Query 021091
Match_columns 317
No_of_seqs 210 out of 1218
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 07:31:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021091.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021091hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3315 O-Methyltransferase in 100.0 2.8E-50 6E-55 382.5 22.3 240 35-276 4-279 (297)
2 TIGR00027 mthyl_TIGR00027 meth 100.0 1.4E-49 3.1E-54 371.4 22.1 224 46-272 1-260 (260)
3 PF04072 LCM: Leucine carboxyl 100.0 1E-40 2.3E-45 295.8 6.1 166 49-214 1-183 (183)
4 KOG2918 Carboxymethyl transfer 99.9 1.1E-24 2.4E-29 205.1 14.3 225 41-267 19-283 (335)
5 PF04672 Methyltransf_19: S-ad 97.8 0.00012 2.7E-09 69.0 10.2 128 96-228 54-191 (267)
6 PF12147 Methyltransf_20: Puta 95.8 0.34 7.3E-06 46.7 14.3 160 88-257 109-293 (311)
7 PF00891 Methyltransf_2: O-met 95.1 0.14 3.1E-06 46.7 9.2 116 90-227 79-200 (241)
8 TIGR03438 probable methyltrans 95.0 0.45 9.8E-06 45.4 12.8 153 63-227 18-177 (301)
9 TIGR02716 C20_methyl_CrtF C-20 93.4 0.91 2E-05 43.1 11.0 105 110-227 148-255 (306)
10 PRK14103 trans-aconitate 2-met 92.4 2.1 4.5E-05 39.5 11.7 195 90-313 10-238 (255)
11 PF12847 Methyltransf_18: Meth 92.4 0.53 1.2E-05 37.0 6.7 103 113-227 3-111 (112)
12 PTZ00098 phosphoethanolamine N 91.3 5.4 0.00012 37.3 13.2 132 112-257 53-197 (263)
13 PLN03075 nicotianamine synthas 90.9 1.6 3.5E-05 42.0 9.4 106 111-228 123-234 (296)
14 TIGR02021 BchM-ChlM magnesium 90.3 5.3 0.00012 35.8 11.8 133 112-258 56-202 (219)
15 PF13649 Methyltransf_25: Meth 90.2 1.3 2.7E-05 34.7 6.7 93 115-220 1-100 (101)
16 PRK11036 putative S-adenosyl-L 90.1 5 0.00011 37.0 11.7 101 112-225 45-147 (255)
17 TIGR03439 methyl_EasF probable 88.9 16 0.00035 35.6 14.6 154 63-228 31-200 (319)
18 TIGR00740 methyltransferase, p 88.4 4.1 8.8E-05 37.1 9.7 100 113-226 55-160 (239)
19 PRK15451 tRNA cmo(5)U34 methyl 87.1 5.1 0.00011 36.9 9.6 100 113-226 58-164 (247)
20 KOG1975 mRNA cap methyltransfe 85.6 7 0.00015 38.5 9.8 126 92-229 105-239 (389)
21 PRK11207 tellurite resistance 85.3 9.6 0.00021 33.8 10.1 97 113-223 32-130 (197)
22 TIGR00477 tehB tellurite resis 85.2 8.6 0.00019 34.1 9.8 100 113-227 32-134 (195)
23 PRK00121 trmB tRNA (guanine-N( 83.1 11 0.00025 33.6 9.7 129 112-258 41-177 (202)
24 PRK12335 tellurite resistance 82.6 12 0.00027 35.2 10.2 97 113-224 122-220 (287)
25 PRK08317 hypothetical protein; 82.4 34 0.00073 30.1 13.3 179 112-307 20-223 (241)
26 PRK00377 cbiT cobalt-precorrin 81.4 12 0.00026 33.2 9.1 125 113-261 42-169 (198)
27 KOG2361 Predicted methyltransf 81.3 4.5 9.7E-05 38.2 6.4 136 114-257 74-232 (264)
28 PRK15068 tRNA mo(5)U34 methylt 80.2 12 0.00026 36.2 9.3 112 102-226 114-225 (322)
29 PLN02781 Probable caffeoyl-CoA 79.1 22 0.00048 32.6 10.3 109 111-229 68-180 (234)
30 PF05401 NodS: Nodulation prot 79.1 5.1 0.00011 36.6 5.9 110 102-227 35-146 (201)
31 COG4106 Tam Trans-aconitate me 76.9 4.8 0.0001 37.5 5.1 119 90-232 11-134 (257)
32 PLN02244 tocopherol O-methyltr 75.9 19 0.00042 34.9 9.4 118 96-225 100-221 (340)
33 PF03848 TehB: Tellurite resis 75.7 13 0.00028 33.6 7.6 101 112-226 31-132 (192)
34 cd02440 AdoMet_MTases S-adenos 74.1 30 0.00066 24.9 9.0 99 115-226 2-103 (107)
35 PF03291 Pox_MCEL: mRNA cappin 73.8 5.5 0.00012 38.9 5.0 133 92-229 44-188 (331)
36 PRK01683 trans-aconitate 2-met 73.5 24 0.00052 32.2 9.0 116 91-228 13-131 (258)
37 PF02353 CMAS: Mycolic acid cy 71.6 15 0.00033 34.8 7.3 117 96-227 49-166 (273)
38 TIGR03587 Pse_Me-ase pseudamin 71.0 39 0.00084 30.4 9.5 109 96-227 32-143 (204)
39 PLN02336 phosphoethanolamine N 70.8 24 0.00052 35.6 9.0 100 113-225 39-140 (475)
40 PLN02366 spermidine synthase 70.3 37 0.00079 32.8 9.7 45 110-155 90-137 (308)
41 PLN02396 hexaprenyldihydroxybe 70.2 30 0.00064 33.7 9.1 123 93-228 107-236 (322)
42 KOG4300 Predicted methyltransf 69.9 35 0.00077 31.8 8.9 106 111-228 76-184 (252)
43 PRK06202 hypothetical protein; 67.9 57 0.0012 29.4 10.0 102 111-227 60-167 (232)
44 PLN02585 magnesium protoporphy 67.1 1.2E+02 0.0027 29.3 12.6 132 113-258 146-295 (315)
45 PRK07580 Mg-protoporphyrin IX 66.4 70 0.0015 28.3 10.2 98 112-224 64-163 (230)
46 PF10294 Methyltransf_16: Puta 65.4 23 0.0005 30.9 6.7 109 112-226 46-155 (173)
47 PLN02336 phosphoethanolamine N 65.0 1E+02 0.0022 31.0 12.2 131 112-257 267-409 (475)
48 PF08242 Methyltransf_12: Meth 64.9 2.9 6.4E-05 32.2 0.8 30 192-223 69-99 (99)
49 PLN02589 caffeoyl-CoA O-methyl 63.1 75 0.0016 29.7 10.0 111 111-230 79-193 (247)
50 PF03059 NAS: Nicotianamine sy 62.1 14 0.0003 35.3 5.0 106 113-228 122-231 (276)
51 PRK11873 arsM arsenite S-adeno 61.1 37 0.0008 31.4 7.6 100 113-225 79-181 (272)
52 TIGR00452 methyltransferase, p 59.2 55 0.0012 31.7 8.6 132 113-257 123-268 (314)
53 PRK00811 spermidine synthase; 59.1 81 0.0018 29.8 9.6 108 110-226 75-190 (283)
54 PF07091 FmrO: Ribosomal RNA m 58.8 14 0.00029 35.0 4.2 151 94-259 88-241 (251)
55 smart00828 PKS_MT Methyltransf 58.4 41 0.00088 29.9 7.2 133 114-261 2-144 (224)
56 PRK11705 cyclopropane fatty ac 58.0 72 0.0016 31.6 9.4 96 113-226 169-266 (383)
57 TIGR03704 PrmC_rel_meth putati 56.9 1.6E+02 0.0036 27.2 11.3 48 207-265 196-243 (251)
58 PF08003 Methyltransf_9: Prote 56.6 1E+02 0.0022 30.2 9.8 113 102-227 107-219 (315)
59 PRK00536 speE spermidine synth 56.4 1E+02 0.0022 29.2 9.7 104 109-217 70-192 (262)
60 PRK00107 gidB 16S rRNA methylt 55.4 1.5E+02 0.0033 26.3 12.0 116 113-258 47-165 (187)
61 PLN02233 ubiquinone biosynthes 53.1 1.4E+02 0.0031 27.7 10.1 106 112-227 74-183 (261)
62 COG4301 Uncharacterized conser 52.7 1E+02 0.0023 29.5 8.9 150 63-228 34-196 (321)
63 PF13847 Methyltransf_31: Meth 50.2 63 0.0014 26.9 6.6 103 112-227 4-110 (152)
64 PF08241 Methyltransf_11: Meth 50.2 20 0.00043 26.4 3.2 91 117-225 2-95 (95)
65 PF06080 DUF938: Protein of un 46.8 1.4E+02 0.003 27.4 8.6 121 98-224 14-138 (204)
66 PF01596 Methyltransf_3: O-met 45.9 83 0.0018 28.5 7.1 110 111-229 45-157 (205)
67 TIGR02752 MenG_heptapren 2-hep 45.8 2.2E+02 0.0047 25.3 10.2 100 113-225 47-149 (231)
68 PF13489 Methyltransf_23: Meth 44.7 57 0.0012 26.7 5.5 105 98-228 9-116 (161)
69 COG4262 Predicted spermidine s 43.8 37 0.00079 34.3 4.6 61 95-157 273-339 (508)
70 TIGR01983 UbiG ubiquinone bios 43.4 1.5E+02 0.0033 26.1 8.4 120 92-226 27-148 (224)
71 TIGR02072 BioC biotin biosynth 41.5 1.6E+02 0.0034 25.8 8.1 96 113-227 36-135 (240)
72 PLN02476 O-methyltransferase 40.0 3.4E+02 0.0074 25.9 11.5 110 111-229 118-230 (278)
73 TIGR00537 hemK_rel_arch HemK-r 38.5 2.5E+02 0.0055 24.0 12.5 120 113-259 21-162 (179)
74 PRK04457 spermidine synthase; 36.1 3.2E+02 0.0069 25.5 9.6 106 111-227 66-177 (262)
75 PRK11783 rlmL 23S rRNA m(2)G24 34.0 1.8E+02 0.0038 31.4 8.4 127 113-261 540-679 (702)
76 PRK10258 biotin biosynthesis p 33.8 2.4E+02 0.0051 25.5 8.2 96 112-227 43-140 (251)
77 PLN02490 MPBQ/MSBQ methyltrans 33.0 4.8E+02 0.01 25.6 12.6 127 113-257 115-251 (340)
78 PHA03411 putative methyltransf 32.3 27 0.00059 33.5 1.7 31 114-144 207-240 (279)
79 COG1352 CheR Methylase of chem 32.2 94 0.002 29.6 5.4 56 163-227 185-241 (268)
80 TIGR00438 rrmJ cell division p 31.3 2.6E+02 0.0056 24.2 7.7 102 112-227 33-146 (188)
81 PF01739 CheR: CheR methyltran 30.0 59 0.0013 29.3 3.5 38 190-227 137-175 (196)
82 PHA03412 putative methyltransf 29.4 36 0.00078 32.0 2.0 32 113-144 194-228 (241)
83 TIGR01934 MenG_MenH_UbiE ubiqu 28.2 3.9E+02 0.0085 23.0 11.0 97 112-224 40-140 (223)
84 PF15076 DUF4543: Domain of un 26.5 28 0.0006 26.3 0.6 27 289-315 30-56 (75)
85 PRK05134 bifunctional 3-demeth 25.9 4.7E+02 0.01 23.2 8.8 101 113-227 50-151 (233)
86 PRK10611 chemotaxis methyltran 25.1 71 0.0015 30.6 3.2 38 190-227 224-262 (287)
87 COG2230 Cfa Cyclopropane fatty 24.5 2.6E+02 0.0056 26.9 6.9 112 98-225 61-174 (283)
88 TIGR00091 tRNA (guanine-N(7)-) 23.8 2.9E+02 0.0062 24.2 6.7 106 112-227 17-132 (194)
89 PF01209 Ubie_methyltran: ubiE 23.4 3.1E+02 0.0067 25.2 7.0 102 113-227 49-154 (233)
90 smart00138 MeTrc Methyltransfe 23.1 1.1E+02 0.0023 28.6 4.0 38 190-227 204-242 (264)
91 PF11899 DUF3419: Protein of u 23.0 1.8E+02 0.0039 29.0 5.7 52 173-226 281-333 (380)
92 PRK00216 ubiE ubiquinone/menaq 23.0 5.1E+02 0.011 22.6 10.5 102 113-226 53-158 (239)
93 COG3598 RepA RecA-family ATPas 22.3 73 0.0016 31.7 2.7 112 113-226 108-238 (402)
94 COG4122 Predicted O-methyltran 21.8 6.3E+02 0.014 23.3 11.0 104 110-228 58-167 (219)
95 PRK14968 putative methyltransf 21.7 4.8E+02 0.01 21.8 13.3 123 113-258 25-169 (188)
96 COG4976 Predicted methyltransf 21.7 1.4E+02 0.003 28.4 4.3 144 112-274 126-277 (287)
97 TIGR00417 speE spermidine synt 21.5 6.5E+02 0.014 23.3 8.9 109 110-227 71-186 (270)
98 PRK10329 glutaredoxin-like pro 20.9 3.7E+02 0.0081 20.2 7.3 70 135-211 3-74 (81)
99 PF05430 Methyltransf_30: S-ad 20.7 3.5E+02 0.0076 22.5 6.2 98 143-258 1-107 (124)
100 PF05185 PRMT5: PRMT5 arginine 20.5 3.9E+02 0.0084 27.3 7.6 99 113-224 188-294 (448)
No 1
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=2.8e-50 Score=382.54 Aligned_cols=240 Identities=23% Similarity=0.396 Sum_probs=204.2
Q ss_pred hhcccCCCChhhHHHHHHHHHHHHhcCCCCCCccCHHHhccCCCCccc--hh----hh------hh--HHHHHHHHHHHH
Q 021091 35 RAKLDGENDPLLQSAVNAASLRFQETHRPEPLFVDPYAGCLVPPDVQM--DL----KK------YS--HHYCLTTKFIDD 100 (317)
Q Consensus 35 ~~~~~~~~~~vs~TAl~~a~aRA~es~r~~~lf~DP~A~~l~~~~~~~--~~----~~------~~--~~~~~RTr~iDd 100 (317)
++...+..++|+.||+++|++||+|++.+++|++||||..|++..... .+ .. .. .++++||+|||+
T Consensus 4 ~~~~~~~~~~v~~Tal~~a~~RA~es~~~~~L~~D~~A~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~Rtr~fD~ 83 (297)
T COG3315 4 DDDSWDKLSGVGKTALIVAAARALESRKPDPLIDDPFAEELVRQGDDDFTKLADPALALGGGDFLERMNFLAARTRYFDD 83 (297)
T ss_pred ccccchhhcchhHHHHHHHHHHHHHhcCCCcccCCHHHHHHHhhhHHHHHHhcChhhhcccchhhhhhhhHHHHHHHHHH
Confidence 344567889999999999999999999999999999999999965311 11 00 01 269999999999
Q ss_pred HHHHHHhccCCCceEEEeCCCCCCcccccCCCCCcEEEEechhhhHHHHHHHHhhcCCCCCCcceEEeecCCCchHHHHH
Q 021091 101 KLLRTVNHMDGLKQVVLLTDGMDTRPYRLNWPTSTIIFDISPERIFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQAL 180 (317)
Q Consensus 101 ~l~~~i~~~~g~~QVV~LGAGLDTRa~RL~~~~~~~~fEVD~P~v~~~K~~~L~~~~~~~p~~~~~v~vdld~~dw~~~L 180 (317)
++++++. .|.+||||||||||||+||++||.+++|||||+|+|+++|+++|++.++.+|.++++|++|+..++|.++|
T Consensus 84 ~~~~~~~--~g~~qvViLgaGLDTRayRl~~~~~~~vfEvD~Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L 161 (297)
T COG3315 84 FVRAALD--AGIRQVVILGAGLDTRAYRLDWPKGTRVFEVDLPEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQAL 161 (297)
T ss_pred HHHHHHH--hcccEEEEeccccccceeecCCCCCCeEEECCCcHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHHH
Confidence 9999998 45899999999999999999999899999999999999999999999999998999999999999999999
Q ss_pred HhcCCCCCCCEEEEEcCC-CCCCHHHHHHHHHHHHhccCCCcEEEEeCc--hhhhh----hh---c--C-------CCC-
Q 021091 181 RAKGFNGNRPSVWAIQGL-PVMTLASFEDVLLLVGSLAMNKCLFLGELP--AWLAE----TE---F--G-------NKS- 240 (317)
Q Consensus 181 ~~~Gfd~~~Ptl~i~EGv-~YL~~~~v~~Ll~~ia~ls~~gS~l~~d~~--~~~~~----~~---~--~-------~~~- 240 (317)
.++|||+++||+||+||| |||++++++++|+.|++++++||.+++++. .+... .. . . +.-
T Consensus 162 ~~~G~d~~~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 241 (297)
T COG3315 162 AAAGFDRSRPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDYSLPGSLRDRLRRPAARKTMRGEDLDRGELVYF 241 (297)
T ss_pred HhcCCCcCCCeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEeccccHHHHhcccchhhhhhccccccccccceec
Confidence 999999999999999999 799999999999999999999999999984 22211 00 0 0 000
Q ss_pred -cchHHHHHHHHhCCCeeee-cCHHHHHHHcCCCCCCC
Q 021091 241 -TTEKWMDKLFMSNGFGVGM-VSYKEVASSLGKELAPG 276 (317)
Q Consensus 241 -~~~~w~~~~l~~~Gw~~~~-~~~~~~~~~~gr~~~~~ 276 (317)
....+.+.++.++||.... .+..++.++||++.+..
T Consensus 242 ~~~~~e~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~ 279 (297)
T COG3315 242 GDDPAEIETWLAERGWRSTLNRTTEDLAARYGRPTPRF 279 (297)
T ss_pred cCCHHHHHHHHHhcCEEEEecCCcHHHHHHhCCCcccc
Confidence 1124457899999999864 48999999999987753
No 2
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=100.00 E-value=1.4e-49 Score=371.42 Aligned_cols=224 Identities=27% Similarity=0.460 Sum_probs=191.5
Q ss_pred hHHHHHHHHHHHHhcCCCCCCccCHHHhccCCCCccc------hh-------h----hhhHHHHHHHHHHHHHHHHHHhc
Q 021091 46 LQSAVNAASLRFQETHRPEPLFVDPYAGCLVPPDVQM------DL-------K----KYSHHYCLTTKFIDDKLLRTVNH 108 (317)
Q Consensus 46 s~TAl~~a~aRA~es~r~~~lf~DP~A~~l~~~~~~~------~~-------~----~~~~~~~~RTr~iDd~l~~~i~~ 108 (317)
++||+++|++||.|+++++++|+||+|..|+++.... .+ . .+..++++||+|||++++++++
T Consensus 1 ~~Tal~~a~~RA~es~r~~~l~~Dp~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rtr~~D~~i~~~~~- 79 (260)
T TIGR00027 1 GRTALGVAAARAIETQRPDRLFRDPYAAAFLGAAGRAAMPLDGLLRADAGAYDGLLGGFADFIAVRTRFFDDFLLAAVA- 79 (260)
T ss_pred ChHHHHHHHHHHHHhCCCCcCcCChHHHHHhchhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHh-
Confidence 5799999999999999999999999999999887541 00 0 1335789999999999999997
Q ss_pred cCCCceEEEeCCCCCCcccccCCCCCcEEEEechhhhHHHHHHHHhhcCCCCCCcceEEeecCCCchHHHHHHhcCCCCC
Q 021091 109 MDGLKQVVLLTDGMDTRPYRLNWPTSTIIFDISPERIFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQALRAKGFNGN 188 (317)
Q Consensus 109 ~~g~~QVV~LGAGLDTRa~RL~~~~~~~~fEVD~P~v~~~K~~~L~~~~~~~p~~~~~v~vdld~~dw~~~L~~~Gfd~~ 188 (317)
.|+.||||||||||||+|||+|+.+++|||||+|+|+++|+++|++++..++.+++++++|+. ++|.+.|..+|||++
T Consensus 80 -~g~~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~-~~w~~~L~~~gfd~~ 157 (260)
T TIGR00027 80 -AGIRQVVILGAGLDTRAYRLPWPDGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLR-QDWPAALAAAGFDPT 157 (260)
T ss_pred -cCCcEEEEeCCccccHHHhcCCCCCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCch-hhHHHHHHhCCCCCC
Confidence 568899999999999999999987899999999999999999999987766778999999999 899999999999999
Q ss_pred CCEEEEEcCC-CCCCHHHHHHHHHHHHhccCCCcEEEEeCchhhhhh------h---cCCC-CcchHH--------HHHH
Q 021091 189 RPSVWAIQGL-PVMTLASFEDVLLLVGSLAMNKCLFLGELPAWLAET------E---FGNK-STTEKW--------MDKL 249 (317)
Q Consensus 189 ~Ptl~i~EGv-~YL~~~~v~~Ll~~ia~ls~~gS~l~~d~~~~~~~~------~---~~~~-~~~~~w--------~~~~ 249 (317)
+||+||+||| +||+++++.+||+.|++++++||.++||+...+... . .... ..+++| +.++
T Consensus 158 ~ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (260)
T TIGR00027 158 APTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYVRPLDGEWRAGMRAPVYHAARGVDGSGLVFGIDRADVAEW 237 (260)
T ss_pred CCeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEeccccchhHHHHHHHHHHHhhhcccccccccCCChhhHHHH
Confidence 9999999999 799999999999999999999999999985432110 0 0011 122333 4689
Q ss_pred HHhCCCeeeecCHHHHHHHcCCC
Q 021091 250 FMSNGFGVGMVSYKEVASSLGKE 272 (317)
Q Consensus 250 l~~~Gw~~~~~~~~~~~~~~gr~ 272 (317)
|..+||++..+++.|++++||||
T Consensus 238 l~~~Gw~~~~~~~~e~~~~y~r~ 260 (260)
T TIGR00027 238 LAERGWRASEHTPGELARRYGRP 260 (260)
T ss_pred HHHCCCeeecCCHHHHHHHhCCC
Confidence 99999998655999999999985
No 3
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=100.00 E-value=1e-40 Score=295.80 Aligned_cols=166 Identities=27% Similarity=0.476 Sum_probs=140.3
Q ss_pred HHHHHHHHHHhcCCCCCCccCHHHhccCCCCccc---------------hhhhhhHHHHHHHHHHHHHHHHHHhccCCCc
Q 021091 49 AVNAASLRFQETHRPEPLFVDPYAGCLVPPDVQM---------------DLKKYSHHYCLTTKFIDDKLLRTVNHMDGLK 113 (317)
Q Consensus 49 Al~~a~aRA~es~r~~~lf~DP~A~~l~~~~~~~---------------~~~~~~~~~~~RTr~iDd~l~~~i~~~~g~~ 113 (317)
|++++++||.++.+++++|+||+|..|++..... ....+..++++||++||+.+.+++.+++|.+
T Consensus 1 al~~~~~RA~~s~~~~~~~~Dp~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rt~~iD~~v~~~i~~~~~~~ 80 (183)
T PF04072_consen 1 ALITAAARAAESKRPDPYFEDPYAARLLSKLGRAWLKDYDFSKFNAASARDPGINRGYAARTRYIDDAVREFIAKHPGAR 80 (183)
T ss_dssp HHHHHHHHHHHHHHHHCSSHTCCCCHHHHCCCCHCC-B--SGHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTES
T ss_pred CHHHHHHHHHHhCCCCcccCCHhHHHHHcccccccccchhhhcccccccccHHHHhHHHHHHHHHHHHHHHhhccCCCCc
Confidence 7899999999999999999999999999887321 0112356899999999999999997767888
Q ss_pred eEEEeCCCCCCcccccCCCC-CcEEEEechhhhHHHHHHHHhhcCCCCCCcceEEeecCCCchHHHHHHhcCCCCCCCEE
Q 021091 114 QVVLLTDGMDTRPYRLNWPT-STIIFDISPERIFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQALRAKGFNGNRPSV 192 (317)
Q Consensus 114 QVV~LGAGLDTRa~RL~~~~-~~~~fEVD~P~v~~~K~~~L~~~~~~~p~~~~~v~vdld~~dw~~~L~~~Gfd~~~Ptl 192 (317)
|||+||||||||+|||+++. +++|||||+|+|++.|+++|++.+...+.+++++++|+..++|.+.|.++|||++.||+
T Consensus 81 qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~~~g~~~~~ptl 160 (183)
T PF04072_consen 81 QVVNLGAGLDTRAYRLDNPAGGVRWFEVDLPEVIALKRRLLPESGARPPANYRYVPADLRDDSWIDALPKAGFDPDRPTL 160 (183)
T ss_dssp EEEEET-TT--HHHHHHHTTTTEEEEEEE-HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHHHCTT-TTSEEE
T ss_pred EEEEcCCCCCchHHHhhccccceEEEEeCCHHHHHHHHHHHHhCcccCCcceeEEeccccchhhHHHHHHhCCCCCCCeE
Confidence 99999999999999998764 89999999999999999999987544344678999999999999999999999999999
Q ss_pred EEEcCC-CCCCHHHHHHHHHHHH
Q 021091 193 WAIQGL-PVMTLASFEDVLLLVG 214 (317)
Q Consensus 193 ~i~EGv-~YL~~~~v~~Ll~~ia 214 (317)
||+||| +||+++++.++|+.|+
T Consensus 161 ~i~Egvl~Yl~~~~~~~ll~~ia 183 (183)
T PF04072_consen 161 FIAEGVLMYLSPEQVDALLRAIA 183 (183)
T ss_dssp EEEESSGGGS-HHHHHHHHHHH-
T ss_pred EEEcchhhcCCHHHHHHHHHHhC
Confidence 999999 7999999999999885
No 4
>KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.1e-24 Score=205.12 Aligned_cols=225 Identities=15% Similarity=0.157 Sum_probs=167.5
Q ss_pred CCChhhHHHHHHHHHHHHhcCCCCCCccCHHHhccCCCCccchhhhhhHHHHHHHHHHHHHHHHHHhccCCCceEEEeCC
Q 021091 41 ENDPLLQSAVNAASLRFQETHRPEPLFVDPYAGCLVPPDVQMDLKKYSHHYCLTTKFIDDKLLRTVNHMDGLKQVVLLTD 120 (317)
Q Consensus 41 ~~~~vs~TAl~~a~aRA~es~r~~~lf~DP~A~~l~~~~~~~~~~~~~~~~~~RTr~iDd~l~~~i~~~~g~~QVV~LGA 120 (317)
...+|..|..-....++..+ ..+++.||+...++........+.+++|+.+||.-|+..+.+|+.+.++..|||||||
T Consensus 19 ~d~~vq~Tnddss~ck~~~~--~~gy~~d~~~~~~~~~~~~rr~P~inRGy~~R~~aI~~~v~~Fl~~~~~~~qivnLGc 96 (335)
T KOG2918|consen 19 ADSAVQGTNDDSSLCKRSAT--KSGYWHDPFIKLFVPSKKARRAPEINRGYWARTMAIRHAVRAFLEQTDGKKQIVNLGA 96 (335)
T ss_pred cchhhhhccchhhhhhhHHH--hcCCccCchhhhhccccccCCCceecchhhHHHHHHHHHHHHHHHhcCCceEEEEcCC
Confidence 44467777777777776555 3579999999999986333333346789999999999999999987678889999999
Q ss_pred CCCCcccccC---CCCCcEEEEechhhhHHHHHHHHhhcCC---------C----------CCCcceEEeecCC-CchHH
Q 021091 121 GMDTRPYRLN---WPTSTIIFDISPERIFKISAEKLEGVGA---------K----------IPRSCLFLHVPLE-SSNIQ 177 (317)
Q Consensus 121 GLDTRa~RL~---~~~~~~~fEVD~P~v~~~K~~~L~~~~~---------~----------~p~~~~~v~vdld-~~dw~ 177 (317)
|+||++|||. ++..+.+||||+|++++.|..++.+... + ...+++.+++|++ ...+.
T Consensus 97 G~D~l~frL~s~~~~~~~~fievDfp~~~~rKi~ik~~~~~s~~l~~~~~eD~~~~s~~~l~s~~Y~~~g~DLrdl~ele 176 (335)
T KOG2918|consen 97 GFDTLYFRLLSSGELDRVKFIEVDFPEVVERKISIKRKPELSSILLGLHDEDVVDLSGTDLHSGRYHLIGCDLRDLNELE 176 (335)
T ss_pred CccchhhhhhccCCCCcceEEEecCcHHHHHHHhhcccCchhhhhhccccccccccCcceeccCceeeeccchhhhHHHH
Confidence 9999999993 4567999999999999999844433211 0 0236788888887 35678
Q ss_pred HHHHhcCCCCCCCEEEEEcCC-CCCCHHHHHHHHHHHHhccCCCcEEEEeCchhhhhhh----cCCCC-----------c
Q 021091 178 QALRAKGFNGNRPSVWAIQGL-PVMTLASFEDVLLLVGSLAMNKCLFLGELPAWLAETE----FGNKS-----------T 241 (317)
Q Consensus 178 ~~L~~~Gfd~~~Ptl~i~EGv-~YL~~~~v~~Ll~~ia~ls~~gS~l~~d~~~~~~~~~----~~~~~-----------~ 241 (317)
+.|...|.|++.||++|+||| .||++++...||+++++.++.+-.+.||......+-. ..++. .
T Consensus 177 ~kL~~c~~d~~lpTi~iaEcvLvYM~pe~S~~Li~w~~~~F~~a~fv~YEQi~~~D~Fg~vM~~nlk~r~~~L~gle~y~ 256 (335)
T KOG2918|consen 177 EKLKKCGLDTNLPTIFIAECVLVYMEPEESANLIKWAASKFENAHFVNYEQINPNDRFGKVMLANLKRRGCPLHGLETYN 256 (335)
T ss_pred HHHHhccCCcCcceeehhhhhheeccHHHHHHHHHHHHHhCCcccEEEEeccCCCChHHHHHHHHHHhcCCCCchhhhcc
Confidence 999999999999999999999 5999999999999999988777788899754221110 00000 0
Q ss_pred chHHHHHHHHhCCCe-eeecCHHHHHH
Q 021091 242 TEKWMDKLFMSNGFG-VGMVSYKEVAS 267 (317)
Q Consensus 242 ~~~w~~~~l~~~Gw~-~~~~~~~~~~~ 267 (317)
+-.--..-|.+.||. |.+.+.-++..
