Query 021093
Match_columns 317
No_of_seqs 141 out of 952
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 12:38:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021093.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021093hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pfy_A OTU domain-containing p 100.0 4.6E-38 1.6E-42 280.8 7.0 159 139-314 25-183 (185)
2 3by4_A OTU1, ubiquitin thioest 100.0 7.6E-33 2.6E-37 251.1 10.0 127 168-315 15-142 (212)
3 3phx_A RNA-directed RNA polyme 100.0 3.7E-31 1.2E-35 235.9 13.5 133 173-316 31-163 (185)
4 3phu_A RNA-directed RNA polyme 100.0 1.7E-30 5.8E-35 237.4 15.2 133 173-316 31-163 (219)
5 1tff_A Ubiquitin thiolesterase 99.9 3.2E-23 1.1E-27 190.4 13.0 99 210-314 131-232 (234)
6 4dhi_B Ubiquitin thioesterase 99.9 2.5E-21 8.6E-26 182.8 13.8 104 210-315 169-276 (284)
7 4ddg_A Ubiquitin-conjugating e 99.8 6E-20 2E-24 179.6 13.9 98 210-312 299-399 (399)
8 2zfy_A Ubiquitin thioesterase 99.8 6.5E-20 2.2E-24 168.2 11.9 116 180-312 116-234 (234)
9 3dkb_A Tumor necrosis factor, 98.3 2.4E-06 8.2E-11 83.2 10.8 139 173-315 112-285 (390)
10 3zrh_A Ubiquitin thioesterase 98.2 6.9E-06 2.3E-10 81.2 11.3 139 173-316 189-352 (454)
11 2zfy_A Ubiquitin thioesterase 96.6 0.0033 1.1E-07 57.3 6.8 22 173-194 43-64 (234)
12 3quf_A Extracellular solute-bi 42.1 5.4 0.00018 36.6 0.0 10 49-58 10-19 (414)
13 1zxt_A ORF K6, VMIP-I, functio 38.2 11 0.00037 28.5 1.2 26 5-30 50-76 (76)
14 2nl9_A Fusion protein consisti 25.1 68 0.0023 26.8 4.1 56 209-264 38-105 (157)
15 4hw4_A Induced myeloid leukemi 23.6 83 0.0028 26.6 4.4 58 208-265 37-106 (157)
16 4a5u_A RNA replicase polyprote 21.9 94 0.0032 26.9 4.3 51 254-314 106-158 (160)
17 2w3l_A BCL2-XL, apoptosis regu 21.0 1.2E+02 0.0041 24.8 4.8 55 209-263 30-95 (144)
No 1
>3pfy_A OTU domain-containing protein 5; structural genomics, structural genomics consortium, SGC, PE C65 otubain, hydrolase; HET: MSE PG4; 1.70A {Homo sapiens} PDB: 3tmp_A* 3tmo_A*
Probab=100.00 E-value=4.6e-38 Score=280.81 Aligned_cols=159 Identities=19% Similarity=0.315 Sum_probs=110.8
Q ss_pred CCCcchhhHHHHhhcCCCCCCCchhHHHhhhcCCeEEEEeCCCCchhhHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHH
Q 021093 139 SNPETVTFYEEKISKIDGGGGGDDLNVKRCEIINERPFKVTADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQV 218 (317)
Q Consensus 139 ~~~~~~~~~~e~~~~~d~r~~~~~l~~~l~~~~gL~i~~IpgDGNCLFRAVA~qL~~~~G~~~~~~~~~q~~h~eLR~~V 218 (317)
+|+...+-.+|++..+|.+..++++++.+++++||++++||+|||||||||++||+ |. +..|.+||+.|
T Consensus 25 ~e~~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~gL~~~~I~~DGnCLFrAia~qL~---g~--------~~~h~~LR~~v 93 (185)
T 3pfy_A 25 DEYEAAAARIEAMDPATVEQQEHWFEKALRDKKGFIIKQMKEDGACLFRAVADQVY---GD--------QDMHEVVRKHC 93 (185)
T ss_dssp ------------CCHHHHHHHHHHHHHHHHHHHCCEEECCCCSTTHHHHHHHHHHH---SC--------GGGHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHCCcEEEeeCCCCChHHHHHHHHHh---CC--------chHHHHHHHHH
Confidence 35555555567777788888889999999889999999999999999999999999 32 24689999999
Q ss_pred HHHHhhChhhhhhhhcccHHHHHhhhcCCCcccChHHHHHHHHhcCccEEEEEeccCCCcceeEEecCCcccCCCCCeEE
Q 021093 219 VDELLKRRKETEWFIEGDFDTYVKEIQQPYVWGGEPELLMASHVLKKPIAVFMVVQSSGNLVNIANYGEEYQKDKESPIN 298 (317)
Q Consensus 219 vdyI~~n~deFe~Flee~feeY~~~Mrk~g~WGGeiEL~ALS~llkv~I~V~~~~~~~~~~~~I~~fGee~~~~~~~pI~ 298 (317)
++||++|+++|++|++++|++||++|+++++|||++||+|||++|+++|.||+.+.. + +.|. .|.+.. ..++|+
T Consensus 94 v~yi~~n~d~f~~Fv~~~~e~Y~~~m~~~~~WGg~iEL~AlS~~~~v~I~V~~~~~~--~-i~i~-~g~~~~--~~~~I~ 167 (185)
T 3pfy_A 94 MDYLMKNADYFSNYVTEDFTTYINRKRKNNCHGNHIEMQAMAEMYNRPVEVYQYSTE--P-INTF-HGIHQN--EDEPIR 167 (185)
T ss_dssp HHHHHHTHHHHTTCC-----------------CCHHHHHHHHHHHTSCEEEESSCSS--C-SEEE-CTTSCC--TTSCEE
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHhhCCCccchHHHHHHHHHhhCCcEEEEECCCC--C-eEEe-cCccCC--CCCEEE
Confidence 999999999999999999999999999999999999999999999999999997643 2 2221 243332 268999
Q ss_pred EEEcCCCCcceeeCCC
Q 021093 299 VLFHGYGHYDILETFS 314 (317)
Q Consensus 299 LlYhg~gHYDSLr~i~ 314 (317)
|+|++.+|||||++..
