Query 021094
Match_columns 317
No_of_seqs 193 out of 868
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 07:33:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021094.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021094hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02839 nudix hydrolase 100.0 2.3E-72 5E-77 545.3 25.2 271 36-317 21-298 (372)
2 KOG4313 Thiamine pyrophosphoki 100.0 4.1E-40 8.9E-45 304.9 16.5 206 93-317 11-229 (306)
3 cd03676 Nudix_hydrolase_3 Memb 100.0 3.8E-30 8.2E-35 226.0 13.7 122 185-316 1-128 (180)
4 PLN02791 Nudix hydrolase homol 99.8 8.4E-19 1.8E-23 185.0 11.8 93 187-281 2-94 (770)
5 PLN02552 isopentenyl-diphospha 99.8 2E-18 4.4E-23 161.5 12.7 92 187-282 21-135 (247)
6 cd02885 IPP_Isomerase Isopente 99.8 1.9E-18 4E-23 150.2 10.6 94 188-285 1-95 (165)
7 PRK03759 isopentenyl-diphospha 99.7 8.4E-18 1.8E-22 149.0 11.3 91 187-281 4-95 (184)
8 TIGR02150 IPP_isom_1 isopenten 99.7 1.1E-16 2.4E-21 138.7 11.7 88 191-284 1-89 (158)
9 PRK15393 NUDIX hydrolase YfcD; 99.7 9.9E-17 2.1E-21 142.2 10.6 102 187-292 8-109 (180)
10 cd04692 Nudix_Hydrolase_33 Mem 99.7 6.1E-16 1.3E-20 130.9 10.0 67 216-282 1-67 (144)
11 COG1443 Idi Isopentenyldiphosp 99.6 6.2E-15 1.3E-19 131.6 8.1 118 187-315 2-124 (185)
12 cd04697 Nudix_Hydrolase_38 Mem 99.4 1E-12 2.2E-17 108.9 8.3 71 219-292 2-72 (126)
13 cd04693 Nudix_Hydrolase_34 Mem 99.3 4.4E-12 9.6E-17 104.4 8.3 60 219-282 2-61 (127)
14 PRK15472 nucleoside triphospha 99.2 3E-11 6.4E-16 101.6 7.1 62 217-282 3-64 (141)
15 cd03426 CoAse Coenzyme A pyrop 99.1 2E-10 4.4E-15 99.3 7.5 66 217-284 2-68 (157)
16 cd04682 Nudix_Hydrolase_23 Mem 99.1 2.7E-10 5.9E-15 93.3 7.1 50 232-282 12-62 (122)
17 cd04664 Nudix_Hydrolase_7 Memb 99.0 1.7E-09 3.7E-14 89.1 7.3 61 218-283 2-62 (129)
18 cd04691 Nudix_Hydrolase_32 Mem 98.9 2.6E-09 5.7E-14 87.5 7.4 49 232-281 11-59 (117)
19 cd04694 Nudix_Hydrolase_35 Mem 98.9 4.9E-09 1.1E-13 90.2 6.9 51 231-282 12-62 (143)
20 PF00293 NUDIX: NUDIX domain; 98.8 5.5E-09 1.2E-13 84.5 5.7 64 217-284 2-65 (134)
21 cd04684 Nudix_Hydrolase_25 Con 98.8 3.6E-08 7.9E-13 79.9 9.3 50 232-284 11-60 (128)
22 cd04699 Nudix_Hydrolase_39 Mem 98.7 2E-08 4.3E-13 81.5 6.4 53 232-285 13-65 (129)
23 cd04683 Nudix_Hydrolase_24 Mem 98.7 2.9E-08 6.2E-13 80.5 6.9 48 232-281 11-58 (120)
24 cd04681 Nudix_Hydrolase_22 Mem 98.7 5.7E-08 1.2E-12 79.8 8.2 60 219-284 3-62 (130)
25 cd03427 MTH1 MutT homolog-1 (M 98.7 4E-08 8.6E-13 81.4 7.2 51 232-285 12-62 (137)
26 cd03425 MutT_pyrophosphohydrol 98.7 6.5E-08 1.4E-12 77.0 7.8 53 229-283 10-62 (124)
27 cd04673 Nudix_Hydrolase_15 Mem 98.7 1.5E-07 3.1E-12 75.9 9.2 49 233-284 12-60 (122)
28 PRK09438 nudB dihydroneopterin 98.7 6E-08 1.3E-12 82.1 6.8 54 219-280 9-62 (148)
29 cd03673 Ap6A_hydrolase Diadeno 98.6 2E-07 4.4E-12 75.8 9.6 59 221-285 5-63 (131)
30 cd04678 Nudix_Hydrolase_19 Mem 98.6 8.7E-08 1.9E-12 78.7 7.5 52 231-285 13-64 (129)
31 PRK10776 nucleoside triphospha 98.6 1.5E-07 3.3E-12 76.1 8.3 52 229-282 13-64 (129)
32 cd03671 Ap4A_hydrolase_plant_l 98.6 8.7E-08 1.9E-12 81.5 7.1 57 218-282 4-60 (147)
33 cd04680 Nudix_Hydrolase_21 Mem 98.6 1E-07 2.2E-12 76.8 6.8 57 219-284 2-59 (120)
34 cd04688 Nudix_Hydrolase_29 Mem 98.6 2.8E-07 6.2E-12 75.6 9.2 47 233-285 13-59 (126)
35 cd04670 Nudix_Hydrolase_12 Mem 98.6 1.5E-07 3.3E-12 77.3 7.0 51 230-284 12-62 (127)
36 cd04696 Nudix_Hydrolase_37 Mem 98.6 1.2E-07 2.5E-12 77.9 6.1 48 232-284 14-61 (125)
37 cd04679 Nudix_Hydrolase_20 Mem 98.6 1.5E-07 3.2E-12 77.1 6.7 52 231-285 13-64 (125)
38 cd03430 GDPMH GDP-mannose glyc 98.6 1.4E-07 3E-12 80.6 6.8 59 219-283 14-72 (144)
39 cd02883 Nudix_Hydrolase Nudix 98.6 3.1E-07 6.7E-12 72.0 8.0 46 232-281 12-57 (123)
40 cd03424 ADPRase_NUDT5 ADP-ribo 98.5 1.7E-07 3.6E-12 77.8 6.7 63 217-284 2-64 (137)
41 cd04700 DR1025_like DR1025 fro 98.5 6.5E-07 1.4E-11 76.1 9.8 55 233-290 26-80 (142)
42 cd04677 Nudix_Hydrolase_18 Mem 98.5 1.4E-07 3.1E-12 77.3 5.6 59 218-285 8-66 (132)
43 cd04695 Nudix_Hydrolase_36 Mem 98.5 2.2E-07 4.9E-12 77.2 6.8 51 229-283 11-61 (131)
44 PRK15434 GDP-mannose mannosyl 98.5 2.4E-07 5.2E-12 81.5 6.7 50 230-282 27-76 (159)
45 PRK10546 pyrimidine (deoxy)nuc 98.5 9.7E-07 2.1E-11 72.9 9.4 50 232-283 15-64 (135)
46 cd04671 Nudix_Hydrolase_13 Mem 98.5 3.1E-07 6.7E-12 76.5 6.3 51 231-284 11-61 (123)
47 cd04676 Nudix_Hydrolase_17 Mem 98.5 3E-07 6.5E-12 74.1 6.0 48 230-283 12-59 (129)
48 cd03428 Ap4A_hydrolase_human_l 98.5 4.5E-07 9.9E-12 74.3 7.1 55 224-285 9-63 (130)
49 cd04685 Nudix_Hydrolase_26 Mem 98.5 1.4E-06 3.1E-11 73.9 10.1 63 218-284 1-64 (133)
50 cd03674 Nudix_Hydrolase_1 Memb 98.4 5.3E-07 1.1E-11 75.9 7.0 57 217-281 2-58 (138)
51 KOG0142 Isopentenyl pyrophosph 98.4 1.7E-07 3.8E-12 85.9 4.0 93 188-284 19-125 (225)
52 TIGR00586 mutt mutator mutT pr 98.4 1.5E-06 3.1E-11 70.8 8.7 53 229-283 13-65 (128)
53 cd04689 Nudix_Hydrolase_30 Mem 98.4 1.4E-06 3.1E-11 71.3 8.7 46 233-284 13-58 (125)
54 cd03429 NADH_pyrophosphatase N 98.4 7.6E-07 1.6E-11 74.6 6.1 50 231-284 11-60 (131)
55 PRK00714 RNA pyrophosphohydrol 98.3 1.1E-06 2.3E-11 76.3 6.7 57 219-283 10-66 (156)
56 cd03675 Nudix_Hydrolase_2 Cont 98.3 1.8E-06 3.9E-11 71.4 7.7 54 224-283 5-58 (134)
57 cd04669 Nudix_Hydrolase_11 Mem 98.3 1.7E-06 3.6E-11 71.3 6.5 49 232-284 12-60 (121)
58 cd04687 Nudix_Hydrolase_28 Mem 98.3 2.2E-06 4.8E-11 70.6 6.5 47 233-283 13-59 (128)
59 PRK10707 putative NUDIX hydrol 98.3 3.7E-06 8E-11 75.9 8.4 58 230-288 42-100 (190)
60 cd04662 Nudix_Hydrolase_5 Memb 98.3 2.5E-06 5.4E-11 73.0 6.9 56 225-281 8-65 (126)
61 cd04666 Nudix_Hydrolase_9 Memb 98.2 4.4E-06 9.4E-11 69.7 7.9 58 229-292 12-70 (122)
62 cd04511 Nudix_Hydrolase_4 Memb 98.2 2.4E-06 5.2E-11 71.0 6.0 49 232-283 24-72 (130)
63 PLN02325 nudix hydrolase 98.2 4E-06 8.8E-11 71.8 7.3 50 233-285 21-70 (144)
64 cd04672 Nudix_Hydrolase_14 Mem 98.2 3.8E-06 8.2E-11 68.9 6.2 44 233-282 14-57 (123)
65 cd04690 Nudix_Hydrolase_31 Mem 98.2 6.3E-06 1.4E-10 66.4 7.2 44 233-282 13-56 (118)
66 PRK00241 nudC NADH pyrophospha 98.1 4.2E-06 9.1E-11 78.9 6.5 56 223-284 136-191 (256)
67 cd03672 Dcp2p mRNA decapping e 98.1 5.4E-06 1.2E-10 71.3 6.5 45 232-282 14-58 (145)
68 cd04667 Nudix_Hydrolase_10 Mem 98.1 4.2E-06 9.2E-11 67.5 5.4 46 232-284 11-56 (112)
69 COG0494 MutT NTP pyrophosphohy 98.1 1.7E-05 3.8E-10 62.6 8.6 46 232-282 24-70 (161)
70 PRK08999 hypothetical protein; 98.1 1.3E-05 2.9E-10 76.0 9.0 61 221-283 6-66 (312)
71 PLN02709 nudix hydrolase 98.1 1.3E-05 2.9E-10 74.6 7.9 68 216-284 32-103 (222)
72 COG1051 ADP-ribose pyrophospha 98.0 1.6E-05 3.4E-10 68.8 7.4 62 219-285 10-71 (145)
73 cd04686 Nudix_Hydrolase_27 Mem 98.0 4.4E-05 9.5E-10 63.8 9.8 42 233-280 12-53 (131)
74 cd04661 MRP_L46 Mitochondrial 98.0 7.6E-06 1.6E-10 68.7 4.8 47 232-282 13-59 (132)
75 PRK05379 bifunctional nicotina 97.8 4.2E-05 9E-10 74.7 7.4 47 233-282 215-261 (340)
76 cd04665 Nudix_Hydrolase_8 Memb 97.8 7.7E-05 1.7E-09 62.5 7.4 52 233-291 12-63 (118)
77 KOG3084 NADH pyrophosphatase I 97.7 5.3E-05 1.2E-09 73.8 5.5 63 229-300 198-260 (345)
78 PRK11762 nudE adenosine nucleo 97.7 0.00014 3E-09 64.7 7.7 53 233-287 60-112 (185)
79 cd04663 Nudix_Hydrolase_6 Memb 97.6 0.00022 4.9E-09 60.9 6.9 51 223-280 4-55 (126)
80 TIGR02705 nudix_YtkD nucleosid 97.5 0.00059 1.3E-08 60.3 9.4 82 195-290 5-86 (156)
81 TIGR00052 nudix-type nucleosid 97.5 0.00031 6.7E-09 63.1 6.7 40 246-286 75-114 (185)
82 cd04674 Nudix_Hydrolase_16 Mem 97.4 0.00047 1E-08 58.1 6.4 46 233-282 17-62 (118)
83 COG2816 NPY1 NTP pyrophosphohy 97.3 0.00025 5.4E-09 68.2 4.8 47 234-284 157-203 (279)
84 KOG3069 Peroxisomal NUDIX hydr 97.2 0.00097 2.1E-08 62.8 7.0 68 217-285 43-111 (246)
85 PRK10729 nudF ADP-ribose pyrop 97.0 0.003 6.4E-08 57.7 8.5 36 248-284 82-117 (202)
86 PLN03143 nudix hydrolase; Prov 96.7 0.018 3.9E-07 55.8 11.2 124 153-280 45-190 (291)
87 cd03670 ADPRase_NUDT9 ADP-ribo 96.6 0.0067 1.5E-07 55.2 6.9 44 230-279 47-90 (186)
88 PRK15009 GDP-mannose pyrophosp 96.2 0.0057 1.2E-07 55.4 4.5 32 253-285 83-114 (191)
89 KOG2839 Diadenosine and diphos 96.2 0.0036 7.8E-08 55.1 2.7 33 255-287 42-74 (145)
90 KOG3041 Nucleoside diphosphate 95.9 0.022 4.7E-07 52.9 6.4 62 218-283 74-137 (225)
91 cd03431 DNA_Glycosylase_C DNA 95.7 0.04 8.6E-07 43.6 6.9 45 232-278 14-58 (118)
92 KOG0648 Predicted NUDIX hydrol 88.9 4.6 9.9E-05 39.6 10.7 60 223-284 119-178 (295)
93 COG4112 Predicted phosphoester 83.4 3.6 7.8E-05 37.5 6.4 77 233-314 73-158 (203)
94 KOG4195 Transient receptor pot 73.5 8.1 0.00017 36.9 5.7 38 233-276 140-177 (275)
95 COG4119 Predicted NTP pyrophos 72.9 3 6.6E-05 36.7 2.6 33 248-281 36-68 (161)
96 PF14815 NUDIX_4: NUDIX domain 65.1 12 0.00026 30.0 4.5 52 230-284 7-58 (114)
97 KOG1202 Animal-type fatty acid 44.6 14 0.0003 43.1 2.1 65 218-282 224-295 (2376)
98 PF08057 Ery_res_leader2: Eryt 44.0 11 0.00024 20.7 0.6 12 8-19 1-12 (14)
99 COG1456 CdhE CO dehydrogenase/ 34.6 19 0.00042 36.7 1.2 36 245-285 387-422 (467)
100 COG5014 Predicted Fe-S oxidore 28.7 4.5E+02 0.0097 24.7 8.8 57 70-140 89-147 (228)
101 PF09170 STN1_2: CST, Suppress 23.9 99 0.0021 28.3 3.7 62 161-222 98-164 (174)
102 KOG1270 Methyltransferases [Co 23.3 52 0.0011 32.3 1.9 48 249-296 93-154 (282)
103 KOG3904 Predicted hydrolase RP 23.3 31 0.00068 32.3 0.4 31 249-279 10-40 (209)
104 PF11212 DUF2999: Protein of u 22.9 53 0.0012 26.3 1.5 17 267-283 58-74 (82)
105 PLN03090 auxin-responsive fami 21.2 5.1E+02 0.011 21.9 7.2 72 167-280 12-83 (104)
106 KOG4432 Uncharacterized NUDIX 20.5 1.6E+02 0.0034 29.7 4.5 35 248-282 78-112 (405)
No 1
>PLN02839 nudix hydrolase
Probab=100.00 E-value=2.3e-72 Score=545.29 Aligned_cols=271 Identities=52% Similarity=0.962 Sum_probs=240.4
Q ss_pred ecceeeeeeccccccceeeeeeecccccCcccccccccccceeecCCCCCCCCccchHHHHHHHHHhcCCCCCCCCeEeE
Q 021094 36 TFPVRFSVHSSAKLTTSIRSLRVDTASISYRSSCTFTWDDVFRVSQPEYSPDDSSDLRGYFEKIKICNRGSEMQSEFFPF 115 (317)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~I~~cN~~~~~~~~~~PF 115 (317)
++|+ |...|++.+..-....+...+..+++++++||||||||++++||++++++++++|+++|++||++.++++.|+||
T Consensus 21 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~cn~~~~~~~~~~Pf 99 (372)
T PLN02839 21 LIPT-LRWRSSSMSRSPLRHSRAVSAATTVPISSSFTWDDVIETGRAEYVPQNSSDLTGFLEKVDRCNRGSEKLGEFIPF 99 (372)
T ss_pred ccee-eEeecccccCCCCccccceeeEEeecccccccHHHHHhhcccccCccccchhhhhHHHHHHhhccccccccccCe
Confidence 4777 777774333333333333344455788899999999999999999999999999999999999998778999999
Q ss_pred EECCEEEEeecHHHHHHHhcCCCeEEeeCCC--CCcccceEEeccCCCCHHHHHHHHHHHHHHHHHcCCCCCccCCeeEe
Q 021094 116 IIEDQVAGYTHNRFASHLRKYDDVFIYSGNN--GGRFGSHVKLNSKLKTADERTRVVGEVIKCLAEEELIPDIQNELYPV 193 (317)
Q Consensus 116 ~i~g~~vGyI~p~~~~~L~~~~~vF~~~~~~--~~~~g~~V~L~p~l~t~e~RT~al~~v~~~Lr~~g~i~Gwr~E~~~V 193 (317)
+|+|++||||+|.++++|.+|+++|.+..++ .+.....|+|++.+.++++||+++++++++|+++|.++|||||+|+|
T Consensus 100 ~v~gq~VG~I~~~~~~~L~~~~~vF~~~~~~~~~~~~~~~V~L~~~~~t~~~Rt~al~~v~~~lr~~g~~~gWRnE~y~V 179 (372)
T PLN02839 100 VIEEQIVGYIHKGFTEYLREFHDIFTFSQNGSCPDRVDGHVTLNLMLQKPEDRTRAVADVIKILGDKGIIPGIRNELYPV 179 (372)
T ss_pred EECCEEEEEECHHHHHHHhhCccceeeccccccccccCceEEEecCCCCHHHHHHHHHHHHHHHHHcCCCCCcccCcccc
Confidence 9999999999999999999999999986421 11223689999999999999999999999999999999999999999
Q ss_pred eeCCCCceeEEEecccCCcCCccceeEEEEEEEEeCCceEEEEeecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHhh
Q 021094 194 ASTFGSPIFFSLDRAAAPYFGIKAYAVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECE 273 (317)
Q Consensus 194 ~~~~g~~~l~~ieRaa~~~fGl~~~gVHlngyv~~dg~~~lwV~rRS~~K~t~PG~wD~~vAGgv~aGEs~~ea~~RE~~ 273 (317)
++.+++++++.|||+|+++||+.+||||||||++++++.+|||+|||++|++|||||||+||||+++||++.||++|||+
T Consensus 180 ~~~~~~~~l~~iERaA~~lfGi~tyGVHlNGyv~~~g~~~lWV~RRS~tK~t~PGmLDn~VAGGi~aGesp~etliREa~ 259 (372)
T PLN02839 180 KPSFNAPVFFSLERAAAPYFGIKGYGVHMNGYVERDGQKFLWIGKRSLSKSTYPGMLDHLVAGGLPHGISCGENLVKECE 259 (372)
T ss_pred ccCCCCcceEEEeeccccccCceeEEEEEEEEEecCCCeEEEeeccCCCCCCCCChhhhccccCccCCCCHHHHHHHHHH
Confidence 99888899999999999999999999999999987788899999999999999999999999999999999999999999
Q ss_pred hhhCCCccccccce-----EEEEecCCCccccccccceeeeceEEEEeC
Q 021094 274 EEAGIPRSISNRYT-----SFTELDQWELFPIRTLMGLVTKEMLYFVTI 317 (317)
Q Consensus 274 EEAGL~~~l~~~~~-----SY~~~~~~~~~p~~~~~glv~pe~~yv~~~ 317 (317)
|||||+.+++++++ +|.++++. .++||++|+||.
