWf~~~DDDTyv~~~nL~~~L~~~d~~~p~yiG~~~e~~~~--------------~~~~g~~~~~GGaG~-vlSr~l 237 (317)
.+.+|+++.|+|.-..++.+.++++.....-++..|........ ....+.++...++|+ ++++.+
T Consensus 89 A~gd~vv~~DaD~q~~p~~i~~l~~~~~~~~DvV~~~r~~~~~~~~r~~~s~~~~~l~~~~~g~~~~d~~~gfr~~~r~~ 168 (325)
T PRK10714 89 VTGDLIITLDADLQNPPEEIPRLVAKADEGYDVVGTVRQNRQDSWFRKTASKMINRLIQRTTGKAMGDYGCMLRAYRRHI 168 (325)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHhhCCEEEEEEcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCCcCeEEEcHHH
Confidence 46799999999999999999888887654445665654321100 011233456677888 889999
Q ss_pred HHHHHH
Q 021089 238 ARVLAG 243 (317)
Q Consensus 238 l~~L~~ 243 (317)
++.+..
T Consensus 169 ~~~l~~ 174 (325)
T PRK10714 169 VDAMLH 174 (325)
T ss_pred HHHHHH
Confidence 999854
No 61
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=63.08 E-value=18 Score=37.19 Aligned_cols=101 Identities=14% Similarity=-0.050 Sum_probs=61.0
Q ss_pred CCccEEEEEcCCccccHHHHHHHHccCCCCC-----CeEEeecCCCCc-----------c-----c--ccccccccccCc
Q 021089 173 AGVRWFVFGDDDTVFFVDNLVKTLSKYDDDR-----WFYVGSNSEGYE-----------Q-----N--AKHSFGMAFGGG 229 (317)
Q Consensus 173 ~~~kWf~~~DDDTyv~~~nL~~~L~~~d~~~-----p~yiG~~~e~~~-----------~-----~--~~~g~~~~~GGa 229 (317)
.+++++++.|-|+.+.++.|..+-.. .++. |++.+....... . . ...|-..+.+|+
T Consensus 157 ~~~d~vvi~DAD~~v~Pd~Lr~~~~~-~~~~~~VQ~pv~~~~~~~~~~~ag~y~~ef~~~~~~~l~~r~~LG~~~~~~Gt 235 (504)
T PRK14716 157 IRFAIIVLHDAEDVIHPLELRLYNYL-LPRHDFVQLPVFSLPRDWGEWVAGTYMDEFAESHLKDLPVREALGGLIPSAGV 235 (504)
T ss_pred CCcCEEEEEcCCCCcCccHHHHHHhh-cCCCCEEecceeccCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCe
Confidence 45799999999999999888765332 2222 233221111000 0 0 112222345699
Q ss_pred cccccHHHHHHHHHhhhhhhhhc-ccCCcchHHHHHHHHHhCCcceeC
Q 021089 230 GFAISHSLARVLAGALDSCLMRY-AHLYGSDARVFSCLVELGVGLTPE 276 (317)
Q Consensus 230 G~vlSr~ll~~L~~~~d~C~~~~-~~~~~~D~~lg~Cl~~lGV~lt~~ 276 (317)
|+++++++++++....... .+ .....||..+|.-+...|.+..-.
T Consensus 236 g~afRR~aLe~l~~~~GG~--~fd~~sLTED~dLglRL~~~G~rv~y~ 281 (504)
T PRK14716 236 GTAFSRRALERLAAERGGQ--PFDSDSLTEDYDIGLRLKRAGFRQIFV 281 (504)
T ss_pred eEEeEHHHHHHHHhhcCCC--CCCCCCcchHHHHHHHHHHCCCEEEEe
Confidence 9999999999985421110 01 123459999999999988876543
No 62
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=59.22 E-value=4.8 Score=32.50 Aligned_cols=37 Identities=22% Similarity=0.262 Sum_probs=23.5
Q ss_pred CccEEEEEcCCccccHHHHHHHHccCCC-CCCeEEeec
Q 021089 174 GVRWFVFGDDDTVFFVDNLVKTLSKYDD-DRWFYVGSN 210 (317)
Q Consensus 174 ~~kWf~~~DDDTyv~~~nL~~~L~~~d~-~~p~yiG~~ 210 (317)
..+|++++|||+++..+.|.++++.++. .....+|..
T Consensus 78 ~~~~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~ 115 (169)
T PF00535_consen 78 KGEYILFLDDDDIISPDWLEELVEALEKNPPDVVIGSV 115 (169)
T ss_dssp -SSEEEEEETTEEE-TTHHHHHHHHHHHCTTEEEEEEE
T ss_pred ceeEEEEeCCCceEcHHHHHHHHHHHHhCCCcEEEEEE
Confidence 3559999999999996666666555443 333555553
No 63
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=58.73 E-value=20 Score=33.10 Aligned_cols=104 Identities=13% Similarity=0.086 Sum_probs=62.3
Q ss_pred CCccEEEEEcCCccccHHHHHHHHccC--CCCCCeE----EeecCCCCc---c------------c-cc---cccccccc
Q 021089 173 AGVRWFVFGDDDTVFFVDNLVKTLSKY--DDDRWFY----VGSNSEGYE---Q------------N-AK---HSFGMAFG 227 (317)
Q Consensus 173 ~~~kWf~~~DDDTyv~~~nL~~~L~~~--d~~~p~y----iG~~~e~~~---~------------~-~~---~g~~~~~G 227 (317)
.+++++++.|.|+.+.++.|.+++..+ ||+--.. .+....... + . .. .+. ..+.
T Consensus 94 ~~~~~i~~~DaD~~~~p~~l~~~v~~~~~~~~vg~vq~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 172 (254)
T cd04191 94 SRYDYMVVLDADSLMSGDTIVRLVRRMEANPRAGIIQTAPKLIGAETLFARLQQFANRLYGPVFGRGLAAWQGGE-GNYW 172 (254)
T ss_pred CCCCEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEeCCceeECCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCc-cCcc
Confidence 468999999999999999999999877 4431111 111111110 0 0 00 011 1234
Q ss_pred CccccccHHHHHHHHHh--hhhhhhhc-ccCCcchHHHHHHHHHhCCcceeCCC
Q 021089 228 GGGFAISHSLARVLAGA--LDSCLMRY-AHLYGSDARVFSCLVELGVGLTPEPG 278 (317)
Q Consensus 228 GaG~vlSr~ll~~L~~~--~d~C~~~~-~~~~~~D~~lg~Cl~~lGV~lt~~~~ 278 (317)
|+++++.++++.++... .+.. ..+ .....+|..+|..+...|-.+.-.|.