T Consensus 168 L~Y~~~~HYnSv~~p~ 183 (185)
T 3pfy_A 168 VSYHRNIHYNSVVNPN 183 (185)
T ss_dssp EEEETTTEEEEEECC-
T ss_pred EEECCCCCcccccCCC
Confidence 9999989999998763
No 2
>3by4_A OTU1, ubiquitin thioesterase OTU1; ubiquitin hydrolase, deubiquitinase, cell cycle, hydrolase; 1.55A {Saccharomyces cerevisiae} PDB: 3c0r_A
Probab=99.98 E-value=7.6e-33 Score=251.09 Aligned_cols=127 Identities=27% Similarity=0.362 Sum_probs=109.8
Q ss_pred hhcCCeEEEEeCCCCchhhHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHHHHHHhhChhhh-hhhhcccHHHHHhhhcC
Q 021093 168 CEIINERPFKVTADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDELLKRRKET-EWFIEGDFDTYVKEIQQ 246 (317)
Q Consensus 168 ~~~~gL~i~~IpgDGNCLFRAVA~qL~~~~G~~~~~~~~~q~~h~eLR~~VvdyI~~n~deF-e~Flee~feeY~~~Mrk 246 (317)
....+|.+++||+||||||||||+|| ... ..|.+||+.+++||++|+++| +.|++++|++||++|++
T Consensus 15 ~~~~~l~~~~i~~DGnCLFrAva~qL-~~~-----------~~~~~lR~~vv~yi~~n~d~f~e~~~~~~~e~Y~~~m~~ 82 (212)
T 3by4_A 15 SGENVLSVHPVLDDNSCLFHAIAYGI-FKQ-----------DSVRDLREMVSKEVLNNPVKFNDAILDKPNKDYAQWILK 82 (212)
T ss_dssp TCCSEEEEECCCCSTTHHHHHHHHHH-HSS-----------CCSHHHHHHHHHHHHHCTTTTCHHHHTSCHHHHHHHTTS
T ss_pred CCCCCeEEEEeCCCCchHHHHHHHHh-CCc-----------hHHHHHHHHHHHHHHHCHHHHhhhhcCCCHHHHHHHhcC
Confidence 34668999999999999999999999 421 358899999999999999999 46778899999999999
Q ss_pred CCcccChHHHHHHHHhcCccEEEEEeccCCCcceeEEecCCcccCCCCCeEEEEEcCCCCcceeeCCCC
Q 021093 247 PYVWGGEPELLMASHVLKKPIAVFMVVQSSGNLVNIANYGEEYQKDKESPINVLFHGYGHYDILETFSE 315 (317)
Q Consensus 247 ~g~WGGeiEL~ALS~llkv~I~V~~~~~~~~~~~~I~~fGee~~~~~~~pI~LlYhg~gHYDSLr~i~d 315 (317)
+++|||++||+|||++|+++|.||+.+.. .+..||+++. .++|+|+|++ +|||||+.-.|
T Consensus 83 ~~~WGg~iEL~Als~~~~~~I~V~~~~~~-----~~~~~~~~~~---~~~I~L~Y~g-~HYdsl~~~~d 142 (212)
T 3by4_A 83 MESWGGAIEIGIISDALAVAIYVVDIDAV-----KIEKFNEDKF---DNYILILFNG-IHYDSLTMNEF 142 (212)
T ss_dssp TTSCCCHHHHHHHHHHHTCEEEEEETTTT-----EEEEESTTTC---SEEEEEEECS-SCEEEEEETTT
T ss_pred CCEEccHHHHHHHHHHHCCCEEEEECCCC-----CeEEeCCCCC---CCeEEEEEcC-CcceEEecCCC
Confidence 99999999999999999999999997532 2568887752 5799999996 69999987443
No 3
>3phx_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Crimean-congo hemorrhagic fever virus} PDB: 3phw_A 3pt2_A 3pse_A 3prp_A 3prm_A
Probab=99.97 E-value=3.7e-31 Score=235.87 Aligned_cols=133 Identities=16% Similarity=0.271 Sum_probs=110.4
Q ss_pred eEEEEeCCCCchhhHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHHHHHHhhChhhhhhhhcccHHHHHhhhcCCCcccC
Q 021093 173 ERPFKVTADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDELLKRRKETEWFIEGDFDTYVKEIQQPYVWGG 252 (317)
Q Consensus 173 L~i~~IpgDGNCLFRAVA~qL~~~~G~~~~~~~~~q~~h~eLR~~VvdyI~~n~deFe~Flee~feeY~~~Mrk~g~WGG 252 (317)
+.+.+||+|||||||||++||+.+ .+.+. .+..|.+||+.+++||++|+++ .+++++|++||++|+++++|||
T Consensus 31 ~~v~rv~gDGnCLFrAva~qL~~~--~~~~~---~~~~~~~LR~~~~~yi~~~~~~--~~~~~~~~~Y~~~m~~~~~WGg 103 (185)
T 3phx_A 31 FEIVRQPGDGNCFYHSIAELTMPN--KTDHS---YHYIKRLTESAARKYYQEEPEA--RLVGLSLEDYLKRMLSDNEWGS 103 (185)
T ss_dssp EEEECCCSSTTHHHHHHHHHHSTT--CCTTT---HHHHHHHHHHHHHHHGGGCTTH--HHHCCCHHHHHHHHTSTTCCCB
T ss_pred eEEEccCCCCchHHHHHHHHHhCC--Cccch---hhhHHHHHHHHHHHHHHhChHh--hhcCCCHHHHHHHhhCCCccCc
Confidence 778899999999999999999842 11111 1345999999999999999998 4678899999999999999999
Q ss_pred hHHHHHHHHhcCccEEEEEeccCCCcceeEEecCCcccCCCCCeEEEEEcCCCCcceeeCCCCC
Q 021093 253 EPELLMASHVLKKPIAVFMVVQSSGNLVNIANYGEEYQKDKESPINVLFHGYGHYDILETFSEQ 316 (317)
Q Consensus 253 eiEL~ALS~llkv~I~V~~~~~~~~~~~~I~~fGee~~~~~~~pI~LlYhg~gHYDSLr~i~dk 316 (317)
++||+|||++|+++|.||+.+... .+..+.+||+++. .++|+|+|++.+|||+|+++.|.