T Consensus 260 EEAgLp~~l~~~~~~~G~VsY~~~~~~----------g~~~evly~YDL 298 (372)
T PLN02839 260 EEAGISKAIADRAIAVGAVSYMDIDQY----------CFKRDVLFCYDL 298 (372)
T ss_pred HHcCCCHHHHhcceEeEEEEEEEEcCC----------ccccCEEEEeee
Confidence 99999999887655 88877764 578999999994
No 2
>KOG4313 consensus Thiamine pyrophosphokinase [Nucleotide transport and metabolism]
Probab=100.00 E-value=4.1e-40 Score=304.87 Aligned_cols=206 Identities=27% Similarity=0.460 Sum_probs=173.0
Q ss_pred HHHHHHHHHhcCCCCCCCCeEeEEECCEEEEeecHHHHHHHhcCCCeEE---eeCCCCCcccceEEeccCCCCHHHHHHH
Q 021094 93 RGYFEKIKICNRGSEMQSEFFPFIIEDQVAGYTHNRFASHLRKYDDVFI---YSGNNGGRFGSHVKLNSKLKTADERTRV 169 (317)
Q Consensus 93 ~~~l~~I~~cN~~~~~~~~~~PF~i~g~~vGyI~p~~~~~L~~~~~vF~---~~~~~~~~~g~~V~L~p~l~t~e~RT~a 169 (317)
-.+++..+.|.+|......-+||+.+|..||||.+.++++|.+.++.+. ...+ +.+ +.+ ..+++.|+..
T Consensus 11 ~~~~elmd~~~~f~~f~~g~i~~~~~~~~iG~v~~~vl~~lek~~~~~f~~~~~~~------e~~-~~~-a~~f~~r~~~ 82 (306)
T KOG4313|consen 11 LNAEELLDECDSFNGFVPGTIPFRANGAAIGYVTPLVLEILIKADNFKFNWVYVPG------EYI-EIN-ASTFEKRTDI 82 (306)
T ss_pred cCHHHHHHHHHHhcCccccceeceeccceeeeecHHHHHHHHhccchheeeeeccc------cce-ecc-cccchhhhhH
Confidence 4567777899988755556677778889999999999999999987542 2221 333 333 2578899999
Q ss_pred HHHHHHHHHHcCCC---CCccCCeeEeeeCCCCceeEEEecccCCcCCccceeEEEEEEEEe--CCceEEEEeecCCCCC
Q 021094 170 VGEVIKCLAEEELI---PDIQNELYPVASTFGSPIFFSLDRAAAPYFGIKAYAVPLNGYVEK--DGQKFLWIGKRSQVKS 244 (317)
Q Consensus 170 l~~v~~~Lr~~g~i---~Gwr~E~~~V~~~~g~~~l~~ieRaa~~~fGl~~~gVHlngyv~~--dg~~~lwV~rRS~~K~ 244 (317)
+++++++|+.++-+ .+||||+|.|| .+ .+|+..+||++.++||+..||||+|||+++ .+..+|||+|||++|+
T Consensus 83 ~~~~~~~~~~~~~l~~a~qwrne~Y~v~-~~-kkp~l~vERa~~~lfGv~~yGvhingYV~~pk~~~l~iWvprRS~TKq 160 (306)
T KOG4313|consen 83 LAKVLEHWRHNNTFGIADQWRNELYTVY-KS-KKPVLAVERAATPLFGVRKYGVHINGYVRHPKLGPLCIWVPRRSNTKQ 160 (306)
T ss_pred HHHHHHHHHHhccccchhcccceeeEEE-ec-CcceeEeeecccceeeEEEeeeeeeeeecCCCcCceEEEecccCCccc
Confidence 99999999887643 68999999999 43 689999999999999999999999999987 4457899999999999
Q ss_pred CCCCCcccccccCCCCCCCHHHHHHHHhhhhhCCCccccccce-----EEEEecCCCccccccccceeeeceEEEEeC
Q 021094 245 TYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRYT-----SFTELDQWELFPIRTLMGLVTKEMLYFVTI 317 (317)
Q Consensus 245 t~PG~wD~~vAGgv~aGEs~~ea~~RE~~EEAGL~~~l~~~~~-----SY~~~~~~~~~p~~~~~glv~pe~~yv~~~ 317 (317)
||||||||+||||+..|.++.|+++||+.|||+|+.++....+ ||.+...+ ..++||++||||.
T Consensus 161 TWP~~lDN~vaGGl~~g~gI~eT~iKE~~EEAnl~~~~~~Nlv~~G~VSy~~~esr---------~~~~pe~qYVfDL 229 (306)
T KOG4313|consen 161 TWPGKLDNMVAGGLSVGFGIKETAIKEAAEEANLPSDLVKNLVSAGCVSYYKFESR---------QGLFPETQYVFDL 229 (306)
T ss_pred cCcchhhhhhccccccCchHHHHHHHHHHHhcCCchhhHhcceecceeEEEeeehh---------hccCccceEEEec
Confidence 9999999999999999999999999999999999998877655 99865444 4567899999995
No 3
>cd03676 Nudix_hydrolase_3 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate spe
Probab=99.97 E-value=3.8e-30 Score=225.98 Aligned_cols=122 Identities=42% Similarity=0.766 Sum_probs=104.9
Q ss_pred CccCCeeEeeeCCCCceeEEEecccCCcCCccceeEEEEEEEEeC-CceEEEEeecCCCCCCCCCCcccccccCCCCCCC
Q 021094 185 DIQNELYPVASTFGSPIFFSLDRAAAPYFGIKAYAVPLNGYVEKD-GQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIA 263 (317)
Q Consensus 185 Gwr~E~~~V~~~~g~~~l~~ieRaa~~~fGl~~~gVHlngyv~~d-g~~~lwV~rRS~~K~t~PG~wD~~vAGgv~aGEs 263 (317)
|||+|+|+|||++| ++++.++|++++.+|+.|++||+++|+.++ ++++|||||||++|.+||||||+++|||+.+||+
T Consensus 1 ~~~~E~~~v~d~~~-~~~~~~~r~~~~~~g~~h~~v~~~~~~~~~~~~~~l~lqrRs~~K~~~Pg~wd~~~~G~v~~gE~ 79 (180)
T cd03676 1 GWRNELYAVYGPFG-EPLFEIERAASRLFGLVTYGVHLNGYVRDEDGGLRIWIPRRSPTKATWPGMLDNLVAGGLGHGEG 79 (180)
T ss_pred CCcCcceeeECCCC-CEeEEEEecccccCCceEEEEEEEEEEEcCCCCeEEEEEeccCCCCCCCCceeeecccCCCCCCC
Confidence 79999999999986 677999999999999999999999998752 2489999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhCCCcccccc-----ceEEEEecCCCccccccccceeeeceEEEEe
Q 021094 264 CGENIIKECEEEAGIPRSISNR-----YTSFTELDQWELFPIRTLMGLVTKEMLYFVT 316 (317)
Q Consensus 264 ~~ea~~RE~~EEAGL~~~l~~~-----~~SY~~~~~~~~~p~~~~~glv~pe~~yv~~ 316 (317)
+.+||+||++||+||+...... .++|.+... .+.+.+|+.|+|.
T Consensus 80 ~~~aA~REl~EE~Gl~~~~~~~l~~~g~~~~~~~~~---------~~~~~~e~~~~f~ 128 (180)
T cd03676 80 PEETLVKECDEEAGLPEDLVRQLKPVGVVSYLREGE---------AGGLQPEVEYVYD 128 (180)
T ss_pred HHHHHHHHHHHHhCCCHHHHhhceeccEEEEEEEcC---------CCcEeeeEEEEEE
Confidence 9999999999999998775442 125655411 2457788888874
No 4
>PLN02791 Nudix hydrolase homolog
Probab=99.78 E-value=8.4e-19 Score=185.00 Aligned_cols=93 Identities=27% Similarity=0.262 Sum_probs=84.4
Q ss_pred cCCeeEeeeCCCCceeEEEecccCCcCCccceeEEEEEEEEeCCceEEEEeecCCCCCCCCCCcccccccCCCCCCCHHH
Q 021094 187 QNELYPVASTFGSPIFFSLDRAAAPYFGIKAYAVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGE 266 (317)
Q Consensus 187 r~E~~~V~~~~g~~~l~~ieRaa~~~fGl~~~gVHlngyv~~dg~~~lwV~rRS~~K~t~PG~wD~~vAGgv~aGEs~~e 266 (317)
.+|+++|||++|+++.....|..+|..|+.|++||+++|+.+ +++|+|||||++|.+|||+||+++|||+.+||++.+
T Consensus 2 ~eE~~DI~De~g~~~G~~~~R~evH~~Gl~HrAvhVwIfn~~--~gelLLQkRS~~K~~~PG~WDiS~gGHv~aGEs~~e 79 (770)
T PLN02791 2 MEEHLDVLTAAGEKTGVSKPRGEVHRDGDYHRAVHVWIYSES--TQELLLQRRADCKDSWPGQWDISSAGHISAGDTSLL 79 (770)
T ss_pred CceEEEEECCCCCCCCccccHHhhccCCCceEEEEEEEEECC--CCeEEEEEecCCCCCCCCcccCcCCCCCCCCCCHHH
Confidence 479999999998655555899999999999999999999852 357999999999999999999999999999999999
Q ss_pred HHHHHhhhhhCCCcc
Q 021094 267 NIIKECEEEAGIPRS 281 (317)
Q Consensus 267 a~~RE~~EEAGL~~~ 281 (317)
+++||++||+||...
T Consensus 80 AA~REL~EELGI~l~ 94 (770)
T PLN02791 80 SAQRELEEELGIILP 94 (770)
T ss_pred HHHHHHHHHhCCCCC
Confidence 999999999999753
No 5
>PLN02552 isopentenyl-diphosphate delta-isomerase
Probab=99.77 E-value=2e-18 Score=161.48 Aligned_cols=92 Identities=13% Similarity=0.057 Sum_probs=81.8
Q ss_pred cCCeeEeeeCCCCceeEEEecccCCc------CCccceeEEEEEEEEeCCceEEEEeecCCCCCCCCCCcccccccCCCC
Q 021094 187 QNELYPVASTFGSPIFFSLDRAAAPY------FGIKAYAVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLPH 260 (317)
Q Consensus 187 r~E~~~V~~~~g~~~l~~ieRaa~~~------fGl~~~gVHlngyv~~dg~~~lwV~rRS~~K~t~PG~wD~~vAGgv~a 260 (317)
.+|.+.|||+++ ++++.+.|..+|. .|+.|+++|+.+|+. +++|+|||||++|.+|||+||++||||+.+
T Consensus 21 ~~e~v~lvDe~d-~~~G~~~r~~~H~~~~~~~~gl~Hra~~v~i~n~---~g~lLLQkRs~~K~~~Pg~Wd~s~~GHp~~ 96 (247)
T PLN02552 21 FEDECILVDEND-NVVGHDSKYNCHLFEKIEPRGLLHRAFSVFLFNS---KYELLLQQRAATKVTFPLVWTNTCCSHPLY 96 (247)
T ss_pred hcCeEEEEcCCC-CEEeeeEHhhhhccccccCCCceEEEEEEEEEcC---CCeEEEEEecCCCCCCCcceecccCCcccc
Confidence 469999999985 7899999998885 799999999999974 348999999999999999999999999999
Q ss_pred CCC-----------------HHHHHHHHhhhhhCCCccc
Q 021094 261 GIA-----------------CGENIIKECEEEAGIPRSI 282 (317)
Q Consensus 261 GEs-----------------~~ea~~RE~~EEAGL~~~l 282 (317)
||+ +.+||+||+.||+||....
T Consensus 97 ge~~~e~~~e~~~~~~~~~~~~eAA~REL~EElGI~~~~ 135 (247)
T PLN02552 97 GQDPNEVDRESELIDGNVLGVKNAAQRKLLHELGIPAED 135 (247)
T ss_pred ccccccccccccccccchhhHHHHHHhHHHHHhCCCccc
Confidence 854 5789999999999998543
No 6
>cd02885 IPP_Isomerase Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway. Isoprenoids comprise a large family of natural products including sterols, carotenoids, dolichols and prenylated proteins. These compounds are synthesized from two precursors: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). IPP isomerase catalyzes the interconversion of IPP and DMAPP by a stereoselective antarafacial transposition of hydrogen. The enzyme requires one Mn2+ or Mg2+ ion in its active site to fold into an active conformation and also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. The metal binding site is present within the active site and plays structural and catalytical roles. IPP isomerase is well represented in several bacteria, archaebacteria and eukaryotes, including fungi, mamm
Probab=99.77 E-value=1.9e-18 Score=150.19 Aligned_cols=94 Identities=17% Similarity=0.147 Sum_probs=85.1
Q ss_pred CCeeEeeeCCCCceeEEEecccCCcCCcc-ceeEEEEEEEEeCCceEEEEeecCCCCCCCCCCcccccccCCCCCCCHHH
Q 021094 188 NELYPVASTFGSPIFFSLDRAAAPYFGIK-AYAVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGE 266 (317)
Q Consensus 188 ~E~~~V~~~~g~~~l~~ieRaa~~~fGl~-~~gVHlngyv~~dg~~~lwV~rRS~~K~t~PG~wD~~vAGgv~aGEs~~e 266 (317)
.|+++|||+++ .+++..+|+.++..|+. +.+||+.++.. ++++|++||+..|..|||.||.++||++.+||++.+
T Consensus 1 ~e~~~~~d~~~-~~~g~~~r~~~~~~~~~~~~~v~v~i~~~---~~~iLl~kR~~~~~~~Pg~w~~~~gG~ie~GEt~~e 76 (165)
T cd02885 1 EELVILVDEDD-NPIGTAEKLEAHLKGTLLHRAFSVFLFNS---KGRLLLQRRALSKYTFPGLWTNTCCSHPLPGEGVKD 76 (165)
T ss_pred CcEEEEECCCC-CCccccCHHHHhhcCCcceeEEEEEEEcC---CCcEEEEeccCCCccCCCcccccccCCCCCCCCHHH
Confidence 48999999996 67789999999999999 99999988763 347999999999999999999999999999999999
Q ss_pred HHHHHhhhhhCCCcccccc
Q 021094 267 NIIKECEEEAGIPRSISNR 285 (317)
Q Consensus 267 a~~RE~~EEAGL~~~l~~~ 285 (317)
|++||++||+||..+....
T Consensus 77 aa~REl~EEtGl~~~~~~~ 95 (165)
T cd02885 77 AAQRRLREELGITGDLLEL 95 (165)
T ss_pred HHHHHHHHHhCCCccchhh
Confidence 9999999999999775544
No 7
>PRK03759 isopentenyl-diphosphate delta-isomerase; Provisional
Probab=99.75 E-value=8.4e-18 Score=149.02 Aligned_cols=91 Identities=22% Similarity=0.246 Sum_probs=82.7
Q ss_pred cCCeeEeeeCCCCceeEEEecccCCc-CCccceeEEEEEEEEeCCceEEEEeecCCCCCCCCCCcccccccCCCCCCCHH
Q 021094 187 QNELYPVASTFGSPIFFSLDRAAAPY-FGIKAYAVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACG 265 (317)
Q Consensus 187 r~E~~~V~~~~g~~~l~~ieRaa~~~-fGl~~~gVHlngyv~~dg~~~lwV~rRS~~K~t~PG~wD~~vAGgv~aGEs~~ 265 (317)
..|+++|||+++ ++++.++|..++. .|..+++|++.++. ++++++++||+..|..+||+||+++||++.+||++.
T Consensus 4 ~~E~~~~vd~~~-~~~g~~~r~~~~~~~~~~h~av~v~i~~---~~g~vLL~rR~~~~~~~PG~w~~~~gG~ve~GEt~~ 79 (184)
T PRK03759 4 ETELVVLLDEQG-VPTGTAEKAAAHTADTPLHLAFSCYLFD---ADGRLLVTRRALSKKTWPGVWTNSCCGHPQPGESLE 79 (184)
T ss_pred CceeEEEECCCC-CCcccccHHHHHhcCCCeeeEEEEEEEc---CCCeEEEEEccCCCCCCCCcccccccCCCCCCCCHH
Confidence 579999999995 7788999999995 79999999987765 335799999999999999999999999999999999
Q ss_pred HHHHHHhhhhhCCCcc
Q 021094 266 ENIIKECEEEAGIPRS 281 (317)
Q Consensus 266 ea~~RE~~EEAGL~~~ 281 (317)
+|++||+.||+||...
T Consensus 80 ~aa~REl~EEtGl~~~ 95 (184)
T PRK03759 80 DAVIRRCREELGVEIT 95 (184)
T ss_pred HHHHHHHHHHhCCCcc
Confidence 9999999999999875
No 8
>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1. This model represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate.
Probab=99.70 E-value=1.1e-16 Score=138.70 Aligned_cols=88 Identities=19% Similarity=0.114 Sum_probs=77.7
Q ss_pred eEeeeCCCCceeEEEecccCCc-CCccceeEEEEEEEEeCCceEEEEeecCCCCCCCCCCcccccccCCCCCCCHHHHHH
Q 021094 191 YPVASTFGSPIFFSLDRAAAPY-FGIKAYAVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENII 269 (317)
Q Consensus 191 ~~V~~~~g~~~l~~ieRaa~~~-fGl~~~gVHlngyv~~dg~~~lwV~rRS~~K~t~PG~wD~~vAGgv~aGEs~~ea~~ 269 (317)
++|||+++ .+++...|..++. .|+.|.+|++.++.. +++++++||+.+|..+||+||.++||++.+|| .+|++
T Consensus 1 ~~~~d~~~-~~~g~~~r~~~~~~~g~~h~~v~v~v~~~---~g~vLl~kR~~~k~~~PG~W~~~~gG~v~~GE--~eaa~ 74 (158)
T TIGR02150 1 VILVDEND-NPIGTASKAEVHLQETPLHRAFSVFLFNE---EGQLLLQRRALSKITWPGVWTNSCCSHPLPGE--LEAAI 74 (158)
T ss_pred CEEECCCC-CEeeeeeHHHhhhcCCCeEEEEEEEEEcC---CCeEEEEeccCCCcCCCCCccccccCCCCccc--HHHHH
Confidence 47899985 7788999999995 699999999887753 35799999999999999999999999999999 49999
Q ss_pred HHhhhhhCCCccccc
Q 021094 270 KECEEEAGIPRSISN 284 (317)
Q Consensus 270 RE~~EEAGL~~~l~~ 284 (317)
||++||+||.....+
T Consensus 75 REl~EE~Gl~~~~~~ 89 (158)
T TIGR02150 75 RRLREELGIPADDVP 89 (158)
T ss_pred HHHHHHHCCCccccc
Confidence 999999999876554
No 9
>PRK15393 NUDIX hydrolase YfcD; Provisional
Probab=99.69 E-value=9.9e-17 Score=142.24 Aligned_cols=102 Identities=23% Similarity=0.213 Sum_probs=86.9
Q ss_pred cCCeeEeeeCCCCceeEEEecccCCcCCccceeEEEEEEEEeCCceEEEEeecCCCCCCCCCCcccccccCCCCCCCHHH
Q 021094 187 QNELYPVASTFGSPIFFSLDRAAAPYFGIKAYAVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGE 266 (317)
Q Consensus 187 r~E~~~V~~~~g~~~l~~ieRaa~~~fGl~~~gVHlngyv~~dg~~~lwV~rRS~~K~t~PG~wD~~vAGgv~aGEs~~e 266 (317)
-.|+++|||.++ .+++.++|..++..|+.+.++++.++. .+++++++||+..|..+||+||.+.||++.+||++.+
T Consensus 8 ~~e~~~~~d~~~-~~~g~~~~~~~~~~~~~h~~~~v~v~~---~~g~iLL~~R~~~~~~~pg~~~~~pGG~ve~GEs~~e 83 (180)
T PRK15393 8 STEWVDIVNENN-EVIAQASREQMRAQCLRHRATYIVVHD---GMGKILVQRRTETKDFLPGMLDATAGGVVQAGEQLLE 83 (180)
T ss_pred CceEEEEECCCC-CEeeEEEHHHHhhCCCceEEEEEEEEC---CCCeEEEEEeCCCCCCCCCcccccCCCcCCCCCCHHH
Confidence 368999999985 788999999999999999999987765 3457999999999999999999999999999999999
Q ss_pred HHHHHhhhhhCCCccccccceEEEEe
Q 021094 267 NIIKECEEEAGIPRSISNRYTSFTEL 292 (317)
Q Consensus 267 a~~RE~~EEAGL~~~l~~~~~SY~~~ 292 (317)
|++||+.||+||.........+|.+.