T Consensus 257 s~Esq~~Rf~~~Gw~~v~a~Dm~ei~n 283 (335)
T KOG2918|consen 257 SIESQRSRFLKAGWEYVIAVDMNEIYN 283 (335)
T ss_pred cHHHHHHHHHhcCCceeehhhHHHHHH
Confidence 111113456799998 57777766644
No 5
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=97.83 E-value=0.00012 Score=69.03 Aligned_cols=128 Identities=9% Similarity=0.068 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHhccCCCceEEEeCCCCCCcccccC-----CCCCcEEEEech-hhhHHHHHHHHhhcCCCCCCcceEEee
Q 021091 96 KFIDDKLLRTVNHMDGLKQVVLLTDGMDTRPYRLN-----WPTSTIIFDISP-ERIFKISAEKLEGVGAKIPRSCLFLHV 169 (317)
Q Consensus 96 r~iDd~l~~~i~~~~g~~QVV~LGAGLDTRa~RL~-----~~~~~~~fEVD~-P~v~~~K~~~L~~~~~~~p~~~~~v~v 169 (317)
.|+-..++-... ..|++|++-||||+=|...=-. .| +.+|.=||. |-|++.-+.+|.... ..+..++..
T Consensus 54 ~Fl~RaVr~la~-~~GIrQFLDlGsGlPT~~nvHevAq~~~P-~aRVVYVD~DPvv~ah~ralL~~~~---~g~t~~v~a 128 (267)
T PF04672_consen 54 AFLRRAVRYLAE-EAGIRQFLDLGSGLPTAGNVHEVAQRVAP-DARVVYVDNDPVVLAHARALLADNP---RGRTAYVQA 128 (267)
T ss_dssp HHHHHHHHHHHC-TT---EEEEET--S--SS-HHHHHHHH-T-T-EEEEEESSHHHHHCCHHHHTT-T---TSEEEEEE-
T ss_pred HHHHHHHHHHHH-hcCcceEEEcccCCCCCCCHhHHHHhhCC-CceEEEECCCchHHHHHHhhhcCCC---CccEEEEeC
Confidence 344445444333 2499999999999998642111 23 456666665 667788788888752 123789999
Q ss_pred cCCC-chHHHHH-HhcCCCCCCCEEEEEcCCC-CCCH-HHHHHHHHHHHhccCCCcEEEEeCc
Q 021091 170 PLES-SNIQQAL-RAKGFNGNRPSVWAIQGLP-VMTL-ASFEDVLLLVGSLAMNKCLFLGELP 228 (317)
Q Consensus 170 dld~-~dw~~~L-~~~Gfd~~~Ptl~i~EGv~-YL~~-~~v~~Ll~~ia~ls~~gS~l~~d~~ 228 (317)
|+.. +...+.. ...-+|.++|+.++.=||+ +++. ++...+++.+.+..+|||.++..+.
T Consensus 129 D~r~p~~iL~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~ 191 (267)
T PF04672_consen 129 DLRDPEAILAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHA 191 (267)
T ss_dssp -TT-HHHHHCSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEE
T ss_pred CCCCHHHHhcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEec
Confidence 9874 3333322 2345899999999999995 7754 6889999999999999999988753
No 6
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=95.78 E-value=0.34 Score=46.69 Aligned_cols=160 Identities=13% Similarity=0.159 Sum_probs=102.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhcc---CCCceEEEeCCCCCCccccc----CCCC-CcEEEEech-hhhHHHHHHHHhhcCC
Q 021091 88 SHHYCLTTKFIDDKLLRTVNHM---DGLKQVVLLTDGMDTRPYRL----NWPT-STIIFDISP-ERIFKISAEKLEGVGA 158 (317)
Q Consensus 88 ~~~~~~RTr~iDd~l~~~i~~~---~g~~QVV~LGAGLDTRa~RL----~~~~-~~~~fEVD~-P~v~~~K~~~L~~~~~ 158 (317)
+.++-.|...+...|.+++... +..--||.++||-= |+ =| ..|. ...+.=.|+ |..++.=++++++.+-
T Consensus 109 WrGIR~Rk~~l~~~i~~ai~~L~~~g~pvrIlDIAaG~G-RY-vlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL 186 (311)
T PF12147_consen 109 WRGIRQRKVHLEELIRQAIARLREQGRPVRILDIAAGHG-RY-VLDALEKHPERPDSILLRDYSPINVEKGRALIAERGL 186 (311)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeccCCc-HH-HHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCC
Confidence 3567778888888888877631 34558999999942 21 22 1232 234455554 4455666777777653
Q ss_pred CCCCcceEEeecCCCchHHHHHHhcCCCCCCCEEEEEcCCC-CCCHH-HHHHHHHHHHhccCCCcEEEEeCchhhhhhh-
Q 021091 159 KIPRSCLFLHVPLESSNIQQALRAKGFNGNRPSVWAIQGLP-VMTLA-SFEDVLLLVGSLAMNKCLFLGELPAWLAETE- 235 (317)
Q Consensus 159 ~~p~~~~~v~vdld~~dw~~~L~~~Gfd~~~Ptl~i~EGv~-YL~~~-~v~~Ll~~ia~ls~~gS~l~~d~~~~~~~~~- 235 (317)
. +-.++...|.... +.|.. . .-+|++.|+-||. ||+.. .+...|+.+++...||+.++|.--+|..-..
T Consensus 187 ~--~i~~f~~~dAfd~---~~l~~--l-~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~ 258 (311)
T PF12147_consen 187 E--DIARFEQGDAFDR---DSLAA--L-DPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEM 258 (311)
T ss_pred c--cceEEEecCCCCH---hHhhc--c-CCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHH
Confidence 3 2458888885532 23332 1 3479999999994 77775 5888999999999999999998544432111
Q ss_pred ----cCCCCcchHH---------HHHHHHhCCCee
Q 021091 236 ----FGNKSTTEKW---------MDKLFMSNGFGV 257 (317)
Q Consensus 236 ----~~~~~~~~~w---------~~~~l~~~Gw~~ 257 (317)
...--.+.+| ++++++.+||+.
T Consensus 259 IAr~LtsHr~g~~WvMRrRsq~EmD~Lv~~aGF~K 293 (311)
T PF12147_consen 259 IARVLTSHRDGKAWVMRRRSQAEMDQLVEAAGFEK 293 (311)
T ss_pred HHHHHhcccCCCceEEEecCHHHHHHHHHHcCCch
Confidence 1110124456 478999999984
No 7
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=95.12 E-value=0.14 Score=46.73 Aligned_cols=116 Identities=13% Similarity=0.082 Sum_probs=76.5
Q ss_pred HHHHHHHHHH-HHHHHHHhccCCCceEEEeCCCCCCccccc--CCCCCcEEEEechhhhHHHHHHHHhhcCCCCCCcceE
Q 021091 90 HYCLTTKFID-DKLLRTVNHMDGLKQVVLLTDGMDTRPYRL--NWPTSTIIFDISPERIFKISAEKLEGVGAKIPRSCLF 166 (317)
Q Consensus 90 ~~~~RTr~iD-d~l~~~i~~~~g~~QVV~LGAGLDTRa~RL--~~~~~~~~fEVD~P~v~~~K~~~L~~~~~~~p~~~~~ 166 (317)
.+...++..- ..+..... ..+.++||-+|+|.=.-...+ .+| ++++.-+|+|+|++.-++ .+++++
T Consensus 79 ~m~~~~~~~~~~~~~~~~d-~~~~~~vvDvGGG~G~~~~~l~~~~P-~l~~~v~Dlp~v~~~~~~---------~~rv~~ 147 (241)
T PF00891_consen 79 AMAEYSRLNAFDILLEAFD-FSGFKTVVDVGGGSGHFAIALARAYP-NLRATVFDLPEVIEQAKE---------ADRVEF 147 (241)
T ss_dssp HHHHHHHHHHHHHHHHHST-TTTSSEEEEET-TTSHHHHHHHHHST-TSEEEEEE-HHHHCCHHH---------TTTEEE
T ss_pred HHHhhhhcchhhhhhcccc-ccCccEEEeccCcchHHHHHHHHHCC-CCcceeeccHhhhhcccc---------cccccc
Confidence 3433343333 33333332 356789999999988877777 466 688899999999875444 248999
Q ss_pred EeecCCCchHHHHHHhcCCCCCCCEEEEEcCCCCCCHHHHHHHHHHHHhccCCC--cE-EEEeC
Q 021091 167 LHVPLESSNIQQALRAKGFNGNRPSVWAIQGLPVMTLASFEDVLLLVGSLAMNK--CL-FLGEL 227 (317)
Q Consensus 167 v~vdld~~dw~~~L~~~Gfd~~~Ptl~i~EGv~YL~~~~v~~Ll~~ia~ls~~g--S~-l~~d~ 227 (317)
++.|+. +.+. ..-++++.-.+-.++.+++..||+.+.+...|| ++ ++.|+
T Consensus 148 ~~gd~f-~~~P----------~~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~ 200 (241)
T PF00891_consen 148 VPGDFF-DPLP----------VADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEM 200 (241)
T ss_dssp EES-TT-TCCS----------SESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEE
T ss_pred ccccHH-hhhc----------cccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEee
Confidence 999987 4432 222555544445789999999999999998888 76 56675
No 8
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=95.05 E-value=0.45 Score=45.41 Aligned_cols=153 Identities=13% Similarity=-0.012 Sum_probs=87.2
Q ss_pred CCCCccCHHHhccCCCCccchhhhhhHHHHHHH--HHHHHHHHHHHhccCCCceEEEeCCCCCCccccc--CCCCCcEEE
Q 021091 63 PEPLFVDPYAGCLVPPDVQMDLKKYSHHYCLTT--KFIDDKLLRTVNHMDGLKQVVLLTDGMDTRPYRL--NWPTSTIIF 138 (317)
Q Consensus 63 ~~~lf~DP~A~~l~~~~~~~~~~~~~~~~~~RT--r~iDd~l~~~i~~~~g~~QVV~LGAGLDTRa~RL--~~~~~~~~f 138 (317)
|..+|.|..-..+...+.. ...++-.|+ .++++...+.++..+....||-||||-=...-.| ..+.+.+++
T Consensus 18 p~~~~yd~~G~~lf~~i~~-----~peYy~tr~E~~il~~~~~~ia~~~~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~ 92 (301)
T TIGR03438 18 PPKYFYDARGSELFEQICE-----LPEYYPTRTEAAILERHADEIAAATGAGCELVELGSGSSRKTRLLLDALRQPARYV 92 (301)
T ss_pred CchhcccchHHHHHHHHHC-----CCccccHHHHHHHHHHHHHHHHHhhCCCCeEEecCCCcchhHHHHHHhhccCCeEE
Confidence 4457777766555544321 111222332 2333333333221123358999999987644444 222257788
Q ss_pred Eechh-hhHHHHHHHHhhcCCCCCCcceEEeecCCCchHHHHHHhcCCCCCCCEEEEEcCC-C-CCCHHHHHHHHHHHHh
Q 021091 139 DISPE-RIFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQALRAKGFNGNRPSVWAIQGL-P-VMTLASFEDVLLLVGS 215 (317)
Q Consensus 139 EVD~P-~v~~~K~~~L~~~~~~~p~~~~~v~vdld~~dw~~~L~~~Gfd~~~Ptl~i~EGv-~-YL~~~~v~~Ll~~ia~ 215 (317)
=||.. ++++.-++.+.+.. +.-++..+..|+.. ....+.. ++ +.+.++++-|. + .+++++...+|+.+.+
T Consensus 93 ~iDiS~~mL~~a~~~l~~~~--p~~~v~~i~gD~~~--~~~~~~~--~~-~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~ 165 (301)
T TIGR03438 93 PIDISADALKESAAALAADY--PQLEVHGICADFTQ--PLALPPE--PA-AGRRLGFFPGSTIGNFTPEEAVAFLRRIRQ 165 (301)
T ss_pred EEECCHHHHHHHHHHHHhhC--CCceEEEEEEcccc--hhhhhcc--cc-cCCeEEEEecccccCCCHHHHHHHHHHHHH
Confidence 88874 45555444454422 11135566777753 1111111 21 34777888887 5 4899999999999999
Q ss_pred ccCCCcEEEEeC
Q 021091 216 LAMNKCLFLGEL 227 (317)
Q Consensus 216 ls~~gS~l~~d~ 227 (317)
...||..++++.
T Consensus 166 ~L~pgG~~lig~ 177 (301)
T TIGR03438 166 LLGPGGGLLIGV 177 (301)
T ss_pred hcCCCCEEEEec
Confidence 999999887653
No 9
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=93.38 E-value=0.91 Score=43.11 Aligned_cols=105 Identities=10% Similarity=0.018 Sum_probs=71.8
Q ss_pred CCCceEEEeCCCCCCccccc--CCCCCcEEEEechhhhHHHHHHHHhhcCCCCCCcceEEeecCCCchHHHHHHhcCCCC
Q 021091 110 DGLKQVVLLTDGMDTRPYRL--NWPTSTIIFDISPERIFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQALRAKGFNG 187 (317)
Q Consensus 110 ~g~~QVV~LGAGLDTRa~RL--~~~~~~~~fEVD~P~v~~~K~~~L~~~~~~~p~~~~~v~vdld~~dw~~~L~~~Gfd~ 187 (317)
.+...|+-+|||-=+-+..+ ..| +.++.=+|.|++++.-++.+.+.+. .++++++..|+...++ +
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~~~~p-~~~~~~~D~~~~~~~a~~~~~~~gl--~~rv~~~~~d~~~~~~----------~ 214 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAMLKHFP-ELDSTILNLPGAIDLVNENAAEKGV--ADRMRGIAVDIYKESY----------P 214 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHHHHCC-CCEEEEEecHHHHHHHHHHHHhCCc--cceEEEEecCccCCCC----------C
Confidence 34568999999998766655 344 4667777889998876666666542 2368888888764332 1
Q ss_pred CCCEEEEEcCCCCCCHHHHHHHHHHHHhccCCCcEE-EEeC
Q 021091 188 NRPSVWAIQGLPVMTLASFEDVLLLVGSLAMNKCLF-LGEL 227 (317)
Q Consensus 188 ~~Ptl~i~EGv~YL~~~~v~~Ll~~ia~ls~~gS~l-~~d~ 227 (317)
+.-.+|+...+...+.+....+|+.+.+...||+++ +.|+
T Consensus 215 ~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 215 EADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred CCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 122444444333567788899999999988888875 5665
No 10
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=92.42 E-value=2.1 Score=39.46 Aligned_cols=195 Identities=16% Similarity=0.122 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCceEEEeCCCCCCcccccC--CCCCcEEEEech-hhhHHHHHHHHhhcCCCCCCcceE
Q 021091 90 HYCLTTKFIDDKLLRTVNHMDGLKQVVLLTDGMDTRPYRLN--WPTSTIIFDISP-ERIFKISAEKLEGVGAKIPRSCLF 166 (317)
Q Consensus 90 ~~~~RTr~iDd~l~~~i~~~~g~~QVV~LGAGLDTRa~RL~--~~~~~~~fEVD~-P~v~~~K~~~L~~~~~~~p~~~~~ 166 (317)
....|++.+.+.+...-. ....+|+-+|||--.-...+. .| +.+++=+|. |.+++.-++ .++.+
T Consensus 10 ~~~~~~~~~~~ll~~l~~--~~~~~vLDlGcG~G~~~~~l~~~~p-~~~v~gvD~s~~~~~~a~~----------~~~~~ 76 (255)
T PRK14103 10 FADHRGRPFYDLLARVGA--ERARRVVDLGCGPGNLTRYLARRWP-GAVIEALDSSPEMVAAARE----------RGVDA 76 (255)
T ss_pred HHhHhhCHHHHHHHhCCC--CCCCEEEEEcCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHh----------cCCcE
Confidence 345577777777655422 234689999999987655552 33 467888887 556543211 13556
Q ss_pred EeecCCCchHHHHHHhcCCCCCCCEEEEEcCCCCCCHHHHHHHHHHHHhccCCCcEEEEeCchh----h----hhhh---
Q 021091 167 LHVPLESSNIQQALRAKGFNGNRPSVWAIQGLPVMTLASFEDVLLLVGSLAMNKCLFLGELPAW----L----AETE--- 235 (317)
Q Consensus 167 v~vdld~~dw~~~L~~~Gfd~~~Ptl~i~EGv~YL~~~~v~~Ll~~ia~ls~~gS~l~~d~~~~----~----~~~~--- 235 (317)
+..|+. +|. ....|| .++....+.+++. ...+++.+.+...||+.+++..+.. . ....
T Consensus 77 ~~~d~~--~~~---~~~~fD----~v~~~~~l~~~~d--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~ 145 (255)
T PRK14103 77 RTGDVR--DWK---PKPDTD----VVVSNAALQWVPE--HADLLVRWVDELAPGSWIAVQVPGNFDAPSHAAVRALARRE 145 (255)
T ss_pred EEcChh--hCC---CCCCce----EEEEehhhhhCCC--HHHHHHHHHHhCCCCcEEEEEcCCCcCChhHHHHHHHhccC
Confidence 666653 331 112343 4444444456653 3667888888888999887754311 0 0000
Q ss_pred --------cCC----CCcchHHHHHHHHhCCCeeeecCHHHHHHHcCCCCCC-CcchhHH----HHHHHhcCchhhhHHH
Q 021091 236 --------FGN----KSTTEKWMDKLFMSNGFGVGMVSYKEVASSLGKELAP-GYYKNIL----FLAEQLRFSDDQMDTW 298 (317)
Q Consensus 236 --------~~~----~~~~~~w~~~~l~~~Gw~~~~~~~~~~~~~~gr~~~~-~~~~~~~----~~~~~~~~~~~~~~~~ 298 (317)
... .........++|.++||++.+... . +-.++.. ..+..+. +-...-+++.++.+.+
T Consensus 146 ~w~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 220 (255)
T PRK14103 146 PWAKLLRDIPFRVGAVVQTPAGYAELLTDAGCKVDAWET-T----YVHQLTGEDPVLDWITGTALRPVRERLSDDSWEQF 220 (255)
T ss_pred chhHHhcccccccCcCCCCHHHHHHHHHhCCCeEEEEee-e----eeeeCCCchhhhhhhhccchhhhhhhCCHHHHHHH
Confidence 000 011233346889999998643221 1 1111111 1111111 1122348899999999
Q ss_pred HHHHHHhhhh---cCccC
Q 021091 299 RRELQRVEEE---GDEEG 313 (317)
Q Consensus 299 ~~~~~~~~~~---~~~~~ 313 (317)
++++.+.=.+ .++||
T Consensus 221 ~~~~~~~l~~~~~~~~~g 238 (255)
T PRK14103 221 RAELIPLLREAYPPRADG 238 (255)
T ss_pred HHHHHHHHHHHCCCCCCC
Confidence 9987764433 34555
No 11
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=92.36 E-value=0.53 Score=37.02 Aligned_cols=103 Identities=14% Similarity=0.098 Sum_probs=70.6
Q ss_pred ceEEEeCCCCCCcccccCC--CCCcEEEEech-hhhHHHHHHHHhhcCCCCCCcceEEeecCCCchHHHHHHhcCCCCCC
Q 021091 113 KQVVLLTDGMDTRPYRLNW--PTSTIIFDISP-ERIFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQALRAKGFNGNR 189 (317)
Q Consensus 113 ~QVV~LGAGLDTRa~RL~~--~~~~~~fEVD~-P~v~~~K~~~L~~~~~~~p~~~~~v~vdld~~dw~~~L~~~Gfd~~~ 189 (317)
..|+-||||.=.-...+.. + +.+++=||. |++++.-++...+.+. ..+++++..|+ ...+. ....
T Consensus 3 ~~vLDlGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~--~~~i~~~~~d~-~~~~~--------~~~~ 70 (112)
T PF12847_consen 3 GRVLDLGCGTGRLSIALARLFP-GARVVGVDISPEMLEIARERAAEEGL--SDRITFVQGDA-EFDPD--------FLEP 70 (112)
T ss_dssp CEEEEETTTTSHHHHHHHHHHT-TSEEEEEESSHHHHHHHHHHHHHTTT--TTTEEEEESCC-HGGTT--------TSSC
T ss_pred CEEEEEcCcCCHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHhcCC--CCCeEEEECcc-ccCcc--------cCCC
Confidence 4689999998776666633 4 566777776 6777766666644332 24788898888 11111 1233
Q ss_pred CEEEEEcC-C-C-CCCHHHHHHHHHHHHhccCCCcEEEEeC
Q 021091 190 PSVWAIQG-L-P-VMTLASFEDVLLLVGSLAMNKCLFLGEL 227 (317)
Q Consensus 190 Ptl~i~EG-v-~-YL~~~~v~~Ll~~ia~ls~~gS~l~~d~ 227 (317)
.-++++-+ . . |+..++...+++.+.++..||..++++.
T Consensus 71 ~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 71 FDLVICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp EEEEEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCEEEECCCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 56777777 3 3 6666788999999999988999988763
No 12
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=91.32 E-value=5.4 Score=37.25 Aligned_cols=132 Identities=12% Similarity=0.058 Sum_probs=74.4
Q ss_pred CceEEEeCCCCCCcccccCCCCCcEEEEech-hhhHHHHHHHHhhcCCCCCCcceEEeecCCCchHHHHHHhcCCCCCCC
Q 021091 112 LKQVVLLTDGMDTRPYRLNWPTSTIIFDISP-ERIFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQALRAKGFNGNRP 190 (317)
Q Consensus 112 ~~QVV~LGAGLDTRa~RL~~~~~~~~fEVD~-P~v~~~K~~~L~~~~~~~p~~~~~v~vdld~~dw~~~L~~~Gfd~~~P 190 (317)
...|+-+|||.-.-+..+....+.+++=+|. |++++.-++.... ..++.++..|+.... |..+.=
T Consensus 53 ~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~-----~~~i~~~~~D~~~~~---------~~~~~F 118 (263)
T PTZ00098 53 NSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD-----KNKIEFEANDILKKD---------FPENTF 118 (263)
T ss_pred CCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc-----CCceEEEECCcccCC---------CCCCCe
Confidence 3579999999876554552212457777776 4555443333322 125777777765211 211222
Q ss_pred EEEEE-cCCCCCCHHHHHHHHHHHHhccCCCcEEEE-eCch-----hhhhh--h---cCCCCcchHHHHHHHHhCCCee
Q 021091 191 SVWAI-QGLPVMTLASFEDVLLLVGSLAMNKCLFLG-ELPA-----WLAET--E---FGNKSTTEKWMDKLFMSNGFGV 257 (317)
Q Consensus 191 tl~i~-EGv~YL~~~~v~~Ll~~ia~ls~~gS~l~~-d~~~-----~~~~~--~---~~~~~~~~~w~~~~l~~~Gw~~ 257 (317)
-++++ ..+.+++.++...+|+.+.++..||+.+++ |+.. +.... . ......+.....++|.++||..
T Consensus 119 D~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~ 197 (263)
T PTZ00098 119 DMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIENWDEEFKAYIKKRKYTLIPIQEYGDLIKSCNFQN 197 (263)
T ss_pred EEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccCcHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCCe
Confidence 34444 444677777888999999999889887664 4321 11100 0 0111123333457888889985
No 13
>PLN03075 nicotianamine synthase; Provisional
Probab=90.92 E-value=1.6 Score=42.04 Aligned_cols=106 Identities=12% Similarity=0.182 Sum_probs=70.9
Q ss_pred CCceEEEeCCC-CCCccccc---CCCCCcEEEEech-hhhHHHHHHHHhh-cCCCCCCcceEEeecCCCchHHHHHHhcC
Q 021091 111 GLKQVVLLTDG-MDTRPYRL---NWPTSTIIFDISP-ERIFKISAEKLEG-VGAKIPRSCLFLHVPLESSNIQQALRAKG 184 (317)
Q Consensus 111 g~~QVV~LGAG-LDTRa~RL---~~~~~~~~fEVD~-P~v~~~K~~~L~~-~~~~~p~~~~~v~vdld~~dw~~~L~~~G 184 (317)
+.++|+-+||| +=-.+.-+ ..| +.++.-+|. |+.++.-++.++. .+ ..++..++..|+.. +... ..+
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p-~~~~~giD~d~~ai~~Ar~~~~~~~g--L~~rV~F~~~Da~~--~~~~--l~~ 195 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLP-TTSFHNFDIDPSANDVARRLVSSDPD--LSKRMFFHTADVMD--VTES--LKE 195 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHhhhccC--ccCCcEEEECchhh--cccc--cCC
Confidence 56799999999 52223333 133 466777776 5566666666643 22 23468888888652 1111 123
Q ss_pred CCCCCCEEEEEcCCCCCCHHHHHHHHHHHHhccCCCcEEEEeCc
Q 021091 185 FNGNRPSVWAIQGLPVMTLASFEDVLLLVGSLAMNKCLFLGELP 228 (317)
Q Consensus 185 fd~~~Ptl~i~EGv~YL~~~~v~~Ll~~ia~ls~~gS~l~~d~~ 228 (317)
|| .+|+. .+.|+..++-.++|+.+.+...||+.++.-..
T Consensus 196 FD----lVF~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~~ 234 (296)
T PLN03075 196 YD----VVFLA-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRSA 234 (296)
T ss_pred cC----EEEEe-cccccccccHHHHHHHHHHhcCCCcEEEEecc
Confidence 66 78888 55799888889999999999999999887753
No 14
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=90.33 E-value=5.3 Score=35.77 Aligned_cols=133 Identities=17% Similarity=0.111 Sum_probs=74.8
Q ss_pred CceEEEeCCCCCCcccccCCCCCcEEEEech-hhhHHHHHHHHhhcCCCCCCcceEEeecCCCchHHHHHHhcCCCCCCC
Q 021091 112 LKQVVLLTDGMDTRPYRLNWPTSTIIFDISP-ERIFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQALRAKGFNGNRP 190 (317)
Q Consensus 112 ~~QVV~LGAGLDTRa~RL~~~~~~~~fEVD~-P~v~~~K~~~L~~~~~~~p~~~~~v~vdld~~dw~~~L~~~Gfd~~~P 190 (317)
...|+-+|||.=.-...+... +..++=+|. |+++..-++.+...+. +.+..++..|+.... .-||
T Consensus 56 ~~~vLDiGcG~G~~~~~la~~-~~~v~gvD~s~~~i~~a~~~~~~~~~--~~~i~~~~~d~~~~~-------~~fD---- 121 (219)
T TIGR02021 56 GKRVLDAGCGTGLLSIELAKR-GAIVKAVDISEQMVQMARNRAQGRDV--AGNVEFEVNDLLSLC-------GEFD---- 121 (219)
T ss_pred CCEEEEEeCCCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCC--CCceEEEECChhhCC-------CCcC----
Confidence 468999999987655555322 345666665 5566554555544321 125666666654211 1233
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhccCCCcEEEEeCchh-hh------hhhcC------CCCcchHHHHHHHHhCCCee
Q 021091 191 SVWAIQGLPVMTLASFEDVLLLVGSLAMNKCLFLGELPAW-LA------ETEFG------NKSTTEKWMDKLFMSNGFGV 257 (317)
Q Consensus 191 tl~i~EGv~YL~~~~v~~Ll~~ia~ls~~gS~l~~d~~~~-~~------~~~~~------~~~~~~~w~~~~l~~~Gw~~ 257 (317)
.++....+.|++.+....+++.+.....++..+.+..... .. ....+ ....+..++.+++.++||.+
T Consensus 122 ~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v 201 (219)
T TIGR02021 122 IVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFAPKTAWLAFLKMIGELFPGSSRATSAYLHPMTDLERALGELGWKI 201 (219)
T ss_pred EEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEECCCchHHHHHHHHHhhCcCcccccceEEecHHHHHHHHHHcCcee
Confidence 5555555567888888889999988765554444432111 10 00000 11123455678899999997
Q ss_pred e
Q 021091 258 G 258 (317)
Q Consensus 258 ~ 258 (317)
.
T Consensus 202 ~ 202 (219)
T TIGR02021 202 V 202 (219)
T ss_pred e
Confidence 4
No 15
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=90.17 E-value=1.3 Score=34.73 Aligned_cols=93 Identities=11% Similarity=0.180 Sum_probs=57.7
Q ss_pred EEEeCCCCCCccccc--CCCC--CcEEEEech-hhhHHHHHHHHhhcCCCCCCcceEEeecCCCchHHHHHHhcCCCCCC
Q 021091 115 VVLLTDGMDTRPYRL--NWPT--STIIFDISP-ERIFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQALRAKGFNGNR 189 (317)
Q Consensus 115 VV~LGAGLDTRa~RL--~~~~--~~~~fEVD~-P~v~~~K~~~L~~~~~~~p~~~~~v~vdld~~dw~~~L~~~Gfd~~~ 189 (317)
|+-||||.=+-...+ ..+. ..+++=||. |++++.=++...+.+ + +++++..|+. +|... ...