T Consensus 104 ~iEL~Als~~~~v~I~V~~~d~~~-~~~~i~~f~~~~~---~~~I~L~Y~g~~HYdsl~~~~~~ 163 (185)
T 3phx_A 104 TLEASMLAKEMGITIIIWTVAASD-EVEAGIKFGDGDV---FTAVNLLHSGQTHFDALRILPQF 163 (185)
T ss_dssp HHHHHHHHHHHCCCEEEEEC--CC-BCCEEEEESSCCT---TTSEEEEEETTTEEEEEEECGGG
T ss_pred HHHHHHHHHHHCCcEEEEEecCCC-CceEEEEcCCCCC---CCEEEEEECCCcCchhceECCCC
Confidence 999999999999999999977543 2345678987753 58999999998899999998653
No 4
>3phu_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase; 2.20A {Crimean-congo hemorrhagic fever VIRUSIBAR10200}
Probab=99.97 E-value=1.7e-30 Score=237.39 Aligned_cols=133 Identities=16% Similarity=0.271 Sum_probs=112.2
Q ss_pred eEEEEeCCCCchhhHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHHHHHHhhChhhhhhhhcccHHHHHhhhcCCCcccC
Q 021093 173 ERPFKVTADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDELLKRRKETEWFIEGDFDTYVKEIQQPYVWGG 252 (317)
Q Consensus 173 L~i~~IpgDGNCLFRAVA~qL~~~~G~~~~~~~~~q~~h~eLR~~VvdyI~~n~deFe~Flee~feeY~~~Mrk~g~WGG 252 (317)
+.+++||||||||||||++||+.+ .+.+. .+..|.+||+.+++||++|+++ .+++++|++||++|+++++|||
T Consensus 31 ~~V~rvpgDGnCLFrAVs~qL~~~--~~~~~---~~~~h~~LR~~va~yi~~n~d~--~~~~~~feeY~~~m~~~g~WGG 103 (219)
T 3phu_A 31 FEIVRQPGDGNCFYHSIAELTMPN--KTDHS---YHYIKRLTESAARKYYQEEPEA--RLVGLSLEDYLKRMLSDNEWGS 103 (219)
T ss_dssp EEEECCCCSSCHHHHHHHHHHCTT--CCTTT---HHHHHHHHHHHHHHHGGGCHHH--HHHCCCHHHHHHHHHSTTCCCC
T ss_pred eEEEccCCCCchHHHHHHHHHhCC--Cccch---hhhHHHHHHHHHHHHHHhChhh--hhcCCCHHHHHHHhcCCCccCC
Confidence 778999999999999999999842 11111 1245999999999999999998 4678899999999999999999
Q ss_pred hHHHHHHHHhcCccEEEEEeccCCCcceeEEecCCcccCCCCCeEEEEEcCCCCcceeeCCCCC
Q 021093 253 EPELLMASHVLKKPIAVFMVVQSSGNLVNIANYGEEYQKDKESPINVLFHGYGHYDILETFSEQ 316 (317)
Q Consensus 253 eiEL~ALS~llkv~I~V~~~~~~~~~~~~I~~fGee~~~~~~~pI~LlYhg~gHYDSLr~i~dk 316 (317)
++||+|+|++|+++|+||+.+.+. ....+.+||+++. .++|+|+|++.+|||+|+++.|.
T Consensus 104 ~iEL~AlS~~~~v~I~V~~~d~~g-~~~~i~~fge~~~---~~~I~L~Y~g~~HYdSL~~~~d~ 163 (219)
T 3phu_A 104 TLEASMLAKEMGITIIIWTVAASD-EVEAGIKFGDGDV---FTAVNLLHSGQTHFDALRILPQF 163 (219)
T ss_dssp HHHHHHHHHHTTCCEEEEEESSSS-BEEEEEEESSCCT---TTSEEEEEETTTEEEEEEECTTT
T ss_pred HHHHHHHHHHhCCCEEEEEecCCC-CceeEEEecCCCC---CCeEEEEECCCcCchhheECCCC
Confidence 999999999999999999987542 2345678987754 68999999998899999998764
No 5
>1tff_A Ubiquitin thiolesterase protein OTUB2; hydrolase; 2.10A {Homo sapiens} SCOP: d.3.1.11
Probab=99.89 E-value=3.2e-23 Score=190.42 Aligned_cols=99 Identities=18% Similarity=0.236 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHHhhChhhhhhhhcc--cHHHHHh-hhcCCCcccChHHHHHHHHhcCccEEEEEeccCCCcceeEEecC
Q 021093 210 LADELRAQVVDELLKRRKETEWFIEG--DFDTYVK-EIQQPYVWGGEPELLMASHVLKKPIAVFMVVQSSGNLVNIANYG 286 (317)
Q Consensus 210 ~h~eLR~~VvdyI~~n~deFe~Flee--~feeY~~-~Mrk~g~WGGeiEL~ALS~llkv~I~V~~~~~~~~~~~~I~~fG 286 (317)
....||..++.||++|+++|++|+++ ++++||+ .|+.+++|||++||+|||+.|+++|.|++.++.. ..+....|.