T Consensus 84 AA~REL~EEtGl~~~~~~~~~~~~~~ 109 (180)
T PRK15393 84 SARREAEEELGIAGVPFAEHGQFYFE 109 (180)
T ss_pred HHHHHHHHHHCCCCccceeceeEEec
Confidence 99999999999975433322244443
No 10
>cd04692 Nudix_Hydrolase_33 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.65 E-value=6.1e-16 Score=130.86 Aligned_cols=67 Identities=31% Similarity=0.390 Sum_probs=61.7
Q ss_pred cceeEEEEEEEEeCCceEEEEeecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHhhhhhCCCccc
Q 021094 216 KAYAVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSI 282 (317)
Q Consensus 216 ~~~gVHlngyv~~dg~~~lwV~rRS~~K~t~PG~wD~~vAGgv~aGEs~~ea~~RE~~EEAGL~~~l 282 (317)
+|++||+.+++..++++++|++||+..|..|||+||++++|++..||++.+||+||+.||+||..+.
T Consensus 1 ~h~~v~~~v~~~~~~~~~vLl~~R~~~~~~~pg~W~~~~gG~ve~gEt~~~aa~REl~EEtGl~~~~ 67 (144)
T cd04692 1 WHRTFHCWIITKDEGKGYVLLQKRSANKKTYPGLWDISSAGHILAGETPLEDGIRELEEELGLDVSA 67 (144)
T ss_pred CceEEEEEEEEccCCCCEEEEEecCCCCCCCCCccccccCcccCCCCCHHHHHHHHHHHHhCCCCCh
Confidence 4789999999986666899999999999999999999999999999999999999999999997643
No 11
>COG1443 Idi Isopentenyldiphosphate isomerase [Lipid metabolism]
Probab=99.57 E-value=6.2e-15 Score=131.60 Aligned_cols=118 Identities=16% Similarity=0.072 Sum_probs=97.0
Q ss_pred cCCeeEeeeCCCCceeEEEecccCCcCCcc--ceeEEEEEEEEeCCceEEEEeecCCCCCCCCCCcccccccCCCCCCCH
Q 021094 187 QNELYPVASTFGSPIFFSLDRAAAPYFGIK--AYAVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIAC 264 (317)
Q Consensus 187 r~E~~~V~~~~g~~~l~~ieRaa~~~fGl~--~~gVHlngyv~~dg~~~lwV~rRS~~K~t~PG~wD~~vAGgv~aGEs~ 264 (317)
.+|.+-++|.++ .+++..++.++|.---. |++.-+..|+. +++|+|+||+..|.+|||.|+|+|+||..+||+.
T Consensus 2 ~~e~vill~~~d-~~~G~~~k~~~Ht~d~~~LHrAFS~~lFne---~g~LLltrRA~~K~twP~vWTNSvCsHP~~~es~ 77 (185)
T COG1443 2 MTEDVILLNDDD-VPTGTAEKLAAHTGDTPRLHRAFSSFLFNE---RGQLLLTRRALSKKTWPGVWTNSVCSHPLPGESN 77 (185)
T ss_pred CceeEEEECCCC-CccccchhhhhhccccHHHHhhhheeEECC---CCceeeehhhhhcccCcccccccccCCCcCCCch
Confidence 367778888875 78899999998875443 88888888875 3469999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhCCCccccccce---EEEEecCCCccccccccceeeeceEEEE
Q 021094 265 GENIIKECEEEAGIPRSISNRYT---SFTELDQWELFPIRTLMGLVTKEMLYFV 315 (317)
Q Consensus 265 ~ea~~RE~~EEAGL~~~l~~~~~---SY~~~~~~~~~p~~~~~glv~pe~~yv~ 315 (317)
.++++|-|.+|+||..+-..+.. .|.|... ...|.++.||+|||
T Consensus 78 ~~A~~rRl~~ELGie~~~~d~~~il~rf~YrA~-------~~~~~~E~Eic~V~ 124 (185)
T COG1443 78 EDAARRRLAYELGIEPDQYDKLEILPRFRYRAA-------DPDGIVENEICPVL 124 (185)
T ss_pred HHHHHHHHHHHhCCCCcccCccccccceEEecc-------CCCCcceeeeeeEE
Confidence 99999999999999988533221 4444433 45699999999997
No 12
>cd04697 Nudix_Hydrolase_38 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.39 E-value=1e-12 Score=108.90 Aligned_cols=71 Identities=28% Similarity=0.253 Sum_probs=58.1
Q ss_pred eEEEEEEEEeCCceEEEEeecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHhhhhhCCCccccccceEEEEe
Q 021094 219 AVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRYTSFTEL 292 (317)
Q Consensus 219 gVHlngyv~~dg~~~lwV~rRS~~K~t~PG~wD~~vAGgv~aGEs~~ea~~RE~~EEAGL~~~l~~~~~SY~~~ 292 (317)
++++.+++. +++|+++||+.+|..+||+|+.+.||++.+||++.++++||+.||+||+..-.....+|.+.
T Consensus 2 ~~~v~i~~~---~~~iLl~~R~~~~~~~~g~w~~~~GG~ve~gE~~~~aa~REl~EEtGl~~~~l~~~~~~~~~ 72 (126)
T cd04697 2 ATYIFVFNS---EGKLCVHKRTLTKDWCPGYWDIAFGGVVQAGESYLQNAQRELEEELGIDGVQLTPLGLFYYD 72 (126)
T ss_pred eEEEEEEcC---CCeEEEEECCCCCCCCCCcccCcCCcccCCCCCHHHHHHHHHHHHHCCCccccEEeeEEEec
Confidence 466666653 34799999999999999999998899999999999999999999999987633333355543
No 13
>cd04693 Nudix_Hydrolase_34 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.33 E-value=4.4e-12 Score=104.43 Aligned_cols=60 Identities=28% Similarity=0.421 Sum_probs=51.8
Q ss_pred eEEEEEEEEeCCceEEEEeecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHhhhhhCCCccc
Q 021094 219 AVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSI 282 (317)
Q Consensus 219 gVHlngyv~~dg~~~lwV~rRS~~K~t~PG~wD~~vAGgv~aGEs~~ea~~RE~~EEAGL~~~l 282 (317)
.|++.+++ .+++++++||+..|..+||+||..+||++.+||++ +|++||++||+||....
T Consensus 2 ~v~v~~~~---~~g~vLl~~R~~~~~~~pg~w~~p~GG~ve~gE~~-~aa~REl~EEtGl~~~~ 61 (127)
T cd04693 2 VVHVCIFN---SKGELLLQKRSPNKDGWPGMWDLSVGGHVQAGETS-TAAEREVKEELGLELDF 61 (127)
T ss_pred eEEEEEEe---CCCeEEEEEccCCCCCCCCcccccCCCcCCCCCCH-HHHHHHHHHHhCCCcCh
Confidence 35555544 23479999999999999999999999999999999 99999999999998764
No 14
>PRK15472 nucleoside triphosphatase NudI; Provisional
Probab=99.21 E-value=3e-11 Score=101.58 Aligned_cols=62 Identities=21% Similarity=0.291 Sum_probs=52.8
Q ss_pred ceeEEEEEEEEeCCceEEEEeecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHhhhhhCCCccc
Q 021094 217 AYAVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSI 282 (317)
Q Consensus 217 ~~gVHlngyv~~dg~~~lwV~rRS~~K~t~PG~wD~~vAGgv~aGEs~~ea~~RE~~EEAGL~~~l 282 (317)
.+.+++.+++. + ++++++||+..|..|||+|+.. +|++.+||++.+|++||+.||+||...+
T Consensus 3 ~r~~~~~ii~~-~--~~vLl~~R~~~~~~~~g~W~lP-gG~ve~gEs~~~aa~REl~EEtGl~~~~ 64 (141)
T PRK15472 3 QRTIVCPLIQN-D--GAYLLCKMADDRGVFPGQWALS-GGGVEPGERIEEALRREIREELGEQLLL 64 (141)
T ss_pred ceeEEEEEEec-C--CEEEEEEecccCCCCCCceeCC-cccCCCCCCHHHHHHHHHHHHHCCceee
Confidence 35667766664 3 4799999999999999999987 7999999999999999999999997543
No 15
>cd03426 CoAse Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes. The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules.
Probab=99.10 E-value=2e-10 Score=99.26 Aligned_cols=66 Identities=24% Similarity=0.327 Sum_probs=56.9
Q ss_pred ceeEEEEEEEEeCCceEEEEeecCCCCCCCCCCcccccccCCCCC-CCHHHHHHHHhhhhhCCCccccc
Q 021094 217 AYAVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHG-IACGENIIKECEEEAGIPRSISN 284 (317)
Q Consensus 217 ~~gVHlngyv~~dg~~~lwV~rRS~~K~t~PG~wD~~vAGgv~aG-Es~~ea~~RE~~EEAGL~~~l~~ 284 (317)
+.+|++..+.. +++.+++++||+..|..+||+|+. .||++..| |++.+||+||++||+||......
T Consensus 2 ~~av~v~l~~~-~~~~~vLL~~R~~~~~~~~g~w~l-PGG~ve~gdEs~~eaa~REl~EEtGl~~~~~~ 68 (157)
T cd03426 2 RAAVLVLLVER-EGELRVLLTKRASHLRSHPGQVAF-PGGKVDPGDEDPVATALREAEEEIGLPPDSVE 68 (157)
T ss_pred ceEEEEEEEeC-CCceEEEEEEcccccccCCCcEEC-CCCCcCCCcCCHHHHHHHHHHHHhCCCccceE
Confidence 45788888875 445789999999999999999985 58999999 99999999999999999876443
No 16
>cd04682 Nudix_Hydrolase_23 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.08 E-value=2.7e-10 Score=93.34 Aligned_cols=50 Identities=30% Similarity=0.369 Sum_probs=46.0
Q ss_pred eEEEEeecCCC-CCCCCCCcccccccCCCCCCCHHHHHHHHhhhhhCCCccc
Q 021094 232 KFLWIGKRSQV-KSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSI 282 (317)
Q Consensus 232 ~~lwV~rRS~~-K~t~PG~wD~~vAGgv~aGEs~~ea~~RE~~EEAGL~~~l 282 (317)
++++++||+.. |..|||+|+ +.||++..||++.+|++||++||+||..+.
T Consensus 12 g~vLl~~r~~~~~~~~~g~w~-~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~ 62 (122)
T cd04682 12 GRLLLQLRDDKPGIPYPGHWD-LPGGHREGGETPLECVLRELLEEIGLTLPE 62 (122)
T ss_pred CEEEEEEccCCCCCCCCCcEe-CCCccccCCCCHHHHHHHHHHHHhCCcccc
Confidence 58999999998 899999998 558999999999999999999999998753
No 17
>cd04664 Nudix_Hydrolase_7 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=98.96 E-value=1.7e-09 Score=89.12 Aligned_cols=61 Identities=25% Similarity=0.347 Sum_probs=50.1
Q ss_pred eeEEEEEEEEeCCceEEEEeecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHhhhhhCCCcccc
Q 021094 218 YAVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSIS 283 (317)
Q Consensus 218 ~gVHlngyv~~dg~~~lwV~rRS~~K~t~PG~wD~~vAGgv~aGEs~~ea~~RE~~EEAGL~~~l~ 283 (317)
+.|.+..|... +++++++.||+.. +||+|+ +.+|++..||++.+|++||++||+||..+..
T Consensus 2 ~~~~v~~~~~~-~~~~vLL~~r~~~---~~~~w~-~PgG~ve~~Es~~~aa~RE~~EE~Gl~~~~~ 62 (129)
T cd04664 2 RSVLVVPYRLT-GEGRVLLLRRSDK---YAGFWQ-SVTGGIEDGESPAEAARREVAEETGLDPERL 62 (129)
T ss_pred cEEEEEEEEeC-CCCEEEEEEeCCC---CCCccc-ccCcccCCCCCHHHHHHHHHHHHHCCChhhe
Confidence 45666666532 3468999999877 999999 5799999999999999999999999986433
No 18
>cd04691 Nudix_Hydrolase_32 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.94 E-value=2.6e-09 Score=87.52 Aligned_cols=49 Identities=29% Similarity=0.520 Sum_probs=44.7
Q ss_pred eEEEEeecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHhhhhhCCCcc
Q 021094 232 KFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRS 281 (317)
Q Consensus 232 ~~lwV~rRS~~K~t~PG~wD~~vAGgv~aGEs~~ea~~RE~~EEAGL~~~ 281 (317)
+++++.||+.++..+||+|+ +.||++..||++.+|++||+.||+||...
T Consensus 11 ~~vLL~rR~~~~~~~~g~w~-lPgG~ve~gE~~~~aa~REl~EEtGl~~~ 59 (117)
T cd04691 11 DKVLLERRSLTKNADPGKLN-IPGGHIEAGESQEEALLREVQEELGVDPL 59 (117)
T ss_pred CEEEEEEeCCCCCCCCCeEE-CcceeecCCCCHHHHHHHHHHHHHCCCcc
Confidence 47999999999888999996 56999999999999999999999999853
No 19
>cd04694 Nudix_Hydrolase_35 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.86 E-value=4.9e-09 Score=90.25 Aligned_cols=51 Identities=22% Similarity=0.291 Sum_probs=46.9
Q ss_pred ceEEEEeecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHhhhhhCCCccc
Q 021094 231 QKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSI 282 (317)
Q Consensus 231 ~~~lwV~rRS~~K~t~PG~wD~~vAGgv~aGEs~~ea~~RE~~EEAGL~~~l 282 (317)
+++++++||+..|..|||+|+.. +|++.+||++.+|++||+.||+||....
T Consensus 12 ~~~vLl~rr~~~~~~~~g~w~~P-gG~v~~~E~~~~aa~RE~~EE~gi~~~~ 62 (143)
T cd04694 12 DQKLLLTRRASSLRIFPNVWVPP-GGHVELGENLLEAGLRELNEETGLTLDP 62 (143)
T ss_pred CCEEEEEEECCCCCCCCCeEECc-ccccCCCCCHHHHHHHHHHHHHCCCccc
Confidence 45899999999998999999976 8999999999999999999999998764
No 20
>PF00293 NUDIX: NUDIX domain; InterPro: IPR000086 The generic name 'NUDIX hydrolases' (NUcleoside DIphosphate linked to some other moiety X) has been coined for this domain family []. The family can be divided into a number of subgroups, of which MutT anti- mutagenic activity represents only one type; most of the rest hydrolyse diverse nucleoside diphosphate derivatives (including ADP-ribose, GDP- mannose, TDP-glucose, NADH, UDP-sugars, dNTP and NTP).; GO: 0016787 hydrolase activity; PDB: 3FJY_A 3MGM_A 2XSQ_A 3COU_A 2O5F_A 1Q27_A 3F6A_A 3E57_B 3SON_B 2GT4_C ....
Probab=98.83 E-value=5.5e-09 Score=84.50 Aligned_cols=64 Identities=30% Similarity=0.387 Sum_probs=53.8
Q ss_pred ceeEEEEEEEEeCCceEEEEeecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHhhhhhCCCccccc
Q 021094 217 AYAVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISN 284 (317)
Q Consensus 217 ~~gVHlngyv~~dg~~~lwV~rRS~~K~t~PG~wD~~vAGgv~aGEs~~ea~~RE~~EEAGL~~~l~~ 284 (317)
+.+|.+.+++. .+ ++++.||+..+..+||+|+. .||++..||++.+|++||+.||+||......
T Consensus 2 ~~~v~~ii~~~--~~-~vLl~~r~~~~~~~~~~~~~-pgG~i~~~E~~~~aa~REl~EE~g~~~~~~~ 65 (134)
T PF00293_consen 2 RRAVGVIIFNE--DG-KVLLIKRSRSPITFPGYWEL-PGGGIEPGESPEEAARRELKEETGLDVSPLE 65 (134)
T ss_dssp EEEEEEEEEET--TT-EEEEEEESTTSSSSTTEEES-SEEEECTTSHHHHHHHHHHHHHHSEEEEEEE
T ss_pred CCEEEEEEEeC--Cc-EEEEEEecCCCCCCCCeEec-ceeeEEcCCchhhhHHhhhhhcccceecccc
Confidence 45667666663 22 89999999999899999986 7999999999999999999999999874433
No 21
>cd04684 Nudix_Hydrolase_25 Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability
Probab=98.79 E-value=3.6e-08 Score=79.85 Aligned_cols=50 Identities=28% Similarity=0.426 Sum_probs=43.8
Q ss_pred eEEEEeecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHhhhhhCCCccccc
Q 021094 232 KFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISN 284 (317)
Q Consensus 232 ~~lwV~rRS~~K~t~PG~wD~~vAGgv~aGEs~~ea~~RE~~EEAGL~~~l~~ 284 (317)
+++++.||+..+ ++|+|+.. ||++..||++.+|++||++||+||......
T Consensus 11 ~~vLl~~~~~~~--~~~~w~lP-gG~ve~gE~~~~aa~RE~~EEtGl~~~~~~ 60 (128)
T cd04684 11 GKLLLIQKNGGP--YEGRWDLP-GGGIEPGESPEEALHREVLEETGLTVEIGR 60 (128)
T ss_pred CEEEEEEccCCC--CCCeEECC-CcccCCCCCHHHHHHHHHHHHhCcEeecce
Confidence 479999998775 89999965 999999999999999999999999876543
No 22
>cd04699 Nudix_Hydrolase_39 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.75 E-value=2e-08 Score=81.53 Aligned_cols=53 Identities=30% Similarity=0.379 Sum_probs=47.4
Q ss_pred eEEEEeecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHhhhhhCCCcccccc
Q 021094 232 KFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNR 285 (317)
Q Consensus 232 ~~lwV~rRS~~K~t~PG~wD~~vAGgv~aGEs~~ea~~RE~~EEAGL~~~l~~~ 285 (317)
+++++.||+..+..++|+|+.. +|++..||++.+|++||+.||+|+.......
T Consensus 13 ~~iLl~kr~~~~~~~~g~w~~P-gG~ve~gEs~~~aa~RE~~EE~Gl~~~~~~~ 65 (129)
T cd04699 13 GRILILKRSKDERTAPGKWELP-GGKVEEGETFEEALKREVYEETGLTVTPFLR 65 (129)
T ss_pred CcEEEEEecCCCCCCCCcCcCC-ccCccCCCCHHHHHHHHHHHhhCcEEEeeee
Confidence 4799999999988899999974 8999999999999999999999998765444
No 23
>cd04683 Nudix_Hydrolase_24 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.73 E-value=2.9e-08 Score=80.48 Aligned_cols=48 Identities=19% Similarity=0.308 Sum_probs=42.3
Q ss_pred eEEEEeecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHhhhhhCCCcc
Q 021094 232 KFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRS 281 (317)
Q Consensus 232 ~~lwV~rRS~~K~t~PG~wD~~vAGgv~aGEs~~ea~~RE~~EEAGL~~~ 281 (317)
+++++.||+..+ .+||+|+.. +|++..||++.+|++||+.||+||...
T Consensus 11 ~~vLL~~r~~~~-~~~~~w~lP-gG~ve~gE~~~~aa~REl~EEtGl~v~ 58 (120)
T cd04683 11 DEVLLQRRANTG-YMDGQWALP-AGHLEKGEDAVTAAVREAREEIGVTLD 58 (120)
T ss_pred CEEEEEEccCCC-CCCCeEeCC-ccccCCCCCHHHHHHHHHHHHHCCccC
Confidence 379999998764 469999965 999999999999999999999999765
No 24
>cd04681 Nudix_Hydrolase_22 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.71 E-value=5.7e-08 Score=79.78 Aligned_cols=60 Identities=28% Similarity=0.336 Sum_probs=48.1
Q ss_pred eEEEEEEEEeCCceEEEEeecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHhhhhhCCCccccc
Q 021094 219 AVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISN 284 (317)
Q Consensus 219 gVHlngyv~~dg~~~lwV~rRS~~K~t~PG~wD~~vAGgv~aGEs~~ea~~RE~~EEAGL~~~l~~ 284 (317)
+|.+.+++. ++++++.||+..+ +||+|+. .+|++..||++.+|++||+.||+||......
T Consensus 3 av~~~i~~~---~~~vLL~~r~~~~--~~~~w~~-PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~ 62 (130)
T cd04681 3 AVGVLILNE---DGELLVVRRAREP--GKGTLDL-PGGFVDPGESAEEALIREIREETGLKVTELS 62 (130)
T ss_pred eEEEEEEcC---CCcEEEEEecCCC--CCCcEeC-CceeecCCCCHHHHHHHHHHHHhCCccccee
Confidence 455555542 3479999998764 6999997 5999999999999999999999999876433
No 25
>cd03427 MTH1 MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily. MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved nudix motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a m
Probab=98.71 E-value=4e-08 Score=81.41 Aligned_cols=51 Identities=22% Similarity=0.161 Sum_probs=44.7
Q ss_pred eEEEEeecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHhhhhhCCCcccccc
Q 021094 232 KFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNR 285 (317)
Q Consensus 232 ~~lwV~rRS~~K~t~PG~wD~~vAGgv~aGEs~~ea~~RE~~EEAGL~~~l~~~ 285 (317)
+++++.+|+..+ ++|+|. +.||++..||++.+|++||+.||+||.....+.
