BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021094
(317 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8VXZ0|NUD20_ARATH Nudix hydrolase 20, chloroplastic OS=Arabidopsis thaliana GN=NUDT20
PE=2 SV=1
Length = 374
Score = 284 bits (727), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 149/302 (49%), Positives = 195/302 (64%), Gaps = 21/302 (6%)
Query: 1 MACNFHHLTQTIRLSFPPLHNFKVSDAFTNKSLITTFPVRFSVHSSAKLTTSIRSLRVDT 60
MA F L T+ S H A T + L P+ SS+ + +R R +
Sbjct: 1 MASGFCSLALTVTTSLFSSH------AITRRVL----PI-LRWRSSSMSLSPLRHSRALS 49
Query: 61 ASISYRSSCTFTWDDVFRVSQPEYSPDDSSDLRGYFEKIKICNRGSEMQSEFFPFIIEDQ 120
A+ + S +FTWDDV + EY +SSDL G+FEKI CNRGSE EF PF+IE+Q
Sbjct: 50 AATTVPISSSFTWDDVIETGRAEY---NSSDLTGFFEKINRCNRGSEKLGEFIPFVIEEQ 106
Query: 121 VAGYTHNRFASHLRKYDDVFIYSGNNG--GRFGSHVKLNSKLKTADERTRVVGEVIKCLA 178
+ GY H RF +LR++ D+F +S N R +V LN L+ ++RTR V +VIK L
Sbjct: 107 IVGYIHKRFTEYLREFHDIFTFSQNGSCPDRVDGYVTLNLMLQKPEDRTRAVADVIKILG 166
Query: 179 EEELIPDIQNELYPVASTFGSPIFFSLDRAAAPYFGIKAYAVPLNGYVEKDGQKFLWIGK 238
++ +IP I+NELYPV +F +P+FFSL+RAAAPYFGIK Y V +NGYVE+DGQK LWIGK
Sbjct: 167 DKGIIPGIRNELYPVKPSFNAPVFFSLERAAAPYFGIKGYGVHMNGYVERDGQKLLWIGK 226
Query: 239 RSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNR-----YTSFTELD 293
RS KSTYPGMLD L GGLPHGI+CG N++KECEEEAGI R+I++R S+ ++D
Sbjct: 227 RSLSKSTYPGMLDHLVAGGLPHGISCGGNLVKECEEEAGISRAIADRAIAVGAVSYLDID 286
Query: 294 QW 295
Q+
Sbjct: 287 QY 288
>sp|P0C026|NUD24_ARATH Nudix hydrolase 24, chloroplastic OS=Arabidopsis thaliana GN=NUDT24
PE=2 SV=1
Length = 365
Score = 271 bits (692), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 130/247 (52%), Positives = 172/247 (69%), Gaps = 14/247 (5%)
Query: 54 RSLRVDTASISYRSSCTFTWDDVFRVSQPEYSPDDSSDLRGYFEKIKICNRGSEMQSEFF 113
R L V+T +S +FTW+DVF S+ EY P +SSDL G+ EK+ CNRG E EF
Sbjct: 42 RVLSVETVPLS----PSFTWNDVFENSRKEYVPQNSSDLTGFLEKVDRCNRGLEKLGEFI 97
Query: 114 PFIIEDQVAGYTHNRFASHLRKYDDVFIYSGNNGGRFGSHVKLNSKLKTADERTRVVGEV 173
PF+IE+Q+ GY H F +LR ++D+F +S ++G HV LN L +ERTR V V
Sbjct: 98 PFVIEEQIVGYIHKGFTKYLRDFNDIFTFS-----QYGGHVTLNMMLDKPEERTRAVAHV 152
Query: 174 IKCLAEEELIPDIQNELYPVASTFGSPIFFSLDRAAAPYFGIKAYAVPLNGYVEKDGQKF 233
IK L + +IP I+NELYPV +F +P FFS++RAAAPYFG+K YA+ +NGYVE+DGQKF
Sbjct: 153 IKILGNKGIIPGIRNELYPVKPSFNAPAFFSIERAAAPYFGLKGYAIHVNGYVERDGQKF 212
Query: 234 LWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNR-----YTS 288
LWIGKRS KSTYPG LD L GGLPHGI+ EN++KECEEEAGI + +++R S
Sbjct: 213 LWIGKRSLAKSTYPGKLDHLVAGGLPHGISVCENLVKECEEEAGISKVLADRAIAVGVVS 272
Query: 289 FTELDQW 295
+ ++D++
Sbjct: 273 YMDIDRY 279
>sp|P47173|YJ9J_YEAST Uncharacterized protein YJR142W OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=YJR142W PE=1 SV=1
Length = 342
Score = 62.0 bits (149), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 73/138 (52%), Gaps = 11/138 (7%)
Query: 152 SHVKLNSKLKTADERTRVVGEVIKCLAEEELIPDIQ---NELYPVASTFGSPIFFSLDRA 208
S +L K + D R ++ ++ + + E + ++ NE Y V + ++RA
Sbjct: 89 SRHELRFKSEDFDHRNNLIDQLARKMYLESSLSGVKGWRNEKYAVW--VNKKPYVLVERA 146
Query: 209 AAPYFGIKAYAVPLNGYV--EKDGQKFLWIGKRSQVKSTYPGMLD-ILAGG-GLPHGIAC 264
A GI Y + +NGYV K + W+ +RS+ K T+P MLD I+AGG G P+GI