T Consensus 131 iv~~lR~lta~~i~~~~d~f~pFi~~~~~~~~yC~~~ve~~~~~~~~iei~ALa~aL~v~I~V~~~d~~~-~~~~~~~~~ 209 (234)
T 1tff_A 131 IVQFLRLLTSAFIRNRADFFRHFIDEEMDIKDFCTHEVEPMATECDHIQITALSQALSIALQVEYVDEMD-TALNHHVFP 209 (234)
T ss_dssp HHHHHHHHHHHHHHHTHHHHGGGSCTTSCHHHHHHHHTSSTTCCCCHHHHHHHHHHHTCCEEEEECC--------CCCCC
T ss_pred HHHHHHHHHHHHHHHCHHHHhhhhcCCCCHHHHHHHHhhhhhcccccHHHHHHHHHhCCCEEEEEcCCCC-CccccccCC
Confidence 46779999999999999999999976 8999999 7999999999999999999999999999987653 112222443
Q ss_pred CcccCCCCCeEEEEEcCCCCcceeeCCC
Q 021093 287 EEYQKDKESPINVLFHGYGHYDILETFS 314 (317)
Q Consensus 287 ee~~~~~~~pI~LlYhg~gHYDSLr~i~ 314 (317)
++ ..+.|+|+|.+ ||||+|++.+
T Consensus 210 ~~----~~~~I~LlY~p-gHYdily~~~ 232 (234)
T 1tff_A 210 EA----ATPSVYLLYKT-SHYNILYAAD 232 (234)
T ss_dssp CC----SSCSEEEEEET-TEEEEEEECC
T ss_pred CC----CCCeEEEEECC-CCceecccCC
Confidence 32 25679999986 7999999875
No 6
>4dhi_B Ubiquitin thioesterase otubain-like; ubiquitin E2 enzyme fold, ubiquitination, hydrolase-ligase C; 1.80A {Caenorhabditis elegans} PDB: 4dhj_A 4dhz_A
Probab=99.86 E-value=2.5e-21 Score=182.79 Aligned_cols=104 Identities=13% Similarity=0.141 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHHhhChhhhhhhhcc--cHHHHHh-hhcCCCcccChHHHHHHHHhcCccEEEEEeccCCCcceeEEe-c
Q 021093 210 LADELRAQVVDELLKRRKETEWFIEG--DFDTYVK-EIQQPYVWGGEPELLMASHVLKKPIAVFMVVQSSGNLVNIAN-Y 285 (317)
Q Consensus 210 ~h~eLR~~VvdyI~~n~deFe~Flee--~feeY~~-~Mrk~g~WGGeiEL~ALS~llkv~I~V~~~~~~~~~~~~I~~-f 285 (317)
....||..++.||+.|+++|++|+++ ++++||+ .|+.+++|||++||+|||++|+++|.|+..++..+..+.... |
T Consensus 169 iv~~LRllts~yi~~~~d~f~pFi~~~~~v~~yC~~eVe~~~~e~d~leI~ALa~aL~v~I~V~ylDrs~g~~v~~h~~f 248 (284)
T 4dhi_B 169 ILMFFRLITSAFLKQNSEEYAPFIDEGMTVAQYCEQEIEPMWKDADHLAINSLIKAAGTRVRIEYMDRTAAPNGGWHYDI 248 (284)
T ss_dssp HHHHHHHHHHHHHHHTHHHHGGGSCTTCCHHHHHHHHTSSTTCCCCHHHHHHHHHHTTCCEEEEESSGGGCTTSSSEEEE
T ss_pred HHHHHHHHHHHHHHHCHHHHHhhcCCCCCHHHHHHHhceehhhcccHHHHHHHHHHhCCcEEEEEecCCCCCCCcccccC
Confidence 47789999999999999999999975 7999999 799999999999999999999999999998775433222234 6
Q ss_pred CCcccCCCCCeEEEEEcCCCCcceeeCCCC
Q 021093 286 GEEYQKDKESPINVLFHGYGHYDILETFSE 315 (317)
Q Consensus 286 Gee~~~~~~~pI~LlYhg~gHYDSLr~i~d 315 (317)
++........|.|+|.. ||||.|++..+
T Consensus 249 -p~~~~~~~p~I~LLYrp-gHYDILY~~~p 276 (284)
T 4dhi_B 249 -PSDDQQIAPEITLLYRP-GHYDVIYKKDS 276 (284)
T ss_dssp -SCCCSCCCCSEEEEEET-TEEEEEEECC-
T ss_pred -CCCCCCCCCEEEEeecC-CCccccccCCC
Confidence 33221224679999977 79999998765
No 7
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A
Probab=99.82 E-value=6e-20 Score=179.63 Aligned_cols=98 Identities=26% Similarity=0.336 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHHhhChhhhhhhhcc--cHHHHHh-hhcCCCcccChHHHHHHHHhcCccEEEEEeccCCCcceeEEecC
Q 021093 210 LADELRAQVVDELLKRRKETEWFIEG--DFDTYVK-EIQQPYVWGGEPELLMASHVLKKPIAVFMVVQSSGNLVNIANYG 286 (317)
Q Consensus 210 ~h~eLR~~VvdyI~~n~deFe~Flee--~feeY~~-~Mrk~g~WGGeiEL~ALS~llkv~I~V~~~~~~~~~~~~I~~fG 286 (317)
....||..++.||+.|+++|++|+++ ++++||+ .|+..++|||++||+|||+.|+++|.|+..++..+..+....|.