T Consensus 12 ~~vLL~~r~~~~--~~~~w~-~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~ 62 (137)
T cd03427 12 DKVLLLNRKKGP--GWGGWN-GPGGKVEPGETPEECAIRELKEETGLTIDNLKL 62 (137)
T ss_pred CEEEEEEecCCC--CCCeEe-CCceeCCCCCCHHHHHHHHHHHhhCeEeecceE
Confidence 479999999886 899996 569999999999999999999999998765543
No 26
>cd03425 MutT_pyrophosphohydrolase The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi). This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides.
Probab=98.69 E-value=6.5e-08 Score=77.03 Aligned_cols=53 Identities=25% Similarity=0.431 Sum_probs=46.3
Q ss_pred CCceEEEEeecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHhhhhhCCCcccc
Q 021094 229 DGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSIS 283 (317)
Q Consensus 229 dg~~~lwV~rRS~~K~t~PG~wD~~vAGgv~aGEs~~ea~~RE~~EEAGL~~~l~ 283 (317)
+++++++++||+..+ .++|+|+. .+|++..||++.+++.||+.||+|+.....
T Consensus 10 ~~~~~~Ll~~r~~~~-~~~g~w~~-p~G~~~~~e~~~~~a~Re~~EE~g~~~~~~ 62 (124)
T cd03425 10 DDDGRILIAQRPAGK-HLGGLWEF-PGGKVEPGETPEQALVRELREELGIEVEVG 62 (124)
T ss_pred CCCCEEEEEEeCCCC-CCCCeEeC-CCcccCCCCCHHHHHHHHHHHhhCcEEecc
Confidence 444589999999887 89999996 589999999999999999999999986543
No 27
>cd04673 Nudix_Hydrolase_15 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.67 E-value=1.5e-07 Score=75.89 Aligned_cols=49 Identities=18% Similarity=0.363 Sum_probs=41.9
Q ss_pred EEEEeecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHhhhhhCCCccccc
Q 021094 233 FLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISN 284 (317)
Q Consensus 233 ~lwV~rRS~~K~t~PG~wD~~vAGgv~aGEs~~ea~~RE~~EEAGL~~~l~~ 284 (317)
++++.||+.. .++|+|+ +.+|++..||++.+||+||+.||+||......
T Consensus 12 ~vLl~~r~~~--~~~~~w~-~PgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~ 60 (122)
T cd04673 12 RVLLVRRANP--PDAGLWS-FPGGKVELGETLEQAALRELLEETGLEAEVGR 60 (122)
T ss_pred EEEEEEEcCC--CCCCeEE-CCCcccCCCCCHHHHHHHHHHHhhCcEeeece
Confidence 6888888753 5899999 56999999999999999999999999865443
No 28
>PRK09438 nudB dihydroneopterin triphosphate pyrophosphatase; Provisional
Probab=98.65 E-value=6e-08 Score=82.13 Aligned_cols=54 Identities=24% Similarity=0.316 Sum_probs=42.7
Q ss_pred eEEEEEEEEeCCceEEEEeecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHhhhhhCCCc
Q 021094 219 AVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPR 280 (317)
Q Consensus 219 gVHlngyv~~dg~~~lwV~rRS~~K~t~PG~wD~~vAGgv~aGEs~~ea~~RE~~EEAGL~~ 280 (317)
+|.+.++.. ++++++.||+. .||.|+. .+|++..|||+.+||+||++||+||..
T Consensus 9 ~v~~vi~~~---~~~vLl~~r~~----~~~~W~l-PgG~ve~gEs~~~aa~REl~EEtGl~~ 62 (148)
T PRK09438 9 SVLVVIYTP---DLGVLMLQRAD----DPDFWQS-VTGSLEEGETPAQTAIREVKEETGIDV 62 (148)
T ss_pred EEEEEEEeC---CCeEEEEEecC----CCCcEeC-CcccCCCCCCHHHHHHHHHHHHhCcCc
Confidence 455555542 23588877754 3799995 699999999999999999999999987
No 29
>cd03673 Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily. Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site.
Probab=98.65 E-value=2e-07 Score=75.79 Aligned_cols=59 Identities=22% Similarity=0.227 Sum_probs=46.9
Q ss_pred EEEEEEEeCCceEEEEeecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHhhhhhCCCcccccc
Q 021094 221 PLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNR 285 (317)
Q Consensus 221 Hlngyv~~dg~~~lwV~rRS~~K~t~PG~wD~~vAGgv~aGEs~~ea~~RE~~EEAGL~~~l~~~ 285 (317)
.+.++..+++++++++.||... |.|+.. +|++..||++.+|++||++||+|+.......
T Consensus 5 ~~ii~~~~~~~~~vLl~~~~~~-----~~w~~P-gG~v~~gEs~~~aa~REl~EEtGl~~~~~~~ 63 (131)
T cd03673 5 GGVVFRGSDGGIEVLLIHRPRG-----DDWSLP-KGKLEPGETPPEAAVREVEEETGIRAEVGDP 63 (131)
T ss_pred EEEEEEccCCCeEEEEEEcCCC-----CcccCC-CCccCCCCCHHHHHHHHHhhhhCCceEecce
Confidence 3444444345578999999754 899854 9999999999999999999999998776553
No 30
>cd04678 Nudix_Hydrolase_19 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.65 E-value=8.7e-08 Score=78.75 Aligned_cols=52 Identities=25% Similarity=0.307 Sum_probs=45.0
Q ss_pred ceEEEEeecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHhhhhhCCCcccccc
Q 021094 231 QKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNR 285 (317)
Q Consensus 231 ~~~lwV~rRS~~K~t~PG~wD~~vAGgv~aGEs~~ea~~RE~~EEAGL~~~l~~~ 285 (317)
+++++++||+.. .++|+|+. .||++..||++.+|++||+.||+|+.....+.
T Consensus 13 ~~~iLl~~r~~~--~~~~~w~~-PGG~ve~gEt~~~Aa~REl~EE~Gl~~~~~~~ 64 (129)
T cd04678 13 KGKVLLGKRKGS--HGAGTWAL-PGGHLEFGESFEECAAREVLEETGLHIENVQF 64 (129)
T ss_pred CCeEEEEeccCC--CCCCeEEC-CcccccCCCCHHHHHHHHHHHHhCCcccceEE
Confidence 358999999865 58899997 49999999999999999999999998766543
No 31
>PRK10776 nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=98.63 E-value=1.5e-07 Score=76.09 Aligned_cols=52 Identities=23% Similarity=0.419 Sum_probs=44.5
Q ss_pred CCceEEEEeecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHhhhhhCCCccc
Q 021094 229 DGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSI 282 (317)
Q Consensus 229 dg~~~lwV~rRS~~K~t~PG~wD~~vAGgv~aGEs~~ea~~RE~~EEAGL~~~l 282 (317)
+++++++++||+.. ..++|+|+. .+|++..||++.++++||+.||+|+....
T Consensus 13 ~~~~~vll~rR~~~-~~~~g~w~~-PgG~~~~gE~~~~a~~Re~~EE~gl~~~~ 64 (129)
T PRK10776 13 NPNNEIFITRRAAD-AHMAGKWEF-PGGKIEAGETPEQALIRELQEEVGITVQH 64 (129)
T ss_pred CCCCEEEEEEecCC-CCCCCeEEC-CceecCCCCCHHHHHHHHHHHHHCCceec
Confidence 44458999999876 468999995 58999999999999999999999997543
No 32
>cd03671 Ap4A_hydrolase_plant_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally
Probab=98.63 E-value=8.7e-08 Score=81.47 Aligned_cols=57 Identities=23% Similarity=0.384 Sum_probs=46.7
Q ss_pred eeEEEEEEEEeCCceEEEEeecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHhhhhhCCCccc
Q 021094 218 YAVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSI 282 (317)
Q Consensus 218 ~gVHlngyv~~dg~~~lwV~rRS~~K~t~PG~wD~~vAGgv~aGEs~~ea~~RE~~EEAGL~~~l 282 (317)
.+|.+...+. ++++++.||+..+ |+|+. .+|++.+||++.+||+||++||+||..+.
T Consensus 4 ~~v~~ii~~~---~~~vLL~~r~~~~----~~W~~-PgG~~e~gE~~~~aA~REv~EEtGl~~~~ 60 (147)
T cd03671 4 PNVGVVLFNE---DGKVFVGRRIDTP----GAWQF-PQGGIDEGEDPEQAALRELEEETGLDPDS 60 (147)
T ss_pred ceEEEEEEeC---CCEEEEEEEcCCC----CCEEC-CcCCCCCCcCHHHHHHHHHHHHHCCCcCc
Confidence 3555555543 3479999998876 99995 68999999999999999999999998644
No 33
>cd04680 Nudix_Hydrolase_21 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.61 E-value=1e-07 Score=76.80 Aligned_cols=57 Identities=19% Similarity=0.166 Sum_probs=44.8
Q ss_pred eEEEEEEEEeCCceEEEEeecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHhhhhhCCCcc-ccc
Q 021094 219 AVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRS-ISN 284 (317)
Q Consensus 219 gVHlngyv~~dg~~~lwV~rRS~~K~t~PG~wD~~vAGgv~aGEs~~ea~~RE~~EEAGL~~~-l~~ 284 (317)
+|++.+++. ++++++.||+..+ .|+.. +|++..||++.+|++||++||+|+... ...
T Consensus 2 ~~~~~i~~~---~~~vLL~~r~~~~-----~w~~P-gG~ve~gEt~~~aa~REl~EEtG~~~~~~~~ 59 (120)
T cd04680 2 GARAVVTDA---DGRVLLVRHTYGP-----GWYLP-GGGLERGETFAEAARRELLEELGIRLAVVAE 59 (120)
T ss_pred ceEEEEECC---CCeEEEEEECCCC-----cEeCC-CCcCCCCCCHHHHHHHHHHHHHCCccccccc
Confidence 456655542 3478888886543 89865 899999999999999999999999887 443
No 34
>cd04688 Nudix_Hydrolase_29 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.60 E-value=2.8e-07 Score=75.56 Aligned_cols=47 Identities=28% Similarity=0.454 Sum_probs=40.4
Q ss_pred EEEEeecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHhhhhhCCCcccccc
Q 021094 233 FLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNR 285 (317)
Q Consensus 233 ~lwV~rRS~~K~t~PG~wD~~vAGgv~aGEs~~ea~~RE~~EEAGL~~~l~~~ 285 (317)
+++++||+. .++|+ +.+|++..||++.+|++||+.||+||.....+.
T Consensus 13 ~vLl~~~~~-----~~~w~-lPgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~ 59 (126)
T cd04688 13 KLLVQKNPD-----ETFYR-PPGGGIEFGESSEEALIREFKEELGLKIEITRL 59 (126)
T ss_pred EEEEEEeCC-----CCeEE-CCCccccCCCCHHHHHHHHHHHHhCCceeccee
Confidence 799999875 57786 669999999999999999999999998766544
No 35
>cd04670 Nudix_Hydrolase_12 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.58 E-value=1.5e-07 Score=77.30 Aligned_cols=51 Identities=18% Similarity=0.235 Sum_probs=41.9
Q ss_pred CceEEEEeecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHhhhhhCCCccccc
Q 021094 230 GQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISN 284 (317)
Q Consensus 230 g~~~lwV~rRS~~K~t~PG~wD~~vAGgv~aGEs~~ea~~RE~~EEAGL~~~l~~ 284 (317)
++.++++.||... ++|+|... ||++..|||+.+|++||++||+||......
T Consensus 12 ~~~~vLl~~r~~~---~~~~w~~P-GG~ve~gEt~~~aa~RE~~EE~Gl~~~~~~ 62 (127)
T cd04670 12 EKNEVLVVQERNK---TPNGWKLP-GGLVDPGEDIFDGAVREVLEETGIDTEFVS 62 (127)
T ss_pred CCCeEEEEEccCC---CCCcEECC-CccCCCCCCHHHHHHHHHHHHHCCCcceeE
Confidence 3346777766443 89999975 999999999999999999999999876544
No 36
>cd04696 Nudix_Hydrolase_37 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.57 E-value=1.2e-07 Score=77.90 Aligned_cols=48 Identities=19% Similarity=0.365 Sum_probs=41.1
Q ss_pred eEEEEeecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHhhhhhCCCccccc
Q 021094 232 KFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISN 284 (317)
Q Consensus 232 ~~lwV~rRS~~K~t~PG~wD~~vAGgv~aGEs~~ea~~RE~~EEAGL~~~l~~ 284 (317)
+++++.||.. ++|+|.. .+|++..|||+.+|++||++||+||......
T Consensus 14 ~~iLL~r~~~----~~~~w~l-PGG~ve~gEs~~~aa~REl~EEtGl~~~~~~ 61 (125)
T cd04696 14 GRILLVRTTK----WRGLWGV-PGGKVEWGETLEEALKREFREETGLKLRDIK 61 (125)
T ss_pred CCEEEEEccC----CCCcEeC-CceeccCCCCHHHHHHHHHHHHhCCcccccc
Confidence 4789998752 6899995 6999999999999999999999999876544
No 37
>cd04679 Nudix_Hydrolase_20 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.57 E-value=1.5e-07 Score=77.11 Aligned_cols=52 Identities=25% Similarity=0.314 Sum_probs=43.8
Q ss_pred ceEEEEeecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHhhhhhCCCcccccc
Q 021094 231 QKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNR 285 (317)
Q Consensus 231 ~~~lwV~rRS~~K~t~PG~wD~~vAGgv~aGEs~~ea~~RE~~EEAGL~~~l~~~ 285 (317)
++++++.||+.. ..+|.|+.. +|++..||++.+|++||++||+||.....+.
T Consensus 13 ~~~vLL~~r~~~--~~~~~w~lP-gG~ve~gEt~~eaa~RE~~EEtGl~~~~~~~ 64 (125)
T cd04679 13 DGKLLLVKRLRA--PEAGHWGIP-GGKVDWMEAVEDAVVREIEEETGLSIHSTRL 64 (125)
T ss_pred CCEEEEEEecCC--CCCCeEeCC-eeeccCCCCHHHHHHHHHHHHHCCCcccceE
Confidence 347999999754 358999975 9999999999999999999999998766543
No 38
>cd03430 GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mannose mannosyl hydrolase (GDPMH)) is a member of the Nudix hydrolase superfamily. This class of enzymes is unique from other members of the superfamily in two aspects. First, it contains a modified Nudix signature sequence. The slight changes to the conserved sequence motif, GX5EX7REUXEEXGU, where U = I, L or V), are believed to contribute to the removal of all magnesium binding sites but one, retaining only the metal site that coordinates the pyrophosphate of the substrate. Secondly, it is not a pyrophosphatase that substitutes at a phosphorus; instead, it hydrolyzes nucleotide sugars such as GDP-mannose to GDP and mannose, cleaving the phosphoglycosyl bond by substituting at a carbon position. GDP-mannose provides mannosyl components for cell wall synthesis and is required for the synthesis of other glycosyl donors (such as GDP-fucose and colitose) for the cell wall. The importance of GDP-sugar hydrolase activities is thus close
Probab=98.57 E-value=1.4e-07 Score=80.60 Aligned_cols=59 Identities=20% Similarity=0.217 Sum_probs=47.0
Q ss_pred eEEEEEEEEeCCceEEEEeecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHhhhhhCCCcccc
Q 021094 219 AVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSIS 283 (317)
Q Consensus 219 gVHlngyv~~dg~~~lwV~rRS~~K~t~PG~wD~~vAGgv~aGEs~~ea~~RE~~EEAGL~~~l~ 283 (317)
+|.+.+++ .++++++.||... .+||+|+.. ||++..|||+.+|++||++||+||.....
T Consensus 14 ~v~~vI~~---~~g~vLl~~R~~~--p~~g~w~lP-GG~ve~gEs~~~aa~RE~~EE~Gl~v~~~ 72 (144)
T cd03430 14 SIDLIVEN---EDGQYLLGKRTNR--PAQGYWFVP-GGRIRKNETLTEAFERIAKDELGLEFLIS 72 (144)
T ss_pred EEEEEEEe---CCCeEEEEEccCC--CCCCcEECC-CceecCCCCHHHHHHHHHHHHHCCCcccc
Confidence 44554443 2347999988753 489999954 99999999999999999999999987654
No 39
>cd02883 Nudix_Hydrolase Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzy
Probab=98.55 E-value=3.1e-07 Score=72.03 Aligned_cols=46 Identities=26% Similarity=0.471 Sum_probs=42.0
Q ss_pred eEEEEeecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHhhhhhCCCcc
Q 021094 232 KFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRS 281 (317)
Q Consensus 232 ~~lwV~rRS~~K~t~PG~wD~~vAGgv~aGEs~~ea~~RE~~EEAGL~~~ 281 (317)
+++++.||+.. ++|+|+. .+|++..||++.++++||++||+||...
T Consensus 12 ~~ill~kr~~~---~~~~~~~-p~G~~~~~e~~~~~a~RE~~EE~Gl~~~ 57 (123)
T cd02883 12 GRVLLVRRADS---PGGLWEL-PGGGVEPGETLEEAAIREVREETGLDVD 57 (123)
T ss_pred CCEEEEEEcCC---CCCeEeC-CcccccCCCCHHHHHHHHHHHhhCccce
Confidence 57999999988 8999995 5899999999999999999999999775
No 40
>cd03424 ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate. Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirem
Probab=98.55 E-value=1.7e-07 Score=77.82 Aligned_cols=63 Identities=19% Similarity=0.150 Sum_probs=48.1
Q ss_pred ceeEEEEEEEEeCCceEEEEeecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHhhhhhCCCccccc
Q 021094 217 AYAVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISN 284 (317)
Q Consensus 217 ~~gVHlngyv~~dg~~~lwV~rRS~~K~t~PG~wD~~vAGgv~aGEs~~ea~~RE~~EEAGL~~~l~~ 284 (317)
+.+|.+.++.. ++++++.||...+ ..+++|+. .+|++..||++.+|++||+.||+||......
T Consensus 2 ~~~v~v~~~~~---~~~iLl~~~~~~~-~~~~~w~~-PgG~ve~gEs~~~aa~RE~~EE~Gl~~~~~~ 64 (137)
T cd03424 2 PDAVAVLPYDD---DGKVVLVRQYRPP-VGGWLLEL-PAGLIDPGEDPEEAARRELEEETGYEAGDLE 64 (137)
T ss_pred CCEEEEEEEcC---CCeEEEEEeeecC-CCCEEEEe-CCccCCCCCCHHHHHHHHHHHHHCCCccceE
Confidence 45666766663 2467776664443 47889995 5899999999999999999999999886433
No 41
>cd04700 DR1025_like DR1025 from Deinococcus radiodurans, a member of the Nudix hydrolase superfamily, show nucleoside triphosphatase and dinucleoside polyphosphate pyrophosphatase activities. Like other enzymes belonging to this superfamily, it requires a divalent cation, in this case Mg2+, for its activity. It also contains a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. In general, substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is us
Probab=98.53 E-value=6.5e-07 Score=76.09 Aligned_cols=55 Identities=15% Similarity=0.181 Sum_probs=42.6
Q ss_pred EEEEeecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHhhhhhCCCccccccceEEE
Q 021094 233 FLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRYTSFT 290 (317)
Q Consensus 233 ~lwV~rRS~~K~t~PG~wD~~vAGgv~aGEs~~ea~~RE~~EEAGL~~~l~~~~~SY~ 290 (317)
++++.||... ..+|.|+.. +|++.+||++.+|++||++||+||.....+...+|.
T Consensus 26 ~vLL~~r~~~--~~~~~w~lP-gG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~~~~~ 80 (142)
T cd04700 26 DVLLVQEKGG--PKKGLWHIP-SGAVEDGEFPQDAAVREACEETGLRVRPVKFLGTYL 80 (142)
T ss_pred cEEEEEEcCC--CCCCeEECC-ceecCCCCCHHHHHHHHHHHhhCceeeccEEEEEEE
Confidence 4666565433 358999876 899999999999999999999999877665443443
No 42
>cd04677 Nudix_Hydrolase_18 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.53 E-value=1.4e-07 Score=77.30 Aligned_cols=59 Identities=24% Similarity=0.251 Sum_probs=46.3
Q ss_pred eeEEEEEEEEeCCceEEEEeecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHhhhhhCCCcccccc
Q 021094 218 YAVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNR 285 (317)
Q Consensus 218 ~gVHlngyv~~dg~~~lwV~rRS~~K~t~PG~wD~~vAGgv~aGEs~~ea~~RE~~EEAGL~~~l~~~ 285 (317)
.++.+.++.. ++++++++|+.. |+|+. .+|++..||++.+|++||++||+||.......
