BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 021091
         (317 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2CKD|A Chain A, Crystal Structure Of Ml2640 From Mycobacterium Leprae
 pdb|2CKD|B Chain B, Crystal Structure Of Ml2640 From Mycobacterium Leprae
 pdb|2UYO|A Chain A, Crystal Structure Of Ml2640c From Mycobacterium Leprae In
           An Hexagonal Crystal Form
 pdb|2UYQ|A Chain A, Crystal Structure Of Ml2640c From Mycobacterium Leprae In
           Complex With S-Adenosylmethionine
          Length = 310

 Score = 65.9 bits (159), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 82/183 (44%), Gaps = 26/183 (14%)

Query: 59  ETHRPEPLFVDPYAGCLVPPDVQMDLKKYSHHYCLTTKF--IDDKLLRTVNHM------- 109
           ET RP+ L  DPYA  LV       L +      +  K   ID +    V HM       
Sbjct: 28  ETDRPDALIRDPYAKLLVTNTGAGALWEAMLDPSMVAKVEAIDAEAAAMVEHMRSYQAVR 87

Query: 110 -------------DGLKQVVLLTDGMDTRPYRLNWPTSTIIFDISPERIFKISAEKLEGV 156
                        DG++Q V+L  G+D+R YRL+WPT T +++I   ++    +  L   
Sbjct: 88  TNFFDTYFNNAVIDGIRQFVILASGLDSRAYRLDWPTGTTVYEIDQPKVLAYKSTTLAEH 147

Query: 157 GAKIPRSCLFLHVPLE-SSNIQQALRAKGFNGNRPSVWAIQGLPVMTLASFEDVLLL-VG 214
           G  +  +     VP++   +   ALR+ GF+ +  + W  +GL +   A+ +D L   +G
Sbjct: 148 G--VTPTADRREVPIDLRQDWPPALRSAGFDPSARTAWLAEGLLMYLPATAQDGLFTEIG 205

Query: 215 SLA 217
            L+
Sbjct: 206 GLS 208


>pdb|3CQI|A Chain A, Crystal Structure Of L-Xylulose-5-Phosphate 3-Epimerase
           Ulae (Form B) Complex With Sulfate
 pdb|3CQI|B Chain B, Crystal Structure Of L-Xylulose-5-Phosphate 3-Epimerase
           Ulae (Form B) Complex With Sulfate
 pdb|3CQJ|A Chain A, Crystal Structure Of L-Xylulose-5-Phosphate 3-Epimerase
           Ulae (Form B) Complex With Zn2+
 pdb|3CQJ|B Chain B, Crystal Structure Of L-Xylulose-5-Phosphate 3-Epimerase
           Ulae (Form B) Complex With Zn2+
 pdb|3CQK|A Chain A, Crystal Structure Of L-xylulose-5-phosphate 3-epimerase
           Ulae (form B) Complex With Zn2+ And Sulfate
 pdb|3CQK|B Chain B, Crystal Structure Of L-xylulose-5-phosphate 3-epimerase
           Ulae (form B) Complex With Zn2+ And Sulfate
          Length = 295

 Score = 30.8 bits (68), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 25/99 (25%), Positives = 43/99 (43%), Gaps = 12/99 (12%)

Query: 111 GLKQVVLLTDGMDTRPYRLNWPTSTIIFDISPERIFKISAEKLEGVGAKIPRSCLFLHVP 170
           G   V +  D  D R  RL+W           +R+  ++A  +   G ++P  CL  H  
Sbjct: 43  GFDFVEMSVDETDERLSRLDWSRE--------QRLALVNA--IVETGVRVPSMCLSAHRR 92

Query: 171 LESSNIQQALRAKGFNGNRPSVWAIQ--GLPVMTLASFE 207
               +   A+RA+G    R ++   Q  G+ V+ LA ++
Sbjct: 93  FPLGSEDDAVRAQGLEIMRKAIQFAQDVGIRVIQLAGYD 131


>pdb|3CQH|A Chain A, Crystal Structure Of L-Xylulose-5-Phosphate 3-Epimerase
           Ulae From The Anaerobic L-Ascorbate Utilization Pathway
           Of Escherichia Coli
 pdb|3CQH|B Chain B, Crystal Structure Of L-Xylulose-5-Phosphate 3-Epimerase
           Ulae From The Anaerobic L-Ascorbate Utilization Pathway
           Of Escherichia Coli
          Length = 295

 Score = 30.4 bits (67), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 25/99 (25%), Positives = 42/99 (42%), Gaps = 12/99 (12%)

Query: 111 GLKQVVLLTDGMDTRPYRLNWPTSTIIFDISPERIFKISAEKLEGVGAKIPRSCLFLHVP 170
           G   V    D  D R  RL+W           +R+  ++A  +   G ++P  CL  H  
Sbjct: 43  GFDFVEXSVDETDERLSRLDWSRE--------QRLALVNA--IVETGVRVPSXCLSAHRR 92

Query: 171 LESSNIQQALRAKGFNGNRPSVWAIQ--GLPVMTLASFE 207
               +   A+RA+G    R ++   Q  G+ V+ LA ++
Sbjct: 93  FPLGSEDDAVRAQGLEIXRKAIQFAQDVGIRVIQLAGYD 131


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.137    0.412 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,076,958
Number of Sequences: 62578
Number of extensions: 359601
Number of successful extensions: 713
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 710
Number of HSP's gapped (non-prelim): 3
length of query: 317
length of database: 14,973,337
effective HSP length: 99
effective length of query: 218
effective length of database: 8,778,115
effective search space: 1913629070
effective search space used: 1913629070
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)