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~---~-~~~~~~~D~~--~l~~~-------~~~ 67 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDG---P-KVRFVQADAR--DLPFS-------DGK 67 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTT---T-TSEEEESCTT--CHHHH-------SSS
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcC---C-ceEEEECCHh--HCccc-------CCC
Confidence 567888875433333 1222 377888886 566665555554432 2 6788888885 45321 124
Q ss_pred CEEEEE-cCCC-CCCHHHHHHHHHHHHhccCCC
Q 021091 190 PSVWAI-QGLP-VMTLASFEDVLLLVGSLAMNK 220 (317)
Q Consensus 190 Ptl~i~-EGv~-YL~~~~v~~Ll~~ia~ls~~g 220 (317)
.-++++ -+++ |+++++...+++.+.++..||
T Consensus 68 ~D~v~~~~~~~~~~~~~~~~~ll~~~~~~l~pg 100 (101)
T PF13649_consen 68 FDLVVCSGLSLHHLSPEELEALLRRIARLLRPG 100 (101)
T ss_dssp EEEEEE-TTGGGGSSHHHHHHHHHHHHHTEEEE
T ss_pred eeEEEEcCCccCCCCHHHHHHHHHHHHHHhCCC
Confidence 456666 5544 999999999999999988765
No 16
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=90.10 E-value=5 Score=37.00 Aligned_cols=101 Identities=12% Similarity=0.061 Sum_probs=63.3
Q ss_pred CceEEEeCCCCCCcccccCCCCCcEEEEech-hhhHHHHHHHHhhcCCCCCCcceEEeecCCCchHHHHHHhcCCCCCCC
Q 021091 112 LKQVVLLTDGMDTRPYRLNWPTSTIIFDISP-ERIFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQALRAKGFNGNRP 190 (317)
Q Consensus 112 ~~QVV~LGAGLDTRa~RL~~~~~~~~fEVD~-P~v~~~K~~~L~~~~~~~p~~~~~v~vdld~~dw~~~L~~~Gfd~~~P 190 (317)
...|+-+|||.-.-+..|... +..++=+|. |++++.-++.+.+.+. ..+++++..|+. ++.. .. .+.-
T Consensus 45 ~~~vLDiGcG~G~~a~~la~~-g~~v~~vD~s~~~l~~a~~~~~~~g~--~~~v~~~~~d~~--~l~~-~~-----~~~f 113 (255)
T PRK11036 45 PLRVLDAGGGEGQTAIKLAEL-GHQVILCDLSAEMIQRAKQAAEAKGV--SDNMQFIHCAAQ--DIAQ-HL-----ETPV 113 (255)
T ss_pred CCEEEEeCCCchHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHhcCC--ccceEEEEcCHH--HHhh-hc-----CCCC
Confidence 358999999999776666432 467778887 6777765666655432 125666666654 2221 11 1223
Q ss_pred EEEEEcCCC-CCCHHHHHHHHHHHHhccCCCcEEEE
Q 021091 191 SVWAIQGLP-VMTLASFEDVLLLVGSLAMNKCLFLG 225 (317)
Q Consensus 191 tl~i~EGv~-YL~~~~v~~Ll~~ia~ls~~gS~l~~ 225 (317)
-++++-+++ |++.. ..+|+.+.+...||+.++.
T Consensus 114 D~V~~~~vl~~~~~~--~~~l~~~~~~LkpgG~l~i 147 (255)
T PRK11036 114 DLILFHAVLEWVADP--KSVLQTLWSVLRPGGALSL 147 (255)
T ss_pred CEEEehhHHHhhCCH--HHHHHHHHHHcCCCeEEEE
Confidence 455566664 67533 4678888888889888764
No 17
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=88.91 E-value=16 Score=35.55 Aligned_cols=154 Identities=12% Similarity=0.003 Sum_probs=84.5
Q ss_pred CCCCccCHHHhccCCCCccchhhhhhHHHHHHH--HHHHHHHHHHHhccCCCceEEEeCCCCCCccccc------CCCCC
Q 021091 63 PEPLFVDPYAGCLVPPDVQMDLKKYSHHYCLTT--KFIDDKLLRTVNHMDGLKQVVLLTDGMDTRPYRL------NWPTS 134 (317)
Q Consensus 63 ~~~lf~DP~A~~l~~~~~~~~~~~~~~~~~~RT--r~iDd~l~~~i~~~~g~~QVV~LGAGLDTRa~RL------~~~~~ 134 (317)
|..+|+|..-..+...+.. ...++..|| .+++....+..+..+....+|-||||--+. -|+ .....
T Consensus 31 p~k~~YD~~Gs~LFe~It~-----lpEYYptr~E~~iL~~~~~~Ia~~i~~~~~lIELGsG~~~K-t~~LL~aL~~~~~~ 104 (319)
T TIGR03439 31 PTLLLYDDEGLKLFEEITY-----SPEYYLTNDEIEILKKHSSDIAASIPSGSMLVELGSGNLRK-VGILLEALERQKKS 104 (319)
T ss_pred ChHhhhcchHHHHHHHHHc-----CCccCChHHHHHHHHHHHHHHHHhcCCCCEEEEECCCchHH-HHHHHHHHHhcCCC
Confidence 4458887766665554321 111222332 233333322222223345899999996543 222 12235
Q ss_pred cEEEEechh-hhHHHHHHHHhhcCCCCCCcceE--EeecCCCchHHHHHHhcCCCCCCCEEEEEcCC-C-CCCHHHHHHH
Q 021091 135 TIIFDISPE-RIFKISAEKLEGVGAKIPRSCLF--LHVPLESSNIQQALRAKGFNGNRPSVWAIQGL-P-VMTLASFEDV 209 (317)
Q Consensus 135 ~~~fEVD~P-~v~~~K~~~L~~~~~~~p~~~~~--v~vdld~~dw~~~L~~~Gfd~~~Ptl~i~EGv-~-YL~~~~v~~L 209 (317)
++|+=||.- +.++.-.+.|... ..| .... +..|++ +-...|... -.+..|.++++-|- + -+++++...+
T Consensus 105 ~~Y~plDIS~~~L~~a~~~L~~~--~~p-~l~v~~l~gdy~--~~l~~l~~~-~~~~~~r~~~flGSsiGNf~~~ea~~f 178 (319)
T TIGR03439 105 VDYYALDVSRSELQRTLAELPLG--NFS-HVRCAGLLGTYD--DGLAWLKRP-ENRSRPTTILWLGSSIGNFSRPEAAAF 178 (319)
T ss_pred ceEEEEECCHHHHHHHHHhhhhc--cCC-CeEEEEEEecHH--HHHhhcccc-cccCCccEEEEeCccccCCCHHHHHHH
Confidence 889999985 3444444444411 112 3444 344444 222333221 11456889999997 5 5999999999
Q ss_pred HHHHHh-ccCCCcEEE--EeCc
Q 021091 210 LLLVGS-LAMNKCLFL--GELP 228 (317)
Q Consensus 210 l~~ia~-ls~~gS~l~--~d~~ 228 (317)
|+.+++ ...||..++ +|..
T Consensus 179 L~~~~~~~l~~~d~lLiG~D~~ 200 (319)
T TIGR03439 179 LAGFLATALSPSDSFLIGLDGC 200 (319)
T ss_pred HHHHHHhhCCCCCEEEEecCCC
Confidence 999999 776777654 5754
No 18
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=88.44 E-value=4.1 Score=37.10 Aligned_cols=100 Identities=9% Similarity=0.018 Sum_probs=65.9
Q ss_pred ceEEEeCCCCCCccccc----CCCCCcEEEEech-hhhHHHHHHHHhhcCCCCCCcceEEeecCCCchHHHHHHhcCCCC
Q 021091 113 KQVVLLTDGMDTRPYRL----NWPTSTIIFDISP-ERIFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQALRAKGFNG 187 (317)
Q Consensus 113 ~QVV~LGAGLDTRa~RL----~~~~~~~~fEVD~-P~v~~~K~~~L~~~~~~~p~~~~~v~vdld~~dw~~~L~~~Gfd~ 187 (317)
..|+-+|||-=.-...+ ..| +.+++=+|. |++++.-++.++..+. ..+++++..|+..-. +
T Consensus 55 ~~iLDlGcG~G~~~~~l~~~~~~p-~~~v~gvD~s~~ml~~a~~~~~~~~~--~~~v~~~~~d~~~~~---------~-- 120 (239)
T TIGR00740 55 SNVYDLGCSRGAATLSARRNINQP-NVKIIGIDNSQPMVERCRQHIAAYHS--EIPVEILCNDIRHVE---------I-- 120 (239)
T ss_pred CEEEEecCCCCHHHHHHHHhcCCC-CCeEEEEeCCHHHHHHHHHHHHhcCC--CCCeEEEECChhhCC---------C--
Confidence 47999999876544333 233 578888888 7787766666655421 125677776665211 1
Q ss_pred CCCEEEEEcCC-CCCCHHHHHHHHHHHHhccCCCcEEEEe
Q 021091 188 NRPSVWAIQGL-PVMTLASFEDVLLLVGSLAMNKCLFLGE 226 (317)
Q Consensus 188 ~~Ptl~i~EGv-~YL~~~~v~~Ll~~ia~ls~~gS~l~~d 226 (317)
....++++-.+ .|++.++...+++.+.+...||+.+++.
T Consensus 121 ~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~ 160 (239)
T TIGR00740 121 KNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLS 160 (239)
T ss_pred CCCCEEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEe
Confidence 12335666666 4898888889999999988888876543
No 19
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=87.12 E-value=5.1 Score=36.92 Aligned_cols=100 Identities=10% Similarity=0.053 Sum_probs=64.9
Q ss_pred ceEEEeCCCCCCccccc----CCCCCcEEEEech-hhhHHHHHHHHhhcCCCCCCcceEEeecCCCchHHHHHHhcCCCC
Q 021091 113 KQVVLLTDGMDTRPYRL----NWPTSTIIFDISP-ERIFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQALRAKGFNG 187 (317)
Q Consensus 113 ~QVV~LGAGLDTRa~RL----~~~~~~~~fEVD~-P~v~~~K~~~L~~~~~~~p~~~~~v~vdld~~dw~~~L~~~Gfd~ 187 (317)
..|+-+|||.=.-...+ ..| +.+++=||. |++++.-++.+...+. +.+++++..|+..-. ...+
T Consensus 58 ~~vLDlGcGtG~~~~~l~~~~~~~-~~~v~gvD~S~~ml~~A~~~~~~~~~--~~~v~~~~~d~~~~~------~~~~-- 126 (247)
T PRK15451 58 TQVYDLGCSLGAATLSVRRNIHHD-NCKIIAIDNSPAMIERCRRHIDAYKA--PTPVDVIEGDIRDIA------IENA-- 126 (247)
T ss_pred CEEEEEcccCCHHHHHHHHhcCCC-CCeEEEEeCCHHHHHHHHHHHHhcCC--CCCeEEEeCChhhCC------CCCC--
Confidence 58999999976533222 223 578899997 7888776666665432 236777777764211 0112
Q ss_pred CCCEEEEEcCC-CCCCHHHHHHHHHHHHhccCCCcEEE-Ee
Q 021091 188 NRPSVWAIQGL-PVMTLASFEDVLLLVGSLAMNKCLFL-GE 226 (317)
Q Consensus 188 ~~Ptl~i~EGv-~YL~~~~v~~Ll~~ia~ls~~gS~l~-~d 226 (317)
-++++-.+ .+++.++...+++.|.+...||+.++ .|
T Consensus 127 ---D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 127 ---SMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred ---CEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 24444444 47888888899999999888887654 45
No 20
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=85.59 E-value=7 Score=38.49 Aligned_cols=126 Identities=13% Similarity=0.076 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHHHhccCCCceEEEeCCCCCCcccccCCCCCcEEEEechhhh-HHHHHHHHhhcCCCC---CCcceEE
Q 021091 92 CLTTKFIDDKLLRTVNHMDGLKQVVLLTDGMDTRPYRLNWPTSTIIFDISPERI-FKISAEKLEGVGAKI---PRSCLFL 167 (317)
Q Consensus 92 ~~RTr~iDd~l~~~i~~~~g~~QVV~LGAGLDTRa~RL~~~~~~~~fEVD~P~v-~~~K~~~L~~~~~~~---p~~~~~v 167 (317)
++-+..|+.+.. ...||..||||-=-=..+.+-.+--.++-+|-.+| ++.-++..+...... .=...++
T Consensus 105 wIKs~LI~~y~~-------~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~ 177 (389)
T KOG1975|consen 105 WIKSVLINLYTK-------RGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFI 177 (389)
T ss_pred HHHHHHHHHHhc-------cccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEE
Confidence 445555655543 34689999998644333332222245888998875 222223333322110 0135678
Q ss_pred eecCCCchHHHHHHhcCCCCCCC--EEEEEcCCC-C--CCHHHHHHHHHHHHhccCCCcEEEEeCch
Q 021091 168 HVPLESSNIQQALRAKGFNGNRP--SVWAIQGLP-V--MTLASFEDVLLLVGSLAMNKCLFLGELPA 229 (317)
Q Consensus 168 ~vdld~~dw~~~L~~~Gfd~~~P--tl~i~EGv~-Y--L~~~~v~~Ll~~ia~ls~~gS~l~~d~~~ 229 (317)
..|.....+.+.+. ++.| -++.++-++ | -+++.++..|+.++.+..||..++...|+
T Consensus 178 ~~Dc~~~~l~d~~e-----~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPd 239 (389)
T KOG1975|consen 178 AADCFKERLMDLLE-----FKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPD 239 (389)
T ss_pred EeccchhHHHHhcc-----CCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCc
Confidence 88877666666653 2334 567777775 7 47788999999999999999999999874
No 21
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=85.28 E-value=9.6 Score=33.84 Aligned_cols=97 Identities=5% Similarity=-0.100 Sum_probs=60.7
Q ss_pred ceEEEeCCCCCCcccccCCCCCcEEEEech-hhhHHHHHHHHhhcCCCCCCcceEEeecCCCchHHHHHHhcCCCCCCCE
Q 021091 113 KQVVLLTDGMDTRPYRLNWPTSTIIFDISP-ERIFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQALRAKGFNGNRPS 191 (317)
Q Consensus 113 ~QVV~LGAGLDTRa~RL~~~~~~~~fEVD~-P~v~~~K~~~L~~~~~~~p~~~~~v~vdld~~dw~~~L~~~Gfd~~~Pt 191 (317)
..|+-+|||-=.-+..|... +.++.=+|. |++++.-++.....+. .+++.+..|+...++ ...||
T Consensus 32 ~~vLDiGcG~G~~a~~La~~-g~~V~gvD~S~~~i~~a~~~~~~~~~---~~v~~~~~d~~~~~~-----~~~fD----- 97 (197)
T PRK11207 32 GKTLDLGCGNGRNSLYLAAN-GFDVTAWDKNPMSIANLERIKAAENL---DNLHTAVVDLNNLTF-----DGEYD----- 97 (197)
T ss_pred CcEEEECCCCCHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHHcCC---CcceEEecChhhCCc-----CCCcC-----
Confidence 57999999986555555332 456677776 5666654455554331 135556666542221 11133
Q ss_pred EEEEcCC-CCCCHHHHHHHHHHHHhccCCCcEE
Q 021091 192 VWAIQGL-PVMTLASFEDVLLLVGSLAMNKCLF 223 (317)
Q Consensus 192 l~i~EGv-~YL~~~~v~~Ll~~ia~ls~~gS~l 223 (317)
++++-++ .|++++....+++.+.++..||+.+
T Consensus 98 ~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~ 130 (197)
T PRK11207 98 FILSTVVLMFLEAKTIPGLIANMQRCTKPGGYN 130 (197)
T ss_pred EEEEecchhhCCHHHHHHHHHHHHHHcCCCcEE
Confidence 4555555 4788888999999999999898874
No 22
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=85.24 E-value=8.6 Score=34.12 Aligned_cols=100 Identities=5% Similarity=-0.081 Sum_probs=61.7
Q ss_pred ceEEEeCCCCCCcccccCCCCCcEEEEech-hhhHHHHHHHHhhcCCCCCCcceEEeecCCCchHHHHHHhcCCCCCCCE
Q 021091 113 KQVVLLTDGMDTRPYRLNWPTSTIIFDISP-ERIFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQALRAKGFNGNRPS 191 (317)
Q Consensus 113 ~QVV~LGAGLDTRa~RL~~~~~~~~fEVD~-P~v~~~K~~~L~~~~~~~p~~~~~v~vdld~~dw~~~L~~~Gfd~~~Pt 191 (317)
..|+-+|||.-.-+.-+... +..++=+|. |++++.-++.....+. +.+....|++. +. + + +.--
T Consensus 32 ~~vLDiGcG~G~~a~~la~~-g~~V~~iD~s~~~l~~a~~~~~~~~~----~v~~~~~d~~~--~~--~-----~-~~fD 96 (195)
T TIGR00477 32 CKTLDLGCGQGRNSLYLSLA-GYDVRAWDHNPASIASVLDMKARENL----PLRTDAYDINA--AA--L-----N-EDYD 96 (195)
T ss_pred CcEEEeCCCCCHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHHHhCC----CceeEeccchh--cc--c-----c-CCCC
Confidence 58999999988765555322 345666666 5566654444443321 23444455432 11 1 1 1234
Q ss_pred EEEEcCC-CCCCHHHHHHHHHHHHhccCCCcE-EEEeC
Q 021091 192 VWAIQGL-PVMTLASFEDVLLLVGSLAMNKCL-FLGEL 227 (317)
Q Consensus 192 l~i~EGv-~YL~~~~v~~Ll~~ia~ls~~gS~-l~~d~ 227 (317)
++++-.+ .+++.+....+++.+.++..||+. ++.+.
T Consensus 97 ~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~ 134 (195)
T TIGR00477 97 FIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAA 134 (195)
T ss_pred EEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEEe
Confidence 6666667 478888889999999998889887 44443
No 23
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=83.12 E-value=11 Score=33.57 Aligned_cols=129 Identities=9% Similarity=-0.072 Sum_probs=71.2
Q ss_pred CceEEEeCCCCCCcccccC-CCCCcEEEEech-hhhHHHHHHHHhhcCCCCCCcceEEeecCCCchHHHHHHhcCCCCCC
Q 021091 112 LKQVVLLTDGMDTRPYRLN-WPTSTIIFDISP-ERIFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQALRAKGFNGNR 189 (317)
Q Consensus 112 ~~QVV~LGAGLDTRa~RL~-~~~~~~~fEVD~-P~v~~~K~~~L~~~~~~~p~~~~~v~vdld~~dw~~~L~~~Gfd~~~ 189 (317)
...|+-+|||.=.-..-+. ..++..++-||. |++++.=++.+...+ . .++.++..|+. +.+...+....||
T Consensus 41 ~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~--~-~~v~~~~~d~~-~~l~~~~~~~~~D--- 113 (202)
T PRK00121 41 APIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEG--L-TNLRLLCGDAV-EVLLDMFPDGSLD--- 113 (202)
T ss_pred CCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcC--C-CCEEEEecCHH-HHHHHHcCccccc---
Confidence 3589999999987665552 222466777776 555554444444432 1 25666666551 1222222222232
Q ss_pred CEEEEEcCCCCCCH------HHHHHHHHHHHhccCCCcEEEEeCchhhhhhhcCCCCcchHHHHHHHHhCCCeee
Q 021091 190 PSVWAIQGLPVMTL------ASFEDVLLLVGSLAMNKCLFLGELPAWLAETEFGNKSTTEKWMDKLFMSNGFGVG 258 (317)
Q Consensus 190 Ptl~i~EGv~YL~~------~~v~~Ll~~ia~ls~~gS~l~~d~~~~~~~~~~~~~~~~~~w~~~~l~~~Gw~~~ 258 (317)
.+++.-...+... .....+++.+.+...||+.+++-..... -..++.+.+.+.||.++
T Consensus 114 -~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~----------~~~~~~~~~~~~g~~~~ 177 (202)
T PRK00121 114 -RIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEG----------YAEYMLEVLSAEGGFLV 177 (202)
T ss_pred -eEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHH----------HHHHHHHHHHhCccccc
Confidence 4444322233221 1246788899988889888877643211 01234567788999876
No 24
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=82.57 E-value=12 Score=35.17 Aligned_cols=97 Identities=8% Similarity=-0.014 Sum_probs=62.2
Q ss_pred ceEEEeCCCCCCcccccCCCCCcEEEEech-hhhHHHHHHHHhhcCCCCCCcceEEeecCCCchHHHHHHhcCCCCCCCE
Q 021091 113 KQVVLLTDGMDTRPYRLNWPTSTIIFDISP-ERIFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQALRAKGFNGNRPS 191 (317)
Q Consensus 113 ~QVV~LGAGLDTRa~RL~~~~~~~~fEVD~-P~v~~~K~~~L~~~~~~~p~~~~~v~vdld~~dw~~~L~~~Gfd~~~Pt 191 (317)
..|+-+|||.=.-+..|... +..++=+|. |++++.=++.....+ . +++....|++...+ ...| -
T Consensus 122 ~~vLDlGcG~G~~~~~la~~-g~~V~avD~s~~ai~~~~~~~~~~~--l--~v~~~~~D~~~~~~-----~~~f-----D 186 (287)
T PRK12335 122 GKALDLGCGQGRNSLYLALL-GFDVTAVDINQQSLENLQEIAEKEN--L--NIRTGLYDINSASI-----QEEY-----D 186 (287)
T ss_pred CCEEEeCCCCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHcC--C--ceEEEEechhcccc-----cCCc-----c
Confidence 48999999986544445322 456777776 455554334444332 1 45555666553222 2224 4
Q ss_pred EEEEcCC-CCCCHHHHHHHHHHHHhccCCCcEEE
Q 021091 192 VWAIQGL-PVMTLASFEDVLLLVGSLAMNKCLFL 224 (317)
Q Consensus 192 l~i~EGv-~YL~~~~v~~Ll~~ia~ls~~gS~l~ 224 (317)
++++.++ +|++.+....+++.+.+...||+.++
T Consensus 187 ~I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l 220 (287)
T PRK12335 187 FILSTVVLMFLNRERIPAIIKNMQEHTNPGGYNL 220 (287)
T ss_pred EEEEcchhhhCCHHHHHHHHHHHHHhcCCCcEEE
Confidence 7778888 58898999999999999888988743
No 25
>PRK08317 hypothetical protein; Provisional
Probab=82.44 E-value=34 Score=30.06 Aligned_cols=179 Identities=11% Similarity=0.045 Sum_probs=86.9
Q ss_pred CceEEEeCCCCCCcccccC--CCCCcEEEEechh-hhHHHHHHHHhhcCCCCCCcceEEeecCCCchHHHHHHhcCCCCC
Q 021091 112 LKQVVLLTDGMDTRPYRLN--WPTSTIIFDISPE-RIFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQALRAKGFNGN 188 (317)
Q Consensus 112 ~~QVV~LGAGLDTRa~RL~--~~~~~~~fEVD~P-~v~~~K~~~L~~~~~~~p~~~~~v~vdld~~dw~~~L~~~Gfd~~ 188 (317)
...|+.+|||.-.-...+. .++...++=+|.- ..++.-++..... +.+.+++..|+....+ ...
T Consensus 20 ~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~----~~~~~~~~~d~~~~~~---------~~~ 86 (241)
T PRK08317 20 GDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGL----GPNVEFVRGDADGLPF---------PDG 86 (241)
T ss_pred CCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCC----CCceEEEecccccCCC---------CCC
Confidence 3589999999866444441 2223566666663 3333222221111 2356777777653221 112
Q ss_pred CCEEEEEcCC-CCCCHHHHHHHHHHHHhccCCCcEEEEeCchhhh------------hh---hcC-C-CCcchHHHHHHH
Q 021091 189 RPSVWAIQGL-PVMTLASFEDVLLLVGSLAMNKCLFLGELPAWLA------------ET---EFG-N-KSTTEKWMDKLF 250 (317)
Q Consensus 189 ~Ptl~i~EGv-~YL~~~~v~~Ll~~ia~ls~~gS~l~~d~~~~~~------------~~---~~~-~-~~~~~~w~~~~l 250 (317)
.--++++-.+ .++.. ...+++.+.++..||+.+++..+.+.. .. ... . ......-..+.|
T Consensus 87 ~~D~v~~~~~~~~~~~--~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 164 (241)
T PRK08317 87 SFDAVRSDRVLQHLED--PARALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKILNFWSDHFADPWLGRRLPGLF 164 (241)
T ss_pred CceEEEEechhhccCC--HHHHHHHHHHHhcCCcEEEEEecCCCceeecCCChHHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 2334555444 46543 456788888888888877654322110 00 000 0 111112235788
Q ss_pred HhCCCeeeecCHHHHHHHcCCCCCCC----cchhHHHHHHHhcCchhhhHHHHHHHHHhhh
Q 021091 251 MSNGFGVGMVSYKEVASSLGKELAPG----YYKNILFLAEQLRFSDDQMDTWRRELQRVEE 307 (317)
Q Consensus 251 ~~~Gw~~~~~~~~~~~~~~gr~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (317)
.+.||.........+. .+...+.. .......+....+++.+|.+.|.+++...++
T Consensus 165 ~~aGf~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 223 (241)
T PRK08317 165 REAGLTDIEVEPYTLI--ETDLKEADKGFGLIRAARRAVEAGGISADEADAWLADLAQLAR 223 (241)
T ss_pred HHcCCCceeEEEEEEe--ccCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 9999974211110000 01100000 0111112222467799999999999885443
No 26
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=81.41 E-value=12 Score=33.16 Aligned_cols=125 Identities=10% Similarity=0.075 Sum_probs=65.6
Q ss_pred ceEEEeCCCC--CCcccccCCCCCcEEEEech-hhhHHHHHHHHhhcCCCCCCcceEEeecCCCchHHHHHHhcCCCCCC
Q 021091 113 KQVVLLTDGM--DTRPYRLNWPTSTIIFDISP-ERIFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQALRAKGFNGNR 189 (317)
Q Consensus 113 ~QVV~LGAGL--DTRa~RL~~~~~~~~fEVD~-P~v~~~K~~~L~~~~~~~p~~~~~v~vdld~~dw~~~L~~~Gfd~~~ 189 (317)
..|+.+|||- -+...-...+.+.+++=+|. |+.++.-++.++..+. ..++.++..|.. ++...+ .+.
T Consensus 42 ~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~--~~~v~~~~~d~~--~~l~~~------~~~ 111 (198)
T PRK00377 42 DMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGV--LNNIVLIKGEAP--EILFTI------NEK 111 (198)
T ss_pred CEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCC--CCCeEEEEechh--hhHhhc------CCC
Confidence 5899999976 33332111222346666666 5555543333444331 134555555543 222221 123
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhccCCCcEEEEeCchhhhhhhcCCCCcchHHHHHHHHhCCCeeeecC
Q 021091 190 PSVWAIQGLPVMTLASFEDVLLLVGSLAMNKCLFLGELPAWLAETEFGNKSTTEKWMDKLFMSNGFGVGMVS 261 (317)
Q Consensus 190 Ptl~i~EGv~YL~~~~v~~Ll~~ia~ls~~gS~l~~d~~~~~~~~~~~~~~~~~~w~~~~l~~~Gw~~~~~~ 261 (317)
+-+++..|- ......+++.+.++..||+.++++....- .-....+.|..+||.++...
T Consensus 112 ~D~V~~~~~----~~~~~~~l~~~~~~LkpgG~lv~~~~~~~----------~~~~~~~~l~~~g~~~~~~~ 169 (198)
T PRK00377 112 FDRIFIGGG----SEKLKEIISASWEIIKKGGRIVIDAILLE----------TVNNALSALENIGFNLEITE 169 (198)
T ss_pred CCEEEECCC----cccHHHHHHHHHHHcCCCcEEEEEeecHH----------HHHHHHHHHHHcCCCeEEEE
Confidence 344444332 23456678888887778888888754210 01123467789999766443
No 27
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=81.32 E-value=4.5 Score=38.16 Aligned_cols=136 Identities=15% Similarity=0.107 Sum_probs=87.2
Q ss_pred eEEEeCCCCCCccccc--CCC-CCcEEEEech-hhhHHHHHHHHhhcCCCCCCcceEEeecCCCchHHHHHHhcCCCCCC
Q 021091 114 QVVLLTDGMDTRPYRL--NWP-TSTIIFDISP-ERIFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQALRAKGFNGNR 189 (317)
Q Consensus 114 QVV~LGAGLDTRa~RL--~~~-~~~~~fEVD~-P~v~~~K~~~L~~~~~~~p~~~~~v~vdld~~dw~~~L~~~Gfd~~~ 189 (317)
.|..+|||-=-..|=+ ..+ ++..+|-.|+ |..+ .+++++..-.+.+++-...|++.++|...+...++|.-.
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai----~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it 149 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAI----ELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIIT 149 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHH----HHHHhccccchhhhcccceeccchhccCCCCcCccceEE
Confidence 5788999998777766 222 2599999999 5444 344444333345777777888877776666665555322
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhccCCCcEEEE-eCc-hhhhhhh---------------cC--CCCcchHHHHHHH
Q 021091 190 PSVWAIQGLPVMTLASFEDVLLLVGSLAMNKCLFLG-ELP-AWLAETE---------------FG--NKSTTEKWMDKLF 250 (317)
Q Consensus 190 Ptl~i~EGv~YL~~~~v~~Ll~~ia~ls~~gS~l~~-d~~-~~~~~~~---------------~~--~~~~~~~w~~~~l 250 (317)
-++++ .=+.++..+..++.+..+..||+.++| ||. ..+.-.. .| ....+..-++++|
T Consensus 150 ~IFvL----SAi~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF~~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f 225 (264)
T KOG2361|consen 150 LIFVL----SAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRFKKGQCISENFYVRGDGTRAYFFTEEELDELF 225 (264)
T ss_pred EEEEE----eccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHhccCCceeecceEEccCCceeeeccHHHHHHHH
Confidence 22222 346799999999999999989887765 663 1221110 01 1122445578899
Q ss_pred HhCCCee
Q 021091 251 MSNGFGV 257 (317)
Q Consensus 251 ~~~Gw~~ 257 (317)
...||..