T Consensus 173 G~~~~~Rr~al~~~~~~~~i~g~-g~~~~~~l~eD~~l~~~~~~~G~ri~~~~~ 225 (254)
T cd04191 173 GHNAIIRVAAFMEHCALPVLPGR-PPFGGHILSHDFVEAALMRRAGWEVRLAPD 225 (254)
T ss_pred ceEEEEEHHHHHHhcCCccccCC-CCCCCCeecHHHHHHHHHHHcCCEEEEccC
Confidence 78899999998875321 1111 011 12345999999999988877665553
No 64
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=57.42 E-value=23 Score=32.86 Aligned_cols=100 Identities=21% Similarity=0.136 Sum_probs=56.1
Q ss_pred CCccEEEEEcCCccccHHHHHHHHccCCCCCCeEEeecC----C-CC-------------------ccc-----------
Q 021089 173 AGVRWFVFGDDDTVFFVDNLVKTLSKYDDDRWFYVGSNS----E-GY-------------------EQN----------- 217 (317)
Q Consensus 173 ~~~kWf~~~DDDTyv~~~nL~~~L~~~d~~~p~yiG~~~----e-~~-------------------~~~----------- 217 (317)
-..+|++++|+|+.+...-|.++|+.+.......+|... . .. ...
T Consensus 82 A~gd~i~fLD~D~~~~~~wL~~ll~~l~~~~~~~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (299)
T cd02510 82 ATGDVLVFLDSHCEVNVGWLEPLLARIAENRKTVVCPIIDVIDADTFEYRGSSGDARGGFDWSLHFKWLPLPEEERRRES 161 (299)
T ss_pred ccCCEEEEEeCCcccCccHHHHHHHHHHhCCCeEEEeeeccccCCCeeEecCCCceeEEecccceeccccCCHHHhhhcC
Confidence 357999999999999877777776654322222222100 0 00 000
Q ss_pred --ccccccccccCccccccHHHHHHHHHhhhhhhhhcccCCcchHHHHHHHHHhCCcceeCC
Q 021089 218 --AKHSFGMAFGGGGFAISHSLARVLAGALDSCLMRYAHLYGSDARVFSCLVELGVGLTPEP 277 (317)
Q Consensus 218 --~~~g~~~~~GGaG~vlSr~ll~~L~~~~d~C~~~~~~~~~~D~~lg~Cl~~lGV~lt~~~ 277 (317)
..... ....|+.+++++++++++.. +|+. +.....||+.+..=+.+.|-.+...|
T Consensus 162 ~~~~~~~-~~~~g~~~~irr~~~~~vGg-fDe~---~~~~~~ED~Dl~~R~~~~G~~i~~~p 218 (299)
T cd02510 162 PTAPIRS-PTMAGGLFAIDREWFLELGG-YDEG---MDIWGGENLELSFKVWQCGGSIEIVP 218 (299)
T ss_pred CCCCccC-ccccceeeEEEHHHHHHhCC-CCCc---ccccCchhHHHHHHHHHcCCeEEEee
Confidence 00111 12346778999999988754 3332 11112389887766667787665443
No 65
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=54.43 E-value=17 Score=30.37 Aligned_cols=37 Identities=22% Similarity=0.126 Sum_probs=29.9
Q ss_pred ccEEEEEcCCccccHHHHHHHHcc-CCCCCCeEEeecC
Q 021089 175 VRWFVFGDDDTVFFVDNLVKTLSK-YDDDRWFYVGSNS 211 (317)
Q Consensus 175 ~kWf~~~DDDTyv~~~nL~~~L~~-~d~~~p~yiG~~~ 211 (317)
.+|++++|+|+.+..+.|.++++. .+....+..|...
T Consensus 80 gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~~~ 117 (185)
T cd04179 80 GDIVVTMDADLQHPPEDIPKLLEKLLEGGADVVIGSRF 117 (185)
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEEEee
Confidence 499999999999998888888886 4555667777754
No 66
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=50.82 E-value=1.5e+02 Score=28.83 Aligned_cols=77 Identities=19% Similarity=0.266 Sum_probs=48.7
Q ss_pred HHHHHHHhccccCCccEEEEEcCCccccHH---HHHHHHccCCCCCCe-EEeec-CCCCcc-----cccccccccccCcc
Q 021089 161 VVKEAVDLTDEKAGVRWFVFGDDDTVFFVD---NLVKTLSKYDDDRWF-YVGSN-SEGYEQ-----NAKHSFGMAFGGGG 230 (317)
Q Consensus 161 ~l~~~~~~~~~~~~~kWf~~~DDDTyv~~~---nL~~~L~~~d~~~p~-yiG~~-~e~~~~-----~~~~g~~~~~GGaG 230 (317)
.+.++++. .+++-.+++|||-.+.++ .+.+.|..|..++.+ .|+.. ..+... ....-+.-.+.|.|
T Consensus 88 aln~vF~~----~~~~~vIILEDDl~~sPdFf~yf~~~l~~y~~D~~v~~ISa~NdnG~~~~~~~~~~~lyrs~ff~glG 163 (334)
T cd02514 88 ALTQTFNL----FGYSFVIILEDDLDIAPDFFSYFQATLPLLEEDPSLWCISAWNDNGKEHFVDDTPSLLYRTDFFPGLG 163 (334)
T ss_pred HHHHHHHh----cCCCEEEEECCCCccCHhHHHHHHHHHHHHhcCCCEEEEEeeccCCcccccCCCcceEEEecCCCchH
Confidence 55555543 369999999999999977 667778777655544 33332 111111 00000112456899
Q ss_pred ccccHHHHHHH
Q 021089 231 FAISHSLARVL 241 (317)
Q Consensus 231 ~vlSr~ll~~L 241 (317)
+++.+.+.+.+
T Consensus 164 Wml~r~~W~e~ 174 (334)
T cd02514 164 WMLTRKLWKEL 174 (334)
T ss_pred HHHHHHHHHHh
Confidence 99999999988
No 67
>PLN03182 xyloglucan 6-xylosyltransferase; Provisional
Probab=47.73 E-value=17 Score=36.39 Aligned_cols=56 Identities=16% Similarity=0.217 Sum_probs=36.7
Q ss_pred CchhhHHHHHHHHHHHHhccccCCccEEEEEcCCccccHHHHHHHHccCCCCCCeEEee
Q 021089 151 GLRSAVRVARVVKEAVDLTDEKAGVRWFVFGDDDTVFFVDNLVKTLSKYDDDRWFYVGS 209 (317)
Q Consensus 151 g~~~a~r~~~~l~~~~~~~~~~~~~kWf~~~DDDTyv~~~nL~~~L~~~d~~~p~yiG~ 209 (317)
+.+..|....+++.+...+ |+++||..+|.|+++-=.++.-=|++|.....+.-|.