T Consensus 299 iv~~lRllts~~i~~~~d~f~pFi~~~~~v~~yc~~~ve~~~~e~d~l~I~ALa~al~v~I~V~yld~~~~~~v~~~~~~ 378 (399)
T 4ddg_A 299 LVVYLRLLTSGYLQRESKFFEHFIEGGRTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRGEGGTTNPHIFP 378 (399)
T ss_dssp HHHHHHHHHHHHHHHTHHHHGGGSSSSCCHHHHHHHHTSSTTCCBCHHHHHHHHHHHTCCCEEEECSCCSSSCCCEEETT
T ss_pred HHHHHHHHHHHHHHHCHHHHhcccCCCCCHHHHHHHhceeHHhhCcHHHHHHHHHHcCCcEEEEEcCCCCCCccceeeCC
Confidence 56789999999999999999999986 7999999 89999999999999999999999999998776433333334564
Q ss_pred CcccCCCCCeEEEEEcCCCCcceeeC
Q 021093 287 EEYQKDKESPINVLFHGYGHYDILET 312 (317)
Q Consensus 287 ee~~~~~~~pI~LlYhg~gHYDSLr~ 312 (317)
++. ...|+|+|.. ||||.|++
T Consensus 379 ~~~----~~~I~LLYrP-gHYDiLY~ 399 (399)
T 4ddg_A 379 EGS----EPKVYLLYRP-GHYDILYK 399 (399)
T ss_dssp TTC----CCCCEEEEET-BEEEEEEC
T ss_pred CCC----CCEEEEEEcC-CccccCCC
Confidence 322 5679999955 89999985
No 8
>2zfy_A Ubiquitin thioesterase OTUB1; otubain, structural genomics, structural genomics consortium, SGC, alternative splicing, hydrolase, immune response; 1.69A {Homo sapiens} PDB: 4ddg_B 4ddi_A
Probab=99.81 E-value=6.5e-20 Score=168.22 Aligned_cols=116 Identities=22% Similarity=0.279 Sum_probs=97.9
Q ss_pred CCCchhhHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHHHHHHhhChhhhhhhhcc--cHHHHHh-hhcCCCcccChHHH
Q 021093 180 ADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDELLKRRKETEWFIEG--DFDTYVK-EIQQPYVWGGEPEL 256 (317)
Q Consensus 180 gDGNCLFRAVA~qL~~~~G~~~~~~~~~q~~h~eLR~~VvdyI~~n~deFe~Flee--~feeY~~-~Mrk~g~WGGeiEL 256 (317)
.||+||++++.+|... ......||..+++||++|+++|++|+++ ++++||+ .++.+++|||++||
T Consensus 116 ~~~~~L~~~fndq~~s------------~~~v~~lR~lta~yi~~~~d~f~pFi~~~~~~e~yc~~~ve~~~~~~~~i~i 183 (234)
T 2zfy_A 116 TSVADLLASFNDQSTS------------DYLVVYLRLLTSGYLQRESKFFEHFIEGGRTVKEFCQQEVEPMCKESDHIHI 183 (234)
T ss_dssp CCHHHHHHHHTSHHHH------------HHHHHHHHHHHHHHHHHTHHHHGGGCCSSCCHHHHHHHHTSSTTCCCCHHHH
T ss_pred CCHHHHHHHHHhhccc------------hHHHHHHHHHHHHHHHHCHHHHhcccCCCCCHHHHHHHHhhhHhhcCCHHHH
Confidence 3999999999999762 2468999999999999999999999976 8999997 69999999999999
Q ss_pred HHHHHhcCccEEEEEeccCCCcceeEEecCCcccCCCCCeEEEEEcCCCCcceeeC
Q 021093 257 LMASHVLKKPIAVFMVVQSSGNLVNIANYGEEYQKDKESPINVLFHGYGHYDILET 312 (317)
Q Consensus 257 ~ALS~llkv~I~V~~~~~~~~~~~~I~~fGee~~~~~~~pI~LlYhg~gHYDSLr~ 312 (317)
+|||++|+++|.|++.++..++.+....|+++ ..+.|+|+|+. ||||+|++
T Consensus 184 ~ALa~al~v~I~V~~~d~~~~~~v~~~~f~~~----~~p~I~LlY~p-gHYdiLy~ 234 (234)
T 2zfy_A 184 IALAQALSVSIQVEYMDRGEGGTTNPHIFPEG----SEPKVYLLYRP-GHYDILYK 234 (234)
T ss_dssp HHHHHHHTCCEEEEECC-CCSSCCEEEEESTT----CCCSEEEEEET-TEEEEEEC
T ss_pred HHHHHHhCCCEEEEEcCCCCCCcccceeCCCC----CCCeEEEEECC-CCcccCCC
Confidence 99999999999999987664333444566543 25689999986 79999985
No 9
>3dkb_A Tumor necrosis factor, alpha-induced protein 3; OTU domain, DUB domain, apoptosis, cytoplasm, DNA-binding, hydrolase, metal-binding, nucleus; 2.50A {Homo sapiens} PDB: 2vfj_A
Probab=98.32 E-value=2.4e-06 Score=83.15 Aligned_cols=139 Identities=22% Similarity=0.315 Sum_probs=77.1
Q ss_pred eEEEEeCCCCchhhHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHHHHHHhhChhh----hhhhh-----------cccH
Q 021093 173 ERPFKVTADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDELLKRRKE----TEWFI-----------EGDF 237 (317)