T Consensus 226 ~~agf~~ 232 (264)
T KOG2361|consen 226 TKAGFEE 232 (264)
T ss_pred Hhcccch
Confidence 9999985
No 28
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=80.15 E-value=12 Score=36.15 Aligned_cols=112 Identities=16% Similarity=0.194 Sum_probs=64.3
Q ss_pred HHHHHhccCCCceEEEeCCCCCCcccccCCCCCcEEEEechhhhHHHHHHHHhhcCCCCCCcceEEeecCCCchHHHHHH
Q 021091 102 LLRTVNHMDGLKQVVLLTDGMDTRPYRLNWPTSTIIFDISPERIFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQALR 181 (317)
Q Consensus 102 l~~~i~~~~g~~QVV~LGAGLDTRa~RL~~~~~~~~fEVD~P~v~~~K~~~L~~~~~~~p~~~~~v~vdld~~dw~~~L~ 181 (317)
+...+....| ..|+-+|||.=.-.+++.......++-+|.....-.+.+........ ..+++++..|++. +. +
T Consensus 114 l~~~l~~l~g-~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~-~~~i~~~~~d~e~--lp--~- 186 (322)
T PRK15068 114 VLPHLSPLKG-RTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGN-DQRAHLLPLGIEQ--LP--A- 186 (322)
T ss_pred HHHhhCCCCC-CEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCC-CCCeEEEeCCHHH--CC--C-
Confidence 3444432234 58999999999888888422223588888644322222222221111 1257777777652 11 0
Q ss_pred hcCCCCCCCEEEEEcCCCCCCHHHHHHHHHHHHhccCCCcEEEEe
Q 021091 182 AKGFNGNRPSVWAIQGLPVMTLASFEDVLLLVGSLAMNKCLFLGE 226 (317)
Q Consensus 182 ~~Gfd~~~Ptl~i~EGv~YL~~~~v~~Ll~~ia~ls~~gS~l~~d 226 (317)
...|| ++++-|++|-- .+...+|+.+.+...||+.++++
T Consensus 187 ~~~FD-----~V~s~~vl~H~-~dp~~~L~~l~~~LkpGG~lvl~ 225 (322)
T PRK15068 187 LKAFD-----TVFSMGVLYHR-RSPLDHLKQLKDQLVPGGELVLE 225 (322)
T ss_pred cCCcC-----EEEECChhhcc-CCHHHHHHHHHHhcCCCcEEEEE
Confidence 12243 56677776532 23456888899888899998876
No 29
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=79.11 E-value=22 Score=32.64 Aligned_cols=109 Identities=10% Similarity=0.055 Sum_probs=62.5
Q ss_pred CCceEEEeC--CCCCCcccccCCC--CCcEEEEechhhhHHHHHHHHhhcCCCCCCcceEEeecCCCchHHHHHHhcCCC
Q 021091 111 GLKQVVLLT--DGMDTRPYRLNWP--TSTIIFDISPERIFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQALRAKGFN 186 (317)
Q Consensus 111 g~~QVV~LG--AGLDTRa~RL~~~--~~~~~fEVD~P~v~~~K~~~L~~~~~~~p~~~~~v~vdld~~dw~~~L~~~Gfd 186 (317)
+.+.|+.+| +|+.+...=...+ ..++-+|+|. +.++.-++.++..+.. ++.+++..|.. ++.+.|...+-
T Consensus 68 ~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~-~~~~~A~~n~~~~gl~--~~i~~~~gda~--~~L~~l~~~~~- 141 (234)
T PLN02781 68 NAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDK-EAYEVGLEFIKKAGVD--HKINFIQSDAL--SALDQLLNNDP- 141 (234)
T ss_pred CCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCH-HHHHHHHHHHHHcCCC--CcEEEEEccHH--HHHHHHHhCCC-
Confidence 456899999 5666543221222 2456666664 4555555666666532 35666666654 44555543311
Q ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHHHHhccCCCcEEEEeCch
Q 021091 187 GNRPSVWAIQGLPVMTLASFEDVLLLVGSLAMNKCLFLGELPA 229 (317)
Q Consensus 187 ~~~Ptl~i~EGv~YL~~~~v~~Ll~~ia~ls~~gS~l~~d~~~ 229 (317)
....-++...+- ......++..+..+..||+.+++|-.-
T Consensus 142 ~~~fD~VfiDa~----k~~y~~~~~~~~~ll~~GG~ii~dn~l 180 (234)
T PLN02781 142 KPEFDFAFVDAD----KPNYVHFHEQLLKLVKVGGIIAFDNTL 180 (234)
T ss_pred CCCCCEEEECCC----HHHHHHHHHHHHHhcCCCeEEEEEcCC
Confidence 122334444443 344556777778888899999998643
No 30
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=79.06 E-value=5.1 Score=36.57 Aligned_cols=110 Identities=10% Similarity=0.067 Sum_probs=65.9
Q ss_pred HHHHHhccCCCceEEEeCCCCCCcccccCCCCCcEEEEech-hhhHHHHHHHHhhcCCCCCCcceEEeecCCCchHHHHH
Q 021091 102 LLRTVNHMDGLKQVVLLTDGMDTRPYRLNWPTSTIIFDISP-ERIFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQAL 180 (317)
Q Consensus 102 l~~~i~~~~g~~QVV~LGAGLDTRa~RL~~~~~~~~fEVD~-P~v~~~K~~~L~~~~~~~p~~~~~v~vdld~~dw~~~L 180 (317)
+..++.. +....++-+|||-=..--+|.. .--++.=+|. |..++.-++.+... .++.++..|+- +.|.
T Consensus 35 l~aaLp~-~ry~~alEvGCs~G~lT~~LA~-rCd~LlavDis~~Al~~Ar~Rl~~~-----~~V~~~~~dvp-~~~P--- 103 (201)
T PF05401_consen 35 LLAALPR-RRYRRALEVGCSIGVLTERLAP-RCDRLLAVDISPRALARARERLAGL-----PHVEWIQADVP-EFWP--- 103 (201)
T ss_dssp HHHHHTT-SSEEEEEEE--TTSHHHHHHGG-GEEEEEEEES-HHHHHHHHHHTTT------SSEEEEES-TT-T------
T ss_pred HHHhcCc-cccceeEecCCCccHHHHHHHH-hhCceEEEeCCHHHHHHHHHhcCCC-----CCeEEEECcCC-CCCC---
Confidence 3334432 4578999999998766666631 1123455555 44555555566553 27888888885 3342
Q ss_pred HhcCCCCCCCEEEEEcCCCCCCH-HHHHHHHHHHHhccCCCcEEEEeC
Q 021091 181 RAKGFNGNRPSVWAIQGLPVMTL-ASFEDVLLLVGSLAMNKCLFLGEL 227 (317)
Q Consensus 181 ~~~Gfd~~~Ptl~i~EGv~YL~~-~~v~~Ll~~ia~ls~~gS~l~~d~ 227 (317)
...|| .++++|-+.||+. ++.+.+++.+.+...||..+++-.
T Consensus 104 -~~~FD----LIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~ 146 (201)
T PF05401_consen 104 -EGRFD----LIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGH 146 (201)
T ss_dssp -SS-EE----EEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred -CCCee----EEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 23466 6777764468975 789999999999888888877643
No 31
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=76.87 E-value=4.8 Score=37.54 Aligned_cols=119 Identities=19% Similarity=0.212 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCceEEEeCCCCC--CcccccCCCCCcEEEEech-hhhHHHHHHHHhhcCCCCCCcceE
Q 021091 90 HYCLTTKFIDDKLLRTVNHMDGLKQVVLLTDGMD--TRPYRLNWPTSTIIFDISP-ERIFKISAEKLEGVGAKIPRSCLF 166 (317)
Q Consensus 90 ~~~~RTr~iDd~l~~~i~~~~g~~QVV~LGAGLD--TRa~RL~~~~~~~~fEVD~-P~v~~~K~~~L~~~~~~~p~~~~~ 166 (317)
+-..|||=.-|.+.+.-- ....+||-||||-= |...--.|| +..+.-+|. |+|++.-++.+ | ++++
T Consensus 11 F~~eRtRPa~dLla~Vp~--~~~~~v~DLGCGpGnsTelL~~RwP-~A~i~GiDsS~~Mla~Aa~rl-------p-~~~f 79 (257)
T COG4106 11 FEDERTRPARDLLARVPL--ERPRRVVDLGCGPGNSTELLARRWP-DAVITGIDSSPAMLAKAAQRL-------P-DATF 79 (257)
T ss_pred HHHhccCcHHHHHhhCCc--cccceeeecCCCCCHHHHHHHHhCC-CCeEeeccCCHHHHHHHHHhC-------C-CCce
Confidence 335577777777765321 34679999999864 432222477 588999997 78888655543 2 5777
Q ss_pred EeecCCCchHHHHHHhcCCCCCCCE-EEEEcCCC-CCCHHHHHHHHHHHHhccCCCcEEEEeCchhhh
Q 021091 167 LHVPLESSNIQQALRAKGFNGNRPS-VWAIQGLP-VMTLASFEDVLLLVGSLAMNKCLFLGELPAWLA 232 (317)
Q Consensus 167 v~vdld~~dw~~~L~~~Gfd~~~Pt-l~i~EGv~-YL~~~~v~~Ll~~ia~ls~~gS~l~~d~~~~~~ 232 (317)
...|+. +| .|.+|+ ++.+-.++ .|+. .. .||..+-...+||+.++.-+|++..
T Consensus 80 ~~aDl~--~w---------~p~~~~dllfaNAvlqWlpd-H~-~ll~rL~~~L~Pgg~LAVQmPdN~d 134 (257)
T COG4106 80 EEADLR--TW---------KPEQPTDLLFANAVLQWLPD-HP-ELLPRLVSQLAPGGVLAVQMPDNLD 134 (257)
T ss_pred ecccHh--hc---------CCCCccchhhhhhhhhhccc-cH-HHHHHHHHhhCCCceEEEECCCccC
Confidence 777764 45 344554 44444454 5543 33 3444444445699999999987654
No 32
>PLN02244 tocopherol O-methyltransferase
Probab=75.87 E-value=19 Score=34.90 Aligned_cols=118 Identities=12% Similarity=0.061 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHhc---cCCCceEEEeCCCCCCcccccCCCCCcEEEEech-hhhHHHHHHHHhhcCCCCCCcceEEeecC
Q 021091 96 KFIDDKLLRTVNH---MDGLKQVVLLTDGMDTRPYRLNWPTSTIIFDISP-ERIFKISAEKLEGVGAKIPRSCLFLHVPL 171 (317)
Q Consensus 96 r~iDd~l~~~i~~---~~g~~QVV~LGAGLDTRa~RL~~~~~~~~fEVD~-P~v~~~K~~~L~~~~~~~p~~~~~v~vdl 171 (317)
+.++..+..+--. ......|+-+|||.=.-...|....+..+.=||. |.+++.-++.....+. ..++.++..|+
T Consensus 100 ~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~--~~~v~~~~~D~ 177 (340)
T PLN02244 100 RMIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGL--SDKVSFQVADA 177 (340)
T ss_pred HHHHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCC--CCceEEEEcCc
Confidence 4566665543110 0123589999999876655553211456777776 3444443444444332 23677887776
Q ss_pred CCchHHHHHHhcCCCCCCCEEEEEcCCCCCCHHHHHHHHHHHHhccCCCcEEEE
Q 021091 172 ESSNIQQALRAKGFNGNRPSVWAIQGLPVMTLASFEDVLLLVGSLAMNKCLFLG 225 (317)
Q Consensus 172 d~~dw~~~L~~~Gfd~~~Ptl~i~EGv~YL~~~~v~~Ll~~ia~ls~~gS~l~~ 225 (317)
....+ ....|| .+|..+.+.++.. ...+++.+.....||+.+++
T Consensus 178 ~~~~~----~~~~FD----~V~s~~~~~h~~d--~~~~l~e~~rvLkpGG~lvi 221 (340)
T PLN02244 178 LNQPF----EDGQFD----LVWSMESGEHMPD--KRKFVQELARVAAPGGRIII 221 (340)
T ss_pred ccCCC----CCCCcc----EEEECCchhccCC--HHHHHHHHHHHcCCCcEEEE
Confidence 53211 122344 5555565555532 45678888888888887654
No 33
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=75.71 E-value=13 Score=33.58 Aligned_cols=101 Identities=6% Similarity=-0.067 Sum_probs=60.2
Q ss_pred CceEEEeCCCCCCcccccCCCCCcEEEEechhhhHHHHHHHHhhcCCCCCCcceEEeecCCCchHHHHHHhcCCCCCCCE
Q 021091 112 LKQVVLLTDGMDTRPYRLNWPTSTIIFDISPERIFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQALRAKGFNGNRPS 191 (317)
Q Consensus 112 ~~QVV~LGAGLDTRa~RL~~~~~~~~fEVD~P~v~~~K~~~L~~~~~~~p~~~~~v~vdld~~dw~~~L~~~Gfd~~~Pt 191 (317)
..+++-||||.===+.-|.. .|..|.=+|.-++--.|.+.+.+... . ..+....|++..++.+ -| -
T Consensus 31 ~g~~LDlgcG~GRNalyLA~-~G~~VtAvD~s~~al~~l~~~a~~~~-l--~i~~~~~Dl~~~~~~~-----~y-----D 96 (192)
T PF03848_consen 31 PGKALDLGCGEGRNALYLAS-QGFDVTAVDISPVALEKLQRLAEEEG-L--DIRTRVADLNDFDFPE-----EY-----D 96 (192)
T ss_dssp SSEEEEES-TTSHHHHHHHH-TT-EEEEEESSHHHHHHHHHHHHHTT----TEEEEE-BGCCBS-TT-----TE-----E
T ss_pred CCcEEEcCCCCcHHHHHHHH-CCCeEEEEECCHHHHHHHHHHHhhcC-c--eeEEEEecchhccccC-----Cc-----C
Confidence 45899999997433333432 24566666664443333344443321 1 3666777776544321 13 3
Q ss_pred EEEEcCC-CCCCHHHHHHHHHHHHhccCCCcEEEEe
Q 021091 192 VWAIQGL-PVMTLASFEDVLLLVGSLAMNKCLFLGE 226 (317)
Q Consensus 192 l~i~EGv-~YL~~~~v~~Ll~~ia~ls~~gS~l~~d 226 (317)
++++-+| +||+++...++++.+.+...||+.+++.
T Consensus 97 ~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~ 132 (192)
T PF03848_consen 97 FIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIV 132 (192)
T ss_dssp EEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred EEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEE
Confidence 6777788 6999999999999999988888876653
No 34
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=74.09 E-value=30 Score=24.95 Aligned_cols=99 Identities=13% Similarity=0.009 Sum_probs=54.9
Q ss_pred EEEeCCCCCCcccccCCCCCcEEE--EechhhhHHHHHHHHhhcCCCCCCcceEEeecCCCchHHHHHHhcCCCCCCCEE
Q 021091 115 VVLLTDGMDTRPYRLNWPTSTIIF--DISPERIFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQALRAKGFNGNRPSV 192 (317)
Q Consensus 115 VV~LGAGLDTRa~RL~~~~~~~~f--EVD~P~v~~~K~~~L~~~~~~~p~~~~~v~vdld~~dw~~~L~~~Gfd~~~Ptl 192 (317)
|+.+|||.-.-...+.......++ |++...+...++ ..... ...+..++..|+....+ ..+...-+
T Consensus 2 ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~--------~~~~~~d~ 69 (107)
T cd02440 2 VLDLGCGTGALALALASGPGARVTGVDISPVALELARK-AAAAL---LADNVEVLKGDAEELPP--------EADESFDV 69 (107)
T ss_pred eEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHH-HHhcc---cccceEEEEcChhhhcc--------ccCCceEE
Confidence 678899876554444322234444 444443333332 11111 12356666666542211 12345667
Q ss_pred EEEcCCC-CCCHHHHHHHHHHHHhccCCCcEEEEe
Q 021091 193 WAIQGLP-VMTLASFEDVLLLVGSLAMNKCLFLGE 226 (317)
Q Consensus 193 ~i~EGv~-YL~~~~v~~Ll~~ia~ls~~gS~l~~d 226 (317)
+++-++. ++ .+....+++.+.....+++.+++.
T Consensus 70 i~~~~~~~~~-~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 70 IISDPPLHHL-VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred EEEccceeeh-hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 7777773 33 667788889988888788877654
No 35
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=73.80 E-value=5.5 Score=38.89 Aligned_cols=133 Identities=17% Similarity=0.099 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHHHHhccCCCceEEEeCC--CCCCcccccCCCCCcEEEEechhhhHHHHHHHHhhcCCC----CC---C
Q 021091 92 CLTTKFIDDKLLRTVNHMDGLKQVVLLTD--GMDTRPYRLNWPTSTIIFDISPERIFKISAEKLEGVGAK----IP---R 162 (317)
Q Consensus 92 ~~RTr~iDd~l~~~i~~~~g~~QVV~LGA--GLDTRa~RL~~~~~~~~fEVD~P~v~~~K~~~L~~~~~~----~p---~ 162 (317)
.+-+..|..++....... ....|+-||| |-|..=|.-.......-++++.-.+-+.+.+. .+.... .+ -
T Consensus 44 wvKs~LI~~~~~~~~~~~-~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry-~~~~~~~~~~~~~~~f 121 (331)
T PF03291_consen 44 WVKSVLIQKYAKKVKQNR-PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERY-KQLKKRNNSKQYRFDF 121 (331)
T ss_dssp HHHHHHHHHHCHCCCCTT-TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHH-HHHHTSTT-HTSEECC
T ss_pred HHHHHHHHHHHHhhhccC-CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHH-HHhccccccccccccc
Confidence 556777777765432221 3469999999 58998888754433334455444555555444 221110 00 1
Q ss_pred cceEEeecCCCchHHHHHHhcCCCCCCCEEEEEcCCC-C-C-CHHHHHHHHHHHHhccCCCcEEEEeCch
Q 021091 163 SCLFLHVPLESSNIQQALRAKGFNGNRPSVWAIQGLP-V-M-TLASFEDVLLLVGSLAMNKCLFLGELPA 229 (317)
Q Consensus 163 ~~~~v~vdld~~dw~~~L~~~Gfd~~~Ptl~i~EGv~-Y-L-~~~~v~~Ll~~ia~ls~~gS~l~~d~~~ 229 (317)
.+.++..|.....+.+.+... ...==++.++--+ | + +++.++.+|+.++++..||+.++...|+
T Consensus 122 ~a~f~~~D~f~~~l~~~~~~~---~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d 188 (331)
T PF03291_consen 122 IAEFIAADCFSESLREKLPPR---SRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPD 188 (331)
T ss_dssp EEEEEESTTCCSHHHCTSSST---TS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred hhheeccccccchhhhhcccc---CCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecC
Confidence 234556665544333332211 0122466666665 7 3 7778899999999999999999887763
No 36
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=73.50 E-value=24 Score=32.24 Aligned_cols=116 Identities=19% Similarity=0.232 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHHHHhccCCCceEEEeCCCCCCcccccC--CCCCcEEEEech-hhhHHHHHHHHhhcCCCCCCcceEE
Q 021091 91 YCLTTKFIDDKLLRTVNHMDGLKQVVLLTDGMDTRPYRLN--WPTSTIIFDISP-ERIFKISAEKLEGVGAKIPRSCLFL 167 (317)
Q Consensus 91 ~~~RTr~iDd~l~~~i~~~~g~~QVV~LGAGLDTRa~RL~--~~~~~~~fEVD~-P~v~~~K~~~L~~~~~~~p~~~~~v 167 (317)
...+++...+++...-- .+..+|+-+|||--.-...+. .| +.+++=||. |++++.-++.+ .++.++
T Consensus 13 ~~~~~~~~~~ll~~~~~--~~~~~vLDiGcG~G~~~~~la~~~~-~~~v~gvD~s~~~i~~a~~~~--------~~~~~~ 81 (258)
T PRK01683 13 EDERTRPARDLLARVPL--ENPRYVVDLGCGPGNSTELLVERWP-AARITGIDSSPAMLAEARSRL--------PDCQFV 81 (258)
T ss_pred HHHhhcHHHHHHhhCCC--cCCCEEEEEcccCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHhC--------CCCeEE
Confidence 34556666666654321 234689999999886554552 33 467888887 45554333221 246677
Q ss_pred eecCCCchHHHHHHhcCCCCCCCEEEEEcCCCCCCHHHHHHHHHHHHhccCCCcEEEEeCc
Q 021091 168 HVPLESSNIQQALRAKGFNGNRPSVWAIQGLPVMTLASFEDVLLLVGSLAMNKCLFLGELP 228 (317)
Q Consensus 168 ~vdld~~dw~~~L~~~Gfd~~~Ptl~i~EGv~YL~~~~v~~Ll~~ia~ls~~gS~l~~d~~ 228 (317)
..|+. +|. ....|| .++....+.+++. ...+++.+.+...||+.+++..+
T Consensus 82 ~~d~~--~~~---~~~~fD----~v~~~~~l~~~~d--~~~~l~~~~~~LkpgG~~~~~~~ 131 (258)
T PRK01683 82 EADIA--SWQ---PPQALD----LIFANASLQWLPD--HLELFPRLVSLLAPGGVLAVQMP 131 (258)
T ss_pred ECchh--ccC---CCCCcc----EEEEccChhhCCC--HHHHHHHHHHhcCCCcEEEEECC
Confidence 77664 331 111233 4444444346643 35788888888888998887653
No 37
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=71.64 E-value=15 Score=34.79 Aligned_cols=117 Identities=9% Similarity=0.049 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHhccCCCceEEEeCCCCCCcccccCCCCCcEEEEechhh-hHHHHHHHHhhcCCCCCCcceEEeecCCCc
Q 021091 96 KFIDDKLLRTVNHMDGLKQVVLLTDGMDTRPYRLNWPTSTIIFDISPER-IFKISAEKLEGVGAKIPRSCLFLHVPLESS 174 (317)
Q Consensus 96 r~iDd~l~~~i~~~~g~~QVV~LGAGLDTRa~RL~~~~~~~~fEVD~P~-v~~~K~~~L~~~~~~~p~~~~~v~vdld~~ 174 (317)
+-+|.++.++ .-.+| .-|+-+|||-=.-+.++..-.++++.=|.+-+ -.++-++.+++.+ .++++..+..|..
T Consensus 49 ~k~~~~~~~~-~l~~G-~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~g--l~~~v~v~~~D~~-- 122 (273)
T PF02353_consen 49 RKLDLLCEKL-GLKPG-DRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAG--LEDRVEVRLQDYR-- 122 (273)
T ss_dssp HHHHHHHTTT-T--TT--EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCST--SSSTEEEEES-GG--
T ss_pred HHHHHHHHHh-CCCCC-CEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcC--CCCceEEEEeecc--
Confidence 4466665554 21244 48999999988888888422256666666533 3333344555554 2345666665543
Q ss_pred hHHHHHHhcCCCCCCCEEEEEcCCCCCCHHHHHHHHHHHHhccCCCcEEEEeC
Q 021091 175 NIQQALRAKGFNGNRPSVWAIQGLPVMTLASFEDVLLLVGSLAMNKCLFLGEL 227 (317)
Q Consensus 175 dw~~~L~~~Gfd~~~Ptl~i~EGv~YL~~~~v~~Ll~~ia~ls~~gS~l~~d~ 227 (317)
++.. .|| -++.+|.+-.+..+....+++.+.++..||+.++...
T Consensus 123 ~~~~-----~fD----~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~ 166 (273)
T PF02353_consen 123 DLPG-----KFD----RIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQT 166 (273)
T ss_dssp G--------S-S----EEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEE
T ss_pred ccCC-----CCC----EEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEe
Confidence 3322 466 4666766557788888999999999999999887653
No 38
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=71.05 E-value=39 Score=30.37 Aligned_cols=109 Identities=12% Similarity=0.115 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHhccCCCceEEEeCCCCCCcccccC-CCCCcEEEEech-hhhHHHHHHHHhhcCCCCCCcceEEeecCCC
Q 021091 96 KFIDDKLLRTVNHMDGLKQVVLLTDGMDTRPYRLN-WPTSTIIFDISP-ERIFKISAEKLEGVGAKIPRSCLFLHVPLES 173 (317)
Q Consensus 96 r~iDd~l~~~i~~~~g~~QVV~LGAGLDTRa~RL~-~~~~~~~fEVD~-P~v~~~K~~~L~~~~~~~p~~~~~v~vdld~ 173 (317)
.+++..+... +....|+-+|||.=.....|. ..++..++=||. |++++.-++.++ +..++..|+..
T Consensus 32 ~~~~~~l~~~----~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~--------~~~~~~~d~~~ 99 (204)
T TIGR03587 32 AMFARALNRL----PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP--------NINIIQGSLFD 99 (204)
T ss_pred HHHHHHHHhc----CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC--------CCcEEEeeccC
Confidence 4455554432 334579999999876554452 212466777775 455554333221 23455555432
Q ss_pred chHHHHHHhcCCCCCCCEEEEEcCCC-CCCHHHHHHHHHHHHhccCCCcEEEEeC
Q 021091 174 SNIQQALRAKGFNGNRPSVWAIQGLP-VMTLASFEDVLLLVGSLAMNKCLFLGEL 227 (317)
Q Consensus 174 ~dw~~~L~~~Gfd~~~Ptl~i~EGv~-YL~~~~v~~Ll~~ia~ls~~gS~l~~d~ 227 (317)
.+..+.--++++-+++ +++++.....++.+.+.+ .+-.++.++
T Consensus 100 ----------~~~~~sfD~V~~~~vL~hl~p~~~~~~l~el~r~~-~~~v~i~e~ 143 (204)
T TIGR03587 100 ----------PFKDNFFDLVLTKGVLIHINPDNLPTAYRELYRCS-NRYILIAEY 143 (204)
T ss_pred ----------CCCCCCEEEEEECChhhhCCHHHHHHHHHHHHhhc-CcEEEEEEe
Confidence 1222334567788885 789888999999999986 344556665
No 39
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=70.76 E-value=24 Score=35.57 Aligned_cols=100 Identities=12% Similarity=0.099 Sum_probs=63.0
Q ss_pred ceEEEeCCCCCCcccccCCCCCcEEEEech-hhhHHHHHHHHhhcCCCCCCcceEEeecCCCchHHHHHHhcCCCCCCCE
Q 021091 113 KQVVLLTDGMDTRPYRLNWPTSTIIFDISP-ERIFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQALRAKGFNGNRPS 191 (317)
Q Consensus 113 ~QVV~LGAGLDTRa~RL~~~~~~~~fEVD~-P~v~~~K~~~L~~~~~~~p~~~~~v~vdld~~dw~~~L~~~Gfd~~~Pt 191 (317)
..|+-+|||.=.-..-|... ...++-||. |++++..++ .... ..+..++..|+...++ .+..+..-
T Consensus 39 ~~vLDlGcG~G~~~~~la~~-~~~v~giD~s~~~l~~a~~-~~~~----~~~i~~~~~d~~~~~~-------~~~~~~fD 105 (475)
T PLN02336 39 KSVLELGAGIGRFTGELAKK-AGQVIALDFIESVIKKNES-INGH----YKNVKFMCADVTSPDL-------NISDGSVD 105 (475)
T ss_pred CEEEEeCCCcCHHHHHHHhh-CCEEEEEeCCHHHHHHHHH-Hhcc----CCceEEEEeccccccc-------CCCCCCEE
Confidence 47999999987554444221 235677775 445543222 2211 1256777777753222 12233445
Q ss_pred EEEEcCC-CCCCHHHHHHHHHHHHhccCCCcEEEE
Q 021091 192 VWAIQGL-PVMTLASFEDVLLLVGSLAMNKCLFLG 225 (317)
Q Consensus 192 l~i~EGv-~YL~~~~v~~Ll~~ia~ls~~gS~l~~ 225 (317)
++++.++ .|++.++...+++.+.+...||+.+++
T Consensus 106 ~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~ 140 (475)
T PLN02336 106 LIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFF 140 (475)
T ss_pred EEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEE
Confidence 7777777 589888899999999998888888765
No 40
>PLN02366 spermidine synthase
Probab=70.26 E-value=37 Score=32.83 Aligned_cols=45 Identities=13% Similarity=0.180 Sum_probs=30.0
Q ss_pred CCCceEEEeCCCCCCccccc-CCC--CCcEEEEechhhhHHHHHHHHhh
Q 021091 110 DGLKQVVLLTDGMDTRPYRL-NWP--TSTIIFDISPERIFKISAEKLEG 155 (317)
Q Consensus 110 ~g~~QVV~LGAGLDTRa~RL-~~~--~~~~~fEVD~P~v~~~K~~~L~~ 155 (317)
+..+.|+++|+|-=.-+.-+ ..| ..++++|+| |+|++.-++.+..
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD-~~Vi~~ar~~f~~ 137 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEID-KMVIDVSKKFFPD 137 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECC-HHHHHHHHHhhhh
Confidence 45678999999965433222 334 357889999 5677776666654
No 41
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=70.16 E-value=30 Score=33.68 Aligned_cols=123 Identities=11% Similarity=0.069 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHHHhccC------CCceEEEeCCCCCCcccccCCCCCcEEEEech-hhhHHHHHHHHhhcCCCCCCcce
Q 021091 93 LTTKFIDDKLLRTVNHMD------GLKQVVLLTDGMDTRPYRLNWPTSTIIFDISP-ERIFKISAEKLEGVGAKIPRSCL 165 (317)
Q Consensus 93 ~RTr~iDd~l~~~i~~~~------g~~QVV~LGAGLDTRa~RL~~~~~~~~fEVD~-P~v~~~K~~~L~~~~~~~p~~~~ 165 (317)
.|-.++.+.+.+.+.... ....|+-+|||-=.-...|... +..++=||. +++++.-++.....+. ..++.
T Consensus 107 ~R~~~i~~~l~~~~~~~~~~~~~~~g~~ILDIGCG~G~~s~~La~~-g~~V~GID~s~~~i~~Ar~~~~~~~~--~~~i~ 183 (322)
T PLN02396 107 TRLAFIRSTLCRHFSKDPSSAKPFEGLKFIDIGCGGGLLSEPLARM-GATVTGVDAVDKNVKIARLHADMDPV--TSTIE 183 (322)
T ss_pred HHHHHHHHHHHHHhccchhhccCCCCCEEEEeeCCCCHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHhcCc--cccee
Confidence 466777766655543110 1137999999987654444332 456777776 4555544433322211 12566
Q ss_pred EEeecCCCchHHHHHHhcCCCCCCCEEEEEcCCCCCCHHHHHHHHHHHHhccCCCcEEEEeCc
Q 021091 166 FLHVPLESSNIQQALRAKGFNGNRPSVWAIQGLPVMTLASFEDVLLLVGSLAMNKCLFLGELP 228 (317)
Q Consensus 166 ~v~vdld~~dw~~~L~~~Gfd~~~Ptl~i~EGv~YL~~~~v~~Ll~~ia~ls~~gS~l~~d~~ 228 (317)
++..+++ ++. .....|| .++..+.+-.+.. ...+++.+.++..||+.+++..+
T Consensus 184 ~~~~dae--~l~--~~~~~FD----~Vi~~~vLeHv~d--~~~~L~~l~r~LkPGG~liist~ 236 (322)
T PLN02396 184 YLCTTAE--KLA--DEGRKFD----AVLSLEVIEHVAN--PAEFCKSLSALTIPNGATVLSTI 236 (322)
T ss_pred EEecCHH--Hhh--hccCCCC----EEEEhhHHHhcCC--HHHHHHHHHHHcCCCcEEEEEEC
Confidence 6666653 221 1122354 5555554434543 24688888888889988887653
No 42
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=69.92 E-value=35 Score=31.78 Aligned_cols=106 Identities=17% Similarity=0.143 Sum_probs=65.2
Q ss_pred CCceEEEeCCCCCCcccccCCCCCcEEEEechh-hhHHHHHHHHhhcCCCCCCcce-EEeecCCCchHHHHHHhcCCCCC
Q 021091 111 GLKQVVLLTDGMDTRPYRLNWPTSTIIFDISPE-RIFKISAEKLEGVGAKIPRSCL-FLHVPLESSNIQQALRAKGFNGN 188 (317)
Q Consensus 111 g~~QVV~LGAGLDTRa~RL~~~~~~~~fEVD~P-~v~~~K~~~L~~~~~~~p~~~~-~v~vdld~~dw~~~L~~~Gfd~~ 188 (317)
+..-|+.+|||--+-+=-.+|.++.++.-+|.- .+-++-.+-..+. . |.++. ++..+.+ ++ ..|.+..+|
T Consensus 76 ~K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~--k-~~~~~~fvva~ge--~l-~~l~d~s~D-- 147 (252)
T KOG4300|consen 76 GKGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEK--K-PLQVERFVVADGE--NL-PQLADGSYD-- 147 (252)
T ss_pred CccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhc--c-CcceEEEEeechh--cC-cccccCCee--
Confidence 455679999999886655577678999999984 4444444444443 2 33565 5555544 32 234433344
Q ss_pred CCEEEEEcCCCCCCHHHHHHHHHHHHhccCCCcEEEE-eCc
Q 021091 189 RPSVWAIQGLPVMTLASFEDVLLLVGSLAMNKCLFLG-ELP 228 (317)
Q Consensus 189 ~Ptl~i~EGv~YL~~~~v~~Ll~~ia~ls~~gS~l~~-d~~ 228 (317)
|++-.-++ -+.++..+.|+.+.++..||.++.| ++.