T Consensus 177 ~~p~~WaKlpaLR~aM~~~---PeaEWiWWLDsDALImNmsfelPlery~~~NlVihg~ 232 (429)
T PLN03182 177 EMAGFWAKLPLLRKLMLAH---PEVEWIWWMDSDALFTDMTFEIPLEKYEGYNLVIHGW 232 (429)
T ss_pred CCCcchhHHHHHHHHHHHC---CCceEEEEecCCceeecCCCCCCHhHcCCcCeeeccc
Confidence 3456787777888776654 9999999999999985322222355665443444443
No 68
>COG3306 Glycosyltransferase involved in LPS biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=47.13 E-value=1.2e+02 Score=28.20 Aligned_cols=87 Identities=18% Similarity=0.202 Sum_probs=47.4
Q ss_pred hhHHHHHHHHHHHHhccccCCccEEEEEcCCcccc---HHHHHHHHcc---CCCC-------------CCeEEeecCCCC
Q 021089 154 SAVRVARVVKEAVDLTDEKAGVRWFVFGDDDTVFF---VDNLVKTLSK---YDDD-------------RWFYVGSNSEGY 214 (317)
Q Consensus 154 ~a~r~~~~l~~~~~~~~~~~~~kWf~~~DDDTyv~---~~nL~~~L~~---~d~~-------------~p~yiG~~~e~~ 214 (317)
|+..+..+.+.+.+ .+..+.++++||..+- .+.|...+.. ++.. .++..+......
T Consensus 71 C~lSH~~lw~~~~~-----~~~~yi~I~EDDV~l~~~f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (255)
T COG3306 71 CYLSHLKLWKKALE-----ENLPYILILEDDVVLGEDFEEFLEDDLKLPVRFLGDDIDIHRLETFLSPNPLAFNAVFIGR 145 (255)
T ss_pred HHHHHHHHHHHHHh-----CCCCeEEEecccccccccHHHHHHHHHhhhhhccchHHHHHHHHHhcccceeecccccccc
Confidence 55566556665555 4566999999999886 3334433322 1111 011111000000
Q ss_pred cccccccccccccCccccccHHHHHHHHHhhhh
Q 021089 215 EQNAKHSFGMAFGGGGFAISHSLARVLAGALDS 247 (317)
Q Consensus 215 ~~~~~~g~~~~~GGaG~vlSr~ll~~L~~~~d~ 247 (317)
+-.....+--|-+||++|+.+++++.+....
T Consensus 146 --~~~~~~~~~~gt~gYiis~~aAk~fl~~~~~ 176 (255)
T COG3306 146 --NFPLLNSYHLGTAGYIISRKAAKKFLELTES 176 (255)
T ss_pred --cchhhhhcccCccceeecHHHHHHHHHHhhh
Confidence 0000111235779999999999999987553
No 69
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=45.97 E-value=27 Score=27.86 Aligned_cols=27 Identities=26% Similarity=0.242 Sum_probs=21.9
Q ss_pred CCccEEEEEcCCccccHHHHHHHHccC
Q 021089 173 AGVRWFVFGDDDTVFFVDNLVKTLSKY 199 (317)
Q Consensus 173 ~~~kWf~~~DDDTyv~~~nL~~~L~~~ 199 (317)
.+.+|++++|+|..+..+.|.+++..+
T Consensus 77 ~~~~~i~~~D~D~~~~~~~l~~~~~~~ 103 (180)
T cd06423 77 AKGDIVVVLDADTILEPDALKRLVVPF 103 (180)
T ss_pred cCCCEEEEECCCCCcChHHHHHHHHHh
Confidence 468999999999999887788774443
No 70
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=41.23 E-value=1.6e+02 Score=31.61 Aligned_cols=103 Identities=18% Similarity=0.182 Sum_probs=59.1
Q ss_pred CCccEEEEEcCCccccHHHHHHHHccC--CCCC------CeEEeecCCCCc----ccc--------cccccc------cc
Q 021089 173 AGVRWFVFGDDDTVFFVDNLVKTLSKY--DDDR------WFYVGSNSEGYE----QNA--------KHSFGM------AF 226 (317)
Q Consensus 173 ~~~kWf~~~DDDTyv~~~nL~~~L~~~--d~~~------p~yiG~~~e~~~----~~~--------~~g~~~------~~ 226 (317)
.++|+++..|-|+.+..+-|.+++..+ ||+- +...+. ++.. +.. ..|..+ .+
T Consensus 219 ~~~eyivvLDADs~m~~d~L~~lv~~m~~dP~vGlVQt~~~~~n~--~slfaR~qqf~~~~y~~~~~~G~~~w~~~~g~f 296 (691)
T PRK05454 219 GAYDYMVVLDADSLMSGDTLVRLVRLMEANPRAGLIQTLPVAVGA--DTLFARLQQFATRVYGPLFAAGLAWWQGGEGNY 296 (691)
T ss_pred CCcCEEEEEcCCCCCCHHHHHHHHHHHhhCcCEEEEeCCccCcCC--CCHHHHHHHHHHHHHHHHHHhhhhhhccCcccc
Confidence 678999999999999999999999876 4431 111111 1100 000 000000 12
Q ss_pred cCccccccHHHHHHHHHh--hhhhhhhc-ccCCcchHHHHHHHHHhCCcceeCCC
Q 021089 227 GGGGFAISHSLARVLAGA--LDSCLMRY-AHLYGSDARVFSCLVELGVGLTPEPG 278 (317)
Q Consensus 227 GGaG~vlSr~ll~~L~~~--~d~C~~~~-~~~~~~D~~lg~Cl~~lGV~lt~~~~ 278 (317)
-|.+.++.+.++.+.... .... ..+ .+...+|..+|..+...|-++...|.