Q Consensus 173 L~i~~IpgDGNCLFRAVA~qL~~~~G~~~~~~~~~q~~h~eLR~~VvdyI~~n~de----Fe~Fl-----------ee~f 237 (317)
|......||||||.+|++..++ |..=.+-.+++..+..||......++.++.. +..|. +.+|
T Consensus 112 L~pL~t~GDGnCLLHAvSqamW---Gv~DrdlvLRkaL~~~L~~~~~~~fr~RW~~e~~~~q~~~~~gL~y~e~ew~~EW 188 (390)
T 3dkb_A 112 LVALKTNGDGNCLMHATSQYMW---GVQDTDLVLRKALFSTLKETDTRNFKFRWQLESLKSQEFVETGLCYDTRNWNDEW 188 (390)
T ss_dssp EEEBCCCCSSCHHHHHHHHHHH---SSCSTTCHHHHHHHHHHHHSCCHHHHHHHHHHHHCCCSSCC----CCSSCSSHHH
T ss_pred eEEEEecCCCchHHHHHhHHhc---CCCCHhHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhhhHhhcccccHHHHHHHH
Confidence 4455568999999999999999 4321122223444444444322222222221 11222 1246
Q ss_pred HHHHhhhcCCC------c-c--cChHHHHHHHHhcCccEEEEEecc--C--CCcceeEEecCCcc-------cCCCCCeE
Q 021093 238 DTYVKEIQQPY------V-W--GGEPELLMASHVLKKPIAVFMVVQ--S--SGNLVNIANYGEEY-------QKDKESPI 297 (317)
Q Consensus 238 eeY~~~Mrk~g------~-W--GGeiEL~ALS~llkv~I~V~~~~~--~--~~~~~~I~~fGee~-------~~~~~~pI 297 (317)
++-++.-..+. . + =-++-+.+||+++++||+||.+.- . .+..+.-+.|+.-| ......||
T Consensus 189 ~~Iv~~Asp~~~~~~~~~~y~sLEeiHIFvLAhVLRRPIIV~~d~~lr~~~~Ge~~~Pi~f~GIYLPLlwpp~~C~rsPI 268 (390)
T 3dkb_A 189 DNLIKMASTDTPMARSGLQYNSLEEIHIFVLCNILRRPIIVISDKMLRSLESGSNFAPLKVGGIYLPLHWPAQECYRYPI 268 (390)
T ss_dssp HHHHHHTSSCCCSSSSSCSSCCCCHHHHHHHHHHTTSCEEEEECCCCTTCCCC----CCCCCEEECCTTSCTTSSCSSCE
T ss_pred HHHHHHhCCCCCCCCCcchhhhHHHHHHHHHHHHhcCCEEEEechhhccccCCCccCcCccCceecCCcCCHHHccCCce
Confidence 55444333221 1 1 237789999999999999996431 1 11111112333222 11236899
Q ss_pred EEEEcCCCCcceeeCCCC
Q 021093 298 NVLFHGYGHYDILETFSE 315 (317)
Q Consensus 298 ~LlYhg~gHYDSLr~i~d 315 (317)
.|.|.. |||.+|..+++
T Consensus 269 ~LgY~s-~HFsaLV~me~ 285 (390)
T 3dkb_A 269 VLGYDS-HHFVPLVTLKD 285 (390)
T ss_dssp EEEECS-SCEEEEEEBCS
T ss_pred EEEecc-Cceeeeeeccc
Confidence 999988 79999999875
No 10
>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}
Probab=98.21 E-value=6.9e-06 Score=81.19 Aligned_cols=139 Identities=22% Similarity=0.316 Sum_probs=85.4
Q ss_pred eEEEEeCCCCchhhHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHHHHHHhhChhhhhh---------hh--c----ccH
Q 021093 173 ERPFKVTADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDELLKRRKETEW---------FI--E----GDF 237 (317)
Q Consensus 173 L~i~~IpgDGNCLFRAVA~qL~~~~G~~~~~~~~~q~~h~eLR~~VvdyI~~n~deFe~---------Fl--e----e~f 237 (317)
|......||||||-+|++..++ |..=.+-.+++..+..|+..-. -+..++..+|. |. + .+|
T Consensus 189 L~pL~t~GDGNCLLHAvSqamW---GV~DrdlvLRkaL~~~L~~~~~-~f~~RW~~~e~~q~q~~gL~y~lde~ewq~EW 264 (454)
T 3zrh_A 189 LYALWNRTAGDCLLDSVLQATW---GIYDKDSVLRKALHDSLHDCSH-WFYTRWKDWESWYSQSFGLHFSLREEQWQEDW 264 (454)
T ss_dssp EEEBCCCCSSCHHHHHHHHTTT---SSCCGGGHHHHHHHHHHHHTHH-HHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHH
T ss_pred eeEeeecCCCccHHHHHHHHhh---cccCCcHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHHhhcCCcccccHHHHHHHH
Confidence 4455568999999999999999 5432333344455555554222 23344433222 22 2 246
Q ss_pred HHHHhhhcCCCcccChHHHHHHHHhcCccEEEEEeccCC---CcceeEEecCCcc-------cCCCCCeEEEEEcCCCCc
Q 021093 238 DTYVKEIQQPYVWGGEPELLMASHVLKKPIAVFMVVQSS---GNLVNIANYGEEY-------QKDKESPINVLFHGYGHY 307 (317)
Q Consensus 238 eeY~~~Mrk~g~WGGeiEL~ALS~llkv~I~V~~~~~~~---~~~~~I~~fGee~-------~~~~~~pI~LlYhg~gHY 307 (317)
+.-++.-..+++==-++-+.+||+++++||+||...... +..+.-+.||.-| ......||.|.|.. +||