T Consensus 8 ~~~~~~v~~~---~~~vLL~~r~~~-----~~w~~-PgG~v~~gEt~~~aa~REl~EE~Gi~~~~~~~ 66 (132)
T cd04677 8 VGAGVILLNE---QGEVLLQKRSDT-----GDWGL-PGGAMELGESLEETARRELKEETGLEVEELEL 66 (132)
T ss_pred cceEEEEEeC---CCCEEEEEecCC-----CcEEC-CeeecCCCCCHHHHHHHHHHHHhCCeeeeeEE
Confidence 3556655542 247899999754 88986 58999999999999999999999998765443
No 43
>cd04695 Nudix_Hydrolase_36 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.53 E-value=2.2e-07 Score=77.24 Aligned_cols=51 Identities=24% Similarity=0.313 Sum_probs=43.9
Q ss_pred CCceEEEEeecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHhhhhhCCCcccc
Q 021094 229 DGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSIS 283 (317)
Q Consensus 229 dg~~~lwV~rRS~~K~t~PG~wD~~vAGgv~aGEs~~ea~~RE~~EEAGL~~~l~ 283 (317)
+++.++++.||+.. ++|+|. ..+|++..|||+.+|++||++||+||.....
T Consensus 11 ~~~~~vLl~~r~~~---~~g~w~-~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~ 61 (131)
T cd04695 11 DKETKVLLLKRVKT---LGGFWC-HVAGGVEAGETAWQAALRELKEETGISLPEL 61 (131)
T ss_pred CCCCEEEEEEecCC---CCCcEE-CCcccccCCCCHHHHHHHHHHHHhCCCcccc
Confidence 45568999999866 899997 5799999999999999999999999986533
No 44
>PRK15434 GDP-mannose mannosyl hydrolase NudD; Provisional
Probab=98.50 E-value=2.4e-07 Score=81.49 Aligned_cols=50 Identities=18% Similarity=0.277 Sum_probs=42.7
Q ss_pred CceEEEEeecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHhhhhhCCCccc
Q 021094 230 GQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSI 282 (317)
Q Consensus 230 g~~~lwV~rRS~~K~t~PG~wD~~vAGgv~aGEs~~ea~~RE~~EEAGL~~~l 282 (317)
+.+++++.||+. + .++|+|.. -||++..|||+.+|++||++||+||...+
T Consensus 27 ~~g~VLL~kR~~-~-~~~g~W~l-PGG~VE~GEt~~~Aa~REl~EEtGl~v~~ 76 (159)
T PRK15434 27 SRGEFLLGKRTN-R-PAQGYWFV-PGGRVQKDETLEAAFERLTMAELGLRLPI 76 (159)
T ss_pred CCCEEEEEEccC-C-CCCCcEEC-CceecCCCCCHHHHHHHHHHHHHCCcccc
Confidence 345899999984 3 47899995 59999999999999999999999997643
No 45
>PRK10546 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=98.48 E-value=9.7e-07 Score=72.91 Aligned_cols=50 Identities=22% Similarity=0.418 Sum_probs=43.3
Q ss_pred eEEEEeecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHhhhhhCCCcccc
Q 021094 232 KFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSIS 283 (317)
Q Consensus 232 ~~lwV~rRS~~K~t~PG~wD~~vAGgv~aGEs~~ea~~RE~~EEAGL~~~l~ 283 (317)
+++++.||...+ .++|+|... +|.+..||++.++++||+.||+|+.....
T Consensus 15 ~~vLL~~R~~~~-~~~g~w~~P-gG~ve~gE~~~~a~~RE~~EE~Gl~~~~~ 64 (135)
T PRK10546 15 GKILLAQRPAHS-DQAGLWEFA-GGKVEPGESQPQALIRELREELGIEATVG 64 (135)
T ss_pred CEEEEEEccCCC-CCCCcEECC-cccCCCCCCHHHHHHHHHHHHHCCccccc
Confidence 479999997664 589999855 99999999999999999999999986653
No 46
>cd04671 Nudix_Hydrolase_13 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.47 E-value=3.1e-07 Score=76.51 Aligned_cols=51 Identities=18% Similarity=0.247 Sum_probs=43.7
Q ss_pred ceEEEEeecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHhhhhhCCCccccc
Q 021094 231 QKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISN 284 (317)
Q Consensus 231 ~~~lwV~rRS~~K~t~PG~wD~~vAGgv~aGEs~~ea~~RE~~EEAGL~~~l~~ 284 (317)
++++++.||.+. .++|+|... +|++..||++.+|++||++||+|+.....+
T Consensus 11 ~~~vLl~~r~~~--~~~~~w~lP-gG~ve~gEt~~~aa~REl~EEtG~~~~~~~ 61 (123)
T cd04671 11 QGEVLLIQEAKR--SCRGKWYLP-AGRMEPGETIEEAVKREVKEETGLDCEPTT 61 (123)
T ss_pred CCEEEEEEecCC--CCCCeEECc-eeecCCCCCHHHHHHHHHHHHHCCeeecce
Confidence 357999999753 469999966 899999999999999999999999876554
No 47
>cd04676 Nudix_Hydrolase_17 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.47 E-value=3e-07 Score=74.06 Aligned_cols=48 Identities=21% Similarity=0.449 Sum_probs=41.3
Q ss_pred CceEEEEeecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHhhhhhCCCcccc
Q 021094 230 GQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSIS 283 (317)
Q Consensus 230 g~~~lwV~rRS~~K~t~PG~wD~~vAGgv~aGEs~~ea~~RE~~EEAGL~~~l~ 283 (317)
+++++++.||+.. |+|+. .+|++..||++.+|++||++||+||.....
T Consensus 12 ~~~~vLl~~r~~~-----~~w~l-PgG~v~~~E~~~~aa~REl~EE~Gl~~~~~ 59 (129)
T cd04676 12 DEGRVLLIRRSDN-----GLWAL-PGGAVEPGESPADTAVREVREETGLDVEVT 59 (129)
T ss_pred CCCeEEEEEecCC-----CcEEC-CeeccCCCCCHHHHHHHHHHHHhCceeEee
Confidence 3357999999875 99996 589999999999999999999999976543
No 48
>cd03428 Ap4A_hydrolase_human_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and
Probab=98.47 E-value=4.5e-07 Score=74.27 Aligned_cols=55 Identities=24% Similarity=0.175 Sum_probs=44.5
Q ss_pred EEEEeCCceEEEEeecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHhhhhhCCCcccccc
Q 021094 224 GYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNR 285 (317)
Q Consensus 224 gyv~~dg~~~lwV~rRS~~K~t~PG~wD~~vAGgv~aGEs~~ea~~RE~~EEAGL~~~l~~~ 285 (317)
+|..++++.++++.||+. |.|+.. +|++..||++.+|++||++||+||.......
T Consensus 9 i~~~~~~~~~vLl~~~~~------~~w~~P-gG~ve~gEs~~~aa~REl~EEtGl~~~~~~~ 63 (130)
T cd03428 9 IYRRLNNEIEYLLLQASY------GHWDFP-KGHVEPGEDDLEAALRETEEETGITAEQLFI 63 (130)
T ss_pred EEEecCCCceEEEEEccC------CcCcCC-cCCCCCCCCHHHHHHHHHHHHHCCChhhhhh
Confidence 344445556788888876 889864 9999999999999999999999998776554
No 49
>cd04685 Nudix_Hydrolase_26 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.46 E-value=1.4e-06 Score=73.86 Aligned_cols=63 Identities=19% Similarity=0.184 Sum_probs=51.6
Q ss_pred eeEEEEEEEEeCCceEEEEeecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHhhhhhCCCc-cccc
Q 021094 218 YAVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPR-SISN 284 (317)
Q Consensus 218 ~gVHlngyv~~dg~~~lwV~rRS~~K~t~PG~wD~~vAGgv~aGEs~~ea~~RE~~EEAGL~~-~l~~ 284 (317)
+++++.+++. +++++++||...+..+++.|+. .+|++..||++.+|+.||+.||+|+.. ++..
T Consensus 1 ~~~~~~i~~~---~g~vLl~r~~~~~~~~~~~w~~-PgG~ve~gE~~~~a~~Re~~EE~G~~~~~~~~ 64 (133)
T cd04685 1 RAARVVLLDP---DDRVLLLRGDDPDSPGPDWWFT-PGGGVEPGESPEQAARRELREETGITVADLGP 64 (133)
T ss_pred CeEEEEEEcC---CCeEEEEEEeCCCCCCCCEEEC-CcCCCCCCCCHHHHHHHHHHHHHCCccccccc
Confidence 3567777764 3479999988876678899996 689999999999999999999999987 4433
No 50
>cd03674 Nudix_Hydrolase_1 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamil
Probab=98.44 E-value=5.3e-07 Score=75.92 Aligned_cols=57 Identities=16% Similarity=0.136 Sum_probs=43.4
Q ss_pred ceeEEEEEEEEeCCceEEEEeecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHhhhhhCCCcc
Q 021094 217 AYAVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRS 281 (317)
Q Consensus 217 ~~gVHlngyv~~dg~~~lwV~rRS~~K~t~PG~wD~~vAGgv~aGEs~~ea~~RE~~EEAGL~~~ 281 (317)
|.++++.+++. .+.++++.||+. .|.|. +.||++.+||++.+|++||++||+||...
T Consensus 2 ~~~~~~~v~~~--~~~~vLLv~r~~-----~~~w~-lPgG~ve~gE~~~~aa~REl~EEtGl~~~ 58 (138)
T cd03674 2 HFTASAFVVNP--DRGKVLLTHHRK-----LGSWL-QPGGHIDPDESLLEAALRELREETGIELL 58 (138)
T ss_pred cEEEEEEEEeC--CCCeEEEEEEcC-----CCcEE-CCceecCCCCCHHHHHHHHHHHHHCCCcc
Confidence 34566665653 224677877754 47885 47899999999999999999999999754
No 51
>KOG0142 consensus Isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.43 E-value=1.7e-07 Score=85.90 Aligned_cols=93 Identities=15% Similarity=0.118 Sum_probs=74.8
Q ss_pred CCeeEeeeCCCCceeEEEecccCC-----cCCccceeEEEEEEEEeCCceEEEEeecCCCCCCCCCCcccccccCCCC--
Q 021094 188 NELYPVASTFGSPIFFSLDRAAAP-----YFGIKAYAVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLPH-- 260 (317)
Q Consensus 188 ~E~~~V~~~~g~~~l~~ieRaa~~-----~fGl~~~gVHlngyv~~dg~~~lwV~rRS~~K~t~PG~wD~~vAGgv~a-- 260 (317)
+|.+-++|.+. .+++.--...++ ..|+.|++.++..|+. +.++++||||..|-||||.|.|++++|...
T Consensus 19 ~e~ci~VDenD-~~IG~~tk~~cHl~eni~kglLHRaFSVFlFns---~~~lLlQqRS~~KitFP~~~TNtccSHPL~~~ 94 (225)
T KOG0142|consen 19 AENCILVDEND-NVIGAGTKKNCHLMENIEKGLLHRAFSVFLFNS---KNELLLQQRSDEKITFPGLWTNTCCSHPLYNP 94 (225)
T ss_pred hhheEeecccc-ccccchhhhhhhcchhHHhhhhhheeeEEEecC---cchHHHhhhccccccccchhhhhhhcCcCCCh
Confidence 34555677763 444544444455 6789999999999974 457999999999999999999999999872
Q ss_pred -------CCCHHHHHHHHhhhhhCCCccccc
Q 021094 261 -------GIACGENIIKECEEEAGIPRSISN 284 (317)
Q Consensus 261 -------GEs~~ea~~RE~~EEAGL~~~l~~ 284 (317)
++.+..||+|-+.-|+|||.+-+.
T Consensus 95 ~el~~~d~lGVr~AAqRkL~~ELGIp~e~v~ 125 (225)
T KOG0142|consen 95 GELEENDALGVRRAAQRKLKAELGIPLEEVP 125 (225)
T ss_pred hhhccCchHHHHHHHHHHHHHhhCCCccccC
Confidence 457888999999999999988776
No 52
>TIGR00586 mutt mutator mutT protein. All proteins in this family for which functions are known are involved in repairing oxidative damage to dGTP (they are 8-oxo-dGTPases). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.41 E-value=1.5e-06 Score=70.78 Aligned_cols=53 Identities=26% Similarity=0.453 Sum_probs=44.9
Q ss_pred CCceEEEEeecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHhhhhhCCCcccc
Q 021094 229 DGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSIS 283 (317)
Q Consensus 229 dg~~~lwV~rRS~~K~t~PG~wD~~vAGgv~aGEs~~ea~~RE~~EEAGL~~~l~ 283 (317)
+++++++++||... ..+.|+|+.. +|++..||++.++++||+.||+|+.....
T Consensus 13 ~~~~~vLl~~R~~~-~~~~g~w~~P-gg~ve~ge~~~~~~~RE~~EE~g~~~~~~ 65 (128)
T TIGR00586 13 NENGEIIITRRADG-HMFAKLLEFP-GGKEEGGETPEQAVVRELEEEIGIPQHFS 65 (128)
T ss_pred CCCCEEEEEEEeCC-CCCCCeEECC-CcccCCCCCHHHHHHHHHHHHHCCcceee
Confidence 44457999999765 5789999965 89999999999999999999999986544
No 53
>cd04689 Nudix_Hydrolase_30 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate sp
Probab=98.41 E-value=1.4e-06 Score=71.32 Aligned_cols=46 Identities=17% Similarity=0.229 Sum_probs=37.4
Q ss_pred EEEEeecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHhhhhhCCCccccc
Q 021094 233 FLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISN 284 (317)
Q Consensus 233 ~lwV~rRS~~K~t~PG~wD~~vAGgv~aGEs~~ea~~RE~~EEAGL~~~l~~ 284 (317)
++++.||.. .|+|.. .||++..||++.+|++||++||+||......
T Consensus 13 ~vLlv~~~~-----~~~~~l-PGG~ve~gEt~~~aa~REl~EEtGl~~~~~~ 58 (125)
T cd04689 13 KVLLARVIG-----QPHYFL-PGGHVEPGETAENALRRELQEELGVAVSDGR 58 (125)
T ss_pred EEEEEEecC-----CCCEEC-CCCcCCCCCCHHHHHHHHHHHHhCceeeccE
Confidence 677777743 257875 4899999999999999999999999765443
No 54
>cd03429 NADH_pyrophosphatase NADH pyrophosphatase, a member of the Nudix hydrolase superfamily, catalyzes the cleavage of NADH into reduced nicotinamide mononucleotide (NMNH) and AMP. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity. Members of this family are also recognized by the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. A block of 8 conserved amino acids downstream of the nudix motif is thought to give NADH pyrophosphatase its specificity for NADH. NADH pyrophosphatase forms a dimer.
Probab=98.36 E-value=7.6e-07 Score=74.57 Aligned_cols=50 Identities=24% Similarity=0.359 Sum_probs=41.0
Q ss_pred ceEEEEeecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHhhhhhCCCccccc
Q 021094 231 QKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISN 284 (317)
Q Consensus 231 ~~~lwV~rRS~~K~t~PG~wD~~vAGgv~aGEs~~ea~~RE~~EEAGL~~~l~~ 284 (317)
+.++++.||+.. -+|+|+ +.||++..||++.+|++||++||+||......
T Consensus 11 ~~~vLL~~r~~~---~~~~w~-lPgG~ie~gEt~~~aA~REl~EEtGl~~~~~~ 60 (131)
T cd03429 11 GDRILLARQPRF---PPGMYS-LLAGFVEPGESLEEAVRREVKEEVGIRVKNIR 60 (131)
T ss_pred CCEEEEEEecCC---CCCcCc-CCcccccCCCCHHHHHhhhhhhccCceeeeeE
Confidence 357888888642 278998 56999999999999999999999999875443
No 55
>PRK00714 RNA pyrophosphohydrolase; Reviewed
Probab=98.34 E-value=1.1e-06 Score=76.35 Aligned_cols=57 Identities=19% Similarity=0.185 Sum_probs=45.9
Q ss_pred eEEEEEEEEeCCceEEEEeecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHhhhhhCCCcccc
Q 021094 219 AVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSIS 283 (317)
Q Consensus 219 gVHlngyv~~dg~~~lwV~rRS~~K~t~PG~wD~~vAGgv~aGEs~~ea~~RE~~EEAGL~~~l~ 283 (317)
+|.+.+++. ++++++.||+. .||.|+.. +|++..||++.+|+.||+.||+|+.....
T Consensus 10 ~v~~~i~~~---~g~vLL~~r~~----~~~~w~~P-~G~~~~gE~~~~aa~REl~EEtG~~~~~~ 66 (156)
T PRK00714 10 NVGIILLNR---QGQVFWGRRIG----QGHSWQFP-QGGIDPGETPEQAMYRELYEEVGLRPEDV 66 (156)
T ss_pred eEEEEEEec---CCEEEEEEEcC----CCCeEECC-cccCCCCcCHHHHHHHHHHHHhCCCccce
Confidence 556655553 34799999984 26999976 89999999999999999999999986543
No 56
>cd03675 Nudix_Hydrolase_2 Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability,
Probab=98.34 E-value=1.8e-06 Score=71.37 Aligned_cols=54 Identities=22% Similarity=0.220 Sum_probs=42.2
Q ss_pred EEEEeCCceEEEEeecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHhhhhhCCCcccc
Q 021094 224 GYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSIS 283 (317)
Q Consensus 224 gyv~~dg~~~lwV~rRS~~K~t~PG~wD~~vAGgv~aGEs~~ea~~RE~~EEAGL~~~l~ 283 (317)
+++..++ ++++-||... .+++|.. .||++..||++.+|+.||++||+||.....
T Consensus 5 ~ii~~~~--~vLlv~r~~~---~~~~w~~-PgG~ve~gEs~~~aa~REl~EEtGl~~~~~ 58 (134)
T cd03675 5 AVVERDG--RFLLVEEETD---GGLVFNQ-PAGHLEPGESLIEAAVRETLEETGWHVEPT 58 (134)
T ss_pred EEEEECC--EEEEEEEccC---CCceEEC-CCccCCCCCCHHHHHHHHHHHHHCcccccc
Confidence 3444343 6888787554 6688975 599999999999999999999999986543
No 57
>cd04669 Nudix_Hydrolase_11 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.29 E-value=1.7e-06 Score=71.31 Aligned_cols=49 Identities=20% Similarity=0.276 Sum_probs=41.0
Q ss_pred eEEEEeecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHhhhhhCCCccccc
Q 021094 232 KFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISN 284 (317)
Q Consensus 232 ~~lwV~rRS~~K~t~PG~wD~~vAGgv~aGEs~~ea~~RE~~EEAGL~~~l~~ 284 (317)
+++++.||.... .++|.. -||++..||++.+|++||+.||+||...+.+
T Consensus 12 ~~vLL~~r~~~~---~~~w~l-PGG~ve~gEs~~~a~~REl~EEtGl~~~~~~ 60 (121)
T cd04669 12 GEILLIRRIKPG---KTYYVF-PGGGIEEGETPEEAAKREALEELGLDVRVEE 60 (121)
T ss_pred CEEEEEEEecCC---CCcEEC-CceeccCCCCHHHHHHHHHHHhhCeeEeeee
Confidence 478888886542 588985 5999999999999999999999999886644
No 58
>cd04687 Nudix_Hydrolase_28 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.26 E-value=2.2e-06 Score=70.57 Aligned_cols=47 Identities=26% Similarity=0.315 Sum_probs=39.2
Q ss_pred EEEEeecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHhhhhhCCCcccc
Q 021094 233 FLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSIS 283 (317)
Q Consensus 233 ~lwV~rRS~~K~t~PG~wD~~vAGgv~aGEs~~ea~~RE~~EEAGL~~~l~ 283 (317)
++++.||... .++.|+. .||++..||++.+|++||+.||+||.....