T Consensus 297 ~G~naIiR~~af~~~~glp~L~g~-~p~~~~~LseD~~~a~~l~~~GyrV~~~pd 350 (691)
T PRK05454 297 WGHNAIIRVKAFAEHCGLPPLPGR-GPFGGHILSHDFVEAALMRRAGWGVWLAPD 350 (691)
T ss_pred ccceEEEEHHHHHHhcCCcccccc-CCCCCCcccHHHHHHHHHHHCCCEEEEcCc
Confidence 355567777776654321 1110 011 12345899999999988877665544
No 71
>PRK11234 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=39.75 E-value=1.7e+02 Score=31.68 Aligned_cols=102 Identities=14% Similarity=-0.010 Sum_probs=61.1
Q ss_pred CccEEEEEcCCccccHHHHHHHHccCCCCCCeEEee--cCCCC-----------------ccc----ccccccccccCcc
Q 021089 174 GVRWFVFGDDDTVFFVDNLVKTLSKYDDDRWFYVGS--NSEGY-----------------EQN----AKHSFGMAFGGGG 230 (317)
Q Consensus 174 ~~kWf~~~DDDTyv~~~nL~~~L~~~d~~~p~yiG~--~~e~~-----------------~~~----~~~g~~~~~GGaG 230 (317)
+++-+++.|-|+.+-++.|. +++.+.......-+. +.... ... ...+-..+.+|.|
T Consensus 155 ~~~vvvi~DAD~~v~pd~L~-~~~~l~~~~~~VQ~p~~p~~~~~~~~~~~~~~~EFa~~~~~~~~~~~~lgg~~~l~G~~ 233 (727)
T PRK11234 155 AFAGFILHDAEDVISPMELR-LFNYLVERKDLIQIPVYPFEREWTHFTSGTYIDEFAELHGKDVPVREALAGQVPSAGVG 233 (727)
T ss_pred cccEEEEEcCCCCCChhHHH-HHHhhcCCCCeEeecccCCCccHHHHHHHHHHHHHHHHhhhhhHHHHHcCCCcccCCce
Confidence 56778999999999999997 444443322221110 11100 000 1121134678999
Q ss_pred ccccHHHHHHHHHhhhhhhhhcccCCcchHHHHHHHHHhCCcceeCC
Q 021089 231 FAISHSLARVLAGALDSCLMRYAHLYGSDARVFSCLVELGVGLTPEP 277 (317)
Q Consensus 231 ~vlSr~ll~~L~~~~d~C~~~~~~~~~~D~~lg~Cl~~lGV~lt~~~ 277 (317)
.++||.+++.+.+.-+.+. ...+.-.||..+|.-+...|....-.|
T Consensus 234 ~af~Rr~l~al~~~ggg~~-~~~~~lTED~dlg~rL~~~G~~v~f~~ 279 (727)
T PRK11234 234 TCFSRRAVTALLEDGDGIA-FDVQSLTEDYDIGFRLKEKGMREIFVR 279 (727)
T ss_pred EEEecccHHHHHHhcCCCC-cCCCcchHHHHHHHHHHHCCCEEEEcc
Confidence 9999998777766432221 112344699999999999888765443
No 72
>KOG4748 consensus Subunit of Golgi mannosyltransferase complex [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis]
Probab=38.53 E-value=37 Score=33.41 Aligned_cols=55 Identities=18% Similarity=0.253 Sum_probs=40.3
Q ss_pred CchhhHHHHHHHHHHHHhccccCCccEEEEEcCCcccc------------HHHHHHHHccCCCCCCeEEeec
Q 021089 151 GLRSAVRVARVVKEAVDLTDEKAGVRWFVFGDDDTVFF------------VDNLVKTLSKYDDDRWFYVGSN 210 (317)
Q Consensus 151 g~~~a~r~~~~l~~~~~~~~~~~~~kWf~~~DDDTyv~------------~~nL~~~L~~~d~~~p~yiG~~ 210 (317)
+.+..|...++++.+.+.+ |+++|+=.+|-|+.+- .+||...|-+ | +++.+.|..
T Consensus 155 e~~~~W~KiP~Ir~tM~ky---P~AeWIWWlD~DAlimn~~lsL~~~ilk~~~L~~~l~~-n-d~~~~~~~n 221 (364)
T KOG4748|consen 155 ELPGVWAKLPAIRQTMLKY---PDAEWIWWLDQDALIMNPDLSLQDHILKPENLVTHLLR-N-DQKSINPLN 221 (364)
T ss_pred cccchhHHhHHHHHHHHHC---CCCcEEEEecccchhhCcccchhHHhcCHHHHHHhhcc-c-cccccccCC
Confidence 5667898889999988876 9999999999999875 2334443322 1 567777766
No 73
>PF05060 MGAT2: N-acetylglucosaminyltransferase II (MGAT2); InterPro: IPR007754 N-acetylglucosaminyltransferase II (2.4.1.143 from EC) is a Golgi resident enzyme that catalyzes an essential step in the biosynthetic pathway leading from high mannose to complex N-linked oligosaccharides []. Mutations in the MGAT2 gene lead to a congenital disorder of glycosylation (CDG IIa). CDG IIa patients have an increased bleeding tendency, unrelated to coagulation factors []. Synonym(s): UDP-N-acetyl-D-glucosamine:alpha-6-D-mannoside beta-1,2-N- acetylglucosaminyltransferase II, GnT II/MGAT2.; GO: 0008455 alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0005795 Golgi stack, 0016021 integral to membrane
Probab=35.49 E-value=2.7e+02 Score=27.44 Aligned_cols=104 Identities=17% Similarity=0.192 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHhccccCCccEEEEEcCCccccHHHHHH---HHc---c-CCCCCCeEEeecCCCCc-c---c--cccccc
Q 021089 157 RVARVVKEAVDLTDEKAGVRWFVFGDDDTVFFVDNLVK---TLS---K-YDDDRWFYVGSNSEGYE-Q---N--AKHSFG 223 (317)
Q Consensus 157 r~~~~l~~~~~~~~~~~~~kWf~~~DDDTyv~~~nL~~---~L~---~-~d~~~p~yiG~~~e~~~-~---~--~~~g~~ 223 (317)
++-++...+... +...-|++|.|+|-|+.++-|.- +.+ + ...-.-+-+|....... . . ...+..
T Consensus 152 k~n~Vf~~l~~~---~~~~g~v~fLEEDhyv~pD~l~~l~~~~~~~~~~cp~c~~~sLG~y~~~~~~~~~~~~v~~~~W~ 228 (356)
T PF05060_consen 152 KLNFVFDGLEET---RNHNGWVLFLEEDHYVAPDFLHVLRLMIKLKKSECPDCDILSLGTYDKSNGYQSDPNKVEVTPWI 228 (356)
T ss_pred HHHHHHHhhhhh---ccCCceEEEEecccccchhHHHHHHHHHHHhhhcCCCCCEEeccCCccccccccccceeeeeccc
Confidence 443455544222 25578999999999999766442 221 2 12234456777652111 0 0 000000
Q ss_pred ccccCccccccHHHHHHHHHhhh-hhhhhcccCCcchHHHHHHH
Q 021089 224 MAFGGGGFAISHSLARVLAGALD-SCLMRYAHLYGSDARVFSCL 266 (317)
Q Consensus 224 ~~~GGaG~vlSr~ll~~L~~~~d-~C~~~~~~~~~~D~~lg~Cl 266 (317)
-..---|++++|.+-++|....+ -|. | +++-.|..|....