Sbjct: 147 VAGVLGIITYGIHINGYVLDPKSKKVQFWVPRRSKTKQTWPLMLDNIIAGGLGYPYGIY- 205
Query: 265 GENIIKECEEEAGIPRSI 282
E ++KE EEA + +S+
Sbjct: 206 -ETVLKESMEEANLEKSV 222
>sp|P41888|TNR3_SCHPO Thiamine pyrophosphokinase OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=tnr3 PE=4 SV=1
Length = 569
Score = 52.4 bits (124), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 67/139 (48%), Gaps = 8/139 (5%)
Query: 151 GSHVKLNSKLKTADERTRVVGEVIKCLAEEE---LIPDIQNELYPVASTFGSPIFFSLDR 207
G ++++N+ T ++RT ++ +V++ + +NELY V P+ +++R
Sbjct: 68 GEYIEINAS--TFEKRTDILAKVLEHWRHNNTFGIADQWRNELYTVYGKSKKPVL-AVER 124
Query: 208 AAAPYFGIKAYAVPLNGYV--EKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACG 265
FG + V Y+ K+ +W+ +RS K T+P LD GG+ HG +
Sbjct: 125 GGFWLFGFLSTGVHCTMYIPATKEHPLRIWVPRRSPTKQTWPNYLDNSVAGGIAHGDSVI 184
Query: 266 ENIIKECEEEAGIPRSISN 284
+IKE EEA + S N
Sbjct: 185 GTMIKEFSEEANLDVSSMN 203
>sp|Q9RY71|Y079_DEIRA Nudix hydrolase DR_0079 OS=Deinococcus radiodurans (strain ATCC
13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 /
NCIMB 9279 / R1 / VKM B-1422) GN=DR_0079 PE=1 SV=1
Length = 171
Score = 38.1 bits (87), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 26/51 (50%)
Query: 228 KDGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGI 278
++ Q LWI +RS KS +P LD+ GG + G E +E EE +
Sbjct: 42 RNSQGQLWIPRRSPSKSLFPNALDVSVGGAVQSGETYEEAFRREAREELNV 92
>sp|Q9HUW9|Y4841_PSEAE Uncharacterized Nudix hydrolase PA4841 OS=Pseudomonas aeruginosa
(strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228)
GN=PA4841 PE=3 SV=2
Length = 169
Score = 36.6 bits (83), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%)
Query: 234 LWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRYTSF 289
L + +R+ K+ YPG D+ AGG + G ++ +E EEE GI ++ + F
Sbjct: 51 LCVQRRTLSKAVYPGYWDLAAGGMVQAGEPYADSAARELEEELGIRDAVLREHGRF 106
>sp|Q1PDC4|L_MABVR RNA-directed RNA polymerase L OS=Lake Victoria marburgvirus (strain
Ravn-87) GN=L PE=3 SV=1
Length = 2327
Score = 33.9 bits (76), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 156 LNSKLKTADERTRVVGEVIKCLAEEELIPDIQNELYPVASTFGSPIFFS 204
LN KL+ D RT IK + + +L P EL+ + +G P+ ++
Sbjct: 337 LNLKLQIPDNRTECAQNFIKTIIQAKLTPQQYCELFSLQKHWGHPVLYN 385
>sp|Q754I9|RRF2M_ASHGO Ribosome-releasing factor 2, mitochondrial OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=MEF2 PE=3 SV=1
Length = 835
Score = 32.0 bits (71), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 242 VKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGI 278
+KS +PG + +LAG + + G+ I+ C + GI
Sbjct: 431 IKSLHPGDIGVLAGANVADHVRTGDTIVAHCTSKDGI 467
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.137 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 120,011,738
Number of Sequences: 539616
Number of extensions: 5065341
Number of successful extensions: 11374
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 11352
Number of HSP's gapped (non-prelim): 19
length of query: 317
length of database: 191,569,459
effective HSP length: 117
effective length of query: 200
effective length of database: 128,434,387
effective search space: 25686877400
effective search space used: 25686877400
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)