T Consensus 13 ~vLl~~r~~~---~~~~~~l-PGG~ve~gEt~~~aa~RE~~EEtGl~v~~~ 59 (128)
T cd04687 13 KILLIKHHDD---GGVWYIL-PGGGQEPGETLEDAAHRECKEEIGIDVEIG 59 (128)
T ss_pred EEEEEEEEcC---CCCeEEC-CCcccCCCCCHHHHHHHHHHHHHCCccccC
Confidence 7888888643 3477875 599999999999999999999999987653
No 59
>PRK10707 putative NUDIX hydrolase; Provisional
Probab=98.26 E-value=3.7e-06 Score=75.93 Aligned_cols=58 Identities=22% Similarity=0.266 Sum_probs=48.0
Q ss_pred CceEEEEeecCCCCCCCCCCcccccccCCCCC-CCHHHHHHHHhhhhhCCCccccccceE
Q 021094 230 GQKFLWIGKRSQVKSTYPGMLDILAGGGLPHG-IACGENIIKECEEEAGIPRSISNRYTS 288 (317)
Q Consensus 230 g~~~lwV~rRS~~K~t~PG~wD~~vAGgv~aG-Es~~ea~~RE~~EEAGL~~~l~~~~~S 288 (317)
++..+++.||+.+-+.++|.|. +.||.+.+| +++.+||+||++||+|+..+......+
T Consensus 42 ~~~~vLl~~R~~~~r~~~G~~~-~PGG~~e~~de~~~~tA~REl~EEtGl~~~~~~~lg~ 100 (190)
T PRK10707 42 PQPTLLLTQRSIHLRKHAGQVA-FPGGAVDPTDASLIATALREAQEEVAIPPSAVEVIGV 100 (190)
T ss_pred CCCEEEEEEeCCcccCCCCcEE-cCCcccCCCcccHHHHHHHHHHHHHCCCccceEEEEE
Confidence 3458999999998778999995 779999975 679999999999999998766554333
No 60
>cd04662 Nudix_Hydrolase_5 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=98.25 E-value=2.5e-06 Score=73.00 Aligned_cols=56 Identities=20% Similarity=0.145 Sum_probs=45.2
Q ss_pred EEEeCCceEEEEeecCCC--CCCCCCCcccccccCCCCCCCHHHHHHHHhhhhhCCCcc
Q 021094 225 YVEKDGQKFLWIGKRSQV--KSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRS 281 (317)
Q Consensus 225 yv~~dg~~~lwV~rRS~~--K~t~PG~wD~~vAGgv~aGEs~~ea~~RE~~EEAGL~~~ 281 (317)
|..++++.++++.+|... +...+|+|+.. +|++..||++.++++||++||+|+..+
T Consensus 8 ~~~~~~~~~vlL~~~~~~~~~~~~~~~W~lP-gG~ie~~E~~~~aA~REl~EEtGl~~~ 65 (126)
T cd04662 8 YRFRDGRIEVLLVHPGGPFWANKDLGAWSIP-KGEYTEGEDPLLAAKREFSEETGFCVD 65 (126)
T ss_pred EEEcCCcEEEEEEEccCccccCCCCCEEECC-cccCCCCcCHHHHHHHHHHHHhCCcce
Confidence 443355667888887544 44678999875 999999999999999999999999765
No 61
>cd04666 Nudix_Hydrolase_9 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=98.24 E-value=4.4e-06 Score=69.72 Aligned_cols=58 Identities=21% Similarity=0.227 Sum_probs=43.2
Q ss_pred CCceEEEEeecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHhhhhhCCCcccc-ccceEEEEe
Q 021094 229 DGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSIS-NRYTSFTEL 292 (317)
Q Consensus 229 dg~~~lwV~rRS~~K~t~PG~wD~~vAGgv~aGEs~~ea~~RE~~EEAGL~~~l~-~~~~SY~~~ 292 (317)
++..++++-+|... |.|+ +.+|++..||++.+|++||+.||+||..... +...+|.+.
T Consensus 12 ~~~~~vLLv~~~~~-----~~w~-~PgG~ve~~E~~~~aa~RE~~EEtG~~~~~~~~~l~~~~~~ 70 (122)
T cd04666 12 GGEVEVLLVTSRRT-----GRWI-VPKGGPEKDESPAEAAAREAWEEAGVRGKIGKRPLGRFEYR 70 (122)
T ss_pred CCceEEEEEEecCC-----CeEE-CCCCCcCCCCCHHHHHHHHHHHHhCCcccccceEEEEEEee
Confidence 33456666665432 8998 5699999999999999999999999987665 443355443
No 62
>cd04511 Nudix_Hydrolase_4 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specifici
Probab=98.22 E-value=2.4e-06 Score=70.95 Aligned_cols=49 Identities=20% Similarity=0.266 Sum_probs=41.9
Q ss_pred eEEEEeecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHhhhhhCCCcccc
Q 021094 232 KFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSIS 283 (317)
Q Consensus 232 ~~lwV~rRS~~K~t~PG~wD~~vAGgv~aGEs~~ea~~RE~~EEAGL~~~l~ 283 (317)
+++++.||... ..+|.|+.. +|++..||++.++++||++||+|+.....
T Consensus 24 ~~vLL~kr~~~--~~~g~w~lP-gG~ve~gE~~~~a~~REl~EEtGl~~~~~ 72 (130)
T cd04511 24 GKVLLCRRAIE--PRHGFWTLP-AGFMENGETTEQGALRETWEEAGARVEID 72 (130)
T ss_pred CEEEEEEecCC--CCCCeEECC-cccccCCCCHHHHHHHHHHHHhCCEEEee
Confidence 36999998764 378999854 99999999999999999999999987554
No 63
>PLN02325 nudix hydrolase
Probab=98.21 E-value=4e-06 Score=71.81 Aligned_cols=50 Identities=22% Similarity=0.301 Sum_probs=41.9
Q ss_pred EEEEeecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHhhhhhCCCcccccc
Q 021094 233 FLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNR 285 (317)
Q Consensus 233 ~lwV~rRS~~K~t~PG~wD~~vAGgv~aGEs~~ea~~RE~~EEAGL~~~l~~~ 285 (317)
+++++||+... .-|+|... +|++..||++.+|++||++||+||.....+.
T Consensus 21 ~vLL~rr~~~~--~~g~W~lP-GG~ve~gEs~~~aa~REv~EEtGl~v~~~~~ 70 (144)
T PLN02325 21 SVLLGRRRSSI--GDSTFALP-GGHLEFGESFEECAAREVKEETGLEIEKIEL 70 (144)
T ss_pred EEEEEEecCCC--CCCeEECC-ceeCCCCCCHHHHHHHHHHHHHCCCCcceEE
Confidence 79999997642 23789865 8999999999999999999999998765543
No 64
>cd04672 Nudix_Hydrolase_14 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.18 E-value=3.8e-06 Score=68.89 Aligned_cols=44 Identities=25% Similarity=0.480 Sum_probs=36.8
Q ss_pred EEEEeecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHhhhhhCCCccc
Q 021094 233 FLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSI 282 (317)
Q Consensus 233 ~lwV~rRS~~K~t~PG~wD~~vAGgv~aGEs~~ea~~RE~~EEAGL~~~l 282 (317)
++++.||.. .|+|+.. ||++.+||++.+|++||++||+|+...+
T Consensus 14 ~vLL~~~~~-----~~~w~~P-GG~ve~gEs~~~aa~REl~EEtG~~~~~ 57 (123)
T cd04672 14 KILLVREKS-----DGLWSLP-GGWADVGLSPAENVVKEVKEETGLDVKV 57 (123)
T ss_pred EEEEEEEcC-----CCcEeCC-ccccCCCCCHHHHHHHHHHHHhCCeeeE
Confidence 566666643 5899865 8999999999999999999999997644
No 65
>cd04690 Nudix_Hydrolase_31 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.17 E-value=6.3e-06 Score=66.42 Aligned_cols=44 Identities=20% Similarity=0.313 Sum_probs=36.2
Q ss_pred EEEEeecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHhhhhhCCCccc
Q 021094 233 FLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSI 282 (317)
Q Consensus 233 ~lwV~rRS~~K~t~PG~wD~~vAGgv~aGEs~~ea~~RE~~EEAGL~~~l 282 (317)
++++.||.. .|+|. +.+|++..||++.+|++||++||+||....
T Consensus 13 ~vLl~~r~~-----~~~w~-~PgG~ve~~Es~~~aa~REl~EEtGl~~~~ 56 (118)
T cd04690 13 RVLLVRKRG-----TDVFY-LPGGKIEAGETPLQALIRELSEELGLDLDP 56 (118)
T ss_pred eEEEEEECC-----CCcEE-CCCCccCCCCCHHHHHHHHHHHHHCCccCh
Confidence 677767643 36777 458999999999999999999999997655
No 66
>PRK00241 nudC NADH pyrophosphatase; Reviewed
Probab=98.14 E-value=4.2e-06 Score=78.92 Aligned_cols=56 Identities=18% Similarity=0.254 Sum_probs=44.1
Q ss_pred EEEEEeCCceEEEEeecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHhhhhhCCCccccc
Q 021094 223 NGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISN 284 (317)
Q Consensus 223 ngyv~~dg~~~lwV~rRS~~K~t~PG~wD~~vAGgv~aGEs~~ea~~RE~~EEAGL~~~l~~ 284 (317)
.+.+.+ + .++++.||...+ +|+|. +.||++.+|||+++|++||++||+||.....+
T Consensus 136 iv~V~~-~-~~iLL~rr~~~~---~g~ws-lPgG~vE~GEs~eeAa~REv~EEtGl~v~~~~ 191 (256)
T PRK00241 136 IVAVRR-G-DEILLARHPRHR---NGVYT-VLAGFVEVGETLEQCVAREVMEESGIKVKNLR 191 (256)
T ss_pred EEEEEe-C-CEEEEEEccCCC---CCcEe-CcccCCCCCCCHHHHhhhhhhhccCceeeeeE
Confidence 344443 3 479999886543 79998 66999999999999999999999999765443
No 67
>cd03672 Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex. Decapping is a key step in both general and nonsense-mediated 5'-3' mRNA-decay pathways. Dcp2p contains an all-alpha helical N-terminal domain and a C-terminal domain which has the Nudix fold. While decapping is not dependent on the N-terminus of Dcp2p, it does affect its efficiency. Dcp1p binds the N-terminal domain of Dcp2p stimulating the decapping activity of Dcp2p. Decapping permits the degradation of the transcript and is a site of numerous control inputs. It is responsible for nonsense-mediated decay as well as AU-rich element (ARE)-mediated decay. In addition, it may also play a role in the levels of mRNA. Enzymes belonging to the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V).
Probab=98.14 E-value=5.4e-06 Score=71.33 Aligned_cols=45 Identities=18% Similarity=0.080 Sum_probs=37.4
Q ss_pred eEEEEeecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHhhhhhCCCccc
Q 021094 232 KFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSI 282 (317)
Q Consensus 232 ~~lwV~rRS~~K~t~PG~wD~~vAGgv~aGEs~~ea~~RE~~EEAGL~~~l 282 (317)
+++++.||. .++.|+.. +|++..||++.+||+||++||+||....
T Consensus 14 ~~vLLvr~~-----~~~~W~lP-GG~ve~gEs~~~AA~REl~EETGl~v~~ 58 (145)
T cd03672 14 DKVLLVKGW-----KSKSWSFP-KGKINKDEDDHDCAIREVYEETGFDISK 58 (145)
T ss_pred CEEEEEEec-----CCCCEECC-CccCCCCcCHHHHHHHHHHHhhCcccee
Confidence 468887774 33589865 9999999999999999999999997654
No 68
>cd04667 Nudix_Hydrolase_10 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.12 E-value=4.2e-06 Score=67.52 Aligned_cols=46 Identities=17% Similarity=0.174 Sum_probs=38.7
Q ss_pred eEEEEeecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHhhhhhCCCccccc
Q 021094 232 KFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISN 284 (317)
Q Consensus 232 ~~lwV~rRS~~K~t~PG~wD~~vAGgv~aGEs~~ea~~RE~~EEAGL~~~l~~ 284 (317)
.++++.||+. |+|+. .+|++..||++.+|+.||+.||+||......
T Consensus 11 ~~vLlv~r~~------~~w~~-PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~ 56 (112)
T cd04667 11 GRVLLVRKSG------SRWAL-PGGKIEPGETPLQAARRELQEETGLQGLDLL 56 (112)
T ss_pred CEEEEEEcCC------CcEeC-CCCcCCCCCCHHHHHHHHHHHHhCCcccceE
Confidence 3788998863 88874 5899999999999999999999999865433
No 69
>COG0494 MutT NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]
Probab=98.11 E-value=1.7e-05 Score=62.62 Aligned_cols=46 Identities=24% Similarity=0.368 Sum_probs=40.8
Q ss_pred eEEEEeecCCCCCCCCCCcccccccCCCCCCCHHH-HHHHHhhhhhCCCccc
Q 021094 232 KFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGE-NIIKECEEEAGIPRSI 282 (317)
Q Consensus 232 ~~lwV~rRS~~K~t~PG~wD~~vAGgv~aGEs~~e-a~~RE~~EEAGL~~~l 282 (317)
.++++.+|...+ |.|+. .||++..||++.+ |++||++||+||....
T Consensus 24 ~~vl~~~~~~~~----~~~~~-PgG~ve~~e~~~~~aa~RE~~EEtGl~~~~ 70 (161)
T COG0494 24 GEVLLAQRRDDG----GLWEL-PGGKVEPGEELPEEAAARELEEETGLRVKD 70 (161)
T ss_pred CEEeEEEccccC----Cceec-CCcccCCCCchHHHHHHHHHHHHhCCeeee
Confidence 679999998887 88885 4999999999988 9999999999998774
No 70
>PRK08999 hypothetical protein; Provisional
Probab=98.10 E-value=1.3e-05 Score=75.95 Aligned_cols=61 Identities=20% Similarity=0.341 Sum_probs=47.8
Q ss_pred EEEEEEEeCCceEEEEeecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHhhhhhCCCcccc
Q 021094 221 PLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSIS 283 (317)
Q Consensus 221 Hlngyv~~dg~~~lwV~rRS~~K~t~PG~wD~~vAGgv~aGEs~~ea~~RE~~EEAGL~~~l~ 283 (317)
++.+.+..++++++++.||..+ ..++|+|+.. +|++..||++.++++||+.||+|+.....
T Consensus 6 ~~~~~vi~~~~~~vLL~kR~~~-~~~~g~w~~P-gG~ve~gE~~~~aa~RE~~EE~Gl~~~~~ 66 (312)
T PRK08999 6 HVAAGVIRDADGRILLARRPEG-KHQGGLWEFP-GGKVEPGETVEQALARELQEELGIEVTAA 66 (312)
T ss_pred EEEEEEEECCCCeEEEEEecCC-CCCCCeEECC-ccCCCCCCCHHHHHHHHHHHHhCCceecc
Confidence 3344433334457999999766 4799999965 89999999999999999999999985543
No 71
>PLN02709 nudix hydrolase
Probab=98.06 E-value=1.3e-05 Score=74.57 Aligned_cols=68 Identities=26% Similarity=0.302 Sum_probs=54.1
Q ss_pred cceeEEEEEEEEe---CCceEEEEeecCCCCCCCCCCcccccccCCCCCC-CHHHHHHHHhhhhhCCCccccc
Q 021094 216 KAYAVPLNGYVEK---DGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGI-ACGENIIKECEEEAGIPRSISN 284 (317)
Q Consensus 216 ~~~gVHlngyv~~---dg~~~lwV~rRS~~K~t~PG~wD~~vAGgv~aGE-s~~ea~~RE~~EEAGL~~~l~~ 284 (317)
+..+|-+-.+... +++.++++.||+.+.+.+||.|-.. ||.+.+|+ ++.+||+||++||+||+.+.++
T Consensus 32 r~AAVLv~l~~~~~~~~~~~~vLl~~Rs~~l~~h~GqiafP-GG~~e~~D~~~~~tAlRE~~EEiGl~~~~v~ 103 (222)
T PLN02709 32 KSSAVLVCLYQEQREDKNELRVILTKRSSTLSSHPGEVALP-GGKRDEEDKDDIATALREAREEIGLDPSLVT 103 (222)
T ss_pred CccEEEEEEeeccCCCCCceEEEEEEcCCCCCCCCCCccCC-CcccCCCCCCHHHHHHHHHHHHHCCCchheE
Confidence 4455666555431 3567899999999988899999855 89999874 6899999999999999886544
No 72
>COG1051 ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]
Probab=98.03 E-value=1.6e-05 Score=68.78 Aligned_cols=62 Identities=21% Similarity=0.318 Sum_probs=47.9
Q ss_pred eEEEEEEEEeCCceEEEEeecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHhhhhhCCCcccccc
Q 021094 219 AVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNR 285 (317)
Q Consensus 219 gVHlngyv~~dg~~~lwV~rRS~~K~t~PG~wD~~vAGgv~aGEs~~ea~~RE~~EEAGL~~~l~~~ 285 (317)
.+=+.+.+..++ ++++-||+.. -++|+|- +-||.+..|||+.+|+.||++||+||.....+.
T Consensus 10 ~~~v~~~i~~~~--~iLLvrR~~~--p~~g~Wa-lPGG~ve~GEt~eeaa~REl~EETgL~~~~~~~ 71 (145)
T COG1051 10 LVAVGALIVRNG--RILLVRRANE--PGAGYWA-LPGGFVEIGETLEEAARRELKEETGLRVRVLEL 71 (145)
T ss_pred ceeeeEEEEeCC--EEEEEEecCC--CCCCcEe-CCCccCCCCCCHHHHHHHHHHHHhCCcccceeE
Confidence 344455555444 7888888765 5779998 559999999999999999999999998555443
No 73
>cd04686 Nudix_Hydrolase_27 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.02 E-value=4.4e-05 Score=63.80 Aligned_cols=42 Identities=26% Similarity=0.403 Sum_probs=35.3
Q ss_pred EEEEeecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHhhhhhCCCc
Q 021094 233 FLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPR 280 (317)
Q Consensus 233 ~lwV~rRS~~K~t~PG~wD~~vAGgv~aGEs~~ea~~RE~~EEAGL~~ 280 (317)
++++.||.. .|+|+ +.+|++..||++.+|++||+.||+|+..
T Consensus 12 ~vLLv~~~~-----~~~w~-lPgG~ve~gEt~~~aa~REl~EEtGl~~ 53 (131)
T cd04686 12 KILLLYTKR-----YGDYK-FPGGGVEKGEDHIEGLIRELQEETGATN 53 (131)
T ss_pred EEEEEEEcC-----CCcEE-CccccCCCCCCHHHHHHHHHHHHHCCcc
Confidence 577776643 25787 5799999999999999999999999975
No 74
>cd04661 MRP_L46 Mitochondrial ribosomal protein L46 (MRP L46) is a component of the large subunit (39S) of the mammalian mitochondrial ribosome and a member of the Nudix hydrolase superfamily. MRPs are thought to be involved in the maintenance of the mitochondrial DNA. In general, members of the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for activity and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. MRP L46 appears to contain a modified nudix motif.
Probab=98.00 E-value=7.6e-06 Score=68.73 Aligned_cols=47 Identities=9% Similarity=0.020 Sum_probs=38.7
Q ss_pred eEEEEeecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHhhhhhCCCccc
Q 021094 232 KFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSI 282 (317)
Q Consensus 232 ~~lwV~rRS~~K~t~PG~wD~~vAGgv~aGEs~~ea~~RE~~EEAGL~~~l 282 (317)
.++++-||+..+ .|+|... +|++.+|||+.+||+||+.||+|+....
T Consensus 13 ~~~Llvk~~~~~---~g~W~fP-gG~ve~gEt~~eaa~REl~EEtGl~v~~ 59 (132)
T cd04661 13 TLVLLVQQKVGS---QNHWILP-QGKREEGETLRQTAERTLKELCGNNLKA 59 (132)
T ss_pred cEEEEEEeecCC---CCeeECC-cccccCCCCHHHHHHHHHHHhhCCCceE
Confidence 467777776432 6899966 9999999999999999999999996553
No 75
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional
Probab=97.84 E-value=4.2e-05 Score=74.66 Aligned_cols=47 Identities=19% Similarity=0.277 Sum_probs=40.3
Q ss_pred EEEEeecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHhhhhhCCCccc
Q 021094 233 FLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSI 282 (317)
Q Consensus 233 ~lwV~rRS~~K~t~PG~wD~~vAGgv~aGEs~~ea~~RE~~EEAGL~~~l 282 (317)
++++.||+.. .++|+|.. .||++..||++.+|++||+.||+||....
T Consensus 215 ~VLLvrR~~~--p~~g~W~l-PGG~ve~gEt~~~Aa~REl~EETGl~v~~ 261 (340)
T PRK05379 215 HVLLVRRRAE--PGKGLWAL-PGGFLEQDETLLDACLRELREETGLKLPE 261 (340)
T ss_pred EEEEEEecCC--CCCCeEEC-CcccCCCCCCHHHHHHHHHHHHHCCcccc
Confidence 6888888764 35899995 59999999999999999999999997543
No 76
>cd04665 Nudix_Hydrolase_8 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=97.80 E-value=7.7e-05 Score=62.53 Aligned_cols=52 Identities=17% Similarity=0.134 Sum_probs=38.7
Q ss_pred EEEEeecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHhhhhhCCCccccccceEEEE
Q 021094 233 FLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRYTSFTE 291 (317)
Q Consensus 233 ~lwV~rRS~~K~t~PG~wD~~vAGgv~aGEs~~ea~~RE~~EEAGL~~~l~~~~~SY~~ 291 (317)
++++-+|. -+.|+. .+|++..||++.+||+||+.||+|+..........|..