T Consensus 229 SskHNmGmAfNRs~W~kI~~ca~~FC~--y-DDYNWDwSL~~ls 269 (356)
T PF05060_consen 229 SSKHNMGMAFNRSTWNKIKSCADEFCT--Y-DDYNWDWSLQHLS 269 (356)
T ss_pred cccccceeEecHHHHHHHHHHHHHhCC--C-CCCCchHHHHHHH
Confidence 00114689999999999987543 363 2 3444577764433
No 74
>PLN03183 acetylglucosaminyltransferase family protein; Provisional
Probab=35.12 E-value=4.9e+02 Score=26.27 Aligned_cols=158 Identities=14% Similarity=0.218 Sum_probs=84.8
Q ss_pred CCCCCcEEEEEecCCCchHHHHHHHHHHhCCCCCeEEEEecCCCCCCC------C-----CCCCCCceeecCCCCCCccC
Q 021089 79 PLTRRHLLFSIASSSSSWPRRRSYVRLWYSPNSTRALTFLDRAADSSS------A-----GDPSLPRIVISADTSKFPFT 147 (317)
Q Consensus 79 ~~~~~~I~f~I~Ts~~~~~~R~~~i~~ww~~~~~~~~vfsD~~~~~~~------~-----~~~~lp~v~i~~d~~~~~y~ 147 (317)
.....++.+.|.-+....+.-...++.-+.+ ...++|=.|...+... . +....++|.+........|
T Consensus 74 ~~~~~r~AYLI~~h~~d~~~l~RLL~aLYhp-rN~y~IHlDkKS~~~er~~l~~~v~~~~~~~~~~NV~vl~k~~~V~W- 151 (421)
T PLN03183 74 QDKLPRFAYLVSGSKGDLEKLWRTLRALYHP-RNQYVVHLDLESPAEERLELASRVENDPMFSKVGNVYMITKANLVTY- 151 (421)
T ss_pred CCCCCeEEEEEEecCCcHHHHHHHHHHhcCC-CceEEEEecCCCChHHHHHHHHHhhccchhhccCcEEEEecceeecc-
Confidence 3457788888887766554333566666655 4556666787643210 0 1123456655332211122
Q ss_pred CCCCchhhH-HHHHHHHHHHHhccccCCccEEEEEcCCccccH--HHHHHHHccCCCCCCeEEeecCCC-----------
Q 021089 148 FPKGLRSAV-RVARVVKEAVDLTDEKAGVRWFVFGDDDTVFFV--DNLVKTLSKYDDDRWFYVGSNSEG----------- 213 (317)
Q Consensus 148 ~~~g~~~a~-r~~~~l~~~~~~~~~~~~~kWf~~~DDDTyv~~--~nL~~~L~~~d~~~p~yiG~~~e~----------- 213 (317)
+|. +.+ ..++.+..+.+.. .+.|||+..-..-|-.. +.|+..+...+.+ .-||...+..
T Consensus 152 --GG~-S~V~AtL~~m~~LL~~~---~~WDyfinLSGsDyPLkTqdelI~~F~~~nr~-~NFI~~~s~~~wk~~~r~~~~ 224 (421)
T PLN03183 152 --RGP-TMVANTLHACAILLKRS---KDWDWFINLSASDYPLVTQDDLIHTFSTLDRN-LNFIEHTSQLGWKEEKRAMPL 224 (421)
T ss_pred --CCh-HHHHHHHHHHHHHHhhC---CCCCEEEEccCCcccccCHHHHHHHHHhCCCC-ceeeecccccccchhhhcceE
Confidence 122 222 2235566666543 78999999998888874 4455544332222 1233222100
Q ss_pred --------------Cc----ccccccccccccCccccccHHHHHHHHHhh
Q 021089 214 --------------YE----QNAKHSFGMAFGGGGFAISHSLARVLAGAL 245 (317)
Q Consensus 214 --------------~~----~~~~~g~~~~~GGaG~vlSr~ll~~L~~~~ 245 (317)
.. .....++.+..|.+=++|||+.++-+....
T Consensus 225 i~~pgl~~~~ks~~~~~~~~R~~P~~~~lf~GS~W~sLSR~fvey~l~~~ 274 (421)
T PLN03183 225 IIDPGLYSTNKSDIYWVTPRRSLPTAFKLFTGSAWMVLSRSFVEYCIWGW 274 (421)
T ss_pred EecCceeecccchhhhhhhhccCCccccccCCCceEEecHHHHHHHHhcc
Confidence 00 011223445677778899999999988543
No 75
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=33.67 E-value=1.3e+02 Score=27.95 Aligned_cols=97 Identities=25% Similarity=0.221 Sum_probs=59.5
Q ss_pred CCccEEEEEcCCccccHHHHHHHHc---cCCCCC-CeEEeecC---CCC-------c-----c----------ccccccc
Q 021089 173 AGVRWFVFGDDDTVFFVDNLVKTLS---KYDDDR-WFYVGSNS---EGY-------E-----Q----------NAKHSFG 223 (317)
Q Consensus 173 ~~~kWf~~~DDDTyv~~~nL~~~L~---~~d~~~-p~yiG~~~---e~~-------~-----~----------~~~~g~~ 223 (317)
-+.+|++|+|.|.++..+.+.+.+. +.+... ..+++... +.. . . ...+++
T Consensus 87 A~~d~l~flD~D~i~~~~~i~~~~~~~~~l~~~~~~~~~~p~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 165 (281)
T PF10111_consen 87 ARGDYLIFLDADCIPSPDFIEKLLNHVKKLDKNPNAFLVYPCLYLSEEGSEKFYSQFKNLWDHEFLESFISGKNSLWEF- 165 (281)
T ss_pred cCCCEEEEEcCCeeeCHHHHHHHHHHHHHHhcCCCceEEEeeeeccchhhHHHhhcchhcchHHHHHHHhhcccccccc-
Confidence 4789999999999999988888888 554332 33332211 000 0 0 011121
Q ss_pred ccccCccccccHHHHHHHHHhhhhhhhhcccCCcchHHHHHHHHHhCCcce
Q 021089 224 MAFGGGGFAISHSLARVLAGALDSCLMRYAHLYGSDARVFSCLVELGVGLT 274 (317)
Q Consensus 224 ~~~GGaG~vlSr~ll~~L~~~~d~C~~~~~~~~~~D~~lg~Cl~~lGV~lt 274 (317)
.+..|+-+++++....++... |+ .+...-+||..++.=|...|..+.
T Consensus 166 ~~~~s~~~~i~r~~f~~iGGf-DE---~f~G~G~ED~D~~~RL~~~~~~~~ 212 (281)
T PF10111_consen 166 IAFASSCFLINREDFLEIGGF-DE---RFRGWGYEDIDFGYRLKKAGYKFK 212 (281)
T ss_pred ccccceEEEEEHHHHHHhCCC-Cc---cccCCCcchHHHHHHHHHcCCcEe
Confidence 233457788999988887653 22 222222499999888888876653
No 76
>PF12433 PV_NSP1: Parvovirus non-structural protein 1 ; InterPro: IPR021076 Parvoviruses are some of the smallest viruses containing linear, non-segmented single-stranded DNA genomes, with an average genome size of 5000 nucleotides. Parvoviruses have been described that infect a wide range of invertebrates and vertebrates and are well known for causing enteric disease in mammals. Genomes contains two large ORFs: NS1 and VP1; other ORFs are found in some sub-types and different gene products can arise from splice variants and the use of different start codons []. This entry represents a domain of the parvovirus non-capsid protein 1. It is found immediately N-terminal to the helicase domain and its function is unknown. Parvoviral NS1 regulates host gene expression through histone acetylation [].