T Consensus 148 --tVV~TlvL--CSve~~~k~L~e~~rlLRpgG~iifiEHv 184 (252)
T KOG4300|consen 148 --TVVCTLVL--CSVEDPVKQLNEVRRLLRPGGRIIFIEHV 184 (252)
T ss_pred --eEEEEEEE--eccCCHHHHHHHHHHhcCCCcEEEEEecc
Confidence 44433333 2445567788889998889887654 553
No 43
>PRK06202 hypothetical protein; Provisional
Probab=67.92 E-value=57 Score=29.38 Aligned_cols=102 Identities=14% Similarity=0.084 Sum_probs=58.7
Q ss_pred CCceEEEeCCCCCCcccccC-----CCCCcEEEEech-hhhHHHHHHHHhhcCCCCCCcceEEeecCCCchHHHHHHhcC
Q 021091 111 GLKQVVLLTDGMDTRPYRLN-----WPTSTIIFDISP-ERIFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQALRAKG 184 (317)
Q Consensus 111 g~~QVV~LGAGLDTRa~RL~-----~~~~~~~fEVD~-P~v~~~K~~~L~~~~~~~p~~~~~v~vdld~~dw~~~L~~~G 184 (317)
+...|+-||||.-.-...|. .+.+.+++=+|. |++++.-++..... +..++..+.+. +.. ....
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~------~~~~~~~~~~~--l~~--~~~~ 129 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRP------GVTFRQAVSDE--LVA--EGER 129 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccC------CCeEEEEeccc--ccc--cCCC
Confidence 34589999999976444441 122468999997 67766544332211 34455444431 110 1112
Q ss_pred CCCCCCEEEEEcCCCCCCHHHHHHHHHHHHhccCCCcEEEEeC
Q 021091 185 FNGNRPSVWAIQGLPVMTLASFEDVLLLVGSLAMNKCLFLGEL 227 (317)
Q Consensus 185 fd~~~Ptl~i~EGv~YL~~~~v~~Ll~~ia~ls~~gS~l~~d~ 227 (317)
|| .++...++-+++.++...+|+.+.+.. .|..++.|.
T Consensus 130 fD----~V~~~~~lhh~~d~~~~~~l~~~~r~~-~~~~~i~dl 167 (232)
T PRK06202 130 FD----VVTSNHFLHHLDDAEVVRLLADSAALA-RRLVLHNDL 167 (232)
T ss_pred cc----EEEECCeeecCChHHHHHHHHHHHHhc-CeeEEEecc
Confidence 32 444444445788887888999999876 355555554
No 44
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=67.12 E-value=1.2e+02 Score=29.31 Aligned_cols=132 Identities=14% Similarity=0.093 Sum_probs=71.8
Q ss_pred ceEEEeCCCCCCcccccCCCCCcEEEEech-hhhHHHHHHHHhhcCCC--CCCcceEEeecCCCchHHHHHHhcCCCCCC
Q 021091 113 KQVVLLTDGMDTRPYRLNWPTSTIIFDISP-ERIFKISAEKLEGVGAK--IPRSCLFLHVPLESSNIQQALRAKGFNGNR 189 (317)
Q Consensus 113 ~QVV~LGAGLDTRa~RL~~~~~~~~fEVD~-P~v~~~K~~~L~~~~~~--~p~~~~~v~vdld~~dw~~~L~~~Gfd~~~ 189 (317)
..|+-+|||-=.-...|... +..++=+|. |++++.-++..+..... ...+..+...|+. + + ...||
T Consensus 146 ~~VLDlGcGtG~~a~~la~~-g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~--~----l-~~~fD--- 214 (315)
T PLN02585 146 VTVCDAGCGTGSLAIPLALE-GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLE--S----L-SGKYD--- 214 (315)
T ss_pred CEEEEecCCCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchh--h----c-CCCcC---
Confidence 48999999987655555332 467888887 45665544444433110 0013455555542 1 1 12354
Q ss_pred CEEEEEcCC-CCCCHHHHHHHHHHHHhccCCCcEEEEeCch-hhhh----hh---cCC------CCcchHHHHHHHHhCC
Q 021091 190 PSVWAIQGL-PVMTLASFEDVLLLVGSLAMNKCLFLGELPA-WLAE----TE---FGN------KSTTEKWMDKLFMSNG 254 (317)
Q Consensus 190 Ptl~i~EGv-~YL~~~~v~~Ll~~ia~ls~~gS~l~~d~~~-~~~~----~~---~~~------~~~~~~w~~~~l~~~G 254 (317)
++++-.+ .+++.+....+++.+..+. +|..++...+. +... .. .+. ...+...+.++|.++|
T Consensus 215 --~Vv~~~vL~H~p~~~~~~ll~~l~~l~-~g~liIs~~p~~~~~~~l~~~g~~~~g~~~~~r~y~~s~eel~~lL~~AG 291 (315)
T PLN02585 215 --TVTCLDVLIHYPQDKADGMIAHLASLA-EKRLIISFAPKTLYYDILKRIGELFPGPSKATRAYLHAEADVERALKKAG 291 (315)
T ss_pred --EEEEcCEEEecCHHHHHHHHHHHHhhc-CCEEEEEeCCcchHHHHHHHHHhhcCCCCcCceeeeCCHHHHHHHHHHCC
Confidence 4444444 5777777788899898875 44444432232 1111 00 011 0113455678999999
Q ss_pred Ceee
Q 021091 255 FGVG 258 (317)
Q Consensus 255 w~~~ 258 (317)
|++.
T Consensus 292 f~v~ 295 (315)
T PLN02585 292 WKVA 295 (315)
T ss_pred CEEE
Confidence 9974
No 45
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=66.41 E-value=70 Score=28.33 Aligned_cols=98 Identities=14% Similarity=0.104 Sum_probs=56.0
Q ss_pred CceEEEeCCCCCCcccccCCCCCcEEEEech-hhhHHHHHHHHhhcCCCCCCcceEEeecCCCchHHHHHHhcCCCCCCC
Q 021091 112 LKQVVLLTDGMDTRPYRLNWPTSTIIFDISP-ERIFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQALRAKGFNGNRP 190 (317)
Q Consensus 112 ~~QVV~LGAGLDTRa~RL~~~~~~~~fEVD~-P~v~~~K~~~L~~~~~~~p~~~~~v~vdld~~dw~~~L~~~Gfd~~~P 190 (317)
...|+-+|||.-.-...|.. .+..++=+|. |++++.-++.+...+. ..+.+++..|+.. . ...||
T Consensus 64 ~~~vLDvGcG~G~~~~~l~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~--~~~i~~~~~d~~~------~-~~~fD---- 129 (230)
T PRK07580 64 GLRILDAGCGVGSLSIPLAR-RGAKVVASDISPQMVEEARERAPEAGL--AGNITFEVGDLES------L-LGRFD---- 129 (230)
T ss_pred CCEEEEEeCCCCHHHHHHHH-cCCEEEEEECCHHHHHHHHHHHHhcCC--ccCcEEEEcCchh------c-cCCcC----
Confidence 35899999998754445521 1234666665 4455544444444322 1256667666431 1 12243
Q ss_pred EEEEEcCC-CCCCHHHHHHHHHHHHhccCCCcEEE
Q 021091 191 SVWAIQGL-PVMTLASFEDVLLLVGSLAMNKCLFL 224 (317)
Q Consensus 191 tl~i~EGv-~YL~~~~v~~Ll~~ia~ls~~gS~l~ 224 (317)
++++-++ .+++.+....+++.+.....++..+.
T Consensus 130 -~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~i~ 163 (230)
T PRK07580 130 -TVVCLDVLIHYPQEDAARMLAHLASLTRGSLIFT 163 (230)
T ss_pred -EEEEcchhhcCCHHHHHHHHHHHHhhcCCeEEEE
Confidence 4444455 47788888999999988764333333
No 46
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=65.44 E-value=23 Score=30.89 Aligned_cols=109 Identities=11% Similarity=0.020 Sum_probs=48.8
Q ss_pred CceEEEeCCCCCCcccccC-CCCCcEEEEechhhhHHHHHHHHhhcCCCCCCcceEEeecCCCchHHHHHHhcCCCCCCC
Q 021091 112 LKQVVLLTDGMDTRPYRLN-WPTSTIIFDISPERIFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQALRAKGFNGNRP 190 (317)
Q Consensus 112 ~~QVV~LGAGLDTRa~RL~-~~~~~~~fEVD~P~v~~~K~~~L~~~~~~~p~~~~~v~vdld~~dw~~~L~~~Gfd~~~P 190 (317)
...|+.||||.=--..-+. .....+++=-|.++++..=+.-++..+.....++.....+-.. +...... ++..+
T Consensus 46 ~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~-~~~~~~~----~~~~~ 120 (173)
T PF10294_consen 46 GKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGD-ELDSDLL----EPHSF 120 (173)
T ss_dssp TSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS--HHHHHH----S-SSB
T ss_pred CceEEEECCccchhHHHHHhccCCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecC-ccccccc----ccccC
Confidence 3589999998542221111 1123556667777766644444443321122244444444322 1112222 22334
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhccCCCcEEEEe
Q 021091 191 SVWAIQGLPVMTLASFEDVLLLVGSLAMNKCLFLGE 226 (317)
Q Consensus 191 tl~i~EGv~YL~~~~v~~Ll~~ia~ls~~gS~l~~d 226 (317)
-++|+=-|+|. ++....|++.|..+..+++.++.-
T Consensus 121 D~IlasDv~Y~-~~~~~~L~~tl~~ll~~~~~vl~~ 155 (173)
T PF10294_consen 121 DVILASDVLYD-EELFEPLVRTLKRLLKPNGKVLLA 155 (173)
T ss_dssp SEEEEES--S--GGGHHHHHHHHHHHBTT-TTEEEE
T ss_pred CEEEEecccch-HHHHHHHHHHHHHHhCCCCEEEEE
Confidence 45555555586 477899999999988776654443
No 47
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=64.98 E-value=1e+02 Score=30.97 Aligned_cols=131 Identities=11% Similarity=-0.022 Sum_probs=71.5
Q ss_pred CceEEEeCCCCCCcccccCCCCCcEEEEech-hhhHHHHHHHHhhcCCCCCCcceEEeecCCCchHHHHHHhcCCCCCCC
Q 021091 112 LKQVVLLTDGMDTRPYRLNWPTSTIIFDISP-ERIFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQALRAKGFNGNRP 190 (317)
Q Consensus 112 ~~QVV~LGAGLDTRa~RL~~~~~~~~fEVD~-P~v~~~K~~~L~~~~~~~p~~~~~v~vdld~~dw~~~L~~~Gfd~~~P 190 (317)
...|+-+|||.=.-+..|....+.+++=+|. |+.++.-++.... ...++.++..|+.... +..+.-
T Consensus 267 ~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~----~~~~v~~~~~d~~~~~---------~~~~~f 333 (475)
T PLN02336 267 GQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIG----RKCSVEFEVADCTKKT---------YPDNSF 333 (475)
T ss_pred CCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhc----CCCceEEEEcCcccCC---------CCCCCE
Confidence 3579999999875555553212456777776 4454432222211 1125667777765321 111233
Q ss_pred EEEEEcCC-CCCCHHHHHHHHHHHHhccCCCcEEEEe-Cch-hh------hhhh--cCCCCcchHHHHHHHHhCCCee
Q 021091 191 SVWAIQGL-PVMTLASFEDVLLLVGSLAMNKCLFLGE-LPA-WL------AETE--FGNKSTTEKWMDKLFMSNGFGV 257 (317)
Q Consensus 191 tl~i~EGv-~YL~~~~v~~Ll~~ia~ls~~gS~l~~d-~~~-~~------~~~~--~~~~~~~~~w~~~~l~~~Gw~~ 257 (317)
-++++-++ .++.. -..+++.+.+...||+.+++. +.. .. .... .+..........+++.++||.+
T Consensus 334 D~I~s~~~l~h~~d--~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~aGF~~ 409 (475)
T PLN02336 334 DVIYSRDTILHIQD--KPALFRSFFKWLKPGGKVLISDYCRSPGTPSPEFAEYIKQRGYDLHDVQAYGQMLKDAGFDD 409 (475)
T ss_pred EEEEECCcccccCC--HHHHHHHHHHHcCCCeEEEEEEeccCCCCCcHHHHHHHHhcCCCCCCHHHHHHHHHHCCCee
Confidence 46667666 45643 357888899988898887654 321 00 0000 1111223333467888999986
No 48
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=64.90 E-value=2.9 Score=32.25 Aligned_cols=30 Identities=13% Similarity=0.099 Sum_probs=18.2
Q ss_pred EEEEcCC-CCCCHHHHHHHHHHHHhccCCCcEE
Q 021091 192 VWAIQGL-PVMTLASFEDVLLLVGSLAMNKCLF 223 (317)
Q Consensus 192 l~i~EGv-~YL~~~~v~~Ll~~ia~ls~~gS~l 223 (317)
+|++=+| .|+ ++...+++.+.++..||+.+
T Consensus 69 ~V~~~~vl~~l--~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 69 LVVASNVLHHL--EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp EEEEE-TTS----S-HHHHHHHHTTT-TSS-EE
T ss_pred eehhhhhHhhh--hhHHHHHHHHHHHcCCCCCC
Confidence 4444466 477 77789999999998898764
No 49
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=63.07 E-value=75 Score=29.72 Aligned_cols=111 Identities=11% Similarity=0.114 Sum_probs=63.4
Q ss_pred CCceEEEeC--CCCCCcccccCCCC--CcEEEEechhhhHHHHHHHHhhcCCCCCCcceEEeecCCCchHHHHHHhcCCC
Q 021091 111 GLKQVVLLT--DGMDTRPYRLNWPT--STIIFDISPERIFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQALRAKGFN 186 (317)
Q Consensus 111 g~~QVV~LG--AGLDTRa~RL~~~~--~~~~fEVD~P~v~~~K~~~L~~~~~~~p~~~~~v~vdld~~dw~~~L~~~Gfd 186 (317)
+.+.|+.+| .|+.|..+=...|. .+.-+|.| |+..+.-++.++..+.. ++.+++..+.. +....|...|-.
T Consensus 79 ~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~-~~~~~~Ar~~~~~ag~~--~~I~~~~G~a~--e~L~~l~~~~~~ 153 (247)
T PLN02589 79 NAKNTMEIGVYTGYSLLATALALPEDGKILAMDIN-RENYELGLPVIQKAGVA--HKIDFREGPAL--PVLDQMIEDGKY 153 (247)
T ss_pred CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCC-HHHHHHHHHHHHHCCCC--CceEEEeccHH--HHHHHHHhcccc
Confidence 467899999 67777644333333 35556665 56777777888877632 35666666543 445555443210
Q ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHHHHhccCCCcEEEEeCchh
Q 021091 187 GNRPSVWAIQGLPVMTLASFEDVLLLVGSLAMNKCLFLGELPAW 230 (317)
Q Consensus 187 ~~~Ptl~i~EGv~YL~~~~v~~Ll~~ia~ls~~gS~l~~d~~~~ 230 (317)
.+.==++..-+- .......+..+-.+..+|+.+++|-.-|
T Consensus 154 ~~~fD~iFiDad----K~~Y~~y~~~~l~ll~~GGviv~DNvl~ 193 (247)
T PLN02589 154 HGTFDFIFVDAD----KDNYINYHKRLIDLVKVGGVIGYDNTLW 193 (247)
T ss_pred CCcccEEEecCC----HHHhHHHHHHHHHhcCCCeEEEEcCCCC
Confidence 011113333332 3344455566667778999999996433
No 50
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=62.09 E-value=14 Score=35.31 Aligned_cols=106 Identities=9% Similarity=0.135 Sum_probs=54.2
Q ss_pred ceEEEeCCC-CCCcccccC--CCCCcEEEEech-hhhHHHHHHHHhhcCCCCCCcceEEeecCCCchHHHHHHhcCCCCC
Q 021091 113 KQVVLLTDG-MDTRPYRLN--WPTSTIIFDISP-ERIFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQALRAKGFNGN 188 (317)
Q Consensus 113 ~QVV~LGAG-LDTRa~RL~--~~~~~~~fEVD~-P~v~~~K~~~L~~~~~~~p~~~~~v~vdld~~dw~~~L~~~Gfd~~ 188 (317)
..|+.+|+| |=-.+.-|. ...++.+..+|. |+..+.-++++..... ...+..++..|... ....|. .||
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~-L~~~m~f~~~d~~~--~~~dl~--~~D-- 194 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLG-LSKRMSFITADVLD--VTYDLK--EYD-- 194 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---H-H-SSEEEEES-GGG--G-GG------S--
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhccc-ccCCeEEEecchhc--cccccc--cCC--
Confidence 589999999 333344442 123566666665 5566666677772211 12467788877652 111222 243
Q ss_pred CCEEEEEcCCCCCCHHHHHHHHHHHHhccCCCcEEEEeCc
Q 021091 189 RPSVWAIQGLPVMTLASFEDVLLLVGSLAMNKCLFLGELP 228 (317)
Q Consensus 189 ~Ptl~i~EGv~YL~~~~v~~Ll~~ia~ls~~gS~l~~d~~ 228 (317)
++|++-=| .++.+.-.++|+.|.+..+||+.+++=+.
T Consensus 195 --vV~lAalV-g~~~e~K~~Il~~l~~~m~~ga~l~~Rsa 231 (276)
T PF03059_consen 195 --VVFLAALV-GMDAEPKEEILEHLAKHMAPGARLVVRSA 231 (276)
T ss_dssp --EEEE-TT--S----SHHHHHHHHHHHS-TTSEEEEEE-
T ss_pred --EEEEhhhc-ccccchHHHHHHHHHhhCCCCcEEEEecc
Confidence 66666555 78888889999999999999999988754
No 51
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=61.10 E-value=37 Score=31.37 Aligned_cols=100 Identities=10% Similarity=0.008 Sum_probs=57.4
Q ss_pred ceEEEeCCCCCCccccc--CCCCCcEEEEech-hhhHHHHHHHHhhcCCCCCCcceEEeecCCCchHHHHHHhcCCCCCC
Q 021091 113 KQVVLLTDGMDTRPYRL--NWPTSTIIFDISP-ERIFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQALRAKGFNGNR 189 (317)
Q Consensus 113 ~QVV~LGAGLDTRa~RL--~~~~~~~~fEVD~-P~v~~~K~~~L~~~~~~~p~~~~~v~vdld~~dw~~~L~~~Gfd~~~ 189 (317)
..|+.+|||--.-.+-+ ......+++-+|. |++++.-++.....+. .+..++..|+..-. +...+|
T Consensus 79 ~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~---~~v~~~~~d~~~l~----~~~~~f---- 147 (272)
T PRK11873 79 ETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGY---TNVEFRLGEIEALP----VADNSV---- 147 (272)
T ss_pred CEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCC---CCEEEEEcchhhCC----CCCCce----
Confidence 58999999985322222 1122357888887 6666665555554432 25566666553211 111123
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhccCCCcEEEE
Q 021091 190 PSVWAIQGLPVMTLASFEDVLLLVGSLAMNKCLFLG 225 (317)
Q Consensus 190 Ptl~i~EGv~YL~~~~v~~Ll~~ia~ls~~gS~l~~ 225 (317)
-++++.+++.+.+ +...+++.+.+...||..+++
T Consensus 148 -D~Vi~~~v~~~~~-d~~~~l~~~~r~LkpGG~l~i 181 (272)
T PRK11873 148 -DVIISNCVINLSP-DKERVFKEAFRVLKPGGRFAI 181 (272)
T ss_pred -eEEEEcCcccCCC-CHHHHHHHHHHHcCCCcEEEE
Confidence 3667777754433 235678888888888887654
No 52
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=59.16 E-value=55 Score=31.72 Aligned_cols=132 Identities=11% Similarity=0.050 Sum_probs=70.4
Q ss_pred ceEEEeCCCCCCcccccCCCCCcEEEEechhh-hHHHHHHHHhhcCCCCCCcceEEeecCCCchHHHHHHhcCCCCCCCE
Q 021091 113 KQVVLLTDGMDTRPYRLNWPTSTIIFDISPER-IFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQALRAKGFNGNRPS 191 (317)
Q Consensus 113 ~QVV~LGAGLDTRa~RL~~~~~~~~fEVD~P~-v~~~K~~~L~~~~~~~p~~~~~v~vdld~~dw~~~L~~~Gfd~~~Pt 191 (317)
..|+-+|||--.-.+++.......++-||.-. ++.. .+..+..... ..++++...++. ++.. ...||
T Consensus 123 ~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q-~~~~~~~~~~-~~~v~~~~~~ie--~lp~---~~~FD----- 190 (314)
T TIGR00452 123 RTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQ-FEAVRKLLDN-DKRAILEPLGIE--QLHE---LYAFD----- 190 (314)
T ss_pred CEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHH-HHHHHHHhcc-CCCeEEEECCHH--HCCC---CCCcC-----
Confidence 58999999987666676322223688899744 3321 1111111001 125666666653 2211 11244
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhccCCCcEEEEeCc---hhh------hhhhcCC----CCcchHHHHHHHHhCCCee
Q 021091 192 VWAIQGLPVMTLASFEDVLLLVGSLAMNKCLFLGELP---AWL------AETEFGN----KSTTEKWMDKLFMSNGFGV 257 (317)
Q Consensus 192 l~i~EGv~YL~~~~v~~Ll~~ia~ls~~gS~l~~d~~---~~~------~~~~~~~----~~~~~~w~~~~l~~~Gw~~ 257 (317)
++++.|++|--. +....|+.+.+...||+.++++.. ... ...+..+ --.+...+..+|.++||+.
T Consensus 191 ~V~s~gvL~H~~-dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~flpS~~~L~~~L~~aGF~~ 268 (314)
T TIGR00452 191 TVFSMGVLYHRK-SPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYFIPSVSALKNWLEKVGFEN 268 (314)
T ss_pred EEEEcchhhccC-CHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhccccccCCCHHHHHHHHHHCCCeE
Confidence 566778864322 234578888888889988876531 100 0001000 0112344568899999984
No 53
>PRK00811 spermidine synthase; Provisional
Probab=59.08 E-value=81 Score=29.78 Aligned_cols=108 Identities=10% Similarity=0.154 Sum_probs=56.3
Q ss_pred CCCceEEEeCCCCCCccccc-CCC--CCcEEEEechhhhHHHHHHHHhhcCCCC--CCcceEEeecCCCchHHHHHHhcC
Q 021091 110 DGLKQVVLLTDGMDTRPYRL-NWP--TSTIIFDISPERIFKISAEKLEGVGAKI--PRSCLFLHVPLESSNIQQALRAKG 184 (317)
Q Consensus 110 ~g~~QVV~LGAGLDTRa~RL-~~~--~~~~~fEVD~P~v~~~K~~~L~~~~~~~--p~~~~~v~vdld~~dw~~~L~~~G 184 (317)
+..+.|++||||-=.-+..+ ..+ ..++.+|+|.. +++.-++.++...... ..+++++..|.. .|... ....
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~-vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~--~~l~~-~~~~ 150 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDER-VVEVCRKYLPEIAGGAYDDPRVELVIGDGI--KFVAE-TENS 150 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHH-HHHHHHHHhHHhccccccCCceEEEECchH--HHHhh-CCCc
Confidence 44568999999965433222 332 35888899874 5555555565432110 124556655543 23322 1111
Q ss_pred CCCCCCEEEEEcCC-CCCCHHH--HHHHHHHHHhccCCCcEEEEe
Q 021091 185 FNGNRPSVWAIQGL-PVMTLAS--FEDVLLLVGSLAMNKCLFLGE 226 (317)
Q Consensus 185 fd~~~Ptl~i~EGv-~YL~~~~--v~~Ll~~ia~ls~~gS~l~~d 226 (317)
| =++++... .+-.... ....++.+.+...||+.++..
T Consensus 151 y-----DvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 151 F-----DVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred c-----cEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 3 34444443 3422221 245666677777777777664
No 54
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=58.79 E-value=14 Score=34.99 Aligned_cols=151 Identities=13% Similarity=0.095 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHHhccCCCceEEEeCCCCCCccc-ccCCCCCcEEEEech-hhhHHHHHHHHhhcCCCCCCcceEEeecC
Q 021091 94 TTKFIDDKLLRTVNHMDGLKQVVLLTDGMDTRPY-RLNWPTSTIIFDISP-ERIFKISAEKLEGVGAKIPRSCLFLHVPL 171 (317)
Q Consensus 94 RTr~iDd~l~~~i~~~~g~~QVV~LGAGLDTRa~-RL~~~~~~~~fEVD~-P~v~~~K~~~L~~~~~~~p~~~~~v~vdl 171 (317)
|--.+|++........+...-|+-|||||=+.+. .++.+++++|+=.|. +..+++=.+.+...+ + .......|+
T Consensus 88 Rl~~Ld~fY~~if~~~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~--~--~~~~~v~Dl 163 (251)
T PF07091_consen 88 RLPNLDEFYDEIFGRIPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLG--V--PHDARVRDL 163 (251)
T ss_dssp CGGGHHHHHHHHCCCS---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-----CEEEEEE-T
T ss_pred hhhhHHHHHHHHHhcCCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhC--C--CcceeEeee
Confidence 3446777766544332336789999999998754 335556778877776 456677777777764 1 355555565
Q ss_pred CCchHHHHHHhcCCCCCCCEEEEEcCCCCCCHHHHHHHHHHHHhccCCCcEEEEeCchhhhhh-hcCCCCcchHHHHHHH
Q 021091 172 ESSNIQQALRAKGFNGNRPSVWAIQGLPVMTLASFEDVLLLVGSLAMNKCLFLGELPAWLAET-EFGNKSTTEKWMDKLF 250 (317)
Q Consensus 172 d~~dw~~~L~~~Gfd~~~Ptl~i~EGv~YL~~~~v~~Ll~~ia~ls~~gS~l~~d~~~~~~~~-~~~~~~~~~~w~~~~l 250 (317)
-.+.. ....-...++--++-|....--.-++.+.++-.| .++..+|...... ..++...-..|+++++
T Consensus 164 ~~~~~---------~~~~DlaLllK~lp~le~q~~g~g~~ll~~~~~~--~~vVSfPtrSL~gR~~gm~~~y~~~fe~~~ 232 (251)
T PF07091_consen 164 LSDPP---------KEPADLALLLKTLPCLERQRRGAGLELLDALRSP--HVVVSFPTRSLGGRNKGMEQTYSAWFEALA 232 (251)
T ss_dssp TTSHT---------TSEESEEEEET-HHHHHHHSTTHHHHHHHHSCES--EEEEEEES-------TTHHHCHHHHHHHHC
T ss_pred eccCC---------CCCcchhhHHHHHHHHHHHhcchHHHHHHHhCCC--eEEEeccccccccCccccccCHHHHHHHhc
Confidence 43210 1112234444433334444333345555555323 5666666322111 1223334567889999
Q ss_pred HhCCCeeee
Q 021091 251 MSNGFGVGM 259 (317)
Q Consensus 251 ~~~Gw~~~~ 259 (317)
.+.||.++.
T Consensus 233 ~~~~~~~~~ 241 (251)
T PF07091_consen 233 AERGWIVDR 241 (251)
T ss_dssp CTTCEEEEE
T ss_pred ccCCceeee
Confidence 999999853
No 55
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=58.43 E-value=41 Score=29.88 Aligned_cols=133 Identities=14% Similarity=0.173 Sum_probs=71.1
Q ss_pred eEEEeCCCCCCcccccC--CCCCcEEEEech-hhhHHHHHHHHhhcCCCCCCcceEEeecCCCchHHHHHHhcCCCCCCC
Q 021091 114 QVVLLTDGMDTRPYRLN--WPTSTIIFDISP-ERIFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQALRAKGFNGNRP 190 (317)
Q Consensus 114 QVV~LGAGLDTRa~RL~--~~~~~~~fEVD~-P~v~~~K~~~L~~~~~~~p~~~~~v~vdld~~dw~~~L~~~Gfd~~~P 190 (317)
.|+-+|||.=.-...+. .+ +.+++-+|. |+.++.-++.++..+. ..+++++..|+....+ ...||
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~-~~~v~gid~s~~~~~~a~~~~~~~gl--~~~i~~~~~d~~~~~~-----~~~fD---- 69 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHP-HLQLHGYTISPEQAEVGRERIRALGL--QGRIRIFYRDSAKDPF-----PDTYD---- 69 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhcCC--CcceEEEecccccCCC-----CCCCC----
Confidence 48889999766444542 22 356666666 4555544555555432 2356777777653222 11244
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhccCCCcEEEE-eCchh-hhhhh----cCCCCcchHHHHHHHHhCCCee-eecC
Q 021091 191 SVWAIQGLPVMTLASFEDVLLLVGSLAMNKCLFLG-ELPAW-LAETE----FGNKSTTEKWMDKLFMSNGFGV-GMVS 261 (317)
Q Consensus 191 tl~i~EGv~YL~~~~v~~Ll~~ia~ls~~gS~l~~-d~~~~-~~~~~----~~~~~~~~~w~~~~l~~~Gw~~-~~~~ 261 (317)
.++..+.+..+. +...+|+.+.++..||+.+++ +.... ..... .........| .+.+.++||.+ +..+
T Consensus 70 ~I~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~-~~~l~~~Gf~~~~~~~ 144 (224)
T smart00828 70 LVFGFEVIHHIK--DKMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEW-AELLARNNLRVVEGVD 144 (224)
T ss_pred EeehHHHHHhCC--CHHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHH-HHHHHHCCCeEEEeEE
Confidence 333333332343 356889999998888887664 43211 00000 0011112233 46789999996 4443
No 56
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=58.01 E-value=72 Score=31.64 Aligned_cols=96 Identities=13% Similarity=0.093 Sum_probs=57.7
Q ss_pred ceEEEeCCCCCCcccccCCCCCcEEEEech-hhhHHHHHHHHhhcCCCCCCcceEEeecCCCchHHHHHHhcCCCCCCCE
Q 021091 113 KQVVLLTDGMDTRPYRLNWPTSTIIFDISP-ERIFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQALRAKGFNGNRPS 191 (317)
Q Consensus 113 ~QVV~LGAGLDTRa~RL~~~~~~~~fEVD~-P~v~~~K~~~L~~~~~~~p~~~~~v~vdld~~dw~~~L~~~Gfd~~~Pt 191 (317)
..|+-+|||.=.-+..+....+++++=+|. |+.++.-++..... ..++...|+ .+ + ...||
T Consensus 169 ~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~l------~v~~~~~D~-----~~-l-~~~fD----- 230 (383)
T PRK11705 169 MRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAGL------PVEIRLQDY-----RD-L-NGQFD----- 230 (383)
T ss_pred CEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccC------eEEEEECch-----hh-c-CCCCC-----
Confidence 589999999887666663222467777776 55555433333211 233333332 21 2 12244
Q ss_pred EEEEcCC-CCCCHHHHHHHHHHHHhccCCCcEEEEe
Q 021091 192 VWAIQGL-PVMTLASFEDVLLLVGSLAMNKCLFLGE 226 (317)
Q Consensus 192 l~i~EGv-~YL~~~~v~~Ll~~ia~ls~~gS~l~~d 226 (317)
++++-++ -++.......+++.+.++..||+.+++.