T Consensus 265 ~~iv~~As~Pg~sLEeiHIFvLAhVLRRPIIV~~d~~lrs~~Ge~l~pi~f~GIYLPLlwpp~~C~rsPIvLgY~~-gHF 343 (454)
T 3zrh_A 265 AFILSLASQPGASLEQTHIFVLAHILRRPIIVYGVKYYKSFRGETLGYTRFQGVYLPLLWEQSFCWKSPIALGYTR-GHF 343 (454)
T ss_dssp HHHHHHTTSTTCCCCHHHHHHHHHHTTSCEEEEECSSCC-----CCCCCCCCEEECCTTSCGGGSCSCCEEEEEET-TEE
T ss_pred HHHHHHhcCCcchHHHHHHHHHHHHhcCCeEEeccccccccCCCcCCCcccceeeccCcCCHHHhcCCceEEEecc-cce
Confidence 665665666776666788999999999999999864211 1001011233211 11236899999987 699
Q ss_pred ceeeCCCCC
Q 021093 308 DILETFSEQ 316 (317)
Q Consensus 308 DSLr~i~dk 316 (317)
.+|..++++
T Consensus 344 saLV~~~~~ 352 (454)
T 3zrh_A 344 SALVAMEND 352 (454)
T ss_dssp EEEEEBCCC
T ss_pred eeeeecccc
Confidence 999998763
No 11
>2zfy_A Ubiquitin thioesterase OTUB1; otubain, structural genomics, structural genomics consortium, SGC, alternative splicing, hydrolase, immune response; 1.69A {Homo sapiens} PDB: 4ddg_B 4ddi_A
Probab=96.63 E-value=0.0033 Score=57.33 Aligned_cols=22 Identities=27% Similarity=0.496 Sum_probs=19.6
Q ss_pred eEEEEeCCCCchhhHHHHHHHH
Q 021093 173 ERPFKVTADGRCLFRAIAHGAC 194 (317)
Q Consensus 173 L~i~~IpgDGNCLFRAVA~qL~ 194 (317)
-..+.|.|||||+|||++.++.
T Consensus 43 ~~~R~vRgDGNCFyRaf~f~yl 64 (234)
T 2zfy_A 43 SYIRKTRPDGNCFYRAFGFSHL 64 (234)
T ss_dssp CEEECBCCSSCHHHHHHHHHHH
T ss_pred cceeeccCCccHHHHHHHHHHH
Confidence 3678999999999999998886
No 12
>3quf_A Extracellular solute-binding protein, family 1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.70A {Bifidobacterium longum subsp}
Probab=42.09 E-value=5.4 Score=36.65 Aligned_cols=10 Identities=20% Similarity=-0.174 Sum_probs=0.0
Q ss_pred cccccccccC
Q 021093 49 HSTACRLGVG 58 (317)
Q Consensus 49 ~~~~~~~~~~ 58 (317)
||+-|.+..+
T Consensus 10 ~~~~~~~l~~ 19 (414)
T 3quf_A 10 HSSGRENLYF 19 (414)
T ss_dssp ----------
T ss_pred ccccchhhhh
Confidence 5555554443
No 13
>1zxt_A ORF K6, VMIP-I, functional macrophage inflammatory protein 1-ALPH; chemokine fold, greek KEY motif, signaling protein; 1.70A {Human herpesvirus 8}
Probab=38.16 E-value=11 Score=28.45 Aligned_cols=26 Identities=23% Similarity=0.517 Sum_probs=16.8
Q ss_pred cccccC-cchhhhhhhhhccccccccc
Q 021093 5 LCARHK-PWILNSISLLAHGSFAAHHQ 30 (317)
Q Consensus 5 ~~~~~~-~~~~~~~~~~~~~~~~~~~~ 30 (317)
+||-|+ ||+-..+..+..-..|||||
T Consensus 50 vCadP~~~WVq~~ik~l~~~~~~~~~~ 76 (76)
T 1zxt_A 50 ICADPSKNWVRQLMQRLPAIAHHHHHH 76 (76)
T ss_dssp EEECTTSHHHHHHHHTSCBCCCC----
T ss_pred EeCCCChHHHHHHHHHHHhhhhcccCC
Confidence 799554 69999998776666666654
No 14
>2nl9_A Fusion protein consisting of induced myeloid LEUK differentiation protein MCL-1 homolog...; apoptosis, MCL-1, BIM; HET: MSE; 1.55A {Rattus norvegicus} PDB: 2nla_A 3d7v_A 3io9_A 3kj0_A 2pqk_A 3kj1_A 3kj2_A 3kz0_A 3mk8_A 1wsx_A 2jm6_B 2roc_A 2rod_A 2kbw_A 3mk8_B
Probab=25.08 E-value=68 Score=26.76 Aligned_cols=56 Identities=9% Similarity=0.077 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHhhChhhhhhhhc-------c---cHHHHHhhhcCCC--cccChHHHHHHHHhcC
Q 021093 209 ELADELRAQVVDELLKRRKETEWFIE-------G---DFDTYVKEIQQPY--VWGGEPELLMASHVLK 264 (317)
Q Consensus 209 ~~h~eLR~~VvdyI~~n~deFe~Fle-------e---~feeY~~~Mrk~g--~WGGeiEL~ALS~llk 264 (317)
+.+..||+.+.+..++++..|+.++. . .|.+=+++|-++| .||==+-|.+++-.+-
T Consensus 38 ~~~~~Lr~i~dele~~~~~~f~~~~~~l~i~~~~~~~~f~~Va~elF~dGi~nWGRIValf~F~~~la 105 (157)