Probab=30.97 E-value=37 Score=25.83 Aligned_cols=25 Identities=20% Similarity=0.367 Sum_probs=19.9
Q ss_pred ccccccccccCcccccc------HHHHHHHHH
Q 021089 218 AKHSFGMAFGGGGFAIS------HSLARVLAG 243 (317)
Q Consensus 218 ~~~g~~~~~GGaG~vlS------r~ll~~L~~ 243 (317)
...|| |+.|-||++.. |.++++|.-
T Consensus 37 ~mdGY-y~agngG~i~Nfl~~~eR~~v~kmY~ 67 (80)
T PF12433_consen 37 GMDGY-YAAGNGGWIDNFLKEKERKLVSKMYT 67 (80)
T ss_pred CCCce-EEcCCCceeechhhhHHHHHHHHHHH
Confidence 56787 99999999998 677777653
No 77
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=30.34 E-value=44 Score=30.10 Aligned_cols=103 Identities=17% Similarity=0.095 Sum_probs=60.5
Q ss_pred CCccEEEEEcCCccccHHHHHHHHccCCCCCC--eEEeecC---C--CC-c--c--------------cccccccccccC
Q 021089 173 AGVRWFVFGDDDTVFFVDNLVKTLSKYDDDRW--FYVGSNS---E--GY-E--Q--------------NAKHSFGMAFGG 228 (317)
Q Consensus 173 ~~~kWf~~~DDDTyv~~~nL~~~L~~~d~~~p--~yiG~~~---e--~~-~--~--------------~~~~g~~~~~GG 228 (317)
.+.+|++++|.||.+..+.|.+++..++.+.. ..-|... . .. . + ....|...+..|
T Consensus 72 a~~e~i~~~DaD~~~~~~~l~~l~~~~~~~p~vg~v~g~~~~~~~~~~~~~~~q~~ey~~~~~~~~~~~s~~g~~~~~~G 151 (244)
T cd04190 72 DDPEFILLVDADTKFDPDSIVQLYKAMDKDPEIGGVCGEIHPMGKKQGPLVMYQVFEYAISHWLDKAFESVFGFVTCLPG 151 (244)
T ss_pred CCCCEEEEECCCCcCCHhHHHHHHHHHHhCCCEEEEEeeeEEcCCcchhHHHhHheehhhhhhhcccHHHcCCceEECCC
Confidence 57899999999999999998888887743222 2333321 0 00 0 0 011233345568
Q ss_pred ccccccHHHHHHHHHhhhh--h-------hh-h---cccCCcchHHHHHHHHHhCCccee
Q 021089 229 GGFAISHSLARVLAGALDS--C-------LM-R---YAHLYGSDARVFSCLVELGVGLTP 275 (317)
Q Consensus 229 aG~vlSr~ll~~L~~~~d~--C-------~~-~---~~~~~~~D~~lg~Cl~~lGV~lt~ 275 (317)
++.++.+++++........ | .. . .....+||..++.-+...|.....
T Consensus 152 ~~~~~R~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ED~~l~~~l~~~G~~~~~ 211 (244)
T cd04190 152 CFSMYRIEALKGDNGGKGPLLDYAYLTNTVDSLHKKNNLDLGEDRILCTLLLKAGPKRKY 211 (244)
T ss_pred ceEEEEehhhcCCccccccchhhccccCcccchHHHHHHhHhcccceeHHHhccCCccEE
Confidence 8888888888776332110 0 00 0 001246899888888777765544
No 78
>PF05212 DUF707: Protein of unknown function (DUF707); InterPro: IPR007877 This family consists of uncharacterised proteins from Arabidopsis thaliana.
Probab=29.43 E-value=4.3e+02 Score=25.36 Aligned_cols=178 Identities=16% Similarity=0.077 Sum_probs=87.7
Q ss_pred CCCCCCcEEEEEecCCCchHHHH-HHHHHHhCCCCCeEEEEecCCCCCCCCCCCCCCceeecCCCCCCccCCCCCchhhH
Q 021089 78 NPLTRRHLLFSIASSSSSWPRRR-SYVRLWYSPNSTRALTFLDRAADSSSAGDPSLPRIVISADTSKFPFTFPKGLRSAV 156 (317)
Q Consensus 78 ~~~~~~~I~f~I~Ts~~~~~~R~-~~i~~ww~~~~~~~~vfsD~~~~~~~~~~~~lp~v~i~~d~~~~~y~~~~g~~~a~ 156 (317)
......+-++++.-+.+. ...+ ..++.+ ..+..=++|.-|...++=++..-+-..+.++.... ..+-.+.
T Consensus 36 ~~~~~~k~Lla~~VG~kq-k~~vd~~v~Kf-~~nF~i~LfhYDg~vd~w~~~~ws~~aiHv~~~kq-------tKww~ak 106 (294)
T PF05212_consen 36 DLPKKPKYLLAMTVGIKQ-KDNVDAIVKKF-SDNFDIMLFHYDGRVDEWDDFEWSDRAIHVSARKQ-------TKWWFAK 106 (294)
T ss_pred cccCCCceEEEEEecHHH-HhhhhHHHhhh-ccCceEEEEEecCCcCchhhcccccceEEEEeccc-------eEEeehh
Confidence 345556778888777765 2344 455666 55555555555665433111111222334432110 1111233
Q ss_pred HHHHHHHHHHHhccccCCccEEEEEcCCcccc---HHHHHHHHccC--CCCCCeEEeecCCCCc----cc----------
Q 021089 157 RVARVVKEAVDLTDEKAGVRWFVFGDDDTVFF---VDNLVKTLSKY--DDDRWFYVGSNSEGYE----QN---------- 217 (317)
Q Consensus 157 r~~~~l~~~~~~~~~~~~~kWf~~~DDDTyv~---~~nL~~~L~~~--d~~~p~yiG~~~e~~~----~~---------- 217 (317)
|.. =.++. ..|+++++-|||.=+. ++.+.+...++ +-++|-.=...++... +.