T Consensus 231 ~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~ 266 (383)
T PRK11705 231 RIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLH 266 (383)
T ss_pred EEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEE
Confidence 3444445 3577777788999999999899887664
No 57
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=56.94 E-value=1.6e+02 Score=27.18 Aligned_cols=48 Identities=15% Similarity=0.012 Sum_probs=31.7
Q ss_pred HHHHHHHHhccCCCcEEEEeCchhhhhhhcCCCCcchHHHHHHHHhCCCeeeecCHHHH
Q 021091 207 EDVLLLVGSLAMNKCLFLGELPAWLAETEFGNKSTTEKWMDKLFMSNGFGVGMVSYKEV 265 (317)
Q Consensus 207 ~~Ll~~ia~ls~~gS~l~~d~~~~~~~~~~~~~~~~~~w~~~~l~~~Gw~~~~~~~~~~ 265 (317)
..+++....+..||..+++++.... ... +.+.+..+||..++..-.|+
T Consensus 196 ~~i~~~a~~~L~~gG~l~l~~~~~~----------~~~-v~~~l~~~g~~~~~~~~~~~ 243 (251)
T TIGR03704 196 RRVAAGAPDWLAPGGHLLVETSERQ----------APL-AVEAFARAGLIARVASSEEL 243 (251)
T ss_pred HHHHHHHHHhcCCCCEEEEEECcch----------HHH-HHHHHHHCCCCceeeEcccc
Confidence 4677777788888889888864211 111 45678899999876554443
No 58
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=56.59 E-value=1e+02 Score=30.15 Aligned_cols=113 Identities=14% Similarity=0.156 Sum_probs=63.0
Q ss_pred HHHHHhccCCCceEEEeCCCCCCcccccCCCCCcEEEEechhhhHHHHHHHHhhcCCCCCCcceEEeecCCCchHHHHHH
Q 021091 102 LLRTVNHMDGLKQVVLLTDGMDTRPYRLNWPTSTIIFDISPERIFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQALR 181 (317)
Q Consensus 102 l~~~i~~~~g~~QVV~LGAGLDTRa~RL~~~~~~~~fEVD~P~v~~~K~~~L~~~~~~~p~~~~~v~vdld~~dw~~~L~ 181 (317)
+..++....| +.|+-+|||-==-.|||...+.-.++=+|.-...-..-+.++..-... ....++++.++ ++..
T Consensus 107 l~p~l~~L~g-k~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~-~~~~~lplgvE--~Lp~--- 179 (315)
T PF08003_consen 107 LLPHLPDLKG-KRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQD-PPVFELPLGVE--DLPN--- 179 (315)
T ss_pred HHhhhCCcCC-CEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCC-ccEEEcCcchh--hccc---
Confidence 4445543345 589999999888888995333345777775433222223333321111 13444444443 3332
Q ss_pred hcCCCCCCCEEEEEcCCCCCCHHHHHHHHHHHHhccCCCcEEEEeC
Q 021091 182 AKGFNGNRPSVWAIQGLPVMTLASFEDVLLLVGSLAMNKCLFLGEL 227 (317)
Q Consensus 182 ~~Gfd~~~Ptl~i~EGv~YL~~~~v~~Ll~~ia~ls~~gS~l~~d~ 227 (317)
...|| ++++-||+|=..+-+. .|+.+.+...+|++++.|.
T Consensus 180 ~~~FD-----tVF~MGVLYHrr~Pl~-~L~~Lk~~L~~gGeLvLET 219 (315)
T PF08003_consen 180 LGAFD-----TVFSMGVLYHRRSPLD-HLKQLKDSLRPGGELVLET 219 (315)
T ss_pred cCCcC-----EEEEeeehhccCCHHH-HHHHHHHhhCCCCEEEEEE
Confidence 23476 6788899984333333 3445566556888988774
No 59
>PRK00536 speE spermidine synthase; Provisional
Probab=56.36 E-value=1e+02 Score=29.20 Aligned_cols=104 Identities=13% Similarity=0.137 Sum_probs=63.9
Q ss_pred cCCCceEEEeCCCCCCcccc-c-CCCCCcEEEEechhhhHHHHHHHHhhcCC--C-------------CCCcceEEeec-
Q 021091 109 MDGLKQVVLLTDGMDTRPYR-L-NWPTSTIIFDISPERIFKISAEKLEGVGA--K-------------IPRSCLFLHVP- 170 (317)
Q Consensus 109 ~~g~~QVV~LGAGLDTRa~R-L-~~~~~~~~fEVD~P~v~~~K~~~L~~~~~--~-------------~p~~~~~v~vd- 170 (317)
|+..+.|+++|+| |-=.-| + .++..++..|+|- +|++.-++.++.... . ..+.+..|-+|
T Consensus 70 h~~pk~VLIiGGG-DGg~~REvLkh~~~v~mVeID~-~Vv~~~k~~lP~~~~~~~DpRv~l~~~~~~~~~~~fDVIIvDs 147 (262)
T PRK00536 70 KKELKEVLIVDGF-DLELAHQLFKYDTHVDFVQADE-KILDSFISFFPHFHEVKNNKNFTHAKQLLDLDIKKYDLIICLQ 147 (262)
T ss_pred CCCCCeEEEEcCC-chHHHHHHHCcCCeeEEEECCH-HHHHHHHHHCHHHHHhhcCCCEEEeehhhhccCCcCCEEEEcC
Confidence 4667899999988 533222 2 5556788999997 577776665554321 0 11346667777
Q ss_pred CCCchHHHHHHhcCCCCCCCEEEEEcCC-CCCCHHHHHHHHHHHHhcc
Q 021091 171 LESSNIQQALRAKGFNGNRPSVWAIQGL-PVMTLASFEDVLLLVGSLA 217 (317)
Q Consensus 171 ld~~dw~~~L~~~Gfd~~~Ptl~i~EGv-~YL~~~~v~~Ll~~ia~ls 217 (317)
....+..+.+.++ +.++ =+++.++= +|+.++....+.+.+.+.+
T Consensus 148 ~~~~~fy~~~~~~-L~~~--Gi~v~Qs~sp~~~~~~~~~i~~~l~~~F 192 (262)
T PRK00536 148 EPDIHKIDGLKRM-LKED--GVFISVAKHPLLEHVSMQNALKNMGDFF 192 (262)
T ss_pred CCChHHHHHHHHh-cCCC--cEEEECCCCcccCHHHHHHHHHHHHhhC
Confidence 3333443334332 2222 35566555 6888888888999998876
No 60
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=55.39 E-value=1.5e+02 Score=26.29 Aligned_cols=116 Identities=16% Similarity=0.114 Sum_probs=68.5
Q ss_pred ceEEEeCCCCCC--cccccCCCCCcEEEEech-hhhHHHHHHHHhhcCCCCCCcceEEeecCCCchHHHHHHhcCCCCCC
Q 021091 113 KQVVLLTDGMDT--RPYRLNWPTSTIIFDISP-ERIFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQALRAKGFNGNR 189 (317)
Q Consensus 113 ~QVV~LGAGLDT--Ra~RL~~~~~~~~fEVD~-P~v~~~K~~~L~~~~~~~p~~~~~v~vdld~~dw~~~L~~~Gfd~~~ 189 (317)
..|+-+|||.=. ..+....+ +.+++=+|. +++++.-++..+..+. .+++++..|+.. +. . ...
T Consensus 47 ~~VLDiGcGtG~~al~la~~~~-~~~V~giD~s~~~l~~A~~~~~~~~l---~~i~~~~~d~~~--~~-------~-~~~ 112 (187)
T PRK00107 47 ERVLDVGSGAGFPGIPLAIARP-ELKVTLVDSLGKKIAFLREVAAELGL---KNVTVVHGRAEE--FG-------Q-EEK 112 (187)
T ss_pred CeEEEEcCCCCHHHHHHHHHCC-CCeEEEEeCcHHHHHHHHHHHHHcCC---CCEEEEeccHhh--CC-------C-CCC
Confidence 579999998764 43332334 467888887 6666666666666542 246777776642 11 1 122
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhccCCCcEEEEeCchhhhhhhcCCCCcchHHHHHHHHhCCCeee
Q 021091 190 PSVWAIQGLPVMTLASFEDVLLLVGSLAMNKCLFLGELPAWLAETEFGNKSTTEKWMDKLFMSNGFGVG 258 (317)
Q Consensus 190 Ptl~i~EGv~YL~~~~v~~Ll~~ia~ls~~gS~l~~d~~~~~~~~~~~~~~~~~~w~~~~l~~~Gw~~~ 258 (317)
.-++++-+. .....+++.+.++..||+.+++-...+.. .-+.+....+||.++
T Consensus 113 fDlV~~~~~-----~~~~~~l~~~~~~LkpGG~lv~~~~~~~~-----------~~l~~~~~~~~~~~~ 165 (187)
T PRK00107 113 FDVVTSRAV-----ASLSDLVELCLPLLKPGGRFLALKGRDPE-----------EEIAELPKALGGKVE 165 (187)
T ss_pred ccEEEEccc-----cCHHHHHHHHHHhcCCCeEEEEEeCCChH-----------HHHHHHHHhcCceEe
Confidence 334554442 23466888888888888887766432211 114455677899863
No 61
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=53.08 E-value=1.4e+02 Score=27.69 Aligned_cols=106 Identities=8% Similarity=0.037 Sum_probs=59.2
Q ss_pred CceEEEeCCCCCCcccccC--CCCCcEEEEech-hhhHHHHHHHHhhcCCCCCCcceEEeecCCCchHHHHHHhcCCCCC
Q 021091 112 LKQVVLLTDGMDTRPYRLN--WPTSTIIFDISP-ERIFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQALRAKGFNGN 188 (317)
Q Consensus 112 ~~QVV~LGAGLDTRa~RL~--~~~~~~~fEVD~-P~v~~~K~~~L~~~~~~~p~~~~~v~vdld~~dw~~~L~~~Gfd~~ 188 (317)
...|+-+|||-=.-...+. .+....++=||. |++++.-++...........+.+++..|+.. +. +...-||
T Consensus 74 ~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~--lp--~~~~sfD-- 147 (261)
T PLN02233 74 GDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATD--LP--FDDCYFD-- 147 (261)
T ss_pred CCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEccccc--CC--CCCCCEe--
Confidence 3589999999876555552 222357888887 5666543332221100011256777777652 11 1112233
Q ss_pred CCEEEEEcCCCCCCHHHHHHHHHHHHhccCCCcEE-EEeC
Q 021091 189 RPSVWAIQGLPVMTLASFEDVLLLVGSLAMNKCLF-LGEL 227 (317)
Q Consensus 189 ~Ptl~i~EGv~YL~~~~v~~Ll~~ia~ls~~gS~l-~~d~ 227 (317)
.+++..++..++ +...+++.+.+...||+.+ +.|+
T Consensus 148 --~V~~~~~l~~~~--d~~~~l~ei~rvLkpGG~l~i~d~ 183 (261)
T PLN02233 148 --AITMGYGLRNVV--DRLKAMQEMYRVLKPGSRVSILDF 183 (261)
T ss_pred --EEEEecccccCC--CHHHHHHHHHHHcCcCcEEEEEEC
Confidence 555555554443 3466788888888888875 4565
No 62
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=52.71 E-value=1e+02 Score=29.51 Aligned_cols=150 Identities=15% Similarity=0.126 Sum_probs=85.2
Q ss_pred CCCCccCHHHhccCCCCccchhhhhhHHHHHHHH--HHHHHHHHHHhccCCCceEEEeCCCCCCccccc-C----CCCCc
Q 021091 63 PEPLFVDPYAGCLVPPDVQMDLKKYSHHYCLTTK--FIDDKLLRTVNHMDGLKQVVLLTDGMDTRPYRL-N----WPTST 135 (317)
Q Consensus 63 ~~~lf~DP~A~~l~~~~~~~~~~~~~~~~~~RTr--~iDd~l~~~i~~~~g~~QVV~LGAGLDTRa~RL-~----~~~~~ 135 (317)
|+.+|+|....++..++.. .+.++..||- ++..+-.+. +..-|.+..|.||+|-.|..=+| + ...-.
T Consensus 34 pP~~FYD~~GS~LFe~I~~-----LPEYYpTRtEaaIl~~~a~Ei-a~~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ 107 (321)
T COG4301 34 PPKYFYDDRGSELFEQITR-----LPEYYPTRTEAAILQARAAEI-ASITGACTLVELGSGNSTKTRILLDALAHRGSLL 107 (321)
T ss_pred CCceeecccHHHHHHHHhc-----cccccCchhHHHHHHHHHHHH-HHhhCcceEEEecCCccHHHHHHHHHhhhcCCcc
Confidence 5668888776666554321 1223333431 222222221 11245679999999999876555 1 11236
Q ss_pred EEEEechhhh-HHHH-HHHHhhcCCCCCCcceEEeecCCCchHHHHHHhcCCCCCCCEEEEEcCC-C-CCCHHHHHHHHH
Q 021091 136 IIFDISPERI-FKIS-AEKLEGVGAKIPRSCLFLHVPLESSNIQQALRAKGFNGNRPSVWAIQGL-P-VMTLASFEDVLL 211 (317)
Q Consensus 136 ~~fEVD~P~v-~~~K-~~~L~~~~~~~p~~~~~v~vdld~~dw~~~L~~~Gfd~~~Ptl~i~EGv-~-YL~~~~v~~Ll~ 211 (317)
+++-+|-.+. +.-- ++++.+. | +.....+. .+....|..-- ..-.-+|+.-|- + -|++++-...|.
T Consensus 108 ryvpiDv~a~iL~~ta~ai~~~y----~-~l~v~~l~---~~~~~~La~~~--~~~~Rl~~flGStlGN~tp~e~~~Fl~ 177 (321)
T COG4301 108 RYVPIDVSASILRATATAILREY----P-GLEVNALC---GDYELALAELP--RGGRRLFVFLGSTLGNLTPGECAVFLT 177 (321)
T ss_pred eeeeecccHHHHHHHHHHHHHhC----C-CCeEeehh---hhHHHHHhccc--CCCeEEEEEecccccCCChHHHHHHHH
Confidence 7888887543 3322 2333332 2 23333332 34444444321 233467888887 5 699999999999
Q ss_pred HHHhccCCCcEEE--EeCc
Q 021091 212 LVGSLAMNKCLFL--GELP 228 (317)
Q Consensus 212 ~ia~ls~~gS~l~--~d~~ 228 (317)
.+.+.+.||-.+. .|..
T Consensus 178 ~l~~a~~pGd~~LlGvDl~ 196 (321)
T COG4301 178 QLRGALRPGDYFLLGVDLR 196 (321)
T ss_pred HHHhcCCCcceEEEecccc
Confidence 9999888887644 4554
No 63
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=50.21 E-value=63 Score=26.92 Aligned_cols=103 Identities=16% Similarity=0.178 Sum_probs=65.0
Q ss_pred CceEEEeCCCCCCcccccC--CCCCcEEEEech-hhhHHHHHHHHhhcCCCCCCcceEEeecCCCchHHHHHHhcCCCCC
Q 021091 112 LKQVVLLTDGMDTRPYRLN--WPTSTIIFDISP-ERIFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQALRAKGFNGN 188 (317)
Q Consensus 112 ~~QVV~LGAGLDTRa~RL~--~~~~~~~fEVD~-P~v~~~K~~~L~~~~~~~p~~~~~v~vdld~~dw~~~L~~~Gfd~~ 188 (317)
...|+-||||.=.-.+.|. ..++..++=||. |++++.-++.++..+. .+++++..|+.. +...+. .
T Consensus 4 ~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~---~ni~~~~~d~~~--l~~~~~------~ 72 (152)
T PF13847_consen 4 NKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGL---DNIEFIQGDIED--LPQELE------E 72 (152)
T ss_dssp TSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTS---TTEEEEESBTTC--GCGCSS------T
T ss_pred CCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccc---cccceEEeehhc--cccccC------C
Confidence 3589999999776666663 233577888887 6677766666666542 278899988863 321111 2
Q ss_pred CCEEEEEcCCC-CCCHHHHHHHHHHHHhccCCCcEEEEeC
Q 021091 189 RPSVWAIQGLP-VMTLASFEDVLLLVGSLAMNKCLFLGEL 227 (317)
Q Consensus 189 ~Ptl~i~EGv~-YL~~~~v~~Ll~~ia~ls~~gS~l~~d~ 227 (317)
.--++++-+++ ++... ..+++.+.++..++..++...
T Consensus 73 ~~D~I~~~~~l~~~~~~--~~~l~~~~~~lk~~G~~i~~~ 110 (152)
T PF13847_consen 73 KFDIIISNGVLHHFPDP--EKVLKNIIRLLKPGGILIISD 110 (152)
T ss_dssp TEEEEEEESTGGGTSHH--HHHHHHHHHHEEEEEEEEEEE
T ss_pred CeeEEEEcCchhhccCH--HHHHHHHHHHcCCCcEEEEEE
Confidence 33467777774 45433 467778888776776655443
No 64
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=50.20 E-value=20 Score=26.42 Aligned_cols=91 Identities=12% Similarity=0.039 Sum_probs=47.7
Q ss_pred EeCCCCCCccccc-CCCCCcEEEEechh-hhHHHHHHHHhhcCCCCCCcceEEeecCCCchHHHHHHhcCCCCCCCEEEE
Q 021091 117 LLTDGMDTRPYRL-NWPTSTIIFDISPE-RIFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQALRAKGFNGNRPSVWA 194 (317)
Q Consensus 117 ~LGAGLDTRa~RL-~~~~~~~~fEVD~P-~v~~~K~~~L~~~~~~~p~~~~~v~vdld~~dw~~~L~~~Gfd~~~Ptl~i 194 (317)
-+|||.=.-.-.| +. ++..++=+|.- +.++.=++.... .+..++..|+..-. |..+.=-+++
T Consensus 2 diG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~------~~~~~~~~d~~~l~---------~~~~sfD~v~ 65 (95)
T PF08241_consen 2 DIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKN------EGVSFRQGDAEDLP---------FPDNSFDVVF 65 (95)
T ss_dssp EET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTT------STEEEEESBTTSSS---------S-TT-EEEEE
T ss_pred EecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcccc------cCchheeehHHhCc---------cccccccccc
Confidence 4677744333333 22 34556655553 223322222222 23446666665221 2222333566
Q ss_pred EcCC-CCCCHHHHHHHHHHHHhccCCCcEEEE
Q 021091 195 IQGL-PVMTLASFEDVLLLVGSLAMNKCLFLG 225 (317)
Q Consensus 195 ~EGv-~YL~~~~v~~Ll~~ia~ls~~gS~l~~ 225 (317)
+-++ .|+ ++...+++.+.+...||+.+++
T Consensus 66 ~~~~~~~~--~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 66 SNSVLHHL--EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp EESHGGGS--SHHHHHHHHHHHHEEEEEEEEE
T ss_pred cccceeec--cCHHHHHHHHHHHcCcCeEEeC
Confidence 6666 467 7778899999998888887764
No 65
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=46.80 E-value=1.4e+02 Score=27.37 Aligned_cols=121 Identities=12% Similarity=0.107 Sum_probs=68.7
Q ss_pred HHHHHHHHHhccCCCceEEEeCCCCCCccccc--CCCCCcEEEEechhhhH-HHHHHHHhhcCCCCCCcceEEeecCCCc
Q 021091 98 IDDKLLRTVNHMDGLKQVVLLTDGMDTRPYRL--NWPTSTIIFDISPERIF-KISAEKLEGVGAKIPRSCLFLHVPLESS 174 (317)
Q Consensus 98 iDd~l~~~i~~~~g~~QVV~LGAGLDTRa~RL--~~~~~~~~fEVD~P~v~-~~K~~~L~~~~~~~p~~~~~v~vdld~~ 174 (317)
|=+.|++.+.. .+ ..|+.+|||.=.=+-.+ ..| .++|.=-|..+.. .-=.+.+.+.+. +.-..-+.+|+...
T Consensus 14 Il~vL~~~l~~-~~-~~vLEiaSGtGqHa~~FA~~lP-~l~WqPSD~~~~~~~sI~a~~~~~~~--~Nv~~P~~lDv~~~ 88 (204)
T PF06080_consen 14 ILEVLKQYLPD-SG-TRVLEIASGTGQHAVYFAQALP-HLTWQPSDPDDNLRPSIRAWIAEAGL--PNVRPPLALDVSAP 88 (204)
T ss_pred HHHHHHHHhCc-cC-ceEEEEcCCccHHHHHHHHHCC-CCEEcCCCCChHHHhhHHHHHHhcCC--cccCCCeEeecCCC
Confidence 44566666652 12 24999999987643333 244 5889888876554 222233343321 11112345666655
Q ss_pred hHHHHHHhcCCCCCCCEEEEEcCCC-CCCHHHHHHHHHHHHhccCCCcEEE
Q 021091 175 NIQQALRAKGFNGNRPSVWAIQGLP-VMTLASFEDVLLLVGSLAMNKCLFL 224 (317)
Q Consensus 175 dw~~~L~~~Gfd~~~Ptl~i~EGv~-YL~~~~v~~Ll~~ia~ls~~gS~l~ 224 (317)
.|.-.. .+++.+..--.+++==++ ..+-+.++.||+..+++..+|+.++
T Consensus 89 ~w~~~~-~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~ 138 (204)
T PF06080_consen 89 PWPWEL-PAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLF 138 (204)
T ss_pred CCcccc-ccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEE
Confidence 554322 122223333344443333 6788999999999999988887654
No 66
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=45.95 E-value=83 Score=28.50 Aligned_cols=110 Identities=11% Similarity=0.001 Sum_probs=61.9
Q ss_pred CCceEEEeCCC--CCCcccccCCCCCcEEEEech-hhhHHHHHHHHhhcCCCCCCcceEEeecCCCchHHHHHHhcCCCC
Q 021091 111 GLKQVVLLTDG--MDTRPYRLNWPTSTIIFDISP-ERIFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQALRAKGFNG 187 (317)
Q Consensus 111 g~~QVV~LGAG--LDTRa~RL~~~~~~~~fEVD~-P~v~~~K~~~L~~~~~~~p~~~~~v~vdld~~dw~~~L~~~Gfd~ 187 (317)
+.+.|+.+|+| +.|-.+-...|.+.+++-+|. |+..+.-++.++..+.. ++.+++..|.. +....|...+- .
T Consensus 45 ~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~--~~I~~~~gda~--~~l~~l~~~~~-~ 119 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLD--DRIEVIEGDAL--EVLPELANDGE-E 119 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGG--GGEEEEES-HH--HHHHHHHHTTT-T
T ss_pred CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCC--CcEEEEEeccH--hhHHHHHhccC-C
Confidence 45789999965 555433333444455555554 45666666777776532 35666665543 45566655431 0
Q ss_pred CCCEEEEEcCCCCCCHHHHHHHHHHHHhccCCCcEEEEeCch
Q 021091 188 NRPSVWAIQGLPVMTLASFEDVLLLVGSLAMNKCLFLGELPA 229 (317)
Q Consensus 188 ~~Ptl~i~EGv~YL~~~~v~~Ll~~ia~ls~~gS~l~~d~~~ 229 (317)
+.==++..-+- ..+....++.+-.+..+|+.+++|-.-
T Consensus 120 ~~fD~VFiDa~----K~~y~~y~~~~~~ll~~ggvii~DN~l 157 (205)
T PF01596_consen 120 GQFDFVFIDAD----KRNYLEYFEKALPLLRPGGVIIADNVL 157 (205)
T ss_dssp TSEEEEEEEST----GGGHHHHHHHHHHHEEEEEEEEEETTT
T ss_pred CceeEEEEccc----ccchhhHHHHHhhhccCCeEEEEcccc
Confidence 11123333332 344555666666777799999999643
No 67
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=45.77 E-value=2.2e+02 Score=25.28 Aligned_cols=100 Identities=12% Similarity=0.109 Sum_probs=57.3
Q ss_pred ceEEEeCCCCCCcccccC--CCCCcEEEEech-hhhHHHHHHHHhhcCCCCCCcceEEeecCCCchHHHHHHhcCCCCCC
Q 021091 113 KQVVLLTDGMDTRPYRLN--WPTSTIIFDISP-ERIFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQALRAKGFNGNR 189 (317)
Q Consensus 113 ~QVV~LGAGLDTRa~RL~--~~~~~~~fEVD~-P~v~~~K~~~L~~~~~~~p~~~~~v~vdld~~dw~~~L~~~Gfd~~~ 189 (317)
..|+-+|||.=.-...+. .+++..++=+|. |++++.-++.++..+ . .++.++..|+.... +....||
T Consensus 47 ~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~--~-~~v~~~~~d~~~~~----~~~~~fD--- 116 (231)
T TIGR02752 47 TSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAG--L-HNVELVHGNAMELP----FDDNSFD--- 116 (231)
T ss_pred CEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcC--C-CceEEEEechhcCC----CCCCCcc---
Confidence 589999999776554552 223456666666 566665555555432 1 25667766654211 1122344
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhccCCCcEEEE
Q 021091 190 PSVWAIQGLPVMTLASFEDVLLLVGSLAMNKCLFLG 225 (317)
Q Consensus 190 Ptl~i~EGv~YL~~~~v~~Ll~~ia~ls~~gS~l~~ 225 (317)
.+++..++-+++. ..++++.+.+...||+.+++
T Consensus 117 -~V~~~~~l~~~~~--~~~~l~~~~~~Lk~gG~l~~ 149 (231)
T TIGR02752 117 -YVTIGFGLRNVPD--YMQVLREMYRVVKPGGKVVC 149 (231)
T ss_pred -EEEEecccccCCC--HHHHHHHHHHHcCcCeEEEE
Confidence 4555444434432 35678888887778887653
No 68
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=44.66 E-value=57 Score=26.69 Aligned_cols=105 Identities=11% Similarity=0.068 Sum_probs=57.9
Q ss_pred HHHHHHHHHhccCCCceEEEeCCCCCCccccc-CCCCCcEEEEech-hhhHHHHHHHHhhcCCCCCCcceEEeecCCCch
Q 021091 98 IDDKLLRTVNHMDGLKQVVLLTDGMDTRPYRL-NWPTSTIIFDISP-ERIFKISAEKLEGVGAKIPRSCLFLHVPLESSN 175 (317)
Q Consensus 98 iDd~l~~~i~~~~g~~QVV~LGAGLDTRa~RL-~~~~~~~~fEVD~-P~v~~~K~~~L~~~~~~~p~~~~~v~vdld~~d 175 (317)
+-+.+.+..........|+-+|||.=.-..-| +. +.+++=+|. |.+++. . +......+. .+
T Consensus 9 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~~g~D~~~~~~~~-----~--------~~~~~~~~~--~~ 71 (161)
T PF13489_consen 9 YADLLERLLPRLKPGKRVLDIGCGTGSFLRALAKR--GFEVTGVDISPQMIEK-----R--------NVVFDNFDA--QD 71 (161)
T ss_dssp HHHHHHHHHTCTTTTSEEEEESSTTSHHHHHHHHT--TSEEEEEESSHHHHHH-----T--------TSEEEEEEC--HT
T ss_pred HHHHHHHHhcccCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHhh-----h--------hhhhhhhhh--hh
Confidence 44555555531133569999999974322222 22 336666666 334433 0 111111111 11
Q ss_pred HHHHHHhcCCCCCCCEEEEEcCCC-CCCHHHHHHHHHHHHhccCCCcEEEEeCc
Q 021091 176 IQQALRAKGFNGNRPSVWAIQGLP-VMTLASFEDVLLLVGSLAMNKCLFLGELP 228 (317)
Q Consensus 176 w~~~L~~~Gfd~~~Ptl~i~EGv~-YL~~~~v~~Ll~~ia~ls~~gS~l~~d~~ 228 (317)
+. .. .+.--++++-.++ |++ +...+|+.|.++..||..+++..+
T Consensus 72 ~~--~~-----~~~fD~i~~~~~l~~~~--d~~~~l~~l~~~LkpgG~l~~~~~ 116 (161)
T PF13489_consen 72 PP--FP-----DGSFDLIICNDVLEHLP--DPEEFLKELSRLLKPGGYLVISDP 116 (161)
T ss_dssp HH--CH-----SSSEEEEEEESSGGGSS--HHHHHHHHHHHCEEEEEEEEEEEE
T ss_pred hh--cc-----ccchhhHhhHHHHhhcc--cHHHHHHHHHHhcCCCCEEEEEEc
Confidence 11 11 2233455555664 777 478899999999989988887754
No 69
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=43.81 E-value=37 Score=34.25 Aligned_cols=61 Identities=16% Similarity=0.439 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHhccCCCceEEEeCCCCCCccccc--CCCC--CcEEEEechhhhHHHHH--HHHhhcC
Q 021091 95 TKFIDDKLLRTVNHMDGLKQVVLLTDGMDTRPYRL--NWPT--STIIFDISPERIFKISA--EKLEGVG 157 (317)
Q Consensus 95 Tr~iDd~l~~~i~~~~g~~QVV~LGAGLDTRa~RL--~~~~--~~~~fEVD~P~v~~~K~--~~L~~~~ 157 (317)
.||-+..+--+++..+|.+-|.+||+| |-.+-|= ..|. .++-.|+| |.|+++-+ .+|....