T Consensus 12 ~vLl~~~~------~~~w~l-PgG~ve~gE~~~~aa~REl~EE~G~~~~~~~~l~~~~~ 63 (118)
T cd04665 12 GLLLVRHK------DRGWEF-PGGHVEPGETIEEAARREVWEETGAELGSLTLVGYYQV 63 (118)
T ss_pred EEEEEEeC------CCEEEC-CccccCCCCCHHHHHHHHHHHHHCCccCceEEEEEEEe
Confidence 45555553 256995 58999999999999999999999998755544434443
No 77
>KOG3084 consensus NADH pyrophosphatase I of the Nudix family of hydrolases [Replication, recombination and repair]
Probab=97.70 E-value=5.3e-05 Score=73.82 Aligned_cols=63 Identities=33% Similarity=0.538 Sum_probs=48.2
Q ss_pred CCceEEEEeecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHhhhhhCCCccccccceEEEEecCCCcccc
Q 021094 229 DGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRYTSFTELDQWELFPI 300 (317)
Q Consensus 229 dg~~~lwV~rRS~~K~t~PG~wD~~vAGgv~aGEs~~ea~~RE~~EEAGL~~~l~~~~~SY~~~~~~~~~p~ 300 (317)
++ .+.++.| +|+.-||||.++ ||=+.+|||.+||++||.+||+||..+-+ +|+-..+.-++|+
T Consensus 198 d~-~~~LL~R---~~r~~~gl~t~l-AGFlEpGES~eeav~REtwEEtGi~V~~I----~~~asQPWP~~p~ 260 (345)
T KOG3084|consen 198 DG-KHALLGR---QKRYPPGLWTCL-AGFLEPGESIEEAVRRETWEETGIEVEVI----SYVASQPWPLMPQ 260 (345)
T ss_pred CC-CEeeeec---ccCCCCchhhhh-hccCCccccHHHHHHHHHHHHhCceeeeE----eeeecCCCCCCch
Confidence 44 3677766 677788999865 89999999999999999999999987654 3555555444443
No 78
>PRK11762 nudE adenosine nucleotide hydrolase NudE; Provisional
Probab=97.69 E-value=0.00014 Score=64.75 Aligned_cols=53 Identities=19% Similarity=0.068 Sum_probs=40.6
Q ss_pred EEEEeecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHhhhhhCCCccccccce
Q 021094 233 FLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRYT 287 (317)
Q Consensus 233 ~lwV~rRS~~K~t~PG~wD~~vAGgv~aGEs~~ea~~RE~~EEAGL~~~l~~~~~ 287 (317)
++++-|+.. ....++.|. +.||++..||++.+||+||+.||+|+..+..+...
T Consensus 60 ~vlLvrq~r-~~~~~~~~e-lPaG~ve~gE~~~~aA~REl~EEtG~~~~~l~~l~ 112 (185)
T PRK11762 60 TLLLIREYA-AGTERYELG-FPKGLIDPGETPLEAANRELKEEVGFGARQLTFLK 112 (185)
T ss_pred EEEEEEeec-CCCCCcEEE-ccceeCCCCCCHHHHHHHHHHHHHCCCCcceEEEE
Confidence 455555432 235678896 56999999999999999999999999887665543
No 79
>cd04663 Nudix_Hydrolase_6 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V) which functions as metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are
Probab=97.56 E-value=0.00022 Score=60.91 Aligned_cols=51 Identities=16% Similarity=0.247 Sum_probs=38.0
Q ss_pred EEEEEeC-CceEEEEeecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHhhhhhCCCc
Q 021094 223 NGYVEKD-GQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPR 280 (317)
Q Consensus 223 ngyv~~d-g~~~lwV~rRS~~K~t~PG~wD~~vAGgv~aGEs~~ea~~RE~~EEAGL~~ 280 (317)
.+|...+ ++.++.+-|... +.| .+.+|++.+||++.+|++||+.||+|+..
T Consensus 4 ~~~~~~~~~~~~ll~~r~~~------~~~-~lPgG~ve~~E~~~~aa~Rel~EEtGl~~ 55 (126)
T cd04663 4 PAVLRRNGEVLELLVFEHPL------AGF-QIVKGTVEPGETPEAAALRELQEESGLPS 55 (126)
T ss_pred EEEEEeCCceEEEEEEEcCC------CcE-ECCCccCCCCCCHHHHHHHHHHHHHCCee
Confidence 3444433 235666665543 347 46799999999999999999999999986
No 80
>TIGR02705 nudix_YtkD nucleoside triphosphatase YtkD. The functional assignment to the proteins of this family is contentious. Reference challenges the findings of reference, both in interpretation and in enzyme assay results. This protein belongs to the nudix family and shares some sequence identity with E. coli MutT but appears not to be functionally interchangeable with it.
Probab=97.53 E-value=0.00059 Score=60.35 Aligned_cols=82 Identities=15% Similarity=0.225 Sum_probs=51.9
Q ss_pred eCCCCceeEEEecccCCcCCccceeEEEEEEEEeCCceEEEEeecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHhhh
Q 021094 195 STFGSPIFFSLDRAAAPYFGIKAYAVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEE 274 (317)
Q Consensus 195 ~~~g~~~l~~ieRaa~~~fGl~~~gVHlngyv~~dg~~~lwV~rRS~~K~t~PG~wD~~vAGgv~aGEs~~ea~~RE~~E 274 (317)
|.+|++.-+..+....-. ..-|+.+....++ .-+++.++ . ..|+ +.||++..||++.+||+||++|
T Consensus 5 d~~~~~v~l~~~~~~~~~-----~~~~V~ii~~~~~-~~LL~~~~-~------~~~e-lPgG~vE~gEt~~eaA~REl~E 70 (156)
T TIGR02705 5 DYYGNKVTLAFEKEPFSP-----NPNHVLVIPRYKD-QWLLTEHK-R------RGLE-FPGGKVEPGETSKEAAIREVME 70 (156)
T ss_pred cCCCCEEEEEEeCCcccC-----CCCEEEEEEEECC-EEEEEEEc-C------CcEE-CCceecCCCCCHHHHHHHHHHH
Confidence 556667666666654222 1126666655444 33444443 2 2365 5689999999999999999999
Q ss_pred hhCCCccccccceEEE
Q 021094 275 EAGIPRSISNRYTSFT 290 (317)
Q Consensus 275 EAGL~~~l~~~~~SY~ 290 (317)
|+|+..+......+|.
T Consensus 71 ETG~~~~~~~~lg~~~ 86 (156)
T TIGR02705 71 ETGAIVKELHYIGQYE 86 (156)
T ss_pred HhCcEeeeeEEEEEEE
Confidence 9999765444333443
No 81
>TIGR00052 nudix-type nucleoside diphosphatase, YffH/AdpP family.
Probab=97.45 E-value=0.00031 Score=63.12 Aligned_cols=40 Identities=25% Similarity=0.293 Sum_probs=33.4
Q ss_pred CCCCcccccccCCCCCCCHHHHHHHHhhhhhCCCccccccc
Q 021094 246 YPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRY 286 (317)
Q Consensus 246 ~PG~wD~~vAGgv~aGEs~~ea~~RE~~EEAGL~~~l~~~~ 286 (317)
-|+.|. +.||++..||++.+|++||++||+|+...-....
T Consensus 75 ~~~~le-lPaG~ve~gE~~~~aA~REl~EEtG~~~~~~~~~ 114 (185)
T TIGR00052 75 EPWLLE-LSAGMVEKGESPEDVARREAIEEAGYQVKNLRKL 114 (185)
T ss_pred cceEEE-ECcEecCCCCCHHHHHHHHccccccceecceEEE
Confidence 466776 5699999999999999999999999987655443
No 82
>cd04674 Nudix_Hydrolase_16 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=97.37 E-value=0.00047 Score=58.07 Aligned_cols=46 Identities=28% Similarity=0.372 Sum_probs=37.2
Q ss_pred EEEEeecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHhhhhhCCCccc
Q 021094 233 FLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSI 282 (317)
Q Consensus 233 ~lwV~rRS~~K~t~PG~wD~~vAGgv~aGEs~~ea~~RE~~EEAGL~~~l 282 (317)
.+++ +|+.. .++|+|. +.+|.+..||++.+|+.||+.||+|+....
T Consensus 17 ~lL~-~r~~~--~~~~~w~-lPgG~ve~~E~~~~aa~REl~EE~g~~~~~ 62 (118)
T cd04674 17 LLVI-RRGIE--PGRGKLA-LPGGFIELGETWQDAVARELLEETGVAVDP 62 (118)
T ss_pred EEEE-EeecC--CCCCeEE-CCceecCCCCCHHHHHHHHHHHHHCCcccc
Confidence 4555 55432 3689997 669999999999999999999999998653
No 83
>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]
Probab=97.33 E-value=0.00025 Score=68.19 Aligned_cols=47 Identities=23% Similarity=0.380 Sum_probs=41.6
Q ss_pred EEEeecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHhhhhhCCCccccc
Q 021094 234 LWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISN 284 (317)
Q Consensus 234 lwV~rRS~~K~t~PG~wD~~vAGgv~aGEs~~ea~~RE~~EEAGL~~~l~~ 284 (317)
+++.+|..++ |||+-.+ ||=|.+|||.++|..||..||+||...-++
T Consensus 157 ilLa~~~~h~---~g~yS~L-AGFVE~GETlE~AV~REv~EE~Gi~V~~vr 203 (279)
T COG2816 157 ILLARHPRHF---PGMYSLL-AGFVEPGETLEQAVAREVFEEVGIKVKNVR 203 (279)
T ss_pred eeecCCCCCC---Ccceeee-eecccCCccHHHHHHHHHHHhhCeEEeeee
Confidence 8999998875 9999876 899999999999999999999999765444
No 84
>KOG3069 consensus Peroxisomal NUDIX hydrolase [Replication, recombination and repair]
Probab=97.19 E-value=0.00097 Score=62.84 Aligned_cols=68 Identities=21% Similarity=0.198 Sum_probs=52.4
Q ss_pred ceeEEEEEEEEeCCceEEEEeecCCCCCCCCCCcccccccCCCC-CCCHHHHHHHHhhhhhCCCcccccc
Q 021094 217 AYAVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLPH-GIACGENIIKECEEEAGIPRSISNR 285 (317)
Q Consensus 217 ~~gVHlngyv~~dg~~~lwV~rRS~~K~t~PG~wD~~vAGgv~a-GEs~~ea~~RE~~EEAGL~~~l~~~ 285 (317)
.-+|-+-.+..++++.+++++|||.+-++++|-.=.. ||-... ..+-..+|.||++||.||+.+.+.-
T Consensus 43 ~~aVlI~L~~~~~~~l~vLltkRSr~LrshsGev~fP-GG~~d~~D~s~~~tAlREt~EEIGl~~~~~~~ 111 (246)
T KOG3069|consen 43 KAAVLIPLVQVGSGELSVLLTKRSRTLRSHSGEVCFP-GGRRDPHDKSDIQTALRETEEEIGLDPELVDV 111 (246)
T ss_pred CccEEEEEEEcCCCceEEEEEeccccccccCCceeCC-CCcCCccccchHHHHHHHHHHHhCCCHHHhhh
Confidence 3456666676556778999999999999999977543 455544 5556679999999999999876653
No 85
>PRK10729 nudF ADP-ribose pyrophosphatase NudF; Provisional
Probab=97.04 E-value=0.003 Score=57.71 Aligned_cols=36 Identities=22% Similarity=0.326 Sum_probs=30.2
Q ss_pred CCcccccccCCCCCCCHHHHHHHHhhhhhCCCccccc
Q 021094 248 GMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISN 284 (317)
Q Consensus 248 G~wD~~vAGgv~aGEs~~ea~~RE~~EEAGL~~~l~~ 284 (317)
-.|. +.||.+..||++.+|++||+.||+|+...-..
T Consensus 82 ~~lE-~PAG~vd~gE~p~~aA~REL~EETGy~a~~~~ 117 (202)
T PRK10729 82 WLLE-MVAGMIEEGESVEDVARREAIEEAGLIVGRTK 117 (202)
T ss_pred eEEE-ccceEcCCCCCHHHHHHHHHHHHhCceeeEEE
Confidence 3455 56999999999999999999999999865443
No 86
>PLN03143 nudix hydrolase; Provisional
Probab=96.69 E-value=0.018 Score=55.82 Aligned_cols=124 Identities=20% Similarity=0.248 Sum_probs=63.1
Q ss_pred eEEeccCCCCHHHHHHHHHHHHHHHHHc-----CCCCC----ccCCeeEeeeCCCCceeEE-EecccCCc-CCccc----
Q 021094 153 HVKLNSKLKTADERTRVVGEVIKCLAEE-----ELIPD----IQNELYPVASTFGSPIFFS-LDRAAAPY-FGIKA---- 217 (317)
Q Consensus 153 ~V~L~p~l~t~e~RT~al~~v~~~Lr~~-----g~i~G----wr~E~~~V~~~~g~~~l~~-ieRaa~~~-fGl~~---- 217 (317)
.|.+.|.+...+-|.+.-...++.|... +.... -|.=.+.=+|-+|+++.+. +....+.+ -|-..
T Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~vd~fg~~~gflkv~~d~~~l~~G~~~~~~v 124 (291)
T PLN03143 45 LVVAAPGISSSDFRKAIDSSLFRQWLKNLQSESGILAYGSMSLKQVLIQGVDMFGKRIGFLKFKADIIDKETGQKVPGIV 124 (291)
T ss_pred eEecCCCCCHHHHHhHhcChHHHHHHHHhhhccccccCCCceeEEEEEEEEecccCceeEEEEEEEEEECCCCCEeeEEE
Confidence 4666676665555444444455555331 11110 1111222256666665443 33322221 23111
Q ss_pred ----eeEEEEEEEEeCCceEEEEeecCC--CCCCCCCCcccccccCCCC-CCCHHHHHHHHhhhhhCCCc
Q 021094 218 ----YAVPLNGYVEKDGQKFLWIGKRSQ--VKSTYPGMLDILAGGGLPH-GIACGENIIKECEEEAGIPR 280 (317)
Q Consensus 218 ----~gVHlngyv~~dg~~~lwV~rRS~--~K~t~PG~wD~~vAGgv~a-GEs~~ea~~RE~~EEAGL~~ 280 (317)
.+|-+..++..+++.++.+-|+.. ... -.|. +-||.+.. |+++.++|+||++||+|+..
T Consensus 125 ~~rg~aVaVL~~l~~~ge~~VlLVrQ~R~pvg~---~~lE-~PAG~lD~~~edp~~aA~REL~EETG~~~ 190 (291)
T PLN03143 125 FARGPAVAVLILLESEGETYAVLTEQVRVPVGK---FVLE-LPAGMLDDDKGDFVGTAVREVEEETGIKL 190 (291)
T ss_pred EEcCCeEEEEEEEeCCCCEEEEEEEeEecCCCc---EEEE-ecccccCCCCCCHHHHHHHHHHHHHCCcc
Confidence 123333333224454444444443 322 2565 45888887 48999999999999999964
No 87
>cd03670 ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose to AMP and ribose-5-P. Like other members of the Nudix hydrolase superfamily of enzymes, it is thought to require a divalent cation, such as Mg2+, for its activity. It also contains a 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). ADPRase-m is also known as NUDT9. It can be distinugished from the cytosolic ADPRase by a N-terminal target sequence unique to mitochondrial ADPRase. NUDT9 functions as a monomer.
Probab=96.56 E-value=0.0067 Score=55.18 Aligned_cols=44 Identities=25% Similarity=0.188 Sum_probs=36.7
Q ss_pred CceEEEEeecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHhhhhhCCC
Q 021094 230 GQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIP 279 (317)
Q Consensus 230 g~~~lwV~rRS~~K~t~PG~wD~~vAGgv~aGEs~~ea~~RE~~EEAGL~ 279 (317)
+..++++-||.. +|+|.. -+|.+.+||++.+|++||+.||+||.
T Consensus 47 ~~l~vLl~~r~~-----~g~wal-PGG~v~~~E~~~~aa~Rel~EEt~l~ 90 (186)
T cd03670 47 PILQFVAIKRPD-----SGEWAI-PGGMVDPGEKISATLKREFGEEALNS 90 (186)
T ss_pred CeeEEEEEEeCC-----CCcCcC-CeeeccCCCCHHHHHHHHHHHHHccc
Confidence 346777777743 599995 59999999999999999999999764
No 88
>PRK15009 GDP-mannose pyrophosphatase NudK; Provisional
Probab=96.24 E-value=0.0057 Score=55.43 Aligned_cols=32 Identities=25% Similarity=0.169 Sum_probs=26.2
Q ss_pred ccccCCCCCCCHHHHHHHHhhhhhCCCcccccc
Q 021094 253 LAGGGLPHGIACGENIIKECEEEAGIPRSISNR 285 (317)
Q Consensus 253 ~vAGgv~aGEs~~ea~~RE~~EEAGL~~~l~~~ 285 (317)
+.||.+..| ++++||+||+.||+|+...-...
T Consensus 83 lPAG~vd~~-~p~~aA~REL~EETGy~a~~~~~ 114 (191)
T PRK15009 83 TCAGLLDND-EPEVCIRKEAIEETGYEVGEVRK 114 (191)
T ss_pred EeccccCCC-CHHHHHHHHHHHhhCCccceEEE
Confidence 568888866 79999999999999997654443
No 89
>KOG2839 consensus Diadenosine and diphosphoinositol polyphosphate phosphohydrolase [Signal transduction mechanisms]
Probab=96.17 E-value=0.0036 Score=55.08 Aligned_cols=33 Identities=24% Similarity=0.328 Sum_probs=29.6
Q ss_pred ccCCCCCCCHHHHHHHHhhhhhCCCccccccce
Q 021094 255 GGGLPHGIACGENIIKECEEEAGIPRSISNRYT 287 (317)
Q Consensus 255 AGgv~aGEs~~ea~~RE~~EEAGL~~~l~~~~~ 287 (317)
.||+.++|++.+||+||..||||+...+.+...
T Consensus 42 KGGwE~dE~~~eAA~REt~EEAGv~G~l~~~~~ 74 (145)
T KOG2839|consen 42 KGGWEPDESVEEAALRETWEEAGVKGKLGRLLG 74 (145)
T ss_pred CCCCCCCCCHHHHHHHHHHHHhCceeeeecccc
Confidence 799999999999999999999999888877433
No 90
>KOG3041 consensus Nucleoside diphosphate-sugar hydrolase of the MutT (NUDIX) family [Replication, recombination and repair]
Probab=95.87 E-value=0.022 Score=52.89 Aligned_cols=62 Identities=24% Similarity=0.350 Sum_probs=44.9
Q ss_pred eeEEEEEEEEeCCceEEEEee--cCCCCCCCCCCcccccccCCCCCCCHHHHHHHHhhhhhCCCcccc
Q 021094 218 YAVPLNGYVEKDGQKFLWIGK--RSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSIS 283 (317)
Q Consensus 218 ~gVHlngyv~~dg~~~lwV~r--RS~~K~t~PG~wD~~vAGgv~aGEs~~ea~~RE~~EEAGL~~~l~ 283 (317)
-||-+...++.||+..+.++| |-+. --=++. +-||-+.+||++..||+||++||+|......