T Consensus 107 rfL--HPdiv------~~YdYiflwDeDL~vd~f~~~ry~~Ivk~~gLeISQPALd~~~~~~~~~iT~R~~~~~vhr~~~ 178 (294)
T PF05212_consen 107 RFL--HPDIV------APYDYIFLWDEDLGVDHFDINRYFEIVKKEGLEISQPALDPDSSEIHHPITKRRPDSEVHRKTR 178 (294)
T ss_pred hhc--Chhhh------ccceeEEecCCccCcCcCCHHHHHHHHHHhCCcccCcccCCCCceeeeeEEeecCCceeEeccC
Confidence 321 11121 5799999999998876 55555555544 3444433321110000 00
Q ss_pred ------cccccccccc---CccccccHHHHHHHHHhhhhhhhhcccCCcchHHHHHHHHH--hCCccee
Q 021089 218 ------AKHSFGMAFG---GGGFAISHSLARVLAGALDSCLMRYAHLYGSDARVFSCLVE--LGVGLTP 275 (317)
Q Consensus 218 ------~~~g~~~~~G---GaG~vlSr~ll~~L~~~~d~C~~~~~~~~~~D~~lg~Cl~~--lGV~lt~ 275 (317)
..-..+.|.| .-.=|+||.+.+-.-....+ ...+-||=|..++.|+.. -+|.+..
T Consensus 179 ~~~~~~~~~~~ppct~fVEiMAPVFSr~Awrcvw~miqN---DLvhGWGLDf~~~~c~~~~~~kiGVVD 244 (294)
T PF05212_consen 179 GGPRCCDDSTGPPCTGFVEIMAPVFSRAAWRCVWHMIQN---DLVHGWGLDFKWGYCAGDRHKKIGVVD 244 (294)
T ss_pred CCCCcCCCCCCCCcceEEEEecceechHHHHHHHhcccC---CCccccchhhhHHHHhccccccEEEEe
Confidence 0000011111 11246999999877664321 123568889999999953 3444433
No 79
>KOG3832 consensus Predicted amino acid transporter [General function prediction only]
Probab=27.72 E-value=53 Score=30.26 Aligned_cols=52 Identities=33% Similarity=0.404 Sum_probs=32.7
Q ss_pred chhhhhhccccccccCCCCCc-cc----ccCCCCCCChhhHHHHHH-HHHHHHHHHHHHhc
Q 021089 6 NESRRRKRIISFLQNHSSFSP-KI----KMMPSRTLTPSALKNSIL-LFSFLLIIYLFFYY 60 (317)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~ 60 (317)
|-.|..|||+.|.||..|-.| |+ -||.--|. -+-...+ ++-||+|+|+|=++
T Consensus 103 ~yeraekrpilsvqrrgspnpfeisdkvemgemasm---ffnkvgln~fyf~iiiylfgdl 160 (319)
T KOG3832|consen 103 GYERAEKRPILSVQRRGSPNPFEISDKVEMGEMASM---FFNKVGLNFFYFAIIIYLFGDL 160 (319)
T ss_pred CchhcccCCcceecccCCCCcceeehhhhHHHHHHH---HHHhhhHHHHHHHHHHHHhhhh
Confidence 556788999999999988666 11 12221111 1222233 67789999998774
No 80
>PHA02688 ORF059 IMV protein VP55; Provisional
Probab=27.71 E-value=1.6e+02 Score=28.62 Aligned_cols=74 Identities=15% Similarity=0.179 Sum_probs=42.1
Q ss_pred ccCCccEEEEEcCCcccc-HHHHHHHHccCCCC-------CCeEEeecCCCC-ccc-------ccccccccccCcccccc
Q 021089 171 EKAGVRWFVFGDDDTVFF-VDNLVKTLSKYDDD-------RWFYVGSNSEGY-EQN-------AKHSFGMAFGGGGFAIS 234 (317)
Q Consensus 171 ~~~~~kWf~~~DDDTyv~-~~nL~~~L~~~d~~-------~p~yiG~~~e~~-~~~-------~~~g~~~~~GGaG~vlS 234 (317)
+.++.++++.+|||+.+. +..+...+...-.+ ...|+|+....- .+. -.-|| ...=++|++.
T Consensus 113 k~~~~~yivVlEDDnTi~~~~~~~~~I~~M~~n~idilQLre~~~~~~~~~~~~~~~~~~~~~Y~ggy--dvSLsAYIIr 190 (323)
T PHA02688 113 KDKEDEYIVVVEDDNTLRDITTLHPIIKAMKEKNIDILQLRETLHNNNVRTLLNQEGNPALYSYTGGY--DVSLSAYIIR 190 (323)
T ss_pred cccCCCeEEEEcCCCcccccHHHHHHHHHHHhcCeEEEEeehhhhCCcccccccCCCCcceEEecCCc--ceeeEEEEEe
Confidence 357799999999999998 33343333322111 123334432110 000 11233 2233679999
Q ss_pred HHHHHHHHHhhh
Q 021089 235 HSLARVLAGALD 246 (317)
Q Consensus 235 r~ll~~L~~~~d 246 (317)
.+.+++|....-
T Consensus 191 ~~~a~kl~~~~i 202 (323)
T PHA02688 191 VSTAKKLYDEII 202 (323)
T ss_pred HHHHHHHHHHHH
Confidence 999999998754
No 81
>cd02515 Glyco_transf_6 Glycosyltransferase family 6 comprises enzymes responsible for the production of the human ABO blood group antigens. Glycosyltransferase family 6, GT_6, comprises enzymes with three known activities: alpha-1,3-galactosyltransferase, alpha-1,3 N-acetylgalactosaminyltransferase, and alpha-galactosyltransferase. UDP-galactose:beta-galactosyl alpha-1,3-galactosyltransferase (alpha3GT) catalyzes the transfer of galactose from UDP-alpha-d-galactose into an alpha-1,3 linkage with beta-galactosyl groups in glycoconjugates. The enzyme exists in most mammalian species but is absent from humans, apes, and old world monkeys as a result of the mutational inactivation of the gene. The alpha-1,3 N-acetylgalactosaminyltransferase and alpha-galactosyltransferase are responsible for the production of the human ABO blood group antigens. A N-acetylgalactosaminyltransferases use a UDP-GalNAc donor to convert the H-antigen acceptor to the A antigen, whereas a galactosyltransferase use
Probab=27.22 E-value=5.5e+02 Score=24.39 Aligned_cols=120 Identities=17% Similarity=0.160 Sum_probs=57.8
Q ss_pred CCCCcEEEEEecCCCchHHHHHHHHHHhCC-CCCeEEEEecCCCCCCCCCC-CCCCceee--cCCCCCCccCCCCCchhh
Q 021089 80 LTRRHLLFSIASSSSSWPRRRSYVRLWYSP-NSTRALTFLDRAADSSSAGD-PSLPRIVI--SADTSKFPFTFPKGLRSA 155 (317)
Q Consensus 80 ~~~~~I~f~I~Ts~~~~~~R~~~i~~ww~~-~~~~~~vfsD~~~~~~~~~~-~~lp~v~i--~~d~~~~~y~~~~g~~~a 155 (317)
.+.-=.+|++.--...++....-.+.-+-. ..-..+||+|..... .++. ....++.+ .....+ ++..+-
T Consensus 34 ~tIgl~vfatGkY~~f~~~F~~SAEk~Fm~g~~v~YyVFTD~~~~~-p~v~lg~~r~~~V~~v~~~~~------W~~~sl 106 (271)
T cd02515 34 ITIGLTVFAVGKYTEFLERFLESAEKHFMVGYRVIYYIFTDKPAAV-PEVELGPGRRLTVLKIAEESR------WQDISM 106 (271)
T ss_pred CEEEEEEEEeccHHHHHHHHHHHHHHhccCCCeeEEEEEeCCcccC-cccccCCCceeEEEEeccccC------CcHHHH
Confidence 333334444444444555555555555443 234777889976321 0100 11112222 111111 122233
Q ss_pred HHHHHHHHHHHHhccccCCccEEEEEcCCcccc----HHHHHHHHccCCCCCCeEEeecC
Q 021089 156 VRVARVVKEAVDLTDEKAGVRWFVFGDDDTVFF----VDNLVKTLSKYDDDRWFYVGSNS 211 (317)
Q Consensus 156 ~r~~~~l~~~~~~~~~~~~~kWf~~~DDDTyv~----~~nL~~~L~~~d~~~p~yiG~~~ 211 (317)
.|+..+.+..-+.. ..++|+.|++|-|+-+. ++-|-++++. -.|.|.+.+.