T Consensus 273 ~RYhEsLV~pals~~~~a~~vLvlGGG-DGLAlRellkyP~~~qI~lVdLD-P~miela~~~~vlr~~N 339 (508)
T COG4262 273 YRYHESLVYPALSSVRGARSVLVLGGG-DGLALRELLKYPQVEQITLVDLD-PRMIELASHATVLRALN 339 (508)
T ss_pred hhhhheeeecccccccccceEEEEcCC-chHHHHHHHhCCCcceEEEEecC-HHHHHHhhhhhHhhhhc
Confidence 356665555555444678899999988 7766664 5553 45555555 67887655 6666544
No 70
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=43.40 E-value=1.5e+02 Score=26.08 Aligned_cols=120 Identities=9% Similarity=0.004 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHHhccCCCceEEEeCCCCCCcccccCCCCCcEEEEech-hhhHHHHHHHHhhcCCCCCCcceEEeec
Q 021091 92 CLTTKFIDDKLLRTVNHMDGLKQVVLLTDGMDTRPYRLNWPTSTIIFDISP-ERIFKISAEKLEGVGAKIPRSCLFLHVP 170 (317)
Q Consensus 92 ~~RTr~iDd~l~~~i~~~~g~~QVV~LGAGLDTRa~RL~~~~~~~~fEVD~-P~v~~~K~~~L~~~~~~~p~~~~~v~vd 170 (317)
..|..++.+.+... ........|+.+|||--+-...+... +..+.-+|. |.+++..++.+...+. .+++++..|
T Consensus 27 ~~~~~~i~~~~~~~-~~~~~~~~vLdlG~G~G~~~~~l~~~-~~~v~~iD~s~~~~~~a~~~~~~~~~---~~~~~~~~d 101 (224)
T TIGR01983 27 PLRLDYIRDTIRKN-KKPLFGLRVLDVGCGGGLLSEPLARL-GANVTGIDASEENIEVAKLHAKKDPL---LKIEYRCTS 101 (224)
T ss_pred HHHHHHHHHHHHhc-ccCCCCCeEEEECCCCCHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHHcCC---CceEEEeCC
Confidence 45666777666542 11112357999999976655544221 234555665 3444544444444321 134444444
Q ss_pred CCCchHHHHHHhcCCCCCCCEEEEEcCC-CCCCHHHHHHHHHHHHhccCCCcEEEEe
Q 021091 171 LESSNIQQALRAKGFNGNRPSVWAIQGL-PVMTLASFEDVLLLVGSLAMNKCLFLGE 226 (317)
Q Consensus 171 ld~~dw~~~L~~~Gfd~~~Ptl~i~EGv-~YL~~~~v~~Ll~~ia~ls~~gS~l~~d 226 (317)
+. ++.. .. ++.--++++-.+ .+.. +...+|+.+.+...+|+.+++.
T Consensus 102 ~~--~~~~---~~---~~~~D~i~~~~~l~~~~--~~~~~l~~~~~~L~~gG~l~i~ 148 (224)
T TIGR01983 102 VE--DLAE---KG---AKSFDVVTCMEVLEHVP--DPQAFIRACAQLLKPGGILFFS 148 (224)
T ss_pred HH--Hhhc---CC---CCCccEEEehhHHHhCC--CHHHHHHHHHHhcCCCcEEEEE
Confidence 32 2211 10 122234444444 3443 3356788888877787776654
No 71
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=41.47 E-value=1.6e+02 Score=25.84 Aligned_cols=96 Identities=10% Similarity=0.053 Sum_probs=54.5
Q ss_pred ceEEEeCCCCCCccccc--CCCCCcEEEEech-hhhHHHHHHHHhhcCCCCCCcceEEeecCCCchHHHHHHhcCCCCCC
Q 021091 113 KQVVLLTDGMDTRPYRL--NWPTSTIIFDISP-ERIFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQALRAKGFNGNR 189 (317)
Q Consensus 113 ~QVV~LGAGLDTRa~RL--~~~~~~~~fEVD~-P~v~~~K~~~L~~~~~~~p~~~~~v~vdld~~dw~~~L~~~Gfd~~~ 189 (317)
..|+-+|||--.-...+ ..+ ...++=+|. |+++..-++.+. .++.++..|+.... +....
T Consensus 36 ~~vLDlG~G~G~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~-------~~~~~~~~d~~~~~---------~~~~~ 98 (240)
T TIGR02072 36 ASVLDIGCGTGYLTRALLKRFP-QAEFIALDISAGMLAQAKTKLS-------ENVQFICGDAEKLP---------LEDSS 98 (240)
T ss_pred CeEEEECCCccHHHHHHHHhCC-CCcEEEEeChHHHHHHHHHhcC-------CCCeEEecchhhCC---------CCCCc
Confidence 47999999987543333 222 344555554 344433222221 25667777665221 11223
Q ss_pred CEEEEEcCCC-CCCHHHHHHHHHHHHhccCCCcEEEEeC
Q 021091 190 PSVWAIQGLP-VMTLASFEDVLLLVGSLAMNKCLFLGEL 227 (317)
Q Consensus 190 Ptl~i~EGv~-YL~~~~v~~Ll~~ia~ls~~gS~l~~d~ 227 (317)
.-++++-.++ ++. +...+|+.+.++..||..+++..
T Consensus 99 fD~vi~~~~l~~~~--~~~~~l~~~~~~L~~~G~l~~~~ 135 (240)
T TIGR02072 99 FDLIVSNLALQWCD--DLSQALSELARVLKPGGLLAFST 135 (240)
T ss_pred eeEEEEhhhhhhcc--CHHHHHHHHHHHcCCCcEEEEEe
Confidence 3456666664 553 34568888998888888877654
No 72
>PLN02476 O-methyltransferase
Probab=39.98 E-value=3.4e+02 Score=25.91 Aligned_cols=110 Identities=9% Similarity=0.047 Sum_probs=63.8
Q ss_pred CCceEEEeCCCCCCccccc--CCCCCcEEEEech-hhhHHHHHHHHhhcCCCCCCcceEEeecCCCchHHHHHHhcCCCC
Q 021091 111 GLKQVVLLTDGMDTRPYRL--NWPTSTIIFDISP-ERIFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQALRAKGFNG 187 (317)
Q Consensus 111 g~~QVV~LGAGLDTRa~RL--~~~~~~~~fEVD~-P~v~~~K~~~L~~~~~~~p~~~~~v~vdld~~dw~~~L~~~Gfd~ 187 (317)
+.+.|+.+|+|.=--+..+ ..+.+-.++-+|. |+..+.-++.+++.+.. ++.+++..|.. +....|...|-+
T Consensus 118 ~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~--~~I~li~GdA~--e~L~~l~~~~~~- 192 (278)
T PLN02476 118 GAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVS--HKVNVKHGLAA--ESLKSMIQNGEG- 192 (278)
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC--CcEEEEEcCHH--HHHHHHHhcccC-
Confidence 4678999998766554455 2333334555554 35666667777777643 35666666543 344455432210
Q ss_pred CCCEEEEEcCCCCCCHHHHHHHHHHHHhccCCCcEEEEeCch
Q 021091 188 NRPSVWAIQGLPVMTLASFEDVLLLVGSLAMNKCLFLGELPA 229 (317)
Q Consensus 188 ~~Ptl~i~EGv~YL~~~~v~~Ll~~ia~ls~~gS~l~~d~~~ 229 (317)
+.-=++..-+ ...+....++.+-.+..+|+.+++|-.-
T Consensus 193 ~~FD~VFIDa----~K~~Y~~y~e~~l~lL~~GGvIV~DNvL 230 (278)
T PLN02476 193 SSYDFAFVDA----DKRMYQDYFELLLQLVRVGGVIVMDNVL 230 (278)
T ss_pred CCCCEEEECC----CHHHHHHHHHHHHHhcCCCcEEEEecCc
Confidence 1111333333 2455677777777888899999999543
No 73
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=38.53 E-value=2.5e+02 Score=23.98 Aligned_cols=120 Identities=13% Similarity=0.020 Sum_probs=65.7
Q ss_pred ceEEEeCCCCCCcccccCCCCCcEEEEech-hhhHHHHHHHHhhcCCCCCCcceEEeecCCCchHHHHHHhcCCCCCCCE
Q 021091 113 KQVVLLTDGMDTRPYRLNWPTSTIIFDISP-ERIFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQALRAKGFNGNRPS 191 (317)
Q Consensus 113 ~QVV~LGAGLDTRa~RL~~~~~~~~fEVD~-P~v~~~K~~~L~~~~~~~p~~~~~v~vdld~~dw~~~L~~~Gfd~~~Pt 191 (317)
..|+.||||.=.-...+..... +++-+|. |++++.-++.+...+ .+...+..|+.. .+. +..-
T Consensus 21 ~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~----~~~~~~~~d~~~-----~~~------~~fD 84 (179)
T TIGR00537 21 DDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLNN----VGLDVVMTDLFK-----GVR------GKFD 84 (179)
T ss_pred CeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcC----CceEEEEccccc-----ccC------Cccc
Confidence 4699999999876655543222 6777775 666665444444432 134445555421 110 1122
Q ss_pred EEEEcCCCCCCH---------------------HHHHHHHHHHHhccCCCcEEEEeCchhhhhhhcCCCCcchHHHHHHH
Q 021091 192 VWAIQGLPVMTL---------------------ASFEDVLLLVGSLAMNKCLFLGELPAWLAETEFGNKSTTEKWMDKLF 250 (317)
Q Consensus 192 l~i~EGv~YL~~---------------------~~v~~Ll~~ia~ls~~gS~l~~d~~~~~~~~~~~~~~~~~~w~~~~l 250 (317)
++++- .+|.+. +....+++.+.++..||+.+++-... ..+.....++|
T Consensus 85 ~Vi~n-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~----------~~~~~~~~~~l 153 (179)
T TIGR00537 85 VILFN-PPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSS----------LNGEPDTFDKL 153 (179)
T ss_pred EEEEC-CCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEec----------cCChHHHHHHH
Confidence 33322 124211 12466788888888888876654321 01133456778
Q ss_pred HhCCCeeee
Q 021091 251 MSNGFGVGM 259 (317)
Q Consensus 251 ~~~Gw~~~~ 259 (317)
.++||..+.
T Consensus 154 ~~~gf~~~~ 162 (179)
T TIGR00537 154 DERGFRYEI 162 (179)
T ss_pred HhCCCeEEE
Confidence 999999754
No 74
>PRK04457 spermidine synthase; Provisional
Probab=36.14 E-value=3.2e+02 Score=25.46 Aligned_cols=106 Identities=10% Similarity=0.092 Sum_probs=55.4
Q ss_pred CCceEEEeCCCCCCcc--cccCCCC-CcEEEEechhhhHHHHHHHHhhcCCCCCCcceEEeecCCCchHHHHHHhcCCCC
Q 021091 111 GLKQVVLLTDGMDTRP--YRLNWPT-STIIFDISPERIFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQALRAKGFNG 187 (317)
Q Consensus 111 g~~QVV~LGAGLDTRa--~RL~~~~-~~~~fEVD~P~v~~~K~~~L~~~~~~~p~~~~~v~vdld~~dw~~~L~~~Gfd~ 187 (317)
..+.|+.||+|-=+-+ +.-..|. .++.+|+|. ++++.-++.+...+ ..++++.+..|.. ++..... ..|
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp-~vi~~A~~~f~~~~--~~~rv~v~~~Da~--~~l~~~~-~~y-- 137 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINP-QVIAVARNHFELPE--NGERFEVIEADGA--EYIAVHR-HST-- 137 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCH-HHHHHHHHHcCCCC--CCCceEEEECCHH--HHHHhCC-CCC--
Confidence 4467999998876543 3223343 456666665 46655444443221 1125666655542 3332211 123
Q ss_pred CCCEEEEEcCC-C-CCCHH-HHHHHHHHHHhccCCCcEEEEeC
Q 021091 188 NRPSVWAIQGL-P-VMTLA-SFEDVLLLVGSLAMNKCLFLGEL 227 (317)
Q Consensus 188 ~~Ptl~i~EGv-~-YL~~~-~v~~Ll~~ia~ls~~gS~l~~d~ 227 (317)
-+++..+. . +.++. ....+++.+.++..||+.+++..
T Consensus 138 ---D~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~ 177 (262)
T PRK04457 138 ---DVILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNL 177 (262)
T ss_pred ---CEEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEc
Confidence 34444432 1 22211 13567788888778888988875
No 75
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=34.02 E-value=1.8e+02 Score=31.38 Aligned_cols=127 Identities=11% Similarity=-0.003 Sum_probs=68.6
Q ss_pred ceEEEeCCCCCCcccccCCC-C-CcEEEEechhhhHHHHHHHHhhcCCCCCCcceEEeecCCCchHHHHHHhcCCCCCCC
Q 021091 113 KQVVLLTDGMDTRPYRLNWP-T-STIIFDISPERIFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQALRAKGFNGNRP 190 (317)
Q Consensus 113 ~QVV~LGAGLDTRa~RL~~~-~-~~~~fEVD~P~v~~~K~~~L~~~~~~~p~~~~~v~vdld~~dw~~~L~~~Gfd~~~P 190 (317)
..|++||||.=.-+.-+... . .++-+|++...+-..|+. +..++.. +.+++++..|+. +|.+.+ ...||
T Consensus 540 ~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N-~~~ng~~-~~~v~~i~~D~~--~~l~~~-~~~fD---- 610 (702)
T PRK11783 540 KDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERN-FALNGLS-GRQHRLIQADCL--AWLKEA-REQFD---- 610 (702)
T ss_pred CeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHH-HHHhCCC-ccceEEEEccHH--HHHHHc-CCCcC----
Confidence 58999999988766655322 2 244444444444333333 3433322 135777777764 455443 11233
Q ss_pred EEEEEcCCCCCC-----------HHHHHHHHHHHHhccCCCcEEEEeCchhhhhhhcCCCCcchHHHHHHHHhCCCeeee
Q 021091 191 SVWAIQGLPVMT-----------LASFEDVLLLVGSLAMNKCLFLGELPAWLAETEFGNKSTTEKWMDKLFMSNGFGVGM 259 (317)
Q Consensus 191 tl~i~EGv~YL~-----------~~~v~~Ll~~ia~ls~~gS~l~~d~~~~~~~~~~~~~~~~~~w~~~~l~~~Gw~~~~ 259 (317)
+|++-- +|+. ......++..+.++..||+.++++..... + .. ..+.+...||.++.
T Consensus 611 -lIilDP-P~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~------~---~~--~~~~~~~~g~~~~~ 677 (702)
T PRK11783 611 -LIFIDP-PTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRG------F---KM--DEEGLAKLGLKAEE 677 (702)
T ss_pred -EEEECC-CCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCcc------C---Ch--hHHHHHhCCCeEEE
Confidence 343321 1332 12356678888888888888877642100 0 00 13556788999865
Q ss_pred cC
Q 021091 260 VS 261 (317)
Q Consensus 260 ~~ 261 (317)
..
T Consensus 678 i~ 679 (702)
T PRK11783 678 IT 679 (702)
T ss_pred Ee
Confidence 43
No 76
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=33.81 E-value=2.4e+02 Score=25.54 Aligned_cols=96 Identities=9% Similarity=-0.059 Sum_probs=53.2
Q ss_pred CceEEEeCCCCCCcccccCCCCCcEEEEech-hhhHHHHHHHHhhcCCCCCCcceEEeecCCCchHHHHHHhcCCCCCCC
Q 021091 112 LKQVVLLTDGMDTRPYRLNWPTSTIIFDISP-ERIFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQALRAKGFNGNRP 190 (317)
Q Consensus 112 ~~QVV~LGAGLDTRa~RL~~~~~~~~fEVD~-P~v~~~K~~~L~~~~~~~p~~~~~v~vdld~~dw~~~L~~~Gfd~~~P 190 (317)
...|+-+|||--.-...+... +..++-+|. |++++.-++... ...++..|+..-. +....||
T Consensus 43 ~~~vLDiGcG~G~~~~~l~~~-~~~v~~~D~s~~~l~~a~~~~~--------~~~~~~~d~~~~~----~~~~~fD---- 105 (251)
T PRK10258 43 FTHVLDAGCGPGWMSRYWRER-GSQVTALDLSPPMLAQARQKDA--------ADHYLAGDIESLP----LATATFD---- 105 (251)
T ss_pred CCeEEEeeCCCCHHHHHHHHc-CCeEEEEECCHHHHHHHHhhCC--------CCCEEEcCcccCc----CCCCcEE----
Confidence 458999999976433333222 467888887 666654333211 2346666664211 1111132
Q ss_pred EEEEEcCCC-CCCHHHHHHHHHHHHhccCCCcEEEEeC
Q 021091 191 SVWAIQGLP-VMTLASFEDVLLLVGSLAMNKCLFLGEL 227 (317)
Q Consensus 191 tl~i~EGv~-YL~~~~v~~Ll~~ia~ls~~gS~l~~d~ 227 (317)
++++-..+ +.. +...+|+.+.+...||+.+++-.
T Consensus 106 -~V~s~~~l~~~~--d~~~~l~~~~~~Lk~gG~l~~~~ 140 (251)
T PRK10258 106 -LAWSNLAVQWCG--NLSTALRELYRVVRPGGVVAFTT 140 (251)
T ss_pred -EEEECchhhhcC--CHHHHHHHHHHHcCCCeEEEEEe
Confidence 33332222 332 35678888888888888877653
No 77
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=32.99 E-value=4.8e+02 Score=25.59 Aligned_cols=127 Identities=12% Similarity=0.033 Sum_probs=67.4
Q ss_pred ceEEEeCCCCCCccccc--CCCCCcEEEEech-hhhHHHHHHHHhhcCCCCCCcceEEeecCCCchHHHHHHhcCCCCCC
Q 021091 113 KQVVLLTDGMDTRPYRL--NWPTSTIIFDISP-ERIFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQALRAKGFNGNR 189 (317)
Q Consensus 113 ~QVV~LGAGLDTRa~RL--~~~~~~~~fEVD~-P~v~~~K~~~L~~~~~~~p~~~~~v~vdld~~dw~~~L~~~Gfd~~~ 189 (317)
..|+-+|||.=.-...+ ..+ +.+++=+|. |++++.-++.... .+++++..|+.. .++..+.
T Consensus 115 ~~VLDLGcGtG~~~l~La~~~~-~~~VtgVD~S~~mL~~A~~k~~~------~~i~~i~gD~e~---------lp~~~~s 178 (340)
T PLN02490 115 LKVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEPL------KECKIIEGDAED---------LPFPTDY 178 (340)
T ss_pred CEEEEEecCCcHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHhhhc------cCCeEEeccHHh---------CCCCCCc
Confidence 47999999986533333 122 346666776 5555543332211 245555555431 1222223
Q ss_pred CEEEEEcCC-CCCCHHHHHHHHHHHHhccCCCcEEEE-eC--c-hhhhhhhcC--CCCcchHHHHHHHHhCCCee
Q 021091 190 PSVWAIQGL-PVMTLASFEDVLLLVGSLAMNKCLFLG-EL--P-AWLAETEFG--NKSTTEKWMDKLFMSNGFGV 257 (317)
Q Consensus 190 Ptl~i~EGv-~YL~~~~v~~Ll~~ia~ls~~gS~l~~-d~--~-~~~~~~~~~--~~~~~~~w~~~~l~~~Gw~~ 257 (317)
--++++-++ .|+... +.+|+.+.+...||..+++ +. + .|....... ....+.....++|.+.||+.
T Consensus 179 FDvVIs~~~L~~~~d~--~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~ 251 (340)
T PLN02490 179 ADRYVSAGSIEYWPDP--QRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKD 251 (340)
T ss_pred eeEEEEcChhhhCCCH--HHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeE
Confidence 335666666 465533 4688899998888887654 32 2 122221100 11123344568899999984
No 78
>PHA03411 putative methyltransferase; Provisional
Probab=32.26 E-value=27 Score=33.49 Aligned_cols=31 Identities=26% Similarity=0.377 Sum_probs=25.1
Q ss_pred eEEEeCCCCCCcccccCCCC---CcEEEEechhh
Q 021091 114 QVVLLTDGMDTRPYRLNWPT---STIIFDISPER 144 (317)
Q Consensus 114 QVV~LGAGLDTRa~RL~~~~---~~~~fEVD~P~ 144 (317)
=+..-|||.||-.||=+|.+ -+.+++||+-+
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (279)
T PHA03411 207 LVTYAGCGIDTSIYRDEWHSTNVLTEVVEVRYYE 240 (279)
T ss_pred cEecCCCCcccceehhhccCCCccceEEEEEecc
Confidence 47778999999999999853 36789999853
No 79
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=32.22 E-value=94 Score=29.55 Aligned_cols=56 Identities=11% Similarity=-0.022 Sum_probs=41.1
Q ss_pred cceEEeecCCCchHHHHHHhcCCCCCCCEEEEEcCCC-CCCHHHHHHHHHHHHhccCCCcEEEEeC
Q 021091 163 SCLFLHVPLESSNIQQALRAKGFNGNRPSVWAIQGLP-VMTLASFEDVLLLVGSLAMNKCLFLGEL 227 (317)
Q Consensus 163 ~~~~v~vdld~~dw~~~L~~~Gfd~~~Ptl~i~EGv~-YL~~~~v~~Ll~~ia~ls~~gS~l~~d~ 227 (317)
.+.+...|+..+.| ...+|| ++.+-=|| ||+.+...++++.++....||+.+..-.
T Consensus 185 ~V~F~~~NLl~~~~----~~~~fD-----~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~ 241 (268)
T COG1352 185 MVRFRRHNLLDDSP----FLGKFD-----LIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGH 241 (268)
T ss_pred ccEEeecCCCCCcc----ccCCCC-----EEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEcc
Confidence 34555556555554 223455 78888884 9999999999999999988999877543
No 80
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=31.27 E-value=2.6e+02 Score=24.18 Aligned_cols=102 Identities=10% Similarity=0.103 Sum_probs=55.8
Q ss_pred CceEEEeCCCCCCccccc--CCCCCcEEEEechhhhHHHHHHHHhhcCCCCCCcceEEeecCCCchHHHHHHhcCCCCCC
Q 021091 112 LKQVVLLTDGMDTRPYRL--NWPTSTIIFDISPERIFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQALRAKGFNGNR 189 (317)
Q Consensus 112 ~~QVV~LGAGLDTRa~RL--~~~~~~~~fEVD~P~v~~~K~~~L~~~~~~~p~~~~~v~vdld~~dw~~~L~~~Gfd~~~ 189 (317)
..+|+.+|||-=.-..-+ ......+++=+|.-+.. .. + +..++..|+......+.+.+. +..+.
T Consensus 33 g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~--------~~----~-~i~~~~~d~~~~~~~~~l~~~-~~~~~ 98 (188)
T TIGR00438 33 GDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK--------PI----E-NVDFIRGDFTDEEVLNKIRER-VGDDK 98 (188)
T ss_pred CCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc--------cC----C-CceEEEeeCCChhHHHHHHHH-hCCCC
Confidence 358999999976532211 12223456666654322 11 1 466777777643333333322 22334
Q ss_pred CEEEEEcCCC-C-----CC----HHHHHHHHHHHHhccCCCcEEEEeC
Q 021091 190 PSVWAIQGLP-V-----MT----LASFEDVLLLVGSLAMNKCLFLGEL 227 (317)
Q Consensus 190 Ptl~i~EGv~-Y-----L~----~~~v~~Ll~~ia~ls~~gS~l~~d~ 227 (317)
.-++++.+.+ | +. .+....+|+.+.+...||+.+++..
T Consensus 99 ~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~ 146 (188)
T TIGR00438 99 VDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKV 146 (188)
T ss_pred ccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 5567765532 1 11 1234678888888888888887753
No 81
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=30.02 E-value=59 Score=29.27 Aligned_cols=38 Identities=5% Similarity=-0.135 Sum_probs=30.6
Q ss_pred CEEEEEcCC-CCCCHHHHHHHHHHHHhccCCCcEEEEeC
Q 021091 190 PSVWAIQGL-PVMTLASFEDVLLLVGSLAMNKCLFLGEL 227 (317)
Q Consensus 190 Ptl~i~EGv-~YL~~~~v~~Ll~~ia~ls~~gS~l~~d~ 227 (317)
=-++++--| .||+++..+.+++.+.+...||+.++.-.
T Consensus 137 fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 137 FDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred ccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 358899999 59999999999999999998998877654
No 82
>PHA03412 putative methyltransferase; Provisional
Probab=29.41 E-value=36 Score=31.96 Aligned_cols=32 Identities=16% Similarity=0.127 Sum_probs=25.8
Q ss_pred ceEEEeCCCCCCcccccCCCC---CcEEEEechhh
Q 021091 113 KQVVLLTDGMDTRPYRLNWPT---STIIFDISPER 144 (317)
Q Consensus 113 ~QVV~LGAGLDTRa~RL~~~~---~~~~fEVD~P~ 144 (317)
.-+..-|||.||-.||=+|.+ -+.+++||+-+
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (241)
T PHA03412 194 GLEMNPGCGIDTGYYLEDWKGVKPLCEVVCMEFNE 228 (241)
T ss_pred CeeecCCCCccceeehhhccCCCccceEEEEeecC
Confidence 358889999999999999853 35688999853
No 83
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=28.19 E-value=3.9e+02 Score=23.03 Aligned_cols=97 Identities=13% Similarity=0.129 Sum_probs=52.2
Q ss_pred CceEEEeCCCCCCccccc--CCCCCcEEEEech-hhhHHHHHHHHhhcCCCCCCcceEEeecCCCchHHHHHHhcCCCCC
Q 021091 112 LKQVVLLTDGMDTRPYRL--NWPTSTIIFDISP-ERIFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQALRAKGFNGN 188 (317)
Q Consensus 112 ~~QVV~LGAGLDTRa~RL--~~~~~~~~fEVD~-P~v~~~K~~~L~~~~~~~p~~~~~v~vdld~~dw~~~L~~~Gfd~~ 188 (317)
...|+-+|||.-.-...+ ..+....++=+|. |++++.-++.+. . ..+++++..|+.... +..+
T Consensus 40 ~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~-~----~~~i~~~~~d~~~~~---------~~~~ 105 (223)
T TIGR01934 40 GQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE-L----PLNIEFIQADAEALP---------FEDN 105 (223)
T ss_pred CCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc-c----CCCceEEecchhcCC---------CCCC
Confidence 458999999976654444 2332134555554 444444333333 1 235677777765211 1122
Q ss_pred CCEEEEEcCC-CCCCHHHHHHHHHHHHhccCCCcEEE
Q 021091 189 RPSVWAIQGL-PVMTLASFEDVLLLVGSLAMNKCLFL 224 (317)
Q Consensus 189 ~Ptl~i~EGv-~YL~~~~v~~Ll~~ia~ls~~gS~l~ 224 (317)
.--++++-.+ .++ .+...+++.+.....||..++
T Consensus 106 ~~D~i~~~~~~~~~--~~~~~~l~~~~~~L~~gG~l~ 140 (223)
T TIGR01934 106 SFDAVTIAFGLRNV--TDIQKALREMYRVLKPGGRLV 140 (223)
T ss_pred cEEEEEEeeeeCCc--ccHHHHHHHHHHHcCCCcEEE
Confidence 2334444333 233 235678888888877877654
No 84
>PF15076 DUF4543: Domain of unknown function (DUF4543)
Probab=26.50 E-value=28 Score=26.32 Aligned_cols=27 Identities=30% Similarity=0.502 Sum_probs=23.9
Q ss_pred cCchhhhHHHHHHHHHhhhhcCccCcc
Q 021091 289 RFSDDQMDTWRRELQRVEEEGDEEGFE 315 (317)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (317)
||++..|.-|--|+++.|--+.|-++|
T Consensus 30 GfpdepmrE~ml~l~~LeqraeEqflE 56 (75)
T PF15076_consen 30 GFPDEPMREYMLHLQALEQRAEEQFLE 56 (75)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999998877777765
No 85
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=25.89 E-value=4.7e+02 Score=23.16 Aligned_cols=101 Identities=11% Similarity=0.052 Sum_probs=51.3
Q ss_pred ceEEEeCCCCCCcccccCCCCCcEEEEechh-hhHHHHHHHHhhcCCCCCCcceEEeecCCCchHHHHHHhcCCCCCCCE
Q 021091 113 KQVVLLTDGMDTRPYRLNWPTSTIIFDISPE-RIFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQALRAKGFNGNRPS 191 (317)
Q Consensus 113 ~QVV~LGAGLDTRa~RL~~~~~~~~fEVD~P-~v~~~K~~~L~~~~~~~p~~~~~v~vdld~~dw~~~L~~~Gfd~~~Pt 191 (317)
..|+.+|||.-.-...+... +..+.-+|.. +.++.-++.+...+. ...++..++. ++... ....|| .
T Consensus 50 ~~vLdiG~G~G~~~~~l~~~-~~~v~~iD~s~~~~~~a~~~~~~~~~----~~~~~~~~~~--~~~~~-~~~~fD----~ 117 (233)
T PRK05134 50 KRVLDVGCGGGILSESMARL-GADVTGIDASEENIEVARLHALESGL----KIDYRQTTAE--ELAAE-HPGQFD----V 117 (233)
T ss_pred CeEEEeCCCCCHHHHHHHHc-CCeEEEEcCCHHHHHHHHHHHHHcCC----ceEEEecCHH--Hhhhh-cCCCcc----E
Confidence 47999999976655455322 3456666653 344433333333221 2334433332 22110 111232 4
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhccCCCcEEEEeC
Q 021091 192 VWAIQGLPVMTLASFEDVLLLVGSLAMNKCLFLGEL 227 (317)
Q Consensus 192 l~i~EGv~YL~~~~v~~Ll~~ia~ls~~gS~l~~d~ 227 (317)
+++...+.+.. +...+|+.+.+...||+.+++..
