BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021090
(317 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 11/63 (17%)
Query: 209 YRCEKCKKAFRSYHALGGHKKVCETNINAGTKVAADEKIFECPFCYKVFGSGQALGGHKR 268
Y+C +C K+F E N++ + EK ++CP C K F AL H+R
Sbjct: 134 YKCPECGKSFSR-----------EDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQR 182
Query: 269 SHL 271
+H
Sbjct: 183 THT 185
Score = 31.2 bits (69), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 11/63 (17%)
Query: 209 YRCEKCKKAFRSYHALGGHKKVCETNINAGTKVAADEKIFECPFCYKVFGSGQALGGHKR 268
Y+C +C K+F N+ A + EK + CP C K F L H+R
Sbjct: 78 YKCPECGKSFSQ-----------RANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQR 126
Query: 269 SHL 271
+H
Sbjct: 127 THT 129
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 11/63 (17%)
Query: 209 YRCEKCKKAFRSYHALGGHKKVCETNINAGTKVAADEKIFECPFCYKVFGSGQALGGHKR 268
Y+C +C K+F L H++ EK ++CP C K F L H+R
Sbjct: 50 YKCPECGKSFSDKKDLTRHQRT-----------HTGEKPYKCPECGKSFSQRANLRAHQR 98
Query: 269 SHL 271
+H
Sbjct: 99 THT 101
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 11/63 (17%)
Query: 209 YRCEKCKKAFRSYHALGGHKKVCETNINAGTKVAADEKIFECPFCYKVFGSGQALGGHKR 268
Y C +C K+F L H++ EK ++CP C K F + L H+R
Sbjct: 22 YACPECGKSFSRSDHLAEHQRT-----------HTGEKPYKCPECGKSFSDKKDLTRHQR 70
Query: 269 SHL 271
+H
Sbjct: 71 THT 73
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 11/63 (17%)
Query: 209 YRCEKCKKAFRSYHALGGHKKVCETNINAGTKVAADEKIFECPFCYKVFGSGQALGGHKR 268
Y C +C K+F L H++ EK ++CP C K F L H+R
Sbjct: 106 YACPECGKSFSQLAHLRAHQRT-----------HTGEKPYKCPECGKSFSREDNLHTHQR 154
Query: 269 SHL 271
+H
Sbjct: 155 THT 157
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
Length = 87
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 11/63 (17%)
Query: 209 YRCEKCKKAFRSYHALGGHKKVCETNINAGTKVAADEKIFECPFCYKVFGSGQALGGHKR 268
Y+C +C K+F +N+ + EK ++CP C K F L H+R
Sbjct: 5 YKCPECGKSFSQ-----------SSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQR 53
Query: 269 SHL 271
+H
Sbjct: 54 THT 56
Score = 31.2 bits (69), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 11/62 (17%)
Query: 209 YRCEKCKKAFRSYHALGGHKKVCETNINAGTKVAADEKIFECPFCYKVFGSGQALGGHKR 268
Y+C +C K+F L H++ EK ++CP C K F L H+R
Sbjct: 33 YKCPECGKSFSQSSDLQKHQRT-----------HTGEKPYKCPECGKSFSRSDHLSRHQR 81
Query: 269 SH 270
+H
Sbjct: 82 TH 83
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domain
Of Zinc Finger Protein 435
Length = 77
Score = 31.2 bits (69), Expect = 0.87, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 11/65 (16%)
Query: 206 RGKYRCEKCKKAFRSYHALGGHKKVCETNINAGTKVAADEKIFECPFCYKVFGSGQALGG 265
R +Y+C++C K+F L H+ + EK ++C C K F L G
Sbjct: 16 RRRYKCDECGKSFSHSSDLSKHR-----------RTHTGEKPYKCDECGKAFIQRSHLIG 64
Query: 266 HKRSH 270
H R H
Sbjct: 65 HHRVH 69
>pdb|2L1O|A Chain A, Zinc To Cadmium Replacement In The A. Thaliana Superman
Cys2his2 Zinc Finger Induces Structural Rearrangements
Of Typical Dna Base Determinant Positions
pdb|1NJQ|A Chain A, Nmr Structure Of The Single Qalggh Zinc Finger Domain
From Arabidopsis Thaliana Superman Protein
Length = 39
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 2 EKHKCKLCTRSFSNGRALGGHMKAH 26
+ C C R F + +ALGGHM H
Sbjct: 5 RSYTCSFCKREFRSAQALGGHMNVH 29
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 14/22 (63%)
Query: 209 YRCEKCKKAFRSYHALGGHKKV 230
Y C CK+ FRS ALGGH V
Sbjct: 7 YTCSFCKREFRSAQALGGHMNV 28
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 246 KIFECPFCYKVFGSGQALGGHKRSH 270
+ + C FC + F S QALGGH H
Sbjct: 5 RSYTCSFCKREFRSAQALGGHMNVH 29
>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
Human Zinc Finger Protein Zic 3
Length = 155
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 240 KVAADEKIFECPF--CYKVFGSGQALGGHKRSH 270
+V EK F CPF C K+F + L HKR+H
Sbjct: 83 RVHTGEKPFPCPFPGCGKIFARSENLKIHKRTH 115
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 11/63 (17%)
Query: 209 YRCEKCKKAFRSYHALGGHKKVCETNINAGTKVAADEKIFECPFCYKVFGSGQALGGHKR 268
Y C+ C KAFR L H+ + + EK F+C C K F + L HK
Sbjct: 46 YTCDICHKAFRRQDHLRDHRYI-----------HSKEKPFKCQECGKGFCQSRTLAVHKT 94
Query: 269 SHL 271
H+
Sbjct: 95 LHM 97
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In
Zinc Finger Protein 278
Length = 95
Score = 29.3 bits (64), Expect = 3.0, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 23/60 (38%), Gaps = 11/60 (18%)
Query: 211 CEKCKKAFRSYHALGGHKKVCETNINAGTKVAADEKIFECPFCYKVFGSGQALGGHKRSH 270
CE C K FR + L HK + EK + CP C F + H RSH
Sbjct: 10 CEICGKIFRDVYHLNRHKLS-----------HSGEKPYSCPVCGLRFKRKDRMSYHVRSH 58
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 29.3 bits (64), Expect = 3.2, Method: Composition-based stats.