T 2nl9_A 38 RALETLRRVGDGVQRNHETAFQGMLRKLDIKNEDDVKSLSRVMIHVFSDGVTNWGRIVTLISFGAFVA 105 (157)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHCCCSTTCCHHHHHHHHHHGGGSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHH
Confidence 56888999999999999999988763 2 2555567777888 5999999999987653
No 15
>4hw4_A Induced myeloid leukemia cell differentiation Pro 1; anti-apoptotic protein, BH3 peptides, apoptosis; 1.53A {Homo sapiens} PDB: 3kj0_A 2pqk_A 3kj1_A 3kj2_A 3kz0_A 3mk8_A 2kbw_A 4hw3_A* 4hw2_A* 3d7v_A 3io9_A 2nl9_A* 2nla_A 4g35_A* 1wsx_A 2jm6_B 2roc_A 2rod_A 3mk8_B
Probab=23.57 E-value=83 Score=26.58 Aligned_cols=58 Identities=12% Similarity=0.117 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHhhChhhhhhhhcc----------cHHHHHhhhcCCC--cccChHHHHHHHHhcCc
Q 021093 208 RELADELRAQVVDELLKRRKETEWFIEG----------DFDTYVKEIQQPY--VWGGEPELLMASHVLKK 265 (317)
Q Consensus 208 q~~h~eLR~~VvdyI~~n~deFe~Flee----------~feeY~~~Mrk~g--~WGGeiEL~ALS~llkv 265 (317)
.+.+..||..+.+..++++..|+.++.. .|.+=+++|-++| .||-=+-|.+++-.+-+
T Consensus 37 ~~~~~~Lr~vgdele~~~~~~f~~m~~~L~it~~~a~~~F~~Va~elF~dGi~NWGRIVaLfaFgg~la~ 106 (157)
T 4hw4_A 37 RKALETLRRVGDGVQRNHETAFQGMLRKLDIKNEDDVKSLSRVMIHVFSDGVTNWGRIVTLISFGAFVAK 106 (157)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHHCCCSHHHHHHHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHH
Confidence 4678899999999999999999887631 2555556777777 79999999988766543
No 16
>4a5u_A RNA replicase polyprotein; transferase-RNA binding protein complex, cysteine proteinase; 2.00A {Turnip yellow mosaic virus}
Probab=21.89 E-value=94 Score=26.93 Aligned_cols=51 Identities=12% Similarity=0.100 Sum_probs=38.3
Q ss_pred HHHHHHHHhcCccEEEEEeccCCCcceeEEecCCcccCCCCCeEEEEEcCC--CCcceeeCCC
Q 021093 254 PELLMASHVLKKPIAVFMVVQSSGNLVNIANYGEEYQKDKESPINVLFHGY--GHYDILETFS 314 (317)
Q Consensus 254 iEL~ALS~llkv~I~V~~~~~~~~~~~~I~~fGee~~~~~~~pI~LlYhg~--gHYDSLr~i~ 314 (317)
-.+.|||..|+...+|..... +.+||-... ...+.|.|... +||....++.
T Consensus 106 DhltaLa~~~~~~c~~hs~~~-------~~~~Gi~~a---s~~~~I~ht~G~P~HFs~~~~l~ 158 (160)
T 4a5u_A 106 EHLTALAHLYNFQATVYSDRG-------PILFGPSDT---IKRIDITHTTGPPSHFSPGKRLL 158 (160)
T ss_dssp HHHHHHHHHHTEEEEEEETTE-------EEEESCSSC---SEEEEEEEECSSSCEEEESCCCC
T ss_pred HHHHHHHHHHheEEEEEcCCc-------eEEeecCCC---ceEEEEEeCCCCCCCccCCcccc
Confidence 357899999999999998763 368887654 46777887753 6998776653
No 17
>2w3l_A BCL2-XL, apoptosis regulator BCL-2; HET: DRO; 2.10A {Homo sapiens} PDB: 2o2f_A*
Probab=20.98 E-value=1.2e+02 Score=24.81 Aligned_cols=55 Identities=20% Similarity=0.175 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHhhChhhhhhhhc------c----cHHHHHhhhcCCC-cccChHHHHHHHHhc
Q 021093 209 ELADELRAQVVDELLKRRKETEWFIE------G----DFDTYVKEIQQPY-VWGGEPELLMASHVL 263 (317)
Q Consensus 209 ~~h~eLR~~VvdyI~~n~deFe~Fle------e----~feeY~~~Mrk~g-~WGGeiEL~ALS~ll 263 (317)
+.+..||....+..++++..|..++. + .|.+=+++|-++| .||=-+-|.+++-.+
T Consensus 30 ~~~~~Lr~~gdele~~~~~~f~~~~~~l~i~~~~~~~~f~~Va~elF~dGinWGRIValf~F~g~l 95 (144)
T 2w3l_A 30 VVHKTLREAGDDFSRRYRRDFAEMSSGLHLTPFTARGRFATVVEELFRDGVNWGRIVAFFEFGGVM 95 (144)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHTTCCCCTTTHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHcCCCCccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 46788998888888888888877663 1 2444445555554 899999999888766
Done!