T Consensus 118 Ii~~~~l~~~~--~~~~~l~~~~~~L~~gG~l~v~~ 151 (233)
T PRK05134 118 VTCMEMLEHVP--DPASFVRACAKLVKPGGLVFFST 151 (233)
T ss_pred EEEhhHhhccC--CHHHHHHHHHHHcCCCcEEEEEe
Confidence 44443333443 23467888888888888877664
No 86
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=25.09 E-value=71 Score=30.62 Aligned_cols=38 Identities=11% Similarity=-0.010 Sum_probs=32.5
Q ss_pred CEEEEEcCC-CCCCHHHHHHHHHHHHhccCCCcEEEEeC
Q 021091 190 PSVWAIQGL-PVMTLASFEDVLLLVGSLAMNKCLFLGEL 227 (317)
Q Consensus 190 Ptl~i~EGv-~YL~~~~v~~Ll~~ia~ls~~gS~l~~d~ 227 (317)
-=+|++..| .|++++....+++.+.+...||+.++.-.
T Consensus 224 fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 224 FDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred cceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 347888888 69999999999999999999999877654
No 87
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=24.52 E-value=2.6e+02 Score=26.91 Aligned_cols=112 Identities=10% Similarity=0.092 Sum_probs=72.7
Q ss_pred HHHHHHHHHhccCCCceEEEeCCCCCCcccccCCCCCcEEEEechhh-hHHHHHHHHhhcCCCCCCcceEEeecCCCchH
Q 021091 98 IDDKLLRTVNHMDGLKQVVLLTDGMDTRPYRLNWPTSTIIFDISPER-IFKISAEKLEGVGAKIPRSCLFLHVPLESSNI 176 (317)
Q Consensus 98 iDd~l~~~i~~~~g~~QVV~LGAGLDTRa~RL~~~~~~~~fEVD~P~-v~~~K~~~L~~~~~~~p~~~~~v~vdld~~dw 176 (317)
+|..+.++ .-.+| .-|+-+|||-=...-+...--+++++=|++.+ ..+.-++.+.+.+-. .+.+.+..|.. +.
T Consensus 61 ~~~~~~kl-~L~~G-~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~--~~v~v~l~d~r--d~ 134 (283)
T COG2230 61 LDLILEKL-GLKPG-MTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLE--DNVEVRLQDYR--DF 134 (283)
T ss_pred HHHHHHhc-CCCCC-CEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCC--cccEEEecccc--cc
Confidence 55555544 22245 58999999988877777432369999999854 445555556665432 34555555543 11
Q ss_pred HHHHHhcCCCCCCCEEEEEcCC-CCCCHHHHHHHHHHHHhccCCCcEEEE
Q 021091 177 QQALRAKGFNGNRPSVWAIQGL-PVMTLASFEDVLLLVGSLAMNKCLFLG 225 (317)
Q Consensus 177 ~~~L~~~Gfd~~~Ptl~i~EGv-~YL~~~~v~~Ll~~ia~ls~~gS~l~~ 225 (317)
.+. || - +++=|. =|+..+.....|+.+.+...||+.++.
T Consensus 135 ~e~-----fD----r-IvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~ll 174 (283)
T COG2230 135 EEP-----FD----R-IVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLL 174 (283)
T ss_pred ccc-----cc----e-eeehhhHHHhCcccHHHHHHHHHhhcCCCceEEE
Confidence 111 55 2 445555 489999999999999999988887653
No 88
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=23.77 E-value=2.9e+02 Score=24.21 Aligned_cols=106 Identities=10% Similarity=0.028 Sum_probs=58.3
Q ss_pred CceEEEeCCCCCCccccc--CCCCCcEEEEech-hhhHHHHHHHHhhcCCCCCCcceEEeecCCCchHHHHHHhcCCCC-
Q 021091 112 LKQVVLLTDGMDTRPYRL--NWPTSTIIFDISP-ERIFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQALRAKGFNG- 187 (317)
Q Consensus 112 ~~QVV~LGAGLDTRa~RL--~~~~~~~~fEVD~-P~v~~~K~~~L~~~~~~~p~~~~~v~vdld~~dw~~~L~~~Gfd~- 187 (317)
...|+-+|||-=.-...+ ..| +..++-||. +++++.-++.+...+ . .+++++..|+. +....+ ++.
T Consensus 17 ~~~ilDiGcG~G~~~~~la~~~p-~~~v~gvD~~~~~l~~a~~~~~~~~--l-~ni~~i~~d~~--~~~~~~----~~~~ 86 (194)
T TIGR00091 17 APLHLEIGCGKGRFLIDMAKQNP-DKNFLGIEIHTPIVLAANNKANKLG--L-KNLHVLCGDAN--ELLDKF----FPDG 86 (194)
T ss_pred CceEEEeCCCccHHHHHHHHhCC-CCCEEEEEeeHHHHHHHHHHHHHhC--C-CCEEEEccCHH--HHHHhh----CCCC
Confidence 357999999987765555 244 456777776 445544334444433 1 26777777764 222222 111
Q ss_pred CCCEEEEEcCCCCCCHHH------HHHHHHHHHhccCCCcEEEEeC
Q 021091 188 NRPSVWAIQGLPVMTLAS------FEDVLLLVGSLAMNKCLFLGEL 227 (317)
Q Consensus 188 ~~Ptl~i~EGv~YL~~~~------v~~Ll~~ia~ls~~gS~l~~d~ 227 (317)
.--.+++-=..++..... ...+++.+.+...||+.+.+-.
T Consensus 87 ~~d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~t 132 (194)
T TIGR00091 87 SLSKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKT 132 (194)
T ss_pred ceeEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEe
Confidence 122333322223432211 2468888899888888876653
No 89
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=23.42 E-value=3.1e+02 Score=25.19 Aligned_cols=102 Identities=15% Similarity=0.166 Sum_probs=58.6
Q ss_pred ceEEEeCCCCCCcccccC--CCCCcEEEEech-hhhHHHHHHHHhhcCCCCCCcceEEeecCCCchHHHHHHhcCCCCCC
Q 021091 113 KQVVLLTDGMDTRPYRLN--WPTSTIIFDISP-ERIFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQALRAKGFNGNR 189 (317)
Q Consensus 113 ~QVV~LGAGLDTRa~RL~--~~~~~~~fEVD~-P~v~~~K~~~L~~~~~~~p~~~~~v~vdld~~dw~~~L~~~Gfd~~~ 189 (317)
..|+-+|||-=.-...+. .+++..++=+|+ |++++.-++.++..+. .+++++..|... +. +.++-||
T Consensus 49 ~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~---~~i~~v~~da~~--lp--~~d~sfD--- 118 (233)
T PF01209_consen 49 DRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGL---QNIEFVQGDAED--LP--FPDNSFD--- 118 (233)
T ss_dssp -EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT-----SEEEEE-BTTB------S-TT-EE---
T ss_pred CEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCC---CCeeEEEcCHHH--hc--CCCCcee---
Confidence 489999999876555552 223568999998 6787776666666532 278888888762 21 2223344
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhccCCCcEE-EEeC
Q 021091 190 PSVWAIQGLPVMTLASFEDVLLLVGSLAMNKCLF-LGEL 227 (317)
Q Consensus 190 Ptl~i~EGv~YL~~~~v~~Ll~~ia~ls~~gS~l-~~d~ 227 (317)
.+.+.=|+-.++ +..+.|+.+.+...||+.+ +.|+
T Consensus 119 -~v~~~fglrn~~--d~~~~l~E~~RVLkPGG~l~ile~ 154 (233)
T PF01209_consen 119 -AVTCSFGLRNFP--DRERALREMYRVLKPGGRLVILEF 154 (233)
T ss_dssp -EEEEES-GGG-S--SHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred -EEEHHhhHHhhC--CHHHHHHHHHHHcCCCeEEEEeec
Confidence 666666663332 2345677788877787764 4564
No 90
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=23.07 E-value=1.1e+02 Score=28.65 Aligned_cols=38 Identities=3% Similarity=-0.149 Sum_probs=31.4
Q ss_pred CEEEEEcCC-CCCCHHHHHHHHHHHHhccCCCcEEEEeC
Q 021091 190 PSVWAIQGL-PVMTLASFEDVLLLVGSLAMNKCLFLGEL 227 (317)
Q Consensus 190 Ptl~i~EGv-~YL~~~~v~~Ll~~ia~ls~~gS~l~~d~ 227 (317)
--++++-.| .|++.++..++++.+.+...||+.++.-.
T Consensus 204 fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 204 FDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred CCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 346777777 59999999999999999999999887653
No 91
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=23.04 E-value=1.8e+02 Score=29.03 Aligned_cols=52 Identities=12% Similarity=0.052 Sum_probs=42.3
Q ss_pred CchHHHHHHhcCCCCCCCEEEEEcCCC-CCCHHHHHHHHHHHHhccCCCcEEEEe
Q 021091 173 SSNIQQALRAKGFNGNRPSVWAIQGLP-VMTLASFEDVLLLVGSLAMNKCLFLGE 226 (317)
Q Consensus 173 ~~dw~~~L~~~Gfd~~~Ptl~i~EGv~-YL~~~~v~~Ll~~ia~ls~~gS~l~~d 226 (317)
.+++.+.|... .+..=+.++.--.| ||++++..++++.|...+.||+++++=
T Consensus 281 t~si~~~L~~~--~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~R 333 (380)
T PF11899_consen 281 TDSIEEVLRRL--PPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWR 333 (380)
T ss_pred eccHHHHHHhC--CCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEe
Confidence 35677777653 35566788887786 999999999999999999999999875
No 92
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=23.00 E-value=5.1e+02 Score=22.57 Aligned_cols=102 Identities=17% Similarity=0.179 Sum_probs=53.1
Q ss_pred ceEEEeCCCCCCccccc--CCCCCcEEEEech-hhhHHHHHHHHhhcCCCCCCcceEEeecCCCchHHHHHHhcCCCCCC
Q 021091 113 KQVVLLTDGMDTRPYRL--NWPTSTIIFDISP-ERIFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQALRAKGFNGNR 189 (317)
Q Consensus 113 ~QVV~LGAGLDTRa~RL--~~~~~~~~fEVD~-P~v~~~K~~~L~~~~~~~p~~~~~v~vdld~~dw~~~L~~~Gfd~~~ 189 (317)
..|+.+|||-=.-...+ ..+...+++-+|. |.+++.-++.+...+. ..+..++..|+.... +....||
T Consensus 53 ~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~--~~~~~~~~~d~~~~~----~~~~~~D--- 123 (239)
T PRK00216 53 DKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGL--SGNVEFVQGDAEALP----FPDNSFD--- 123 (239)
T ss_pred CeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhccccc--ccCeEEEecccccCC----CCCCCcc---
Confidence 58999999975433333 2332466777776 3444443343333211 124666666664211 1111122
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhccCCCcEEE-Ee
Q 021091 190 PSVWAIQGLPVMTLASFEDVLLLVGSLAMNKCLFL-GE 226 (317)
Q Consensus 190 Ptl~i~EGv~YL~~~~v~~Ll~~ia~ls~~gS~l~-~d 226 (317)
.+++.-++.++. +...+|+.+..+..+|+.++ .+
T Consensus 124 -~I~~~~~l~~~~--~~~~~l~~~~~~L~~gG~li~~~ 158 (239)
T PRK00216 124 -AVTIAFGLRNVP--DIDKALREMYRVLKPGGRLVILE 158 (239)
T ss_pred -EEEEecccccCC--CHHHHHHHHHHhccCCcEEEEEE
Confidence 444444433332 35677888888877877654 44
No 93
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=22.29 E-value=73 Score=31.67 Aligned_cols=112 Identities=12% Similarity=0.157 Sum_probs=68.5
Q ss_pred ceEEEeCCCCCCcccccCCCCCcEEE--EechhhhHHHHHHHHhhcCCCCCCcceEEee-cCC---------CchHHHHH
Q 021091 113 KQVVLLTDGMDTRPYRLNWPTSTIIF--DISPERIFKISAEKLEGVGAKIPRSCLFLHV-PLE---------SSNIQQAL 180 (317)
Q Consensus 113 ~QVV~LGAGLDTRa~RL~~~~~~~~f--EVD~P~v~~~K~~~L~~~~~~~p~~~~~v~v-dld---------~~dw~~~L 180 (317)
-|++.|++|.+=..|-+..|+++-++ |.+.+++++..+.+....+..| .+...+-. |+. ...+....
T Consensus 108 ~l~IalaaG~~lfG~~v~epGkvlyvslEl~re~~L~Rl~~v~a~mgLsP-advrn~dltd~~Gaa~~~d~l~pkl~rRf 186 (402)
T COG3598 108 YLCIALAAGKNLFGNKVKEPGKVLYVSLELYREDILERLEPVRARMGLSP-ADVRNMDLTDVSGAADESDVLSPKLYRRF 186 (402)
T ss_pred HHHHHHHhhHHHhcccccCCCeEEEEEeccChHHHHHHHHHHHHHcCCCh-HhhhheeccccccCCCccccccHHHHHHH
Confidence 37788999999999888888776655 7788999998888888877543 33332222 111 11122111
Q ss_pred HhcCCCCCCCEEEEEcCC--CC----CCHHHHHHHHHHHHhccC-CCcEEEEe
Q 021091 181 RAKGFNGNRPSVWAIQGL--PV----MTLASFEDVLLLVGSLAM-NKCLFLGE 226 (317)
Q Consensus 181 ~~~Gfd~~~Ptl~i~EGv--~Y----L~~~~v~~Ll~~ia~ls~-~gS~l~~d 226 (317)
..- ..-.+|.++|.--. .| ++..+++.+++....++- -+|.++|=
T Consensus 187 ek~-~~Q~rp~~vViDp~v~f~~G~s~s~vqv~~fi~~~rkla~~l~caIiy~ 238 (402)
T COG3598 187 EKI-LEQKRPDFVVIDPFVAFYEGKSISDVQVKEFIKKTRKLARNLECAIIYI 238 (402)
T ss_pred HHH-HHHhCCCeEEEcchhhhcCCccchhHHHHHHHHHHHHHHHhcCCeEEEE
Confidence 110 12347888877665 34 445677888877777642 35555553
No 94
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=21.85 E-value=6.3e+02 Score=23.25 Aligned_cols=104 Identities=18% Similarity=0.177 Sum_probs=62.6
Q ss_pred CCCceEEEeCC--CCCCcccccCCCCCcEEEEech-hhhHHHHHHHHhhcCCCCCCcceEEeecCCCchHHHHHHh---c
Q 021091 110 DGLKQVVLLTD--GMDTRPYRLNWPTSTIIFDISP-ERIFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQALRA---K 183 (317)
Q Consensus 110 ~g~~QVV~LGA--GLDTRa~RL~~~~~~~~fEVD~-P~v~~~K~~~L~~~~~~~p~~~~~v~vdld~~dw~~~L~~---~ 183 (317)
.|.+.|+.+|. |+.+-..=...|.+.+++-+|. |+..+.-++.+++.+... +...+.. .|+.+.|.+ .
T Consensus 58 ~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~--~i~~~~~----gdal~~l~~~~~~ 131 (219)
T COG4122 58 SGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDD--RIELLLG----GDALDVLSRLLDG 131 (219)
T ss_pred cCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEEec----CcHHHHHHhccCC
Confidence 36679999986 4555322224454557888887 667777788888876432 3333332 356666655 2
Q ss_pred CCCCCCCEEEEEcCCCCCCHHHHHHHHHHHHhccCCCcEEEEeCc
Q 021091 184 GFNGNRPSVWAIQGLPVMTLASFEDVLLLVGSLAMNKCLFLGELP 228 (317)
Q Consensus 184 Gfd~~~Ptl~i~EGv~YL~~~~v~~Ll~~ia~ls~~gS~l~~d~~ 228 (317)
.|| .+||==. ..+....|..+-.+..||+.++.|-.
T Consensus 132 ~fD----liFIDad-----K~~yp~~le~~~~lLr~GGliv~DNv 167 (219)
T COG4122 132 SFD----LVFIDAD-----KADYPEYLERALPLLRPGGLIVADNV 167 (219)
T ss_pred Ccc----EEEEeCC-----hhhCHHHHHHHHHHhCCCcEEEEeec
Confidence 233 3333222 23344556666666779999999953
No 95
>PRK14968 putative methyltransferase; Provisional
Probab=21.74 E-value=4.8e+02 Score=21.84 Aligned_cols=123 Identities=11% Similarity=0.040 Sum_probs=67.2
Q ss_pred ceEEEeCCCCCCcccccCCCCCcEEEEech-hhhHHHHHHHHhhcCCCCCCcceEEeecCCCchHHHHHHhcCCCCCCCE
Q 021091 113 KQVVLLTDGMDTRPYRLNWPTSTIIFDISP-ERIFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQALRAKGFNGNRPS 191 (317)
Q Consensus 113 ~QVV~LGAGLDTRa~RL~~~~~~~~fEVD~-P~v~~~K~~~L~~~~~~~p~~~~~v~vdld~~dw~~~L~~~Gfd~~~Pt 191 (317)
..|+.+|||--.-...+... +.+++=+|. |++++.-++.+...+.. .....++..|+. +.+.. ..-.
T Consensus 25 ~~vLd~G~G~G~~~~~l~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~-~~~~~~~~~d~~-----~~~~~-----~~~d 92 (188)
T PRK14968 25 DRVLEVGTGSGIVAIVAAKN-GKKVVGVDINPYAVECAKCNAKLNNIR-NNGVEVIRSDLF-----EPFRG-----DKFD 92 (188)
T ss_pred CEEEEEccccCHHHHHHHhh-cceEEEEECCHHHHHHHHHHHHHcCCC-CcceEEEecccc-----ccccc-----cCce
Confidence 47999999977765555322 345555565 55665544445443321 111555555542 11211 1234
Q ss_pred EEEEcCCCCCC---------------------HHHHHHHHHHHHhccCCCcEEEEeCchhhhhhhcCCCCcchHHHHHHH
Q 021091 192 VWAIQGLPVMT---------------------LASFEDVLLLVGSLAMNKCLFLGELPAWLAETEFGNKSTTEKWMDKLF 250 (317)
Q Consensus 192 l~i~EGv~YL~---------------------~~~v~~Ll~~ia~ls~~gS~l~~d~~~~~~~~~~~~~~~~~~w~~~~l 250 (317)
++++-. +|+. ......+++.+.+...||+.+++-.+... ....+.+++
T Consensus 93 ~vi~n~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~----------~~~~l~~~~ 161 (188)
T PRK14968 93 VILFNP-PYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLT----------GEDEVLEYL 161 (188)
T ss_pred EEEECC-CcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccC----------CHHHHHHHH
Confidence 444422 3433 33456678888888888887766543211 122355778
Q ss_pred HhCCCeee
Q 021091 251 MSNGFGVG 258 (317)
Q Consensus 251 ~~~Gw~~~ 258 (317)
.+.||++.
T Consensus 162 ~~~g~~~~ 169 (188)
T PRK14968 162 EKLGFEAE 169 (188)
T ss_pred HHCCCeee
Confidence 89999864
No 96
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=21.72 E-value=1.4e+02 Score=28.44 Aligned_cols=144 Identities=13% Similarity=0.134 Sum_probs=79.1
Q ss_pred CceEEEeCCCCCCcccccCCCCCcEEEEechhhhHHHHHHHHhhcCCCCCCcce-EEeecCCCchHHHHHHhcCCCCCCC
Q 021091 112 LKQVVLLTDGMDTRPYRLNWPTSTIIFDISPERIFKISAEKLEGVGAKIPRSCL-FLHVPLESSNIQQALRAKGFNGNRP 190 (317)
Q Consensus 112 ~~QVV~LGAGLDTRa~RL~~~~~~~~fEVD~P~v~~~K~~~L~~~~~~~p~~~~-~v~vdld~~dw~~~L~~~Gfd~~~P 190 (317)
-+.++-||||.=-..-+|..- --+.-=||..+.+-.|..- .+ -+. +...++ ..+.+. .++.++
T Consensus 126 F~~~lDLGCGTGL~G~~lR~~-a~~ltGvDiS~nMl~kA~e---Kg-----~YD~L~~Aea--~~Fl~~-----~~~er~ 189 (287)
T COG4976 126 FRRMLDLGCGTGLTGEALRDM-ADRLTGVDISENMLAKAHE---KG-----LYDTLYVAEA--VLFLED-----LTQERF 189 (287)
T ss_pred cceeeecccCcCcccHhHHHH-HhhccCCchhHHHHHHHHh---cc-----chHHHHHHHH--HHHhhh-----ccCCcc
Confidence 678999999976655555211 0122335655433222210 00 011 011111 111111 346788
Q ss_pred EEEEEcCC-CCCCHHHHHHHHHHHHhccCCCcEEEEeC---chhhhhhhcC--C-CCcchHHHHHHHHhCCCeeeecCHH
Q 021091 191 SVWAIQGL-PVMTLASFEDVLLLVGSLAMNKCLFLGEL---PAWLAETEFG--N-KSTTEKWMDKLFMSNGFGVGMVSYK 263 (317)
Q Consensus 191 tl~i~EGv-~YL~~~~v~~Ll~~ia~ls~~gS~l~~d~---~~~~~~~~~~--~-~~~~~~w~~~~l~~~Gw~~~~~~~~ 263 (317)
-+|++--| +||- +.+.++...+.+..||..++|.. +.|-. ...+ . -.-++..+...+.+.|+.+-.+...
T Consensus 190 DLi~AaDVl~YlG--~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~-f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~~~t 266 (287)
T COG4976 190 DLIVAADVLPYLG--ALEGLFAGAAGLLAPGGLFAFSVETLPDDGG-FVLGPSQRYAHSESYVRALLAASGLEVIAIEDT 266 (287)
T ss_pred cchhhhhHHHhhc--chhhHHHHHHHhcCCCceEEEEecccCCCCC-eecchhhhhccchHHHHHHHHhcCceEEEeecc
Confidence 89999999 6974 35668888899888999999875 22210 0000 1 1224666788999999997444333
Q ss_pred HHHHHcCCCCC
Q 021091 264 EVASSLGKELA 274 (317)
Q Consensus 264 ~~~~~~gr~~~ 274 (317)
.+-..-|.|+|
T Consensus 267 tiR~d~g~pv~ 277 (287)
T COG4976 267 TIRRDAGEPVP 277 (287)
T ss_pred cchhhcCCCCC
Confidence 44445566554
No 97
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=21.50 E-value=6.5e+02 Score=23.31 Aligned_cols=109 Identities=13% Similarity=0.158 Sum_probs=54.4
Q ss_pred CCCceEEEeCCCCCCccccc-CCC--CCcEEEEechhhhHHHHHHHHhhcCCCC-CCcceEEeecCCCchHHHHHHhcCC
Q 021091 110 DGLKQVVLLTDGMDTRPYRL-NWP--TSTIIFDISPERIFKISAEKLEGVGAKI-PRSCLFLHVPLESSNIQQALRAKGF 185 (317)
Q Consensus 110 ~g~~QVV~LGAGLDTRa~RL-~~~--~~~~~fEVD~P~v~~~K~~~L~~~~~~~-p~~~~~v~vdld~~dw~~~L~~~Gf 185 (317)
+..+-|+++|+|-=.-...+ ..+ ..++.+|+| |++++.-++.+....... ..+.+.+..|.. .+.... ...|
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid-~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~--~~l~~~-~~~y 146 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDID-EKVIELSKKFLPSLAGSYDDPRVDLQIDDGF--KFLADT-ENTF 146 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCC-HHHHHHHHHHhHhhcccccCCceEEEECchH--HHHHhC-CCCc
Confidence 34458999999975433222 222 358888998 456665555555432111 113444443321 222221 1124
Q ss_pred CCCCCEEEEEcCC-CCCCHHH--HHHHHHHHHhccCCCcEEEEeC
Q 021091 186 NGNRPSVWAIQGL-PVMTLAS--FEDVLLLVGSLAMNKCLFLGEL 227 (317)
Q Consensus 186 d~~~Ptl~i~EGv-~YL~~~~--v~~Ll~~ia~ls~~gS~l~~d~ 227 (317)
| +++.... .+-+... ....++.+.++..||+.+++..
T Consensus 147 D-----vIi~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~ 186 (270)
T TIGR00417 147 D-----VIIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQS 186 (270)
T ss_pred c-----EEEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcC
Confidence 3 3444332 2211111 3456667777777777777653
No 98
>PRK10329 glutaredoxin-like protein; Provisional
Probab=20.87 E-value=3.7e+02 Score=20.24 Aligned_cols=70 Identities=16% Similarity=0.141 Sum_probs=41.6
Q ss_pred cEEEEechhhhHHHHHHHHhhcCCCCCCcceEEeecCCC-chHHHHHHhcCCCCCCCEEEEEcCC-CCCCHHHHHHHHH
Q 021091 135 TIIFDISPERIFKISAEKLEGVGAKIPRSCLFLHVPLES-SNIQQALRAKGFNGNRPSVWAIQGL-PVMTLASFEDVLL 211 (317)
Q Consensus 135 ~~~fEVD~P~v~~~K~~~L~~~~~~~p~~~~~v~vdld~-~dw~~~L~~~Gfd~~~Ptl~i~EGv-~YL~~~~v~~Ll~ 211 (317)
+++|.-+.=.-...=++.|.+. ...|..+|++. .++.+.+...|. ...|++++-+.. ..+.++.+.++.-
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~~------gI~~~~idi~~~~~~~~~~~~~g~-~~vPvv~i~~~~~~Gf~~~~l~~~~~ 74 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMESR------GFDFEMINVDRVPEAAETLRAQGF-RQLPVVIAGDLSWSGFRPDMINRLHP 74 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHHC------CCceEEEECCCCHHHHHHHHHcCC-CCcCEEEECCEEEecCCHHHHHHHHH
Confidence 3445444322222234556665 34566667663 456677776665 488999886555 4788888877653
No 99
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=20.67 E-value=3.5e+02 Score=22.48 Aligned_cols=98 Identities=14% Similarity=0.182 Sum_probs=55.5
Q ss_pred hhhHHHHHHHHhhcCCCCCCcceEEeec-------CCCchHHHHHHhcCCCCCCCEEEEEcCC-CCCCHH-HHHHHHHHH
Q 021091 143 ERIFKISAEKLEGVGAKIPRSCLFLHVP-------LESSNIQQALRAKGFNGNRPSVWAIQGL-PVMTLA-SFEDVLLLV 213 (317)
Q Consensus 143 P~v~~~K~~~L~~~~~~~p~~~~~v~vd-------ld~~dw~~~L~~~Gfd~~~Ptl~i~EGv-~YL~~~-~v~~Ll~~i 213 (317)
|+..+..++++.......| .+|.+..+ +-..|..+.|..-. ..--+|..-|. +--+++ -...+|+.|
T Consensus 1 pel~~~~~~l~~~~p~~~~-g~hrl~~~~~~v~L~L~~gDa~~~l~~l~---~~~Da~ylDgFsP~~nPelWs~e~~~~l 76 (124)
T PF05430_consen 1 PELAELAEQLLAQWPPLLP-GFHRLEFDDGNVTLTLWFGDAREMLPQLD---ARFDAWYLDGFSPAKNPELWSEELFKKL 76 (124)
T ss_dssp GGGHHHHHHHHHC---S-S-EEEEEEETTTTEEEEEEES-HHHHHHHB----T-EEEEEE-SS-TTTSGGGSSHHHHHHH
T ss_pred CcchHHHHHHHHhCccccC-CcEEEEecCCCEEEEEEEcHHHHHHHhCc---ccCCEEEecCCCCcCCcccCCHHHHHHH
Confidence 5666777777776643333 34444332 22356666666532 45567777777 555554 356689999
Q ss_pred HhccCCCcEEEEeCchhhhhhhcCCCCcchHHHHHHHHhCCCeee
Q 021091 214 GSLAMNKCLFLGELPAWLAETEFGNKSTTEKWMDKLFMSNGFGVG 258 (317)
Q Consensus 214 a~ls~~gS~l~~d~~~~~~~~~~~~~~~~~~w~~~~l~~~Gw~~~ 258 (317)
+.++.+|+.++.=.. ...+..-|.++||.++
T Consensus 77 ~~~~~~~~~l~Tys~--------------a~~Vr~~L~~aGF~v~ 107 (124)
T PF05430_consen 77 ARLSKPGGTLATYSS--------------AGAVRRALQQAGFEVE 107 (124)
T ss_dssp HHHEEEEEEEEES----------------BHHHHHHHHHCTEEEE
T ss_pred HHHhCCCcEEEEeec--------------hHHHHHHHHHcCCEEE
Confidence 999988865543211 1225566899999985
No 100
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=20.45 E-value=3.9e+02 Score=27.28 Aligned_cols=99 Identities=7% Similarity=0.088 Sum_probs=55.9
Q ss_pred ceEEEeCCCCCCccccc-CC----CCCcEEEEech-hh-hHHHHHHHHhhcCCCCCCcceEEeecCCCchHHHHHHhcCC
Q 021091 113 KQVVLLTDGMDTRPYRL-NW----PTSTIIFDISP-ER-IFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQALRAKGF 185 (317)
Q Consensus 113 ~QVV~LGAGLDTRa~RL-~~----~~~~~~fEVD~-P~-v~~~K~~~L~~~~~~~p~~~~~v~vdld~~dw~~~L~~~Gf 185 (317)
..|+.+|||-=+...+- .- ...+++|=|.- |. ++..+ +++...+-. ++++.+..|+. +|..
T Consensus 188 ~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~-~~v~~n~w~--~~V~vi~~d~r--~v~l------- 255 (448)
T PF05185_consen 188 KVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQ-KRVNANGWG--DKVTVIHGDMR--EVEL------- 255 (448)
T ss_dssp -EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHH-HHHHHTTTT--TTEEEEES-TT--TSCH-------
T ss_pred eEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHH-HHHHhcCCC--CeEEEEeCccc--CCCC-------
Confidence 46999999988764332 11 12467777764 43 44443 333444322 46888888887 3321
Q ss_pred CCCCCEEEEEcCC-CCCCHHHHHHHHHHHHhccCCCcEEE
Q 021091 186 NGNRPSVWAIQGL-PVMTLASFEDVLLLVGSLAMNKCLFL 224 (317)
Q Consensus 186 d~~~Ptl~i~EGv-~YL~~~~v~~Ll~~ia~ls~~gS~l~ 224 (317)
|.+-=++|+|-+ .++..|-.-.+|....+...|++.++
T Consensus 256 -pekvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 256 -PEKVDIIVSELLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp -SS-EEEEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred -CCceeEEEEeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 336679999999 66655555567777777666776665
Done!