T Consensus 107 ~Rm~~~~~~~~~~~--~~e~DYlF~~dvd~~F~~~ig~E~Lg~lva~---lHp~~y~~~~ 161 (271)
T cd02515 107 RRMKTLADHIADRI--GHEVDYLFCMDVDMVFQGPFGVETLGDSVAQ---LHPWWYGKPR 161 (271)
T ss_pred HHHHHHHHHHHHhh--cccCCEEEEeeCCceEeecCCHHHhhhhhee---cChhhhcCCC
Confidence 44433333333322 26899999999999887 4555444443 3455666543
No 82
>PLN02893 Cellulose synthase-like protein
Probab=25.42 E-value=2.9e+02 Score=29.99 Aligned_cols=30 Identities=13% Similarity=0.026 Sum_probs=23.6
Q ss_pred CCccEEEEEcCCcccc-HHHHHHHHccC-CCC
Q 021089 173 AGVRWFVFGDDDTVFF-VDNLVKTLSKY-DDD 202 (317)
Q Consensus 173 ~~~kWf~~~DDDTyv~-~~nL~~~L~~~-d~~ 202 (317)
.+.+.++..|-|.|.+ .+.|++.+--+ |++
T Consensus 297 TngpfIl~lDcD~y~n~p~~l~~amcff~Dp~ 328 (734)
T PLN02893 297 TNAPIILTLDCDMYSNDPQTPLRALCYLLDPS 328 (734)
T ss_pred CCCCEEEEecCCcCCCchhHHHHHHHHhcCCC
Confidence 6799999999999986 67788877533 553
No 83
>PF14071 YlbD_coat: Putative coat protein
Probab=25.39 E-value=12 Score=31.27 Aligned_cols=17 Identities=24% Similarity=0.761 Sum_probs=13.5
Q ss_pred ccEEEEEcCCccccHHH
Q 021089 175 VRWFVFGDDDTVFFVDN 191 (317)
Q Consensus 175 ~kWf~~~DDDTyv~~~n 191 (317)
-+||++++||-++....
T Consensus 29 EeW~LlGEdD~~W~~Yk 45 (124)
T PF14071_consen 29 EEWYLLGEDDPIWDPYK 45 (124)
T ss_pred HHHHHhCCCcchHHHhh
Confidence 37999999999877554
No 84
>PF09258 Glyco_transf_64: Glycosyl transferase family 64 domain; InterPro: IPR015338 Members of this entry catalyse the transfer reaction of N-acetylglucosamine and N-acetylgalactosamine from the respective UDP-sugars to the non-reducing end of [glucuronic acid]beta 1-3[galactose]beta 1-O-naphthalenemethanol, an acceptor substrate analogue of the natural common linker of various glycosylaminoglycans. They are also required for the biosynthesis of heparan-sulphate []. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0031227 intrinsic to endoplasmic reticulum membrane; PDB: 1ON6_B 1OMZ_B 1OMX_B 1ON8_B.
Probab=23.26 E-value=1.3e+02 Score=27.82 Aligned_cols=100 Identities=14% Similarity=0.113 Sum_probs=53.9
Q ss_pred CCccEEEEEcCCccccHHHHHHHHccCCCCCCeEEeecCCCCc------c-----cccccccccccCccccccHHHHHHH
Q 021089 173 AGVRWFVFGDDDTVFFVDNLVKTLSKYDDDRWFYVGSNSEGYE------Q-----NAKHSFGMAFGGGGFAISHSLARVL 241 (317)
Q Consensus 173 ~~~kWf~~~DDDTyv~~~nL~~~L~~~d~~~p~yiG~~~e~~~------~-----~~~~g~~~~~GGaG~vlSr~ll~~L 241 (317)
-+.+.++.+|||+.+..+.|....+..-....-.+|.....+. + .....|.+...|+ .++.+..+...
T Consensus 74 i~T~AVl~~DDDv~~~~~~l~faF~~W~~~pdrlVGf~~R~h~~~~~~~~~~Y~~~~~~~ySmvLt~a-af~h~~yl~~Y 152 (247)
T PF09258_consen 74 IETDAVLSLDDDVMLSCDELEFAFQVWREFPDRLVGFPPRSHSWDPSSGRWKYTSEWSNEYSMVLTGA-AFYHRYYLELY 152 (247)
T ss_dssp --SSEEEEEETTEEE-HHHHHHHHHHHCCSTTSEEES-EEEEEEE-ETTEEEEE-SSS--BSEE-TTE-EEEETHHHHHH
T ss_pred cCcceEEEecCCcccCHHHHHHHHHHHHhChhheeCCccceeecCCCccccccccCCCCcchhhhhhh-HhhcchHHHHH
Confidence 4689999999999999999987776655556678887642220 0 1122345566555 45555555544
Q ss_pred HHhhhhhhhhcc--cCCcchHHHHHHHHH-hCCcc
Q 021089 242 AGALDSCLMRYA--HLYGSDARVFSCLVE-LGVGL 273 (317)
Q Consensus 242 ~~~~d~C~~~~~--~~~~~D~~lg~Cl~~-lGV~l 273 (317)
...+..-...+- ...+||+.+-.-+++ .|-+.
T Consensus 153 ~~~~p~~~r~~Vd~~~NCEDI~mNflvs~~T~~pP 187 (247)
T PF09258_consen 153 THWLPASIREYVDEHFNCEDIAMNFLVSNLTGKPP 187 (247)
T ss_dssp HT-S-HHHHHHHHHHTS-HHHHHHHHHHHHHSS-S
T ss_pred hcCcHHHHHHHHhccCCHHHHHHHHHHHHhccCCC
Confidence 432111000110 123699999988876 45443
Done!