Identities = 11/39 (28%), Positives = 21/39 (53%)
Query: 232 ETNINAGTKVAADEKIFECPFCYKVFGSGQALGGHKRSH 270
+TN++ ++ +K F+C C + F +L H R+H
Sbjct: 19 KTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTH 57
Score = 28.5 bits (62), Expect = 5.3, Method: Composition-based stats.
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 5 KCKLCTRSFSNGRALGGHMKAHLAAHPL 32
+C++C R+FS +L H++ H P
Sbjct: 36 QCRICMRNFSQQASLNAHIRTHTGEKPF 63
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Zinc Finger Protein 24
Length = 72
Score = 28.9 bits (63), Expect = 3.6, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 11/62 (17%)
Query: 209 YRCEKCKKAFRSYHALGGHKKVCETNINAGTKVAADEKIFECPFCYKVFGSGQALGGHKR 268
Y C +C KAF L H++V EK ++C C K F L H+R
Sbjct: 15 YGCVECGKAFSRSSILVQHQRV-----------HTGEKPYKCLECGKAFSQNSGLINHQR 63
Query: 269 SH 270
H
Sbjct: 64 IH 65
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 4 HKCKLCTRSFSNGRALGGHMKAHLAAHPLPPKT 36
HKC++C + FS L HM+ H P KT
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKT 41
>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
Length = 88
Score = 28.1 bits (61), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 1 MEKHKCKLCTRSFSNGRALGGHMKAHLAAHPL 32
M+ +C++C R+FS L H++ H P
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 32
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 28.1 bits (61), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 24/62 (38%), Gaps = 11/62 (17%)
Query: 209 YRCEKCKKAFRSYHALGGHKKVCETNINAGTKVAADEKIFECPFCYKVFGSGQALGGHKR 268
Y+C++C+ +FR L HK V EK + C C F L H R
Sbjct: 18 YKCDRCQASFRYKGNLASHK-----------TVHTGEKPYRCNICGAQFNRPANLKTHTR 66
Query: 269 SH 270
H
Sbjct: 67 IH 68
>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
Length = 90
Score = 28.1 bits (61), Expect = 7.3, Method: Composition-based stats.
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 232 ETNINAGTKVAADEKIFECPFCYKVFGSGQALGGHKRSH 270
+TN++ ++ +K F+C C + F L H R+H
Sbjct: 19 KTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTH 57
>pdb|2EOL|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
581- 609) Of Human Zinc Finger Protein 268
Length = 42
Score = 27.7 bits (60), Expect = 8.4, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 238 GTKVAADEKIFECPFCYKVFGSGQALGGHKRSH 270
G+ ++ EK +EC C K FG L H+R+H
Sbjct: 1 GSSGSSGEKPYECTDCGKAFGLKSQLIIHQRTH 33
>pdb|1A7I|A Chain A, Amino-Terminal Lim Domain From Quail Cysteine And Glycine-
Rich Protein, Nmr, Minimized Average Structure
Length = 81
Score = 27.7 bits (60), Expect = 8.9, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 7/65 (10%)
Query: 206 RGKYRCEKCKKAFRSYHALGGHKKVCETNINAGTKVAADEKIFECPFCY------KVFGS 259
R Y E+ + RS+H VC N+++ T D +++ C CY K +G
Sbjct: 15 RTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDAEVY-CKSCYGKKYGPKGYGY 73
Query: 260 GQALG 264
GQ G
Sbjct: 74 GQGAG 78
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,769,266
Number of Sequences: 62578
Number of extensions: 239743
Number of successful extensions: 744
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 648
Number of HSP's gapped (non-prelim): 94
length of query: 317
length of database: 14,973,337
effective HSP length: 99
effective length of query: 218
effective length of database: 8,778,115
effective search space: 1913629070
effective search space used: 1913629070
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)