T Consensus 74 dgVaIl~il~~dG~~~ivL~kQfRpP~---Gk~ciE-lPAGLiD~ge~~~~aAiREl~EEtGy~gkv~ 137 (225)
T KOG3041|consen 74 DGVAILAILESDGKPYIVLVKQFRPPT---GKICIE-LPAGLIDDGEDFEGAAIRELEEETGYKGKVD 137 (225)
T ss_pred CeEEEEEEEecCCcEEEEEEEeecCCC---CcEEEE-cccccccCCCchHHHHHHHHHHHhCccceee
Confidence 356666677668887777665 3333 212344 4589999999999999999999999975443
No 91
>cd03431 DNA_Glycosylase_C DNA glycosylase (MutY in bacteria and hMYH in humans) is responsible for repairing misread A*oxoG residues to C*G by removing the inappropriately paired adenine base from the DNA backbone. It belongs to the Nudix hydrolase superfamily and is important for the repair of various genotoxic lesions. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity. They are also recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V). However, DNA glycosylase does not seem to contain this signature motif. DNA glycosylase consists of 2 domains: the N-terminal domain contains the catalytic properties of the enzyme and the C-terminal domain affects substrate (oxoG) binding and enzymatic turnover. The C-terminal domain is highly similar to MutT, based on secondary structure and topology, despite low sequence identity. MutT sanitizes the nucleotide precursor pool by hydrolyzing oxo-dGTP to
Probab=95.75 E-value=0.04 Score=43.64 Aligned_cols=45 Identities=11% Similarity=0.171 Sum_probs=38.1
Q ss_pred eEEEEeecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHhhhhhCC
Q 021094 232 KFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGI 278 (317)
Q Consensus 232 ~~lwV~rRS~~K~t~PG~wD~~vAGgv~aGEs~~ea~~RE~~EEAGL 278 (317)
++++|+||.. +..|+|||+.. +|-+..+++..+++.+|..||+++
T Consensus 14 ~~~ll~kR~~-~gl~~glwefP-~~~~~~~~~~~~~~~~~~~~~~~~ 58 (118)
T cd03431 14 GRVLLEKRPE-KGLLAGLWEFP-SVEWEEEADGEEALLSALKKALRL 58 (118)
T ss_pred CeEEEEECCC-CCCCCcceeCC-CccccCCcCHHHHHHHHHHHHhCc
Confidence 4799999955 58899999977 566777899999999999999864
No 92
>KOG0648 consensus Predicted NUDIX hydrolase FGF-2 and related proteins [Signal transduction mechanisms]
Probab=88.92 E-value=4.6 Score=39.63 Aligned_cols=60 Identities=17% Similarity=0.235 Sum_probs=42.9
Q ss_pred EEEEEeCCceEEEEeecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHhhhhhCCCccccc
Q 021094 223 NGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISN 284 (317)
Q Consensus 223 ngyv~~dg~~~lwV~rRS~~K~t~PG~wD~~vAGgv~aGEs~~ea~~RE~~EEAGL~~~l~~ 284 (317)
.++|.+ -.+++.|-+=-..-..++|.|-.- .|-+..||++.+.++||.+||+|++.++..
T Consensus 119 g~~V~n-~~~eVlVv~e~d~~~~~~~~wK~p-tG~v~~~e~i~~gavrEvkeetgid~ef~e 178 (295)
T KOG0648|consen 119 GAFVLN-KKKEVLVVQEKDGAVKIRGGWKLP-TGRVEEGEDIWHGAVREVKEETGIDTEFVE 178 (295)
T ss_pred eeeEec-CCceeEEEEecccceeeccccccc-ceEecccccchhhhhhhhHHHhCcchhhhh
Confidence 344543 224666643324456788999865 568899999999999999999999766544
No 93
>COG4112 Predicted phosphoesterase (MutT family) [General function prediction only]
Probab=83.39 E-value=3.6 Score=37.53 Aligned_cols=77 Identities=17% Similarity=0.192 Sum_probs=52.1
Q ss_pred EEEEeecCCC--CCCCCCCcccccccCCCCCCC--HH-----HHHHHHhhhhhCCCccccccceEEEEecCCCccccccc
Q 021094 233 FLWIGKRSQV--KSTYPGMLDILAGGGLPHGIA--CG-----ENIIKECEEEAGIPRSISNRYTSFTELDQWELFPIRTL 303 (317)
Q Consensus 233 ~lwV~rRS~~--K~t~PG~wD~~vAGgv~aGEs--~~-----ea~~RE~~EEAGL~~~l~~~~~SY~~~~~~~~~p~~~~ 303 (317)
+++|-.|-.. .+--.|++-.-++||+..|+. +. -++.||++||.++...-.+....-..+++. ..+
T Consensus 73 evliyeRltgggE~RLHn~~SlG~GGHmn~~~GA~s~~evLk~n~~REleEEv~vseqd~q~~e~lGlINdd-----~ne 147 (203)
T COG4112 73 EVLIYERLTGGGEKRLHNLYSLGIGGHMNEGDGATSREEVLKGNLERELEEEVDVSEQDLQELEFLGLINDD-----TNE 147 (203)
T ss_pred EEEEEEeccCcchhhhccccccccccccccCCCcccHHHHHccchHHHHHHHhCcCHHHhhhheeeeeecCC-----Ccc
Confidence 5666666432 233558888899999987544 33 358899999999998777766544455554 234
Q ss_pred cceeeeceEEE
Q 021094 304 MGLVTKEMLYF 314 (317)
Q Consensus 304 ~glv~pe~~yv 314 (317)
-|.||-++++.
T Consensus 148 VgkVHiG~lf~ 158 (203)
T COG4112 148 VGKVHIGALFL 158 (203)
T ss_pred cceEEEEEEEE
Confidence 57777777664
No 94
>KOG4195 consensus Transient receptor potential-related channel 7 [Inorganic ion transport and metabolism]
Probab=73.52 E-value=8.1 Score=36.90 Aligned_cols=38 Identities=29% Similarity=0.312 Sum_probs=30.8
Q ss_pred EEEEeecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHhhhhh
Q 021094 233 FLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEA 276 (317)
Q Consensus 233 ~lwV~rRS~~K~t~PG~wD~~vAGgv~aGEs~~ea~~RE~~EEA 276 (317)
++..-||+.+ |.|-. -+|.+.+||-+-.+++||..|||
T Consensus 140 e~vavkr~d~-----~~WAi-PGGmvdpGE~vs~tLkRef~eEa 177 (275)
T KOG4195|consen 140 EFVAVKRPDN-----GEWAI-PGGMVDPGEKVSATLKREFGEEA 177 (275)
T ss_pred EEEEEecCCC-----CcccC-CCCcCCchhhhhHHHHHHHHHHH
Confidence 4556667665 55664 48999999999999999999999
No 95
>COG4119 Predicted NTP pyrophosphohydrolase [DNA replication, recombination, and repair / General function prediction only]
Probab=72.87 E-value=3 Score=36.67 Aligned_cols=33 Identities=27% Similarity=0.195 Sum_probs=27.9
Q ss_pred CCcccccccCCCCCCCHHHHHHHHhhhhhCCCcc
Q 021094 248 GMLDILAGGGLPHGIACGENIIKECEEEAGIPRS 281 (317)
Q Consensus 248 G~wD~~vAGgv~aGEs~~ea~~RE~~EEAGL~~~ 281 (317)
|-|-.. -|-...||+++-++.||.-||+||..+
T Consensus 36 GAWSIP-KGey~~gEdp~~AArREf~EE~Gi~vd 68 (161)
T COG4119 36 GAWSIP-KGEYTGGEDPWLAARREFSEEIGICVD 68 (161)
T ss_pred Cccccc-ccccCCCcCHHHHHHHHhhhhhceeec
Confidence 566644 678889999999999999999999764
No 96
>PF14815 NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3FSQ_A 1RRS_A 3FSP_A.
Probab=65.12 E-value=12 Score=30.05 Aligned_cols=52 Identities=17% Similarity=0.150 Sum_probs=30.1
Q ss_pred CceEEEEeecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHhhhhhCCCccccc
Q 021094 230 GQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISN 284 (317)
Q Consensus 230 g~~~lwV~rRS~~K~t~PG~wD~~vAGgv~aGEs~~ea~~RE~~EEAGL~~~l~~ 284 (317)
.++++++.||.. |..+-|||+....-. . ++...+.+.+.+.+..|+.....+
T Consensus 7 ~~~~~Ll~kRp~-~gll~GLwefP~~e~-~-~~~~~~~l~~~~~~~~~~~~~~~~ 58 (114)
T PF14815_consen 7 SQGRVLLEKRPE-KGLLAGLWEFPLIES-D-EEDDEEELEEWLEEQLGLSIRSVE 58 (114)
T ss_dssp TTSEEEEEE--S-SSTTTT-EE--EEE--S-SS-CHHHHHHHTCCSSS-EEEE-S
T ss_pred eCCEEEEEECCC-CChhhcCcccCEeCc-c-CCCCHHHHHHHHHHHcCCChhhhe
Confidence 345799999955 479999999875432 2 444466677777788888655444
No 97
>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]
Probab=44.64 E-value=14 Score=43.11 Aligned_cols=65 Identities=23% Similarity=0.412 Sum_probs=47.8
Q ss_pred eeEEEEEEEEeCCceEEEEeecCCCCCCCCCCcccc--cccCCCCCC-----CHHHHHHHHhhhhhCCCccc
Q 021094 218 YAVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDIL--AGGGLPHGI-----ACGENIIKECEEEAGIPRSI 282 (317)
Q Consensus 218 ~gVHlngyv~~dg~~~lwV~rRS~~K~t~PG~wD~~--vAGgv~aGE-----s~~ea~~RE~~EEAGL~~~l 282 (317)
+----|||.+.+|---+++||++.-++.|.-.+..- .-|.-..|. ...+.++||..+|+||.++-
T Consensus 224 FDeagnGY~Rseg~~avllqrk~~ArRvYAtilnartNTDGfKEqGvTfP~G~~Q~qLi~e~Yse~Gl~P~s 295 (2376)
T KOG1202|consen 224 FDEAGNGYCRSEGVVAVLLQRKSLARRVYATILNARTNTDGFKEQGVTFPSGDMQEQLIRETYSEAGLNPES 295 (2376)
T ss_pred hhccCCceeecCceEEEEEehhHHHHHHHHHhhccccCCCchhhcCccCCCcHHHHHHHHHHHHhcCCCccc
Confidence 444678999877777899999999999998666421 123322332 36788999999999998764
No 98
>PF08057 Ery_res_leader2: Erythromycin resistance leader peptide; InterPro: IPR012559 This family consists of erythromycin resistance gene leader peptides. These leader peptides are involved in the transcriptional attenuation control of the synthesis of the macrolide-lincosamide -streptogramin B resistance protein. It acts as a transcriptional attenuator, in contrast to other inducible erm genes. The mRNA leader sequence can fold in either of two mutually exclusive conformations, one of which is postulated to form in the absence of induction, and to contain two rho factor-independent terminators [].; GO: 0046677 response to antibiotic
Probab=43.95 E-value=11 Score=20.74 Aligned_cols=12 Identities=50% Similarity=1.046 Sum_probs=10.5
Q ss_pred ccceeecccCCC
Q 021094 8 LTQTIRLSFPPL 19 (317)
Q Consensus 8 ~~~~~~~~~~~~ 19 (317)
.|||.|+.||.|
T Consensus 1 mthsmrlrfptl 12 (14)
T PF08057_consen 1 MTHSMRLRFPTL 12 (14)
T ss_pred Cccceeeecccc
Confidence 378999999988
No 99
>COG1456 CdhE CO dehydrogenase/acetyl-CoA synthase gamma subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=34.61 E-value=19 Score=36.65 Aligned_cols=36 Identities=31% Similarity=0.400 Sum_probs=27.0
Q ss_pred CCCCCcccccccCCCCCCCHHHHHHHHhhhhhCCCcccccc
Q 021094 245 TYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNR 285 (317)
Q Consensus 245 t~PG~wD~~vAGgv~aGEs~~ea~~RE~~EEAGL~~~l~~~ 285 (317)
|----.|.+||||+-.|+ .+||+-||+||......+
T Consensus 387 T~G~aVdvSvAGGQ~tg~-----~vk~lieetgIe~kV~hr 422 (467)
T COG1456 387 TGGLAVDVSVAGGQLTGE-----KVKDLIEETGIEDKVNHR 422 (467)
T ss_pred cCCcEEEEEeeccccccH-----HHHHHHHhhChhhhhccc
Confidence 333447999999999998 567799999986555443
No 100
>COG5014 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=28.74 E-value=4.5e+02 Score=24.71 Aligned_cols=57 Identities=18% Similarity=0.243 Sum_probs=39.6
Q ss_pred ccccccceeecCCCCCCCCccchHHHHHHHHHhcCCCCCCCCeEeEEE--CCEEEEeecHHHHHHHhcCCCeE
Q 021094 70 TFTWDDVFRVSQPEYSPDDSSDLRGYFEKIKICNRGSEMQSEFFPFII--EDQVAGYTHNRFASHLRKYDDVF 140 (317)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~I~~cN~~~~~~~~~~PF~i--~g~~vGyI~p~~~~~L~~~~~vF 140 (317)
+.+ -|++|+|-.|-- ..-.-++++|+.|-+. .|.+ +|..+|+ .+.+++.|...+++.
T Consensus 89 ~~g-~d~vRiSG~EP~----l~~EHvlevIeLl~~~--------tFvlETNG~~~g~-drslv~el~nr~nv~ 147 (228)
T COG5014 89 KRG-CDLVRISGAEPI----LGREHVLEVIELLVNN--------TFVLETNGLMFGF-DRSLVDELVNRLNVL 147 (228)
T ss_pred hcC-CcEEEeeCCCcc----ccHHHHHHHHHhccCc--------eEEEEeCCeEEec-CHHHHHHHhcCCceE
Confidence 344 578999865532 2236788999998555 4777 7889997 567788887666644
No 101
>PF09170 STN1_2: CST, Suppressor of cdc thirteen homolog, complex subunit STN1; InterPro: IPR015253 STN1 is a component of the CST complex, a complex that binds to single-stranded DNA and is required to protect telomeres from DNA degradation. The CST complex binds single-stranded DNA with high affinity in a sequence-independent manner, while isolated subunits bind DNA with low affinity by themselves. In addition to telomere protection, the CST complex has probably a more general role in DNA metabolism at non-telomeric sites [, ]. This entry represents a C-terminal uncharacterised domain ; PDB: 1WJ5_A.
Probab=23.91 E-value=99 Score=28.33 Aligned_cols=62 Identities=18% Similarity=0.190 Sum_probs=26.5
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCC---CCccCCeeEeeeCCCC--ceeEEEecccCCcCCccceeEEE
Q 021094 161 KTADERTRVVGEVIKCLAEEELI---PDIQNELYPVASTFGS--PIFFSLDRAAAPYFGIKAYAVPL 222 (317)
Q Consensus 161 ~t~e~RT~al~~v~~~Lr~~g~i---~Gwr~E~~~V~~~~g~--~~l~~ieRaa~~~fGl~~~gVHl 222 (317)
.+....-..+.++++.|.++|++ .+=.+|+|-|.+.+.+ +.+..|-|..+....-.-.|.|.
T Consensus 98 s~sk~i~~~FkeAiq~Lqe~G~Vfqk~~~~d~lY~VT~~DKdL~~~il~IIrEDcq~pk~aEKGCH~ 164 (174)
T PF09170_consen 98 STSKQIRSIFKEAIQLLQEKGIVFQKDKSQDELYYVTDQDKDLHIAILDIIREDCQRPKHAEKGCHF 164 (174)
T ss_dssp SS-HHHHHHHHHHHHHHHHHTSEE-SS-SSS--BEE-SSS---------------------------
T ss_pred cHHHHHHHHHHHHHHHHHHCCEEEeecCCCCceEEEecCchhHHHHHHHHHHHHhCCcccccccchH
Confidence 46667778999999999999975 3456899999998753 33445666666655555556664
No 102
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=23.35 E-value=52 Score=32.25 Aligned_cols=48 Identities=21% Similarity=0.432 Sum_probs=35.5
Q ss_pred CcccccccCCCC-----------CCCHHHHHHHHhhhhhCCCccccccc---eEEEEecCCC
Q 021094 249 MLDILAGGGLPH-----------GIACGENIIKECEEEAGIPRSISNRY---TSFTELDQWE 296 (317)
Q Consensus 249 ~wD~~vAGgv~a-----------GEs~~ea~~RE~~EEAGL~~~l~~~~---~SY~~~~~~~ 296 (317)
.+|.-+|||+.. |.++-+.++.+++|-+...+.+.... +.|...+-.+
T Consensus 93 ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~ 154 (282)
T KOG1270|consen 93 ILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEG 154 (282)
T ss_pred EEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhh
Confidence 599999999863 88999999999999988877665532 2444444443
No 103
>KOG3904 consensus Predicted hydrolase RP2 (NUDIX/MutT superfamily) [Function unknown]
Probab=23.30 E-value=31 Score=32.33 Aligned_cols=31 Identities=42% Similarity=0.471 Sum_probs=24.6
Q ss_pred CcccccccCCCCCCCHHHHHHHHhhhhhCCC
Q 021094 249 MLDILAGGGLPHGIACGENIIKECEEEAGIP 279 (317)
Q Consensus 249 ~wD~~vAGgv~aGEs~~ea~~RE~~EEAGL~ 279 (317)
.|+..+.||-..-.....+|+||+.||.||-
T Consensus 10 rp~~~~~~~~~~~i~lrltAire~feE~gil 40 (209)
T KOG3904|consen 10 RPEILSGGGTICRIALRLTAIRETFEEVGIL 40 (209)
T ss_pred chhhhccCCceeeeeeccHHHHHHHhhhhee
Confidence 4566666666656888999999999999985
No 104
>PF11212 DUF2999: Protein of unknown function (DUF2999); InterPro: IPR021376 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=22.86 E-value=53 Score=26.27 Aligned_cols=17 Identities=41% Similarity=0.442 Sum_probs=13.8
Q ss_pred HHHHHhhhhhCCCcccc
Q 021094 267 NIIKECEEEAGIPRSIS 283 (317)
Q Consensus 267 a~~RE~~EEAGL~~~l~ 283 (317)
+++||+-||+||+-+-+
T Consensus 58 ~LikeAv~ELgLDFsKv 74 (82)
T PF11212_consen 58 ALIKEAVEELGLDFSKV 74 (82)
T ss_pred HHHHHHHHHhCCcHHHH
Confidence 58999999999975543
No 105
>PLN03090 auxin-responsive family protein; Provisional
Probab=21.18 E-value=5.1e+02 Score=21.86 Aligned_cols=72 Identities=14% Similarity=0.146 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHcCCCCCccCCeeEeeeCCCCceeEEEecccCCcCCccceeEEEEEEEEeCCceEEEEeecCCCCCCC
Q 021094 167 TRVVGEVIKCLAEEELIPDIQNELYPVASTFGSPIFFSLDRAAAPYFGIKAYAVPLNGYVEKDGQKFLWIGKRSQVKSTY 246 (317)
Q Consensus 167 T~al~~v~~~Lr~~g~i~Gwr~E~~~V~~~~g~~~l~~ieRaa~~~fGl~~~gVHlngyv~~dg~~~lwV~rRS~~K~t~ 246 (317)
..-+++++++|...|...+|..+..+. . -.-| |+.+|+- ++..++.|+-.-.+
T Consensus 12 ~~~~kq~l~r~~s~~~~~~~~~~~~~~---------------~-vpkG------~~aVyVG-~~~~RfvVp~~~L~---- 64 (104)
T PLN03090 12 TAMLKQILKRCSSLGKKQGYDEDGLPL---------------D-VPKG------HFPVYVG-ENRSRYIVPISFLT---- 64 (104)
T ss_pred HHHHHHHHHHHHHhcccCCcccccCCC---------------C-CCCC------cEEEEEC-CCCEEEEEEHHHcC----
Confidence 455688999999888776664432111 0 1133 7778874 23345555543322
Q ss_pred CCCcccccccCCCCCCCHHHHHHHHhhhhhCCCc
Q 021094 247 PGMLDILAGGGLPHGIACGENIIKECEEEAGIPR 280 (317)
Q Consensus 247 PG~wD~~vAGgv~aGEs~~ea~~RE~~EEAGL~~ 280 (317)
......+.+.++||.|.+.
T Consensus 65 ---------------hP~F~~LL~~aeeEfGf~~ 83 (104)
T PLN03090 65 ---------------HPEFQSLLQQAEEEFGFDH 83 (104)
T ss_pred ---------------CHHHHHHHHHHHHHhCCCC
Confidence 2357889999999999854
No 106
>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]
Probab=20.50 E-value=1.6e+02 Score=29.68 Aligned_cols=35 Identities=23% Similarity=0.184 Sum_probs=29.0
Q ss_pred CCcccccccCCCCCCCHHHHHHHHhhhhhCCCccc
Q 021094 248 GMLDILAGGGLPHGIACGENIIKECEEEAGIPRSI 282 (317)
Q Consensus 248 G~wD~~vAGgv~aGEs~~ea~~RE~~EEAGL~~~l 282 (317)
|+-=-++||-+.-..++.|-+..|+.||-|-..+.
T Consensus 78 g~tielc~g~idke~s~~eia~eev~eecgy~v~~ 112 (405)
T KOG4432|consen 78 GYTIELCAGLIDKELSPREIASEEVAEECGYRVDP 112 (405)
T ss_pred ceeeeeeccccccccCHHHHhHHHHHHHhCCcCCh
Confidence 44445789999999999999999999999976543
Done!