BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021095
(317 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WJT|A Chain A, Solution Structure Of The N-Terminal Domain I Of Mouse
Transcription Elongation Factor S-Ii Protein 3
Length = 103
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 54/92 (58%), Gaps = 5/92 (5%)
Query: 138 EVLRIKEILHN--SRDESDSVLFESLRRLQLMALTVDTLKATEIGKAVNGLRKHGS-KQI 194
E+LRI + L SR +++ L + L++L +++ L+ T IG AVNG+RKH S K++
Sbjct: 13 ELLRIAKKLEKMVSRKKTEGAL-DLLKKLNSCQMSIQLLQTTRIGVAVNGVRKHCSDKEV 71
Query: 195 RHLARTLIEGWKDLVDEWVNATKAIAEGTPDS 226
LA+ LI+ WK L+D TK E P S
Sbjct: 72 VSLAKVLIKNWKRLLDS-PRTTKGERESGPSS 102
>pdb|1VIX|A Chain A, Crystal Structure Of A Putative Peptidase T
pdb|1VIX|B Chain B, Crystal Structure Of A Putative Peptidase T
Length = 420
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 103 CRDDHVSNQIVSNFSSGDIAEALTDEI 129
C +V+ QIV N+ GDIA + DE+
Sbjct: 87 CSGKNVNPQIVENYRGGDIALGIGDEV 113
>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet)
Length = 186
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Query: 11 WRNYFRSANGDIFDIIDHAVMVAALDCPKEFK--LRRDRIA 49
WRNYF S +G I+ ++D A DC +E + L +R+A
Sbjct: 79 WRNYFESTDGLIW-VVDSADRQRXQDCQRELQSLLVEERLA 118
>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native)
Length = 186
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 11 WRNYFRSANGDIFDIIDHAVMVAALDCPKEFK 42
WRNYF S +G I+ ++D A DC +E +
Sbjct: 79 WRNYFESTDGLIW-VVDSADRQRMQDCQRELQ 109
>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1
Length = 186
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 11 WRNYFRSANGDIFDIIDHAVMVAALDCPKEFK 42
WRNYF S +G I+ ++D A DC +E +
Sbjct: 79 WRNYFESTDGLIW-VVDSADRQRMQDCQRELQ 109
>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1
pdb|3DOF|A Chain A, Complex Of Arl2 And Bart, Crystal Form 2
Length = 192
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Query: 11 WRNYFRSANGDIFDIIDHAVMVAALDCPKEFK--LRRDRIA 49
WRNYF S +G I+ ++D A DC +E + L +R+A
Sbjct: 77 WRNYFESTDGLIW-VVDSADRQRMQDCQRELQSLLVEERLA 116
>pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
pdb|4GOK|A Chain A, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
Length = 169
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 11 WRNYFRSANGDIFDIIDHAVMVAALDCPKEFK 42
WRNYF S +G I+ ++D A DC +E +
Sbjct: 62 WRNYFESTDGLIW-VVDSADRQRMQDCQRELQ 92
>pdb|3CKL|A Chain A, Crystal Structure Of Human Cytosolic Sulfotransferase
Sult1b1 In Complex With Pap And Resveratrol
pdb|3CKL|B Chain B, Crystal Structure Of Human Cytosolic Sulfotransferase
Sult1b1 In Complex With Pap And Resveratrol
Length = 298
Score = 28.1 bits (61), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 3 MKSGSLDNWRNYFRSANGDIFDII 26
M+ G+ +W+NYF A + FD I
Sbjct: 259 MRKGTAGDWKNYFTVAQNEKFDAI 282
>pdb|2Z5F|A Chain A, Human Sulfotransferase Sult1b1 In Complex With Pap
pdb|2Z5F|B Chain B, Human Sulfotransferase Sult1b1 In Complex With Pap
Length = 298
Score = 28.1 bits (61), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 3 MKSGSLDNWRNYFRSANGDIFDII 26
M+ G+ +W+NYF A + FD I
Sbjct: 259 MRKGTAGDWKNYFTVAQNEKFDAI 282
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,135,118
Number of Sequences: 62578
Number of extensions: 358550
Number of successful extensions: 923
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 915
Number of HSP's gapped (non-prelim): 20
length of query: 317
length of database: 14,973,337
effective HSP length: 99
effective length of query: 218
effective length of database: 8,778,115
effective search space: 1913629070
effective search space used: 1